AlfalfaGEDB | MS.gene78182

M. sativa cultivar XinJiangDaYe / MS.gene78182

KEGG: K00660
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0016740 GO:0016746
PFAM: PF00195.22 PF02797.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78182.t1	XP_003595645.1	97.9	326	7	0	1	326	64	389	1.60E-181	645.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78182.t1	O23884	89.6	326	34	0	1	326	64	389	5.5e-170	598.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78182.t1	G7IQL2	97.9	326	7	0	1	326	64	389	1.2e-181	645.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene78182	0.861691	8.59E-64	-1.69E-46
MS.gene051131	MS.gene78182	0.825554	4.40E-54	-1.69E-46
MS.gene052211	MS.gene78182	0.804273	2.34E-49	-1.69E-46
MS.gene05240	MS.gene78182	0.844738	6.28E-59	-1.69E-46
MS.gene052702	MS.gene78182	0.806716	7.19E-50	-1.69E-46
MS.gene052705	MS.gene78182	0.811055	8.48E-51	-1.69E-46
MS.gene052706	MS.gene78182	0.817385	3.39E-52	-1.69E-46
MS.gene054181	MS.gene78182	0.817433	3.31E-52	-1.69E-46
MS.gene054277	MS.gene78182	0.818992	1.47E-52	-1.69E-46
MS.gene054742	MS.gene78182	0.822003	2.99E-53	-1.69E-46
MS.gene056590	MS.gene78182	0.832767	7.83E-56	-1.69E-46
MS.gene056591	MS.gene78182	0.832081	1.16E-55	-1.69E-46
MS.gene056697	MS.gene78182	0.813702	2.24E-51	-1.69E-46
MS.gene056856	MS.gene78182	0.803086	4.12E-49	-1.69E-46
MS.gene056920	MS.gene78182	0.805909	1.06E-49	-1.69E-46
MS.gene056922	MS.gene78182	0.808803	2.59E-50	-1.69E-46
MS.gene057544	MS.gene78182	0.816332	5.84E-52	-1.69E-46
MS.gene057547	MS.gene78182	0.81424	1.70E-51	-1.69E-46
MS.gene058067	MS.gene78182	0.807276	5.47E-50	-1.69E-46
MS.gene058603	MS.gene78182	0.814553	1.45E-51	-1.69E-46
MS.gene059402	MS.gene78182	0.810624	1.05E-50	-1.69E-46
MS.gene059953	MS.gene78182	0.834792	2.44E-56	-1.69E-46
MS.gene059955	MS.gene78182	0.852754	3.75E-61	-1.69E-46
MS.gene060087	MS.gene78182	0.805426	1.34E-49	-1.69E-46
MS.gene061094	MS.gene78182	0.807277	5.47E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78182.t1	MTR_2g058470	97.853	326	7	0	1	326	64	389	0.0	659
MS.gene78182.t1	MTR_5g007713	89.264	326	35	0	1	326	64	389	0.0	610
MS.gene78182.t1	MTR_1g098140	88.957	326	36	0	1	326	64	389	0.0	608
MS.gene78182.t1	MTR_5g007717	88.344	326	38	0	1	326	64	389	0.0	607
MS.gene78182.t1	MTR_5g007760	88.650	326	37	0	1	326	64	389	0.0	606
MS.gene78182.t1	MTR_5g007730	88.344	326	38	0	1	326	64	389	0.0	605
MS.gene78182.t1	MTR_1g097935	88.650	326	37	0	1	326	64	389	0.0	605
MS.gene78182.t1	MTR_1g097910	88.344	326	38	0	1	326	64	389	0.0	605
MS.gene78182.t1	MTR_7g016820	88.344	326	38	0	1	326	64	389	0.0	604
MS.gene78182.t1	MTR_7g016700	88.037	326	39	0	1	326	64	389	0.0	602
MS.gene78182.t1	MTR_7g016720	88.344	326	38	0	1	326	64	389	0.0	602
MS.gene78182.t1	MTR_7g016800	88.037	326	39	0	1	326	64	389	0.0	602
MS.gene78182.t1	MTR_7g016780	87.423	326	41	0	1	326	64	389	0.0	598
MS.gene78182.t1	MTR_3g083910	85.846	325	46	0	1	325	64	388	0.0	595
MS.gene78182.t1	MTR_3g083920	85.846	325	46	0	1	325	64	388	0.0	588
MS.gene78182.t1	MTR_5g007740	81.288	326	61	0	1	326	1	326	0.0	561
MS.gene78182.t1	MTR_7g113405	87.789	303	37	0	24	326	1	303	0.0	553
MS.gene78182.t1	MTR_3g086260	77.846	325	72	0	1	325	64	388	0.0	538
MS.gene78182.t1	MTR_7g084300	76.380	326	77	0	1	326	64	389	0.0	537
MS.gene78182.t1	MTR_5g007723	72.086	326	63	2	1	326	101	398	3.29e-171	481
MS.gene78182.t1	MTR_3g088675	66.564	326	109	0	1	326	64	389	3.63e-171	481
MS.gene78182.t1	MTR_5g007770	73.667	300	46	2	7	306	1	267	2.14e-161	451
MS.gene78182.t1	MTR_3g088670	47.147	333	164	6	2	325	59	388	2.30e-100	301
MS.gene78182.t1	MTR_4g075560	43.252	326	179	3	2	324	66	388	1.71e-88	270
MS.gene78182.t1	MTR_4g078730	38.390	323	193	1	2	324	73	389	2.01e-83	257

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78182.t1	AT5G13930	78.528	326	69	1	2	326	70	395	0.0	541
MS.gene78182.t1	AT4G34850	42.202	327	186	2	2	326	67	392	8.49e-86	263
MS.gene78182.t1	AT4G34850	42.188	320	182	2	9	326	1	319	9.08e-84	256
MS.gene78182.t1	AT4G00040	40.923	325	185	3	2	324	66	385	9.80e-83	255
MS.gene78182.t1	AT1G02050	42.025	326	180	4	2	324	73	392	4.05e-79	246
MS.gene78182.t1	AT3G52160	28.452	239	151	9	87	320	97	320	5.16e-13	69.3
MS.gene78182.t1	AT3G52160	28.216	241	149	9	87	320	210	433	1.38e-12	68.6

Find 78 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTGGCCAACTTCGTGAATT+TGG	0.160923	2.3:+35953991	MS.gene78182:CDS
CACTTATATGGCACCTTCTT+TGG	0.179777	2.3:+35953480	MS.gene78182:CDS
CAAATAGCTCCTTCACTATT+TGG	0.181538	2.3:-35953970	None:intergenic
AATATAGGTTTCTCAATTTC+CGG	0.195930	2.3:-35953916	None:intergenic
CTTGTTGGACAAGCTCTATT+TGG	0.248042	2.3:+35953853	MS.gene78182:CDS
AACCTATATTTGAGTTAGTT+TGG	0.252829	2.3:+35953929	MS.gene78182:CDS
CTGATTACAACTCAATCTTT+TGG	0.293179	2.3:+35954106	MS.gene78182:CDS
GTTTCTCAATTTCCGGTATT+GGG	0.295119	2.3:-35953909	None:intergenic
TCCTAACTTGTGCACTTATA+TGG	0.305354	2.3:+35953468	MS.gene78182:CDS
GGTTTCTCAATTTCCGGTAT+TGG	0.307936	2.3:-35953910	None:intergenic
TGGGGTGTGTTGTTGAGCTT+TGG	0.341984	2.3:+35954327	MS.gene78182:CDS
GTGGCCAACTTCGTGAATTT+GGG	0.347414	2.3:+35953992	MS.gene78182:CDS
TGGCACCTTCTTTGGATACT+AGG	0.378047	2.3:+35953488	MS.gene78182:CDS
ACTTCGCTTGGCCAAGGACT+TGG	0.390660	2.3:+35953738	MS.gene78182:CDS
CTTTCAAAATCTCTTCGGTT+AGG	0.391659	2.3:-35953441	None:intergenic
CCACAGGAGAAGGGCTTGAA+TGG	0.391717	2.3:+35954307	MS.gene78182:CDS
AAGTGTGTAATCTTTGACTT+TGG	0.411995	2.3:-35953586	None:intergenic
GGGGTGTGTTGTTGAGCTTT+GGG	0.414213	2.3:+35954328	MS.gene78182:CDS
ATGGAGAACAATTGTTTCAA+TGG	0.418548	2.3:-35954361	None:intergenic
ATATTCTTTGAGACAATGTC+TGG	0.420813	2.3:-35954042	None:intergenic
CACCTGCAAAACACCCTTGT+TGG	0.425276	2.3:-35953708	None:intergenic
GCTGCCTCCTTTCCTAGTCT+TGG	0.427761	2.3:-35953535	None:intergenic
GGAGCTGCTGCAGTCATTGT+TGG	0.438081	2.3:+35953880	MS.gene78182:CDS
GTTGTTCTCAGCCAAGTCCT+TGG	0.439745	2.3:-35953749	None:intergenic
CATATCATATAGCCACACTA+TGG	0.439993	2.3:-35954380	None:intergenic
GTCCAAACTAACTCAAATAT+AGG	0.444930	2.3:-35953931	None:intergenic
ATTCTCTTTCAAAATCTCTT+CGG	0.446047	2.3:-35953446	None:intergenic
CGTGAAGGCTATAAAAGAAT+GGG	0.451104	2.3:+35953558	MS.gene78182:CDS
TTACCAACTCACAAAACTCT+TGG	0.454437	2.3:+35953651	MS.gene78182:CDS
GTTGAGGCATTCCAACCATT+AGG	0.454615	2.3:+35954078	MS.gene78182:CDS
GTGTTGTTGAGCTTTGGGCC+AGG	0.455664	2.3:+35954333	MS.gene78182:CDS
CACAGGAGAAGGGCTTGAAT+GGG	0.458193	2.3:+35954308	MS.gene78182:CDS
ACTCACTTAGACAACCTTGT+TGG	0.459568	2.3:+35953838	MS.gene78182:CDS
GCCATATAAGTGCACAAGTT+AGG	0.475494	2.3:-35953469	None:intergenic
CCGTGAAGGCTATAAAAGAA+TGG	0.491108	2.3:+35953557	MS.gene78182:CDS
AGATGAGATGAGAAACAAAT+CGG	0.494775	2.3:+35954266	MS.gene78182:CDS
AGGTGGCACGGTACTTCGCT+TGG	0.499760	2.3:+35953726	MS.gene78182:CDS
TACCAACTCACAAAACTCTT+GGG	0.501320	2.3:+35953652	MS.gene78182:CDS
TATTGATAATGCACTGGTTG+AGG	0.508624	2.3:+35954062	MS.gene78182:CDS
TTGTAATCAGAAATACCTAA+TGG	0.510983	2.3:-35954093	None:intergenic
GTGTAATCTTTGACTTTGGT+TGG	0.515155	2.3:-35953582	None:intergenic
ATAGCCCAAATTCACGAAGT+TGG	0.518458	2.3:-35953996	None:intergenic
GTGAGTTGGTAATCGGCACC+AGG	0.519680	2.3:-35953640	None:intergenic
GCTATCATTTCATCTTCGTA+AGG	0.524043	2.3:+35954014	MS.gene78182:CDS
CACGGTACTTCGCTTGGCCA+AGG	0.526116	2.3:+35953732	MS.gene78182:CDS
CAACAAAGGTTCTCGTGTGT+TGG	0.530087	2.3:+35953768	MS.gene78182:CDS
GGACTAAAGACCACAGGAGA+AGG	0.532044	2.3:+35954297	MS.gene78182:CDS
GTCTTCGCCCATATGTGAAA+AGG	0.532629	2.3:+35953674	MS.gene78182:CDS
AATCAGAAATACCTAATGGT+TGG	0.535986	2.3:-35954089	None:intergenic
ATTGTTTCAATGGTAAGTCC+TGG	0.536015	2.3:-35954351	None:intergenic
TGTTGGCTCTGACCCAATAC+CGG	0.538182	2.3:+35953897	MS.gene78182:CDS
TTGTCTAAGTGAGTATCGCT+AGG	0.540677	2.3:-35953829	None:intergenic
AATAGTGAAGGAGCTATTTG+TGG	0.543719	2.3:+35953973	MS.gene78182:CDS
GGACAAGCTCTATTTGGAGA+TGG	0.551435	2.3:+35953859	MS.gene78182:CDS
AAAGAATATTGATAATGCAC+TGG	0.552200	2.3:+35954056	MS.gene78182:CDS
AGAGGCACCAAGACTAGGAA+AGG	0.552572	2.3:+35953528	MS.gene78182:CDS
CCATTCAAGCCCTTCTCCTG+TGG	0.556018	2.3:-35954307	None:intergenic
AGAAACAAATCGGCTCAAGA+TGG	0.558289	2.3:+35954276	MS.gene78182:CDS
GCAAGACATGGTGGTAGTAG+AGG	0.561217	2.3:+35953510	MS.gene78182:CDS
GTAGTAGAGGCACCAAGACT+AGG	0.561904	2.3:+35953523	MS.gene78182:CDS
CAAATAGAGCTTGTCCAACA+AGG	0.563164	2.3:-35953852	None:intergenic
AGGAAAGGAGGCAGCCGTGA+AGG	0.576651	2.3:+35953543	MS.gene78182:CDS
GTGATAAAACTATGATCAAG+AGG	0.578175	2.3:+35953407	None:intergenic
AACAATTGTTCTCCATAGTG+TGG	0.598442	2.3:+35954368	MS.gene78182:CDS
TCTTGCCTAGTATCCAAAGA+AGG	0.601646	2.3:-35953493	None:intergenic
TTTGGATACTAGGCAAGACA+TGG	0.627337	2.3:+35953498	MS.gene78182:CDS
CAAGATGGACTAAAGACCAC+AGG	0.629908	2.3:+35954291	MS.gene78182:CDS
GACTAAAGACCACAGGAGAA+GGG	0.630311	2.3:+35954298	MS.gene78182:CDS
GGTATATGATGTACCAACAA+GGG	0.634634	2.3:+35953695	MS.gene78182:CDS
GGCACCAAGACTAGGAAAGG+AGG	0.637670	2.3:+35953531	MS.gene78182:CDS
TGTCTAAGTGAGTATCGCTA+GGG	0.638735	2.3:-35953828	None:intergenic
ATAAGTGGTGTAGATATGCC+TGG	0.639172	2.3:+35953622	MS.gene78182:CDS
AGGTATATGATGTACCAACA+AGG	0.648772	2.3:+35953694	MS.gene78182:CDS
ACAATCGCTCCAAATAGTGA+AGG	0.649422	2.3:+35953961	MS.gene78182:CDS
ACAGGAGAAGGGCTTGAATG+GGG	0.664347	2.3:+35954309	MS.gene78182:CDS
GACTTGGCTGAGAACAACAA+AGG	0.667313	2.3:+35953754	MS.gene78182:CDS
GTGAAGGCTATAAAAGAATG+GGG	0.683467	2.3:+35953559	MS.gene78182:CDS
GGATACTAGGCAAGACATGG+TGG	0.686878	2.3:+35953501	MS.gene78182:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAATATTTTGCACTATAAG+TGG	+	chr2.3:35953607-35953626	MS.gene78182:CDS	20.0%
!	AATATAGGTTTCTCAATTTC+CGG	-	chr2.3:35953919-35953938	None:intergenic	25.0%
!	AGAAAAATGCTTAGTGAATA+TGG	+	chr2.3:35954210-35954229	MS.gene78182:CDS	25.0%
!	ATTCTCTTTCAAAATCTCTT+CGG	-	chr2.3:35953449-35953468	None:intergenic	25.0%
!	TTGTAATCAGAAATACCTAA+TGG	-	chr2.3:35954096-35954115	None:intergenic	25.0%
!!	AACCTATATTTGAGTTAGTT+TGG	+	chr2.3:35953929-35953948	MS.gene78182:CDS	25.0%
!!	ATCATATACCTTTTCACATA+TGG	-	chr2.3:35953685-35953704	None:intergenic	25.0%
!!	TCATATACCTTTTCACATAT+GGG	-	chr2.3:35953684-35953703	None:intergenic	25.0%
!!!	AAAGAATATTGATAATGCAC+TGG	+	chr2.3:35954056-35954075	MS.gene78182:CDS	25.0%
	AATCAGAAATACCTAATGGT+TGG	-	chr2.3:35954092-35954111	None:intergenic	30.0%
	AGATGAGATGAGAAACAAAT+CGG	+	chr2.3:35954266-35954285	MS.gene78182:CDS	30.0%
	ATGGAGAACAATTGTTTCAA+TGG	-	chr2.3:35954364-35954383	None:intergenic	30.0%
	GTCCAAACTAACTCAAATAT+AGG	-	chr2.3:35953934-35953953	None:intergenic	30.0%
!	AAGTGTGTAATCTTTGACTT+TGG	-	chr2.3:35953589-35953608	None:intergenic	30.0%
!	CTGATTACAACTCAATCTTT+TGG	+	chr2.3:35954106-35954125	MS.gene78182:CDS	30.0%
!!	ATATTCTTTGAGACAATGTC+TGG	-	chr2.3:35954045-35954064	None:intergenic	30.0%
!!	CTCAATTTTGTCTAGAATTG+CGG	-	chr2.3:35954151-35954170	None:intergenic	30.0%
!!	TCAATTTTGTCTAGAATTGC+GGG	-	chr2.3:35954150-35954169	None:intergenic	30.0%
	AACAATTGTTCTCCATAGTG+TGG	+	chr2.3:35954368-35954387	MS.gene78182:CDS	35.0%
	AATAGTGAAGGAGCTATTTG+TGG	+	chr2.3:35953973-35953992	MS.gene78182:CDS	35.0%
	AGGTATATGATGTACCAACA+AGG	+	chr2.3:35953694-35953713	MS.gene78182:CDS	35.0%
	ATTGTTTCAATGGTAAGTCC+TGG	-	chr2.3:35954354-35954373	None:intergenic	35.0%
	CAAATAGCTCCTTCACTATT+TGG	-	chr2.3:35953973-35953992	None:intergenic	35.0%
	CGTGAAGGCTATAAAAGAAT+GGG	+	chr2.3:35953558-35953577	MS.gene78182:CDS	35.0%
	CTTTCAAAATCTCTTCGGTT+AGG	-	chr2.3:35953444-35953463	None:intergenic	35.0%
	GCTATCATTTCATCTTCGTA+AGG	+	chr2.3:35954014-35954033	MS.gene78182:CDS	35.0%
	GGTATATGATGTACCAACAA+GGG	+	chr2.3:35953695-35953714	MS.gene78182:CDS	35.0%
	GTGAAGGCTATAAAAGAATG+GGG	+	chr2.3:35953559-35953578	MS.gene78182:CDS	35.0%
	GTTTCTCAATTTCCGGTATT+GGG	-	chr2.3:35953912-35953931	None:intergenic	35.0%
	TACCAACTCACAAAACTCTT+GGG	+	chr2.3:35953652-35953671	MS.gene78182:CDS	35.0%
	TTACCAACTCACAAAACTCT+TGG	+	chr2.3:35953651-35953670	MS.gene78182:CDS	35.0%
!	CCATTCTTTTATAGCCTTCA+CGG	-	chr2.3:35953560-35953579	None:intergenic	35.0%
!	GTGTAATCTTTGACTTTGGT+TGG	-	chr2.3:35953585-35953604	None:intergenic	35.0%
!	GTTACTGCAATCACATTTTG+TGG	+	chr2.3:35953805-35953824	MS.gene78182:CDS	35.0%
!	TCCTAACTTGTGCACTTATA+TGG	+	chr2.3:35953468-35953487	MS.gene78182:CDS	35.0%
!	TTCACTAAGCATTTTTCTCG+TGG	-	chr2.3:35954208-35954227	None:intergenic	35.0%
!!	TATTGATAATGCACTGGTTG+AGG	+	chr2.3:35954062-35954081	MS.gene78182:CDS	35.0%
!!!	ACTCATCTTTTCAGGTTTCA+AGG	-	chr2.3:35954184-35954203	None:intergenic	35.0%
!!!	GAGTTTTGTGAGTTGGTAAT+CGG	-	chr2.3:35953650-35953669	None:intergenic	35.0%
	ACAATCGCTCCAAATAGTGA+AGG	+	chr2.3:35953961-35953980	MS.gene78182:CDS	40.0%
	ACTCACTTAGACAACCTTGT+TGG	+	chr2.3:35953838-35953857	MS.gene78182:CDS	40.0%
	ATAAGTGGTGTAGATATGCC+TGG	+	chr2.3:35953622-35953641	MS.gene78182:CDS	40.0%
	ATAGCCCAAATTCACGAAGT+TGG	-	chr2.3:35953999-35954018	None:intergenic	40.0%
	CAAATAGAGCTTGTCCAACA+AGG	-	chr2.3:35953855-35953874	None:intergenic	40.0%
	CACTTATATGGCACCTTCTT+TGG	+	chr2.3:35953480-35953499	MS.gene78182:CDS	40.0%
	CCGTGAAGGCTATAAAAGAA+TGG	+	chr2.3:35953557-35953576	MS.gene78182:CDS	40.0%
	CTTGTTGGACAAGCTCTATT+TGG	+	chr2.3:35953853-35953872	MS.gene78182:CDS	40.0%
	GCCATATAAGTGCACAAGTT+AGG	-	chr2.3:35953472-35953491	None:intergenic	40.0%
	GGTTTCTCAATTTCCGGTAT+TGG	-	chr2.3:35953913-35953932	None:intergenic	40.0%
	TCTTGCCTAGTATCCAAAGA+AGG	-	chr2.3:35953496-35953515	None:intergenic	40.0%
	TTTGGATACTAGGCAAGACA+TGG	+	chr2.3:35953498-35953517	MS.gene78182:CDS	40.0%
!	AGAAACAAATCGGCTCAAGA+TGG	+	chr2.3:35954276-35954295	MS.gene78182:CDS	40.0%
!	ATCTTTTGGATTGCTCACTC+TGG	+	chr2.3:35954120-35954139	MS.gene78182:CDS	40.0%
!	TGTCTAAGTGAGTATCGCTA+GGG	-	chr2.3:35953831-35953850	None:intergenic	40.0%
!	TTGTCTAAGTGAGTATCGCT+AGG	-	chr2.3:35953832-35953851	None:intergenic	40.0%
	CAACAAAGGTTCTCGTGTGT+TGG	+	chr2.3:35953768-35953787	MS.gene78182:CDS	45.0%
	GACTAAAGACCACAGGAGAA+GGG	+	chr2.3:35954298-35954317	MS.gene78182:CDS	45.0%
	GACTTGGCTGAGAACAACAA+AGG	+	chr2.3:35953754-35953773	MS.gene78182:CDS	45.0%
	GGACAAGCTCTATTTGGAGA+TGG	+	chr2.3:35953859-35953878	MS.gene78182:CDS	45.0%
	GTCTTCGCCCATATGTGAAA+AGG	+	chr2.3:35953674-35953693	MS.gene78182:CDS	45.0%
	GTGGCCAACTTCGTGAATTT+GGG	+	chr2.3:35953992-35954011	MS.gene78182:CDS	45.0%
	TGGCACCTTCTTTGGATACT+AGG	+	chr2.3:35953488-35953507	MS.gene78182:CDS	45.0%
	TGTGGCCAACTTCGTGAATT+TGG	+	chr2.3:35953991-35954010	MS.gene78182:CDS	45.0%
!	GTTGAGGCATTCCAACCATT+AGG	+	chr2.3:35954078-35954097	MS.gene78182:CDS	45.0%
!	TTTTGGATTGCTCACTCTGG+TGG	+	chr2.3:35954123-35954142	MS.gene78182:CDS	45.0%
!!	CAAGATGGACTAAAGACCAC+AGG	+	chr2.3:35954291-35954310	MS.gene78182:CDS	45.0%
!!	GACCCAAGAGTTTTGTGAGT+TGG	-	chr2.3:35953657-35953676	None:intergenic	45.0%
!!!	TACCAACAAGGGTGTTTTGC+AGG	+	chr2.3:35953706-35953725	MS.gene78182:CDS	45.0%
	ACAGGAGAAGGGCTTGAATG+GGG	+	chr2.3:35954309-35954328	MS.gene78182:CDS	50.0%
	CACAGGAGAAGGGCTTGAAT+GGG	+	chr2.3:35954308-35954327	MS.gene78182:CDS	50.0%
	CACCTGCAAAACACCCTTGT+TGG	-	chr2.3:35953711-35953730	None:intergenic	50.0%
	GCAAGACATGGTGGTAGTAG+AGG	+	chr2.3:35953510-35953529	MS.gene78182:CDS	50.0%
	GGACTAAAGACCACAGGAGA+AGG	+	chr2.3:35954297-35954316	MS.gene78182:CDS	50.0%
	GGATACTAGGCAAGACATGG+TGG	+	chr2.3:35953501-35953520	MS.gene78182:CDS	50.0%
	GTTGTTCTCAGCCAAGTCCT+TGG	-	chr2.3:35953752-35953771	None:intergenic	50.0%
!	CTCGTGGCACTCATCTTTTC+AGG	-	chr2.3:35954192-35954211	None:intergenic	50.0%
!	GGGGTGTGTTGTTGAGCTTT+GGG	+	chr2.3:35954328-35954347	MS.gene78182:CDS	50.0%
!	TGGGGTGTGTTGTTGAGCTT+TGG	+	chr2.3:35954327-35954346	MS.gene78182:CDS	50.0%
!!	AGAGGCACCAAGACTAGGAA+AGG	+	chr2.3:35953528-35953547	MS.gene78182:CDS	50.0%
!!	GTAGTAGAGGCACCAAGACT+AGG	+	chr2.3:35953523-35953542	MS.gene78182:CDS	50.0%
!!	TGTTGGCTCTGACCCAATAC+CGG	+	chr2.3:35953897-35953916	MS.gene78182:CDS	50.0%
!!!	CAACAAGGGTGTTTTGCAGG+TGG	+	chr2.3:35953709-35953728	MS.gene78182:CDS	50.0%
	ACTTCGCTTGGCCAAGGACT+TGG	+	chr2.3:35953738-35953757	MS.gene78182:CDS	55.0%
	CCACAGGAGAAGGGCTTGAA+TGG	+	chr2.3:35954307-35954326	MS.gene78182:CDS	55.0%
	CCATTCAAGCCCTTCTCCTG+TGG	-	chr2.3:35954310-35954329	None:intergenic	55.0%
	GCTGCCTCCTTTCCTAGTCT+TGG	-	chr2.3:35953538-35953557	None:intergenic	55.0%
	GGAGCTGCTGCAGTCATTGT+TGG	+	chr2.3:35953880-35953899	MS.gene78182:CDS	55.0%
	GGCACCAAGACTAGGAAAGG+AGG	+	chr2.3:35953531-35953550	MS.gene78182:CDS	55.0%
!!	AGGGTGTTTTGCAGGTGGCA+CGG	+	chr2.3:35953714-35953733	MS.gene78182:CDS	55.0%
!!	GTGAGTTGGTAATCGGCACC+AGG	-	chr2.3:35953643-35953662	None:intergenic	55.0%
!!	GTGTTGTTGAGCTTTGGGCC+AGG	+	chr2.3:35954333-35954352	MS.gene78182:CDS	55.0%
	AGGAAAGGAGGCAGCCGTGA+AGG	+	chr2.3:35953543-35953562	MS.gene78182:CDS	60.0%
	AGGTGGCACGGTACTTCGCT+TGG	+	chr2.3:35953726-35953745	MS.gene78182:CDS	60.0%
	CACGGTACTTCGCTTGGCCA+AGG	+	chr2.3:35953732-35953751	MS.gene78182:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	35953418	35954398	35953418	ID=MS.gene78182
chr2.3	mRNA	35953418	35954398	35953418	ID=MS.gene78182.t1;Parent=MS.gene78182
chr2.3	exon	35953418	35954398	35953418	ID=MS.gene78182.t1.exon1;Parent=MS.gene78182.t1
chr2.3	CDS	35953418	35954398	35953418	ID=cds.MS.gene78182.t1;Parent=MS.gene78182.t1

Gene Sequence

>MS.gene78182

ATGATCAAGAGGAGATACATGTACCTAACCGAAGAGATTTTGAAAGAGAATCCTAACTTGTGCACTTATATGGCACCTTCTTTGGATACTAGGCAAGACATGGTGGTAGTAGAGGCACCAAGACTAGGAAAGGAGGCAGCCGTGAAGGCTATAAAAGAATGGGGCCAACCAAAGTCAAAGATTACACACTTAATATTTTGCACTATAAGTGGTGTAGATATGCCTGGTGCCGATTACCAACTCACAAAACTCTTGGGTCTTCGCCCATATGTGAAAAGGTATATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTACTTCGCTTGGCCAAGGACTTGGCTGAGAACAACAAAGGTTCTCGTGTGTTGGTTGTTTGTTCAGAAGTTACTGCAATCACATTTTGTGGCCCTAGCGATACTCACTTAGACAACCTTGTTGGACAAGCTCTATTTGGAGATGGAGCTGCTGCAGTCATTGTTGGCTCTGACCCAATACCGGAAATTGAGAAACCTATATTTGAGTTAGTTTGGACAGCACAAACAATCGCTCCAAATAGTGAAGGAGCTATTTGTGGCCAACTTCGTGAATTTGGGCTATCATTTCATCTTCGTAAGGATGTTCCAGACATTGTCTCAAAGAATATTGATAATGCACTGGTTGAGGCATTCCAACCATTAGGTATTTCTGATTACAACTCAATCTTTTGGATTGCTCACTCTGGTGGACCCGCAATTCTAGACAAAATTGAGAAAAAGTTAGCCTTGAAACCTGAAAAGATGAGTGCCACGAGAAAAATGCTTAGTGAATATGGTAATATGTCAAGTGCATGTGTATTATTCATCTTAGATGAGATGAGAAACAAATCGGCTCAAGATGGACTAAAGACCACAGGAGAAGGGCTTGAATGGGGTGTGTTGTTGAGCTTTGGGCCAGGACTTACCATTGAAACAATTGTTCTCCATAGTGTGGCTATATGA

Protein sequence

>MS.gene78182.t1

MIKRRYMYLTEEILKENPNLCTYMAPSLDTRQDMVVVEAPRLGKEAAVKAIKEWGQPKSKITHLIFCTISGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGSRVLVVCSEVTAITFCGPSDTHLDNLVGQALFGDGAAAVIVGSDPIPEIEKPIFELVWTAQTIAPNSEGAICGQLREFGLSFHLRKDVPDIVSKNIDNALVEAFQPLGISDYNSIFWIAHSGGPAILDKIEKKLALKPEKMSATRKMLSEYGNMSSACVLFILDEMRNKSAQDGLKTTGEGLEWGVLLSFGPGLTIETIVLHSVAI