Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78829.t1 | XP_003604976.1 | 97.2 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 3.40E-235 | 823.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78829.t1 | Q56WD9 | 77.7 | 440 | 92 | 1 | 1 | 434 | 1 | 440 | 3.4e-191 | 669.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78829.t1 | G7JUJ9 | 97.2 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 2.5e-235 | 823.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene78829 | 0.822568 | 2.21E-53 | -1.69E-46 |
MS.gene049350 | MS.gene78829 | 0.804329 | 2.28E-49 | -1.69E-46 |
MS.gene049711 | MS.gene78829 | 0.804862 | 1.76E-49 | -1.69E-46 |
MS.gene049807 | MS.gene78829 | 0.83777 | 4.27E-57 | -1.69E-46 |
MS.gene050439 | MS.gene78829 | 0.804814 | 1.80E-49 | -1.69E-46 |
MS.gene051021 | MS.gene78829 | 0.80422 | 2.40E-49 | -1.69E-46 |
MS.gene051490 | MS.gene78829 | 0.801271 | 9.74E-49 | -1.69E-46 |
MS.gene051744 | MS.gene78829 | 0.823248 | 1.53E-53 | -1.69E-46 |
MS.gene051852 | MS.gene78829 | 0.803599 | 3.23E-49 | -1.69E-46 |
MS.gene052307 | MS.gene78829 | 0.827016 | 1.97E-54 | -1.69E-46 |
MS.gene052463 | MS.gene78829 | 0.826012 | 3.43E-54 | -1.69E-46 |
MS.gene052533 | MS.gene78829 | 0.810401 | 1.17E-50 | -1.69E-46 |
MS.gene052609 | MS.gene78829 | 0.824397 | 8.25E-54 | -1.69E-46 |
MS.gene053143 | MS.gene78829 | 0.828548 | 8.46E-55 | -1.69E-46 |
MS.gene053144 | MS.gene78829 | 0.832222 | 1.07E-55 | -1.69E-46 |
MS.gene05454 | MS.gene78829 | 0.803617 | 3.20E-49 | -1.69E-46 |
MS.gene054576 | MS.gene78829 | 0.801348 | 9.39E-49 | -1.69E-46 |
MS.gene054584 | MS.gene78829 | 0.818531 | 1.87E-52 | -1.69E-46 |
MS.gene055465 | MS.gene78829 | 0.813289 | 2.76E-51 | -1.69E-46 |
MS.gene055513 | MS.gene78829 | 0.829903 | 3.97E-55 | -1.69E-46 |
MS.gene055537 | MS.gene78829 | 0.817695 | 2.89E-52 | -1.69E-46 |
MS.gene055864 | MS.gene78829 | 0.803906 | 2.79E-49 | -1.69E-46 |
MS.gene058649 | MS.gene78829 | 0.811142 | 8.12E-51 | -1.69E-46 |
MS.gene058668 | MS.gene78829 | 0.842678 | 2.23E-58 | -1.69E-46 |
MS.gene059170 | MS.gene78829 | 0.82803 | 1.13E-54 | -1.69E-46 |
MS.gene059774 | MS.gene78829 | 0.858649 | 7.13E-63 | -1.69E-46 |
MS.gene059965 | MS.gene78829 | 0.824894 | 6.30E-54 | -1.69E-46 |
MS.gene060697 | MS.gene78829 | 0.857515 | 1.55E-62 | -1.69E-46 |
MS.gene061100 | MS.gene78829 | 0.813109 | 3.02E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78829.t1 | MTR_4g022430 | 97.241 | 435 | 12 | 0 | 1 | 435 | 1 | 435 | 0.0 | 864 |
MS.gene78829.t1 | MTR_1g047210 | 76.871 | 441 | 95 | 2 | 1 | 434 | 1 | 441 | 0.0 | 670 |
MS.gene78829.t1 | MTR_4g134090 | 37.624 | 404 | 221 | 12 | 45 | 431 | 7 | 396 | 9.13e-65 | 213 |
MS.gene78829.t1 | MTR_4g134090 | 37.037 | 405 | 226 | 10 | 43 | 431 | 12 | 403 | 1.52e-64 | 213 |
MS.gene78829.t1 | MTR_5g098310 | 37.368 | 380 | 209 | 11 | 45 | 407 | 16 | 383 | 7.00e-60 | 201 |
MS.gene78829.t1 | MTR_0449s0040 | 35.211 | 355 | 181 | 12 | 45 | 372 | 16 | 348 | 2.94e-44 | 158 |
MS.gene78829.t1 | MTR_4g134090 | 33.721 | 258 | 142 | 11 | 45 | 285 | 7 | 252 | 4.10e-22 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78829.t1 | AT2G33150 | 77.727 | 440 | 92 | 1 | 1 | 434 | 1 | 440 | 0.0 | 690 |
MS.gene78829.t1 | AT1G04710 | 77.136 | 433 | 97 | 1 | 1 | 433 | 1 | 431 | 0.0 | 671 |
MS.gene78829.t1 | AT5G48880 | 73.016 | 441 | 112 | 3 | 1 | 434 | 1 | 441 | 0.0 | 667 |
MS.gene78829.t1 | AT5G48880 | 73.016 | 441 | 112 | 3 | 1 | 434 | 1 | 441 | 0.0 | 667 |
MS.gene78829.t1 | AT5G48880 | 73.016 | 441 | 112 | 3 | 1 | 434 | 1 | 441 | 0.0 | 667 |
MS.gene78829.t1 | AT5G48880 | 77.354 | 393 | 87 | 1 | 44 | 434 | 6 | 398 | 0.0 | 641 |
MS.gene78829.t1 | AT5G48230 | 38.903 | 383 | 203 | 11 | 43 | 407 | 5 | 374 | 7.59e-65 | 213 |
MS.gene78829.t1 | AT5G48230 | 38.845 | 381 | 202 | 11 | 45 | 407 | 12 | 379 | 5.38e-64 | 211 |
MS.gene78829.t1 | AT5G47720 | 35.821 | 402 | 231 | 11 | 45 | 431 | 21 | 410 | 5.72e-63 | 209 |
MS.gene78829.t1 | AT5G47720 | 35.821 | 402 | 231 | 11 | 45 | 431 | 14 | 403 | 6.79e-63 | 209 |
MS.gene78829.t1 | AT5G47720 | 35.821 | 402 | 231 | 11 | 45 | 431 | 14 | 403 | 6.79e-63 | 209 |
MS.gene78829.t1 | AT5G47720 | 35.821 | 402 | 231 | 11 | 45 | 431 | 14 | 403 | 8.30e-63 | 208 |
MS.gene78829.t1 | AT5G47720 | 35.821 | 402 | 231 | 11 | 45 | 431 | 14 | 403 | 8.30e-63 | 208 |
Find 100 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTATTCCTGCAAGAAAT+TGG | 0.182136 | 4.2:+80446015 | MS.gene78829:CDS |
CAAAAGGGGCTTCCTATTCT+TGG | 0.273850 | 4.2:+80445185 | MS.gene78829:CDS |
TTCCTATTCTTGGAATCTTC+AGG | 0.284215 | 4.2:+80445195 | MS.gene78829:CDS |
AATGGTGGTGCCATGGCTTT+TGG | 0.285762 | 4.2:+80446064 | MS.gene78829:CDS |
ATGACACAAGATAGTATTTC+GGG | 0.297886 | 4.2:+80442599 | MS.gene78829:CDS |
GTTTATTCCTGCAAGAAATT+GGG | 0.319184 | 4.2:+80446016 | MS.gene78829:CDS |
TATCCGACCAAACACAAATT+TGG | 0.330622 | 4.2:+80444909 | MS.gene78829:CDS |
TCTTATTTGATGAAGGAATT+GGG | 0.337864 | 4.2:+80442561 | MS.gene78829:intron |
TGAGATGAAGTAACTGAATA+TGG | 0.342619 | 4.2:-80440452 | None:intergenic |
ATCAAGCCCCAATTTCTTGC+AGG | 0.345463 | 4.2:-80446023 | None:intergenic |
TCAATTGCTCTTTCTGATCC+TGG | 0.360216 | 4.2:-80442068 | None:intergenic |
TATGACACAAGATAGTATTT+CGG | 0.364038 | 4.2:+80442598 | MS.gene78829:CDS |
GCCGCAGCTGCAACAGCATC+TGG | 0.368332 | 4.2:+80444719 | MS.gene78829:CDS |
CAGGCTTCATTATGTTCTGC+TGG | 0.373788 | 4.2:+80440582 | MS.gene78829:intron |
GCTGAAGCCTGCATTCAAAA+AGG | 0.374024 | 4.2:+80444945 | MS.gene78829:CDS |
TGAAGGAATTGGGGCTGGAT+TGG | 0.386923 | 4.2:+80442571 | MS.gene78829:intron |
AGATCTACCAAATTTGTGTT+TGG | 0.390275 | 4.2:-80444916 | None:intergenic |
CCGTGACTGTCTTCTTCCTA+TGG | 0.396967 | 4.2:+80444528 | MS.gene78829:CDS |
AAGTTTGTGGATCCTAAAAC+TGG | 0.399124 | 4.2:+80444850 | MS.gene78829:intron |
CGTGGAAAGGATTGTCGCTT+TGG | 0.413346 | 4.2:+80446259 | MS.gene78829:CDS |
GAACCCACCATTGTAGAAAC+TGG | 0.423116 | 4.2:-80444764 | None:intergenic |
TGGTGTAGATCCTGCTGTCA+TGG | 0.432233 | 4.2:+80445801 | MS.gene78829:CDS |
GAGAAGTGTGGCTGTACAAA+AGG | 0.433377 | 4.2:+80445169 | MS.gene78829:CDS |
TTATGTTCTGCTGGACAAAC+TGG | 0.434501 | 4.2:+80440591 | MS.gene78829:CDS |
ACTGAGGCAAGTAGATCATC+TGG | 0.434573 | 4.2:-80441314 | None:intergenic |
TACATTTCAGGTTCTGGTAT+GGG | 0.444350 | 4.2:+80446410 | MS.gene78829:intron |
CTGCTGCACCATCACTAACT+TGG | 0.445534 | 4.2:-80445130 | None:intergenic |
AAAGCTGGGTTCTATGACAT+TGG | 0.454280 | 4.2:+80442465 | MS.gene78829:CDS |
CCAGCAGATTTCACTGCAGC+TGG | 0.456335 | 4.2:-80445847 | None:intergenic |
TTCTTGATTACCTGCAGTTG+TGG | 0.457288 | 4.2:-80444974 | None:intergenic |
GAAGTAGGCGACATAGTTGT+AGG | 0.467982 | 4.2:+80442032 | MS.gene78829:CDS |
ATCAGCAACTGCTTGAAGTC+CGG | 0.469800 | 4.2:-80442427 | None:intergenic |
ATACATTTCAGGTTCTGGTA+TGG | 0.474139 | 4.2:+80446409 | MS.gene78829:intron |
ATGTTACCTGTGGCGCCTAA+AGG | 0.474337 | 4.2:-80446091 | None:intergenic |
GAGAATGTTGCACAGCGTTA+CGG | 0.482335 | 4.2:+80444562 | MS.gene78829:CDS |
ACCAGATGCTGTTGCAGCTG+CGG | 0.484759 | 4.2:-80444720 | None:intergenic |
CAAACAAAGGTCAATGTCAA+TGG | 0.487757 | 4.2:+80446046 | MS.gene78829:CDS |
TTTGATGAAGGAATTGGGGC+TGG | 0.488144 | 4.2:+80442566 | MS.gene78829:intron |
GATCCTGCTGTCATGGGTGT+TGG | 0.497368 | 4.2:+80445808 | MS.gene78829:CDS |
GTCAATAGACAATGTTCGTC+CGG | 0.498701 | 4.2:+80442408 | MS.gene78829:CDS |
GGACATCCTTTAGGCGCCAC+AGG | 0.500067 | 4.2:+80446085 | MS.gene78829:CDS |
GTTGCTGCTTACATAAAAGC+TGG | 0.510537 | 4.2:+80442450 | MS.gene78829:CDS |
CTACCAAATTTGTGTTTGGT+CGG | 0.515258 | 4.2:-80444912 | None:intergenic |
CTTATTTGATGAAGGAATTG+GGG | 0.515706 | 4.2:+80442562 | MS.gene78829:intron |
GGTGTAATCTCGATGTGTAT+AGG | 0.516266 | 4.2:+80446280 | MS.gene78829:CDS |
CTATTTGCAAAGCAAAGCGT+GGG | 0.519769 | 4.2:+80441273 | MS.gene78829:CDS |
TTTATTCCTGCAAGAAATTG+GGG | 0.520297 | 4.2:+80446017 | MS.gene78829:CDS |
AGCTGCGGCAGTATTTGAAA+GGG | 0.523584 | 4.2:+80446433 | MS.gene78829:CDS |
CGTGACTGTCTTCTTCCTAT+GGG | 0.524327 | 4.2:+80444529 | MS.gene78829:CDS |
GGTGTAGATCCTGCTGTCAT+GGG | 0.527409 | 4.2:+80445802 | MS.gene78829:CDS |
AGAAGTGTGGCTGTACAAAA+GGG | 0.529709 | 4.2:+80445170 | MS.gene78829:CDS |
ATTTCATGCTTACAGCAGCC+TGG | 0.533043 | 4.2:-80444606 | None:intergenic |
GCAGCTGGAATAGCAAAAGC+TGG | 0.539208 | 4.2:-80445832 | None:intergenic |
CCAGCTGCAGTGAAATCTGC+TGG | 0.541500 | 4.2:+80445847 | MS.gene78829:CDS |
GAGCTGCGGCAGTATTTGAA+AGG | 0.546535 | 4.2:+80446432 | MS.gene78829:CDS |
TGAGATGAAGCGCCGTGGAA+AGG | 0.550315 | 4.2:+80446246 | MS.gene78829:CDS |
TGATTTGTATGAAATAAATG+AGG | 0.551392 | 4.2:+80445888 | MS.gene78829:CDS |
TTGCTGCTTACATAAAAGCT+GGG | 0.552144 | 4.2:+80442451 | MS.gene78829:CDS |
TACCTGAAGATTCCAAGAAT+AGG | 0.554484 | 4.2:-80445197 | None:intergenic |
GAAATTAGGTCGAGTCTCAC+AGG | 0.560910 | 4.2:+80444693 | MS.gene78829:intron |
GGACCAACACCCATGACAGC+AGG | 0.561197 | 4.2:-80445811 | None:intergenic |
ACTATGTCGCCTACTTCACT+TGG | 0.567748 | 4.2:-80442026 | None:intergenic |
ACAGTCACGGGCTTGTGCAA+AGG | 0.568802 | 4.2:-80444515 | None:intergenic |
AATGTGGAACCAAGTGAAGT+AGG | 0.571979 | 4.2:+80442017 | MS.gene78829:CDS |
AAGGATGGAACCACAACTGC+AGG | 0.572568 | 4.2:+80444964 | MS.gene78829:CDS |
AGTTAGTGATGGTGCAGCAG+CGG | 0.577291 | 4.2:+80445133 | MS.gene78829:CDS |
TAAAGGATGTCCAAAAGCCA+TGG | 0.584140 | 4.2:-80446074 | None:intergenic |
CATAGGAAGAAGACAGTCAC+GGG | 0.584715 | 4.2:-80444527 | None:intergenic |
CAATGTCAATGGTGGTGCCA+TGG | 0.590035 | 4.2:+80446057 | MS.gene78829:CDS |
TTCTCAGAAGTTATTCCCAT+AGG | 0.594952 | 4.2:-80444544 | None:intergenic |
AAGAGCAATTGAGTGCAGAA+TGG | 0.597887 | 4.2:+80442079 | MS.gene78829:CDS |
TCTACTTGCCTCAGTTCTCA+AGG | 0.598314 | 4.2:+80441322 | MS.gene78829:CDS |
GCGTTACGGTGTGACAAGGC+AGG | 0.598535 | 4.2:+80444576 | MS.gene78829:CDS |
AATCATTCCAGTTTCTACAA+TGG | 0.600799 | 4.2:+80444757 | MS.gene78829:CDS |
GACAAGGCAGGAACAAGACC+AGG | 0.604845 | 4.2:+80444588 | MS.gene78829:CDS |
GCTATTTGCAAAGCAAAGCG+TGG | 0.605886 | 4.2:+80441272 | MS.gene78829:CDS |
CACAGCGTTACGGTGTGACA+AGG | 0.607695 | 4.2:+80444572 | MS.gene78829:CDS |
AGGTTCTGGTATGGGAGCTG+CGG | 0.612004 | 4.2:+80446418 | MS.gene78829:intron |
ATTACTGTTTCTGTTGACGA+TGG | 0.615568 | 4.2:+80444886 | MS.gene78829:CDS |
TGTTCTGCTGGACAAACTGG+TGG | 0.623508 | 4.2:+80440594 | MS.gene78829:CDS |
AATGCTAGCCAAGTTAGTGA+TGG | 0.641945 | 4.2:+80445122 | MS.gene78829:CDS |
GACACAAGATAGTATTTCGG+GGG | 0.646224 | 4.2:+80442601 | MS.gene78829:CDS |
ACAAAGGTCAATGTCAATGG+TGG | 0.646397 | 4.2:+80446049 | MS.gene78829:CDS |
CCATAGGAAGAAGACAGTCA+CGG | 0.648285 | 4.2:-80444528 | None:intergenic |
TGTGATAGAGAAAACAAATG+TGG | 0.651302 | 4.2:+80442001 | MS.gene78829:CDS |
TGTGGATCCTAAAACTGGAG+AGG | 0.664054 | 4.2:+80444855 | MS.gene78829:CDS |
CAAAGCGACAATCCTTTCCA+CGG | 0.667560 | 4.2:-80446258 | None:intergenic |
GGTTCGCAAAACTAACCCAA+AGG | 0.669027 | 4.2:+80442622 | MS.gene78829:CDS |
GCTGCGGCAGTATTTGAAAG+GGG | 0.675279 | 4.2:+80446434 | MS.gene78829:CDS |
GAAGTGTGGCTGTACAAAAG+GGG | 0.677244 | 4.2:+80445171 | MS.gene78829:CDS |
ATTGGGGCTTGATCAAACAA+AGG | 0.679817 | 4.2:+80446033 | MS.gene78829:CDS |
TTGAATGAGATGAAGCGCCG+TGG | 0.683165 | 4.2:+80446241 | MS.gene78829:CDS |
GCTTCTCATGAAGAGAAGTG+TGG | 0.688912 | 4.2:+80445157 | MS.gene78829:CDS |
ATTTGCAAAGCAAAGCGTGG+GGG | 0.689702 | 4.2:+80441275 | MS.gene78829:CDS |
AAAACTTACAGAGAGATGAG+TGG | 0.693438 | 4.2:-80440480 | None:intergenic |
TGTCTATTGACAGTTCGAAG+CGG | 0.694158 | 4.2:-80442396 | None:intergenic |
TGACACAAGATAGTATTTCG+GGG | 0.700265 | 4.2:+80442600 | MS.gene78829:CDS |
TGGTGGATCCGAAAATGATG+TGG | 0.701586 | 4.2:+80440611 | MS.gene78829:CDS |
TATTTGCAAAGCAAAGCGTG+GGG | 0.719147 | 4.2:+80441274 | MS.gene78829:CDS |
AGTCGTTACCTTGAGAACTG+AGG | 0.722347 | 4.2:-80441330 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATATAAACTTATAAAAC+AGG | + | chr4.2:80445447-80445466 | MS.gene78829:intron | 10.0% |
!!! | TAATGTTTTCAAAAATTTTA+GGG | + | chr4.2:80441192-80441211 | MS.gene78829:intron | 10.0% |
!! | AAATAGATCATTTATATTGA+AGG | + | chr4.2:80440965-80440984 | MS.gene78829:intron | 15.0% |
!! | AACCTATTAAAATAATGAAA+AGG | - | chr4.2:80444491-80444510 | None:intergenic | 15.0% |
!! | AACTTATCAACTATAAAAAA+TGG | + | chr4.2:80441902-80441921 | MS.gene78829:intron | 15.0% |
!! | AATCTATGAAAAGATTATAA+AGG | + | chr4.2:80444650-80444669 | MS.gene78829:intron | 15.0% |
!! | ACATTAGTAAACAAAAAAAT+AGG | - | chr4.2:80441178-80441197 | None:intergenic | 15.0% |
!! | ATAAGTAAAAAAAGTTTCAA+AGG | - | chr4.2:80444463-80444482 | None:intergenic | 15.0% |
!! | ATTGGTAAATACAAAAATAT+TGG | + | chr4.2:80441579-80441598 | MS.gene78829:intron | 15.0% |
!! | ATTTGTGTAATATTTACTAT+AGG | - | chr4.2:80445508-80445527 | None:intergenic | 15.0% |
!! | CAAAAAACTAAAGAATAAAA+AGG | - | chr4.2:80441145-80441164 | None:intergenic | 15.0% |
!! | TAAATACAAAAATATTGGAA+AGG | + | chr4.2:80441584-80441603 | MS.gene78829:intron | 15.0% |
!! | TAGAAATAATTATATCACTT+TGG | - | chr4.2:80443196-80443215 | None:intergenic | 15.0% |
!! | TAGTAAATATTACACAAATT+TGG | + | chr4.2:80445509-80445528 | MS.gene78829:intron | 15.0% |
!!! | AACCTTTTCATTATTTTAAT+AGG | + | chr4.2:80444486-80444505 | MS.gene78829:intron | 15.0% |
!!! | AATTCTTTTAATGTGAAATT+AGG | + | chr4.2:80444679-80444698 | MS.gene78829:intron | 15.0% |
!!! | ATAACACTACAAATTTTAAA+AGG | - | chr4.2:80444808-80444827 | None:intergenic | 15.0% |
!!! | ATCTTTTCATAGATTTTTAT+AGG | - | chr4.2:80444645-80444664 | None:intergenic | 15.0% |
!!! | CTAATGTTTTCAAAAATTTT+AGG | + | chr4.2:80441191-80441210 | MS.gene78829:intron | 15.0% |
!!! | CTTTTTATTCTTTAGTTTTT+TGG | + | chr4.2:80441143-80441162 | MS.gene78829:intron | 15.0% |
!!! | TAATTTTCACAAGTTATTAT+CGG | + | chr4.2:80440725-80440744 | MS.gene78829:intron | 15.0% |
!!! | TTTACTGTTTTTAAATTTGA+AGG | - | chr4.2:80445753-80445772 | None:intergenic | 15.0% |
!! | AACAAAAACAGATAAATAAG+CGG | - | chr4.2:80441535-80441554 | None:intergenic | 20.0% |
!! | AACTGAAGAAATTATTTATC+AGG | - | chr4.2:80442674-80442693 | None:intergenic | 20.0% |
!! | AGAAAACTTTATTACAATCT+AGG | - | chr4.2:80444395-80444414 | None:intergenic | 20.0% |
!! | AGTAAAAGTTGAGATAAATA+AGG | + | chr4.2:80443051-80443070 | MS.gene78829:intron | 20.0% |
!! | ATAACAGGATTTATTAATTG+TGG | + | chr4.2:80441657-80441676 | MS.gene78829:intron | 20.0% |
!! | CTTGAAGATATTATTATGTT+GGG | - | chr4.2:80443767-80443786 | None:intergenic | 20.0% |
!! | TCAAAAAAAGAAATGGAATA+AGG | - | chr4.2:80446322-80446341 | None:intergenic | 20.0% |
!! | TCAATATTTATCTAGATACA+TGG | + | chr4.2:80445366-80445385 | MS.gene78829:intron | 20.0% |
!! | TTGATTTAATGATGACTTTA+TGG | + | chr4.2:80446154-80446173 | MS.gene78829:intron | 20.0% |
!!! | CAGTTTTCTAAAATTACTAT+AGG | + | chr4.2:80440884-80440903 | MS.gene78829:intron | 20.0% |
!!! | GATTTTGTTTATAAAGTTTG+TGG | + | chr4.2:80444837-80444856 | MS.gene78829:intron | 20.0% |
!!! | TATCTTATGCTTTATTAGTT+TGG | + | chr4.2:80441938-80441957 | MS.gene78829:intron | 20.0% |
!!! | TGATTTGTATGAAATAAATG+AGG | + | chr4.2:80445888-80445907 | MS.gene78829:CDS | 20.0% |
!!! | TTCTTCTTTTGCTAAATTTT+TGG | + | chr4.2:80444999-80445018 | MS.gene78829:intron | 20.0% |
!!! | TTTTAAAAGGAAATTCATCT+TGG | - | chr4.2:80444795-80444814 | None:intergenic | 20.0% |
! | AAAAATGTTCCTAATTCGAT+AGG | + | chr4.2:80445684-80445703 | MS.gene78829:intron | 25.0% |
! | AAACAAGTACTCTTAATACT+TGG | - | chr4.2:80442992-80443011 | None:intergenic | 25.0% |
! | AACAGTAAATTCAATGTTGT+AGG | + | chr4.2:80445764-80445783 | MS.gene78829:intron | 25.0% |
! | AAGCATTAAACTCTTGATTA+TGG | + | chr4.2:80443312-80443331 | MS.gene78829:intron | 25.0% |
! | AAGTTTCAAAGGAAAATATG+TGG | - | chr4.2:80444452-80444471 | None:intergenic | 25.0% |
! | AATCAAGAGTTTAATGCTTT+CGG | - | chr4.2:80443311-80443330 | None:intergenic | 25.0% |
! | ACAGATTATTAGTAGCTTAA+TGG | + | chr4.2:80446370-80446389 | MS.gene78829:intron | 25.0% |
! | ACTGTTTACTCATATCATTA+TGG | - | chr4.2:80445225-80445244 | None:intergenic | 25.0% |
! | ACTTTATGTTGCTATGATAA+AGG | + | chr4.2:80445608-80445627 | MS.gene78829:intron | 25.0% |
! | ATACGTCTTCAATATTAACT+GGG | - | chr4.2:80440654-80440673 | None:intergenic | 25.0% |
! | ATGAAGAACTTATTGAAATG+AGG | - | chr4.2:80442803-80442822 | None:intergenic | 25.0% |
! | ATGATAAGTAAAGCGTAATA+AGG | + | chr4.2:80444105-80444124 | MS.gene78829:intron | 25.0% |
! | ATTAAATCAATCTGTTCAAC+TGG | - | chr4.2:80446144-80446163 | None:intergenic | 25.0% |
! | CAATAAGATTCAAGATGATT+TGG | - | chr4.2:80443422-80443441 | None:intergenic | 25.0% |
! | CAATAATCAATGAGAAAATG+TGG | - | chr4.2:80442871-80442890 | None:intergenic | 25.0% |
! | CAGATTATTAGTAGCTTAAT+GGG | + | chr4.2:80446371-80446390 | MS.gene78829:intron | 25.0% |
! | CCAACATAATAATATCTTCA+AGG | + | chr4.2:80443765-80443784 | MS.gene78829:intron | 25.0% |
! | CCTTGAAGATATTATTATGT+TGG | - | chr4.2:80443768-80443787 | None:intergenic | 25.0% |
! | CTAGAGTAGTAATATATCTT+AGG | - | chr4.2:80443377-80443396 | None:intergenic | 25.0% |
! | GATTAGTGAACATTTATAAC+AGG | + | chr4.2:80441642-80441661 | MS.gene78829:intron | 25.0% |
! | GTAAACAAAAAAATAGGTTC+AGG | - | chr4.2:80441172-80441191 | None:intergenic | 25.0% |
! | TATCTAATAATGTATTTCCC+AGG | - | chr4.2:80445429-80445448 | None:intergenic | 25.0% |
! | TATGACACAAGATAGTATTT+CGG | + | chr4.2:80442598-80442617 | MS.gene78829:CDS | 25.0% |
! | TCATATATTGCAAGATCAAA+AGG | + | chr4.2:80443491-80443510 | MS.gene78829:intron | 25.0% |
! | TCTAACTATATTTAACTGCA+GGG | + | chr4.2:80445099-80445118 | MS.gene78829:intron | 25.0% |
! | TGCAGTTAAATATAGTTAGA+GGG | - | chr4.2:80445099-80445118 | None:intergenic | 25.0% |
! | TTATAAAGCTAGAATTCGTA+TGG | - | chr4.2:80443134-80443153 | None:intergenic | 25.0% |
! | TTTGTACTGTTATACATTTC+AGG | + | chr4.2:80446398-80446417 | MS.gene78829:intron | 25.0% |
!! | AATAAGGATTGAAACTTGTT+AGG | + | chr4.2:80443067-80443086 | MS.gene78829:intron | 25.0% |
!! | ATATATCATGTGCATGTTTT+TGG | - | chr4.2:80442245-80442264 | None:intergenic | 25.0% |
!! | ATTTATATTGAAGGTGTGTT+TGG | + | chr4.2:80440974-80440993 | MS.gene78829:intron | 25.0% |
!! | ATTTTCTTAGTTTCTCTCTT+AGG | - | chr4.2:80443728-80443747 | None:intergenic | 25.0% |
!! | CAAAATATCTAGAGTTCATT+TGG | + | chr4.2:80441869-80441888 | MS.gene78829:intron | 25.0% |
!! | CTAAGCATTTATCAATTTTG+TGG | + | chr4.2:80445965-80445984 | MS.gene78829:intron | 25.0% |
!! | TCTTATTTGATGAAGGAATT+GGG | + | chr4.2:80442561-80442580 | MS.gene78829:intron | 25.0% |
!! | TTTCTTTAAAGAGAGAAGTA+AGG | - | chr4.2:80443692-80443711 | None:intergenic | 25.0% |
!!! | ATCTGTTTATTTTTCTCCTT+AGG | - | chr4.2:80446356-80446375 | None:intergenic | 25.0% |
AAATATCTCAATGTTACCTG+TGG | - | chr4.2:80446104-80446123 | None:intergenic | 30.0% | |
AACCATGGAAAAACACTATT+TGG | - | chr4.2:80444033-80444052 | None:intergenic | 30.0% | |
AATCATTCCAGTTTCTACAA+TGG | + | chr4.2:80444757-80444776 | MS.gene78829:CDS | 30.0% | |
AATGTGAATCGAATAGACTA+TGG | + | chr4.2:80442710-80442729 | MS.gene78829:intron | 30.0% | |
AATGTGCAATAGAAAGTTGT+TGG | - | chr4.2:80445943-80445962 | None:intergenic | 30.0% | |
ACAAGCACATGATATTTCAT+TGG | + | chr4.2:80442162-80442181 | MS.gene78829:intron | 30.0% | |
ACCATGGAAAAACACTATTT+GGG | - | chr4.2:80444032-80444051 | None:intergenic | 30.0% | |
ACTTTATTACAATCTAGGTG+TGG | - | chr4.2:80444390-80444409 | None:intergenic | 30.0% | |
AGATCTACCAAATTTGTGTT+TGG | - | chr4.2:80444919-80444938 | None:intergenic | 30.0% | |
AGGATTTATTAATTGTGGCT+GGG | + | chr4.2:80441662-80441681 | MS.gene78829:intron | 30.0% | |
ATATGAGTAAACAGTCACTT+TGG | + | chr4.2:80445230-80445249 | MS.gene78829:intron | 30.0% | |
ATGACACAAGATAGTATTTC+GGG | + | chr4.2:80442599-80442618 | MS.gene78829:CDS | 30.0% | |
CAAATAAGAGGAAGAAGATT+AGG | - | chr4.2:80442550-80442569 | None:intergenic | 30.0% | |
CAACTACTACGTAAGAAAAA+TGG | + | chr4.2:80441620-80441639 | MS.gene78829:intron | 30.0% | |
CAATTCCTTCATCAAATAAG+AGG | - | chr4.2:80442562-80442581 | None:intergenic | 30.0% | |
CTCTAACTATATTTAACTGC+AGG | + | chr4.2:80445098-80445117 | MS.gene78829:intron | 30.0% | |
CTGCAGTTAAATATAGTTAG+AGG | - | chr4.2:80445100-80445119 | None:intergenic | 30.0% | |
CTTATTTGATGAAGGAATTG+GGG | + | chr4.2:80442562-80442581 | MS.gene78829:intron | 30.0% | |
CTTTATTACAATCTAGGTGT+GGG | - | chr4.2:80444389-80444408 | None:intergenic | 30.0% | |
GATACGTCTTCAATATTAAC+TGG | - | chr4.2:80440655-80440674 | None:intergenic | 30.0% | |
GCAGTTAAATATAGTTAGAG+GGG | - | chr4.2:80445098-80445117 | None:intergenic | 30.0% | |
GGAAAATATGTGGAATTGAT+AGG | - | chr4.2:80444442-80444461 | None:intergenic | 30.0% | |
GTCTGCTTCAAAAAAAGAAA+TGG | - | chr4.2:80446329-80446348 | None:intergenic | 30.0% | |
GTTAATATTGAAGACGTATC+TGG | + | chr4.2:80440655-80440674 | MS.gene78829:intron | 30.0% | |
GTTTATTCCTGCAAGAAATT+GGG | + | chr4.2:80446016-80446035 | MS.gene78829:CDS | 30.0% | |
TAAACGATAACAAAGTCGAT+CGG | + | chr4.2:80443249-80443268 | MS.gene78829:intron | 30.0% | |
TAGAATTCGTATGGATCATT+AGG | - | chr4.2:80443125-80443144 | None:intergenic | 30.0% | |
TAGACTCTATTTACATGTCA+TGG | + | chr4.2:80442508-80442527 | MS.gene78829:intron | 30.0% | |
TGAGATGAAGTAACTGAATA+TGG | - | chr4.2:80440455-80440474 | None:intergenic | 30.0% | |
TGTGATAGAGAAAACAAATG+TGG | + | chr4.2:80442001-80442020 | MS.gene78829:CDS | 30.0% | |
TGTTTATTCCTGCAAGAAAT+TGG | + | chr4.2:80446015-80446034 | MS.gene78829:CDS | 30.0% | |
TGTTTGGATTAACCATGATT+GGG | + | chr4.2:80442736-80442755 | MS.gene78829:intron | 30.0% | |
TTAAATGTTAGTGTCATGTG+CGG | + | chr4.2:80440754-80440773 | MS.gene78829:intron | 30.0% | |
TTCGATTACTATTAGTCAAC+TGG | + | chr4.2:80441352-80441371 | MS.gene78829:intron | 30.0% | |
TTGTTATCGTTTAAGGGATT+TGG | - | chr4.2:80443242-80443261 | None:intergenic | 30.0% | |
TTTATTCCTGCAAGAAATTG+GGG | + | chr4.2:80446017-80446036 | MS.gene78829:CDS | 30.0% | |
! | ATAGTGTTTTTCCATGGTTT+TGG | + | chr4.2:80444034-80444053 | MS.gene78829:intron | 30.0% |
! | ATCGACTTTGTTATCGTTTA+AGG | - | chr4.2:80443249-80443268 | None:intergenic | 30.0% |
! | CATTTTTCTTACGTAGTAGT+TGG | - | chr4.2:80441622-80441641 | None:intergenic | 30.0% |
! | CTCTTATTTGATGAAGGAAT+TGG | + | chr4.2:80442560-80442579 | MS.gene78829:intron | 30.0% |
! | TCGACTTTGTTATCGTTTAA+GGG | - | chr4.2:80443248-80443267 | None:intergenic | 30.0% |
! | TTATCTAGATACATGGACTA+AGG | + | chr4.2:80445373-80445392 | MS.gene78829:intron | 30.0% |
! | TTCTTCCTCTTATTTGATGA+AGG | + | chr4.2:80442554-80442573 | MS.gene78829:intron | 30.0% |
!! | ATTTAATTAGCTTGTCCTAC+AGG | - | chr4.2:80445538-80445557 | None:intergenic | 30.0% |
!! | TTTATTTTTCTCCTTAGGCA+TGG | - | chr4.2:80446351-80446370 | None:intergenic | 30.0% |
!!! | TTGTTTTGTTTTTCACTTGC+AGG | + | chr4.2:80440563-80440582 | MS.gene78829:intron | 30.0% |
AAAACAGGCATCTAGATGTA+GGG | + | chr4.2:80445462-80445481 | MS.gene78829:intron | 35.0% | |
AAAACTTACAGAGAGATGAG+TGG | - | chr4.2:80440483-80440502 | None:intergenic | 35.0% | |
AAACGTAGGATTCACTTTAG+TGG | + | chr4.2:80441773-80441792 | MS.gene78829:intron | 35.0% | |
AAGTTTGTGGATCCTAAAAC+TGG | + | chr4.2:80444850-80444869 | MS.gene78829:intron | 35.0% | |
AGAGATTGTAAAACTGACCT+GGG | - | chr4.2:80442124-80442143 | None:intergenic | 35.0% | |
ATCTTCAAGGAATAGCAAGT+GGG | + | chr4.2:80443778-80443797 | MS.gene78829:intron | 35.0% | |
ATGCGACTTAAATGTACCTT+TGG | - | chr4.2:80442641-80442660 | None:intergenic | 35.0% | |
ATTCCAGTTTCTACAATGGT+GGG | + | chr4.2:80444761-80444780 | MS.gene78829:intron | 35.0% | |
ATTTGTATATCGTCTCCACA+GGG | + | chr4.2:80442925-80442944 | MS.gene78829:intron | 35.0% | |
CAAACAAAGGTCAATGTCAA+TGG | + | chr4.2:80446046-80446065 | MS.gene78829:CDS | 35.0% | |
CACATGATATTTCATTGGCA+TGG | + | chr4.2:80442167-80442186 | MS.gene78829:intron | 35.0% | |
CACCAAACAAGACAAAAACA+CGG | - | chr4.2:80440921-80440940 | None:intergenic | 35.0% | |
CAGCGTATGAATAAGAGATA+AGG | + | chr4.2:80444299-80444318 | MS.gene78829:intron | 35.0% | |
CAGGATTTATTAATTGTGGC+TGG | + | chr4.2:80441661-80441680 | MS.gene78829:intron | 35.0% | |
CGTATGAATAAGAGATAAGG+TGG | + | chr4.2:80444302-80444321 | MS.gene78829:intron | 35.0% | |
CTAATTCGATAGGAAAAGCT+AGG | + | chr4.2:80445694-80445713 | MS.gene78829:intron | 35.0% | |
CTACCAAATTTGTGTTTGGT+CGG | - | chr4.2:80444915-80444934 | None:intergenic | 35.0% | |
CTGATTAAAGACCAAAACCA+TGG | - | chr4.2:80444048-80444067 | None:intergenic | 35.0% | |
CTTGCTTTGCAAGTAATTGA+AGG | - | chr4.2:80444157-80444176 | None:intergenic | 35.0% | |
GAATAGACTATGGTTGTGTT+TGG | + | chr4.2:80442720-80442739 | MS.gene78829:intron | 35.0% | |
GACAACAAAGTGGTTGTTAT+AGG | - | chr4.2:80441458-80441477 | None:intergenic | 35.0% | |
GACTAAGGAATTAGATACCT+GGG | + | chr4.2:80445409-80445428 | MS.gene78829:intron | 35.0% | |
GATTAGGCCAAAACATTACA+AGG | - | chr4.2:80442534-80442553 | None:intergenic | 35.0% | |
GCTCATGAATAAGGAATCAT+AGG | - | chr4.2:80441970-80441989 | None:intergenic | 35.0% | |
GGACATATTCACAAGGTATA+AGG | - | chr4.2:80445077-80445096 | None:intergenic | 35.0% | |
GTAGCTAAACACTCTTTGTT+AGG | - | chr4.2:80443550-80443569 | None:intergenic | 35.0% | |
GTGTTTGGATTAACCATGAT+TGG | + | chr4.2:80442735-80442754 | MS.gene78829:intron | 35.0% | |
GTTCAACTGGTGAAGTAAAT+AGG | - | chr4.2:80446131-80446150 | None:intergenic | 35.0% | |
TAAAACAGGCATCTAGATGT+AGG | + | chr4.2:80445461-80445480 | MS.gene78829:intron | 35.0% | |
TACCTGAAGATTCCAAGAAT+AGG | - | chr4.2:80445200-80445219 | None:intergenic | 35.0% | |
TAGAGATTGTAAAACTGACC+TGG | - | chr4.2:80442125-80442144 | None:intergenic | 35.0% | |
TAGATCATATAGAGTGAGAG+TGG | - | chr4.2:80443669-80443688 | None:intergenic | 35.0% | |
TAGTTAACTCCTCAAAACGT+AGG | + | chr4.2:80441759-80441778 | MS.gene78829:intron | 35.0% | |
TATATCACTTTGGACACGAA+GGG | - | chr4.2:80443186-80443205 | None:intergenic | 35.0% | |
TATCCGACCAAACACAAATT+TGG | + | chr4.2:80444909-80444928 | MS.gene78829:CDS | 35.0% | |
TATCTTCAAGGAATAGCAAG+TGG | + | chr4.2:80443777-80443796 | MS.gene78829:intron | 35.0% | |
TATTTGTATATCGTCTCCAC+AGG | + | chr4.2:80442924-80442943 | MS.gene78829:intron | 35.0% | |
TGACACAAGATAGTATTTCG+GGG | + | chr4.2:80442600-80442619 | MS.gene78829:CDS | 35.0% | |
TGACTAAAAAGACACGTTCA+TGG | - | chr4.2:80445323-80445342 | None:intergenic | 35.0% | |
TGACTTTATGGTGCTTACAT+TGG | + | chr4.2:80446166-80446185 | MS.gene78829:intron | 35.0% | |
TGCGACTTAAATGTACCTTT+GGG | - | chr4.2:80442640-80442659 | None:intergenic | 35.0% | |
TGTTTAGCTACACATCATCA+TGG | + | chr4.2:80443559-80443578 | MS.gene78829:intron | 35.0% | |
TTATATCACTTTGGACACGA+AGG | - | chr4.2:80443187-80443206 | None:intergenic | 35.0% | |
TTCCATAAAACTCCCAATCA+TGG | - | chr4.2:80442751-80442770 | None:intergenic | 35.0% | |
TTCCTATTCTTGGAATCTTC+AGG | + | chr4.2:80445195-80445214 | MS.gene78829:CDS | 35.0% | |
TTCTCAGAAGTTATTCCCAT+AGG | - | chr4.2:80444547-80444566 | None:intergenic | 35.0% | |
! | AAAGTGAATCCTACGTTTTG+AGG | - | chr4.2:80441771-80441790 | None:intergenic | 35.0% |
! | AACCATGATTGGGAGTTTTA+TGG | + | chr4.2:80442746-80442765 | MS.gene78829:intron | 35.0% |
! | ATAGTTGTAGGCACAGTTTT+AGG | + | chr4.2:80442044-80442063 | MS.gene78829:CDS | 35.0% |
! | ATATAGAGTGAGAGTGGTTT+TGG | - | chr4.2:80443663-80443682 | None:intergenic | 35.0% |
! | GGACTAAGGTATCTAATACA+TGG | + | chr4.2:80445387-80445406 | MS.gene78829:intron | 35.0% |
! | GGTATCTAATACATGGACTA+AGG | + | chr4.2:80445394-80445413 | MS.gene78829:intron | 35.0% |
! | TACGATGACCACATCATTTT+CGG | - | chr4.2:80440622-80440641 | None:intergenic | 35.0% |
! | TTGCTGCTTACATAAAAGCT+GGG | + | chr4.2:80442451-80442470 | MS.gene78829:CDS | 35.0% |
! | TTTGGAGAGGAATTTAGAGT+GGG | + | chr4.2:80444347-80444366 | MS.gene78829:intron | 35.0% |
!! | ATACATTTCAGGTTCTGGTA+TGG | + | chr4.2:80446409-80446428 | MS.gene78829:intron | 35.0% |
!! | ATTACTGTTTCTGTTGACGA+TGG | + | chr4.2:80444886-80444905 | MS.gene78829:CDS | 35.0% |
!! | CTAGCTTTTCCTATCGAATT+AGG | - | chr4.2:80445696-80445715 | None:intergenic | 35.0% |
!! | CTGTTATACATTTCAGGTTC+TGG | + | chr4.2:80446404-80446423 | MS.gene78829:intron | 35.0% |
!! | GCATTTGCTGTTCTAACAAT+TGG | + | chr4.2:80441561-80441580 | MS.gene78829:intron | 35.0% |
!! | TACATTTCAGGTTCTGGTAT+GGG | + | chr4.2:80446410-80446429 | MS.gene78829:intron | 35.0% |
!! | TTTTGGAGAGGAATTTAGAG+TGG | + | chr4.2:80444346-80444365 | MS.gene78829:intron | 35.0% |
!!! | TCAATTTTGTGGTCTTGTGT+AGG | + | chr4.2:80445976-80445995 | MS.gene78829:intron | 35.0% |
AAAGCTGGGTTCTATGACAT+TGG | + | chr4.2:80442465-80442484 | MS.gene78829:CDS | 40.0% | |
AAGAGCAATTGAGTGCAGAA+TGG | + | chr4.2:80442079-80442098 | MS.gene78829:CDS | 40.0% | |
AAGCCTGCATTCAAAAAGGA+TGG | + | chr4.2:80444949-80444968 | MS.gene78829:CDS | 40.0% | |
AAGCTGCCATGTCATAAATG+AGG | + | chr4.2:80443885-80443904 | MS.gene78829:intron | 40.0% | |
AATAGCAGTACGATATGCAC+TGG | - | chr4.2:80441258-80441277 | None:intergenic | 40.0% | |
AATGCTAGCCAAGTTAGTGA+TGG | + | chr4.2:80445122-80445141 | MS.gene78829:CDS | 40.0% | |
AATGTGGAACCAAGTGAAGT+AGG | + | chr4.2:80442017-80442036 | MS.gene78829:CDS | 40.0% | |
ACAAAGGTCAATGTCAATGG+TGG | + | chr4.2:80446049-80446068 | MS.gene78829:CDS | 40.0% | |
ACAACTGCAGGTAATCAAGA+AGG | + | chr4.2:80444976-80444995 | MS.gene78829:intron | 40.0% | |
ACACAAATTTGGCATCCTGT+AGG | + | chr4.2:80445520-80445539 | MS.gene78829:intron | 40.0% | |
ACACTCTTTGTTAGGATGAG+AGG | - | chr4.2:80443542-80443561 | None:intergenic | 40.0% | |
ACCTGACAGTAAAAGACAGT+AGG | - | chr4.2:80446200-80446219 | None:intergenic | 40.0% | |
ACGAAGTTAAACAGAGCACA+AGG | - | chr4.2:80445034-80445053 | None:intergenic | 40.0% | |
ATGCTTTCGGATGCTTAATC+AGG | - | chr4.2:80443298-80443317 | None:intergenic | 40.0% | |
ATTGGGGCTTGATCAAACAA+AGG | + | chr4.2:80446033-80446052 | MS.gene78829:CDS | 40.0% | |
CAAGGATAGCTTGAAAAGGA+AGG | + | chr4.2:80443590-80443609 | MS.gene78829:intron | 40.0% | |
CACAGTCTCTGCTTGAAAAT+TGG | - | chr4.2:80442376-80442395 | None:intergenic | 40.0% | |
CATTCCAGTTTCTACAATGG+TGG | + | chr4.2:80444760-80444779 | MS.gene78829:intron | 40.0% | |
CTACAGAGAGCTCATGAATA+AGG | - | chr4.2:80441979-80441998 | None:intergenic | 40.0% | |
CTATTTGCAAAGCAAAGCGT+GGG | + | chr4.2:80441273-80441292 | MS.gene78829:CDS | 40.0% | |
CTTATTCATGAGCTCTCTGT+AGG | + | chr4.2:80441977-80441996 | MS.gene78829:intron | 40.0% | |
CTTGCAAGGATAGCTTGAAA+AGG | + | chr4.2:80443586-80443605 | MS.gene78829:intron | 40.0% | |
GACACAAGATAGTATTTCGG+GGG | + | chr4.2:80442601-80442620 | MS.gene78829:CDS | 40.0% | |
GAGATAGATACACACGTTGA+AGG | + | chr4.2:80440796-80440815 | MS.gene78829:intron | 40.0% | |
GGACTAAGGAATTAGATACC+TGG | + | chr4.2:80445408-80445427 | MS.gene78829:intron | 40.0% | |
GGTCTTTAATCAGTGTCTTG+AGG | + | chr4.2:80444055-80444074 | MS.gene78829:intron | 40.0% | |
GGTGTAATCTCGATGTGTAT+AGG | + | chr4.2:80446280-80446299 | MS.gene78829:CDS | 40.0% | |
GTATGATGTTTGACACACGT+CGG | + | chr4.2:80440822-80440841 | MS.gene78829:intron | 40.0% | |
GTCAATAGACAATGTTCGTC+CGG | + | chr4.2:80442408-80442427 | MS.gene78829:CDS | 40.0% | |
TAAACAGAGCACAAGGAACT+TGG | - | chr4.2:80445027-80445046 | None:intergenic | 40.0% | |
TAAAGGATGTCCAAAAGCCA+TGG | - | chr4.2:80446077-80446096 | None:intergenic | 40.0% | |
TAAGGAATGCAGGCTACATA+TGG | - | chr4.2:80445059-80445078 | None:intergenic | 40.0% | |
TATTTGCAAAGCAAAGCGTG+GGG | + | chr4.2:80441274-80441293 | MS.gene78829:CDS | 40.0% | |
TCAATTGCTCTTTCTGATCC+TGG | - | chr4.2:80442071-80442090 | None:intergenic | 40.0% | |
TCACAAGGTATAAGGAATGC+AGG | - | chr4.2:80445069-80445088 | None:intergenic | 40.0% | |
TGACCTCCTCATTTATGACA+TGG | - | chr4.2:80443894-80443913 | None:intergenic | 40.0% | |
TGTCTATTGACAGTTCGAAG+CGG | - | chr4.2:80442399-80442418 | None:intergenic | 40.0% | |
TTAGAGGGGACATATTCACA+AGG | - | chr4.2:80445084-80445103 | None:intergenic | 40.0% | |
TTATGTTCTGCTGGACAAAC+TGG | + | chr4.2:80440591-80440610 | MS.gene78829:CDS | 40.0% | |
TTCTTGATTACCTGCAGTTG+TGG | - | chr4.2:80444977-80444996 | None:intergenic | 40.0% | |
! | ACTGGTGTTGAGTATAGTGT+AGG | + | chr4.2:80441370-80441389 | MS.gene78829:intron | 40.0% |
! | AGAAGTGTGGCTGTACAAAA+GGG | + | chr4.2:80445170-80445189 | MS.gene78829:CDS | 40.0% |
! | AGAATGGCTGCATTTTATGC+TGG | + | chr4.2:80442095-80442114 | MS.gene78829:CDS | 40.0% |
! | ATCACTCTATCCTTTTGTGC+AGG | - | chr4.2:80444087-80444106 | None:intergenic | 40.0% |
! | ATGGCTTTTGGACATCCTTT+AGG | + | chr4.2:80446076-80446095 | MS.gene78829:CDS | 40.0% |
! | ATTTAGAGTGGGAGAGAACT+AGG | + | chr4.2:80444358-80444377 | MS.gene78829:intron | 40.0% |
! | GCCCAAATAGTGTTTTTCCA+TGG | + | chr4.2:80444028-80444047 | MS.gene78829:intron | 40.0% |
! | GGATTAGTGAGTGCTATCTT+TGG | + | chr4.2:80444323-80444342 | MS.gene78829:intron | 40.0% |
! | GGCATTCAACGCTTATTTCT+CGG | + | chr4.2:80444126-80444145 | MS.gene78829:intron | 40.0% |
! | GTTCCATCCTTTTTGAATGC+AGG | - | chr4.2:80444955-80444974 | None:intergenic | 40.0% |
! | GTTGCTGCTTACATAAAAGC+TGG | + | chr4.2:80442450-80442469 | MS.gene78829:CDS | 40.0% |
! | TCCTACTGTCTTTTACTGTC+AGG | + | chr4.2:80446196-80446215 | MS.gene78829:intron | 40.0% |
! | TGTTTCTCCTCTCCAGTTTT+AGG | - | chr4.2:80444865-80444884 | None:intergenic | 40.0% |
!! | AACGTGTCATTTGAGGAAAG+CGG | + | chr4.2:80441798-80441817 | MS.gene78829:intron | 40.0% |
!! | AGTGGTTAACGTGTCATTTG+AGG | + | chr4.2:80441791-80441810 | MS.gene78829:intron | 40.0% |
!! | CTTTTCAAGCTATCCTTGCA+AGG | - | chr4.2:80443588-80443607 | None:intergenic | 40.0% |
!! | GAGGAAAGCGGTTTTATGTT+TGG | + | chr4.2:80441810-80441829 | MS.gene78829:intron | 40.0% |
!! | GTCCGTGTTTTTGTCTTGTT+TGG | + | chr4.2:80440916-80440935 | MS.gene78829:intron | 40.0% |
!! | GTGAGTGCTATCTTTGGTTT+TGG | + | chr4.2:80444329-80444348 | MS.gene78829:intron | 40.0% |
!!! | GTCATGGCCTTGTAATGTTT+TGG | + | chr4.2:80442524-80442543 | MS.gene78829:intron | 40.0% |
!!! | TGCTATCTTTGGTTTTGGAG+AGG | + | chr4.2:80444334-80444353 | MS.gene78829:intron | 40.0% |
ACTATGTCGCCTACTTCACT+TGG | - | chr4.2:80442029-80442048 | None:intergenic | 45.0% | |
ACTGAGGCAAGTAGATCATC+TGG | - | chr4.2:80441317-80441336 | None:intergenic | 45.0% | |
AGCTGCGGCAGTATTTGAAA+GGG | + | chr4.2:80446433-80446452 | MS.gene78829:CDS | 45.0% | |
AGTCGTTACCTTGAGAACTG+AGG | - | chr4.2:80441333-80441352 | None:intergenic | 45.0% | |
ATCAAGCCCCAATTTCTTGC+AGG | - | chr4.2:80446026-80446045 | None:intergenic | 45.0% | |
ATCAGCAACTGCTTGAAGTC+CGG | - | chr4.2:80442430-80442449 | None:intergenic | 45.0% | |
ATCATCATGGAAGCCTTGCA+AGG | + | chr4.2:80443572-80443591 | MS.gene78829:intron | 45.0% | |
ATGACATGGCAGCTTTGCAT+TGG | - | chr4.2:80443880-80443899 | None:intergenic | 45.0% | |
ATGCTTAATCAGGCTGGACA+CGG | - | chr4.2:80443288-80443307 | None:intergenic | 45.0% | |
ATTAGGTTACGTGTGACGCT+TGG | - | chr4.2:80443108-80443127 | None:intergenic | 45.0% | |
ATTTCATGCTTACAGCAGCC+TGG | - | chr4.2:80444609-80444628 | None:intergenic | 45.0% | |
ATTTGCAAAGCAAAGCGTGG+GGG | + | chr4.2:80441275-80441294 | MS.gene78829:CDS | 45.0% | |
CAAAAGGGGCTTCCTATTCT+TGG | + | chr4.2:80445185-80445204 | MS.gene78829:CDS | 45.0% | |
CAAAGCGACAATCCTTTCCA+CGG | - | chr4.2:80446261-80446280 | None:intergenic | 45.0% | |
CAGGCTTCATTATGTTCTGC+TGG | + | chr4.2:80440582-80440601 | MS.gene78829:intron | 45.0% | |
CAGGGAATAGTGCGTTATCA+AGG | + | chr4.2:80442943-80442962 | MS.gene78829:intron | 45.0% | |
CATAGGAAGAAGACAGTCAC+GGG | - | chr4.2:80444530-80444549 | None:intergenic | 45.0% | |
CCATAGGAAGAAGACAGTCA+CGG | - | chr4.2:80444531-80444550 | None:intergenic | 45.0% | |
CGACGCTAACACATGTAGTT+AGG | + | chr4.2:80440856-80440875 | MS.gene78829:intron | 45.0% | |
CGTGACTGTCTTCTTCCTAT+GGG | + | chr4.2:80444529-80444548 | MS.gene78829:CDS | 45.0% | |
CTAGTTGTCGTGTTCGTGTT+TGG | + | chr4.2:80441084-80441103 | MS.gene78829:intron | 45.0% | |
CTGCCATGTCATAAATGAGG+AGG | + | chr4.2:80443888-80443907 | MS.gene78829:intron | 45.0% | |
GAACCCACCATTGTAGAAAC+TGG | - | chr4.2:80444767-80444786 | None:intergenic | 45.0% | |
GAAGTAGGCGACATAGTTGT+AGG | + | chr4.2:80442032-80442051 | MS.gene78829:CDS | 45.0% | |
GAAGTGTGGCTGTACAAAAG+GGG | + | chr4.2:80445171-80445190 | MS.gene78829:CDS | 45.0% | |
GAGAATGTTGCACAGCGTTA+CGG | + | chr4.2:80444562-80444581 | MS.gene78829:CDS | 45.0% | |
GAGGCTAATTCCTGCACAAA+AGG | + | chr4.2:80444074-80444093 | MS.gene78829:intron | 45.0% | |
GCATCTAGATGTAGGGACTA+GGG | + | chr4.2:80445469-80445488 | MS.gene78829:intron | 45.0% | |
GCTATTTGCAAAGCAAAGCG+TGG | + | chr4.2:80441272-80441291 | MS.gene78829:CDS | 45.0% | |
GCTGAAGCCTGCATTCAAAA+AGG | + | chr4.2:80444945-80444964 | MS.gene78829:CDS | 45.0% | |
GCTTCTCATGAAGAGAAGTG+TGG | + | chr4.2:80445157-80445176 | MS.gene78829:CDS | 45.0% | |
GGTTCGCAAAACTAACCCAA+AGG | + | chr4.2:80442622-80442641 | MS.gene78829:CDS | 45.0% | |
TAACTCGCAGTTGCGAGTAA+GGG | + | chr4.2:80443922-80443941 | MS.gene78829:intron | 45.0% | |
TCTACTTGCCTCAGTTCTCA+AGG | + | chr4.2:80441322-80441341 | MS.gene78829:CDS | 45.0% | |
TCTTACGTAGTAGTTGGCAG+TGG | - | chr4.2:80441616-80441635 | None:intergenic | 45.0% | |
TGTGGATCCTAAAACTGGAG+AGG | + | chr4.2:80444855-80444874 | MS.gene78829:CDS | 45.0% | |
TTACGTGTGACGCTTGGTTA+AGG | - | chr4.2:80443102-80443121 | None:intergenic | 45.0% | |
TTACTCGCAACTGCGAGTTA+GGG | - | chr4.2:80443922-80443941 | None:intergenic | 45.0% | |
TTTCGGATGCTTAATCAGGC+TGG | - | chr4.2:80443294-80443313 | None:intergenic | 45.0% | |
TTTGATGAAGGAATTGGGGC+TGG | + | chr4.2:80442566-80442585 | MS.gene78829:intron | 45.0% | |
! | GAGAAGTGTGGCTGTACAAA+AGG | + | chr4.2:80445169-80445188 | MS.gene78829:CDS | 45.0% |
! | TGATAACGCACTATTCCCTG+TGG | - | chr4.2:80442943-80442962 | None:intergenic | 45.0% |
! | TGGTGGATCCGAAAATGATG+TGG | + | chr4.2:80440611-80440630 | MS.gene78829:CDS | 45.0% |
! | TGTAGGAGTTTTGCTGCTGT+TGG | + | chr4.2:80445781-80445800 | MS.gene78829:intron | 45.0% |
! | TTTGAAGCAGACCATGCCTA+AGG | + | chr4.2:80446337-80446356 | MS.gene78829:intron | 45.0% |
!! | GTTTGGTGTTCAACACATGC+CGG | + | chr4.2:80440991-80441010 | MS.gene78829:intron | 45.0% |
!!! | GCATTTTATGCTGGTTTCCC+AGG | + | chr4.2:80442104-80442123 | MS.gene78829:CDS | 45.0% |
!!! | GTGAGAGTGGTTTTGGAAGT+TGG | - | chr4.2:80443656-80443675 | None:intergenic | 45.0% |
!! | TAATATTATTAATTATATAC+AGG | + | chr4.2:80445567-80445586 | MS.gene78829:intron | 5.0% |
!! | TAATTCAAATAAAATATATA+TGG | - | chr4.2:80441061-80441080 | None:intergenic | 5.0% |
AAGGATGGAACCACAACTGC+AGG | + | chr4.2:80444964-80444983 | MS.gene78829:CDS | 50.0% | |
ATGTTACCTGTGGCGCCTAA+AGG | - | chr4.2:80446094-80446113 | None:intergenic | 50.0% | |
CAGCGTCGTGTTAGTGAAAC+CGG | - | chr4.2:80441013-80441032 | None:intergenic | 50.0% | |
CCGTGACTGTCTTCTTCCTA+TGG | + | chr4.2:80444528-80444547 | MS.gene78829:CDS | 50.0% | |
CCTACGTCTCGACAACAAAG+TGG | - | chr4.2:80441468-80441487 | None:intergenic | 50.0% | |
CTAACTCGCAGTTGCGAGTA+AGG | + | chr4.2:80443921-80443940 | MS.gene78829:intron | 50.0% | |
CTGCTGCACCATCACTAACT+TGG | - | chr4.2:80445133-80445152 | None:intergenic | 50.0% | |
CTTACTCGCAACTGCGAGTT+AGG | - | chr4.2:80443923-80443942 | None:intergenic | 50.0% | |
GAGCTGCGGCAGTATTTGAA+AGG | + | chr4.2:80446432-80446451 | MS.gene78829:CDS | 50.0% | |
GCAGCTGGAATAGCAAAAGC+TGG | - | chr4.2:80445835-80445854 | None:intergenic | 50.0% | |
GCTGCGGCAGTATTTGAAAG+GGG | + | chr4.2:80446434-80446453 | MS.gene78829:CDS | 50.0% | |
GGCATCTAGATGTAGGGACT+AGG | + | chr4.2:80445468-80445487 | MS.gene78829:intron | 50.0% | |
GGTGTAGATCCTGCTGTCAT+GGG | + | chr4.2:80445802-80445821 | MS.gene78829:CDS | 50.0% | |
TGAAGGAATTGGGGCTGGAT+TGG | + | chr4.2:80442571-80442590 | MS.gene78829:intron | 50.0% | |
TGGTGTAGATCCTGCTGTCA+TGG | + | chr4.2:80445801-80445820 | MS.gene78829:CDS | 50.0% | |
TGTTCTGCTGGACAAACTGG+TGG | + | chr4.2:80440594-80440613 | MS.gene78829:CDS | 50.0% | |
! | AGTTAGTGATGGTGCAGCAG+CGG | + | chr4.2:80445133-80445152 | MS.gene78829:CDS | 50.0% |
! | CAATGTCAATGGTGGTGCCA+TGG | + | chr4.2:80446057-80446076 | MS.gene78829:CDS | 50.0% |
! | CCACTTTGTTGTCGAGACGT+AGG | + | chr4.2:80441465-80441484 | MS.gene78829:intron | 50.0% |
! | CGTGGAAAGGATTGTCGCTT+TGG | + | chr4.2:80446259-80446278 | MS.gene78829:CDS | 50.0% |
!! | TTGAATGAGATGAAGCGCCG+TGG | + | chr4.2:80446241-80446260 | MS.gene78829:CDS | 50.0% |
!!! | AATGGTGGTGCCATGGCTTT+TGG | + | chr4.2:80446064-80446083 | MS.gene78829:CDS | 50.0% |
!!! | GTAGGCACAGTTTTAGGACC+AGG | + | chr4.2:80442050-80442069 | MS.gene78829:CDS | 50.0% |
ACAGTCACGGGCTTGTGCAA+AGG | - | chr4.2:80444518-80444537 | None:intergenic | 55.0% | |
ACCAGATGCTGTTGCAGCTG+CGG | - | chr4.2:80444723-80444742 | None:intergenic | 55.0% | |
AGCAAAGCGTGGGGGATTCA+AGG | + | chr4.2:80441283-80441302 | MS.gene78829:CDS | 55.0% | |
AGTGCGAGCTGCTTCTCTCT+TGG | + | chr4.2:80443995-80444014 | MS.gene78829:intron | 55.0% | |
CACAGCGTTACGGTGTGACA+AGG | + | chr4.2:80444572-80444591 | MS.gene78829:CDS | 55.0% | |
CCAGCAGATTTCACTGCAGC+TGG | - | chr4.2:80445850-80445869 | None:intergenic | 55.0% | |
CCAGCTGCAGTGAAATCTGC+TGG | + | chr4.2:80445847-80445866 | MS.gene78829:CDS | 55.0% | |
GACAAGGCAGGAACAAGACC+AGG | + | chr4.2:80444588-80444607 | MS.gene78829:CDS | 55.0% | |
GATCCTGCTGTCATGGGTGT+TGG | + | chr4.2:80445808-80445827 | MS.gene78829:CDS | 55.0% | |
GCAGATGCGAGTTGCTTCTC+TGG | + | chr4.2:80443853-80443872 | MS.gene78829:intron | 55.0% | |
TAGCTCGCATCTGCGAGTTC+AGG | - | chr4.2:80443825-80443844 | None:intergenic | 55.0% | |
! | AGGTTCTGGTATGGGAGCTG+CGG | + | chr4.2:80446418-80446437 | MS.gene78829:intron | 55.0% |
!! | TGAGATGAAGCGCCGTGGAA+AGG | + | chr4.2:80446246-80446265 | MS.gene78829:CDS | 55.0% |
CGCATCTGCGAGTTCAGGCA+GGG | - | chr4.2:80443820-80443839 | None:intergenic | 60.0% | |
CTCGCAACTGCGAGTTAGGG+CGG | - | chr4.2:80443919-80443938 | None:intergenic | 60.0% | |
GCGTTACGGTGTGACAAGGC+AGG | + | chr4.2:80444576-80444595 | MS.gene78829:CDS | 60.0% | |
GGACATCCTTTAGGCGCCAC+AGG | + | chr4.2:80446085-80446104 | MS.gene78829:CDS | 60.0% | |
GGACCAACACCCATGACAGC+AGG | - | chr4.2:80445814-80445833 | None:intergenic | 60.0% | |
TCGCATCTGCGAGTTCAGGC+AGG | - | chr4.2:80443821-80443840 | None:intergenic | 60.0% | |
TGCTCGCATCTGCTACTCGC+AGG | + | chr4.2:80443962-80443981 | MS.gene78829:intron | 60.0% | |
GCCGCAGCTGCAACAGCATC+TGG | + | chr4.2:80444719-80444738 | MS.gene78829:CDS | 65.0% | |
TGCGAGTTCAGGCAGGGCAG+AGG | - | chr4.2:80443814-80443833 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 80440404 | 80446466 | 80440404 | ID=MS.gene78829 |
chr4.2 | mRNA | 80440404 | 80446466 | 80440404 | ID=MS.gene78829.t1;Parent=MS.gene78829 |
chr4.2 | exon | 80440404 | 80440493 | 80440404 | ID=MS.gene78829.t1.exon1;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80440404 | 80440493 | 80440404 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80440585 | 80440643 | 80440585 | ID=MS.gene78829.t1.exon2;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80440585 | 80440643 | 80440585 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80441259 | 80441343 | 80441259 | ID=MS.gene78829.t1.exon3;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80441259 | 80441343 | 80441259 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80441999 | 80442125 | 80441999 | ID=MS.gene78829.t1.exon4;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80441999 | 80442125 | 80441999 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80442388 | 80442486 | 80442388 | ID=MS.gene78829.t1.exon5;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80442388 | 80442486 | 80442388 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80442576 | 80442643 | 80442576 | ID=MS.gene78829.t1.exon6;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80442576 | 80442643 | 80442576 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80444508 | 80444615 | 80444508 | ID=MS.gene78829.t1.exon7;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80444508 | 80444615 | 80444508 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80444701 | 80444778 | 80444701 | ID=MS.gene78829.t1.exon8;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80444701 | 80444778 | 80444701 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80444853 | 80444985 | 80444853 | ID=MS.gene78829.t1.exon9;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80444853 | 80444985 | 80444853 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80445120 | 80445216 | 80445120 | ID=MS.gene78829.t1.exon10;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80445120 | 80445216 | 80445120 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80445786 | 80445909 | 80445786 | ID=MS.gene78829.t1.exon11;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80445786 | 80445909 | 80445786 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80445998 | 80446106 | 80445998 | ID=MS.gene78829.t1.exon12;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80445998 | 80446106 | 80445998 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80446218 | 80446301 | 80446218 | ID=MS.gene78829.t1.exon13;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80446218 | 80446301 | 80446218 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
chr4.2 | exon | 80446420 | 80446466 | 80446420 | ID=MS.gene78829.t1.exon14;Parent=MS.gene78829.t1 |
chr4.2 | CDS | 80446420 | 80446466 | 80446420 | ID=cds.MS.gene78829.t1;Parent=MS.gene78829.t1 |
Gene Sequence |
Protein sequence |