Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79744.t1 | XP_013444681.1 | 96.3 | 968 | 32 | 1 | 1 | 968 | 1 | 964 | 0.00E+00 | 1881.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79744.t1 | Q9SYX2 | 48.9 | 878 | 385 | 16 | 111 | 968 | 196 | 1029 | 3.8e-211 | 736.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79744.t1 | A0A072TNB4 | 96.3 | 968 | 32 | 1 | 1 | 968 | 1 | 964 | 0.0e+00 | 1881.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049257 | MS.gene79744 | 0.837242 | 5.84E-57 | -1.69E-46 |
| MS.gene050060 | MS.gene79744 | 0.800722 | 1.26E-48 | -1.69E-46 |
| MS.gene050133 | MS.gene79744 | -0.819209 | 1.31E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene79744 | -0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene05081 | MS.gene79744 | 0.838122 | 3.47E-57 | -1.69E-46 |
| MS.gene051244 | MS.gene79744 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene79744 | 0.825426 | 4.72E-54 | -1.69E-46 |
| MS.gene051552 | MS.gene79744 | -0.854588 | 1.11E-61 | -1.69E-46 |
| MS.gene051838 | MS.gene79744 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene79744 | 0.823694 | 1.21E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene79744 | 0.8575 | 1.57E-62 | -1.69E-46 |
| MS.gene052589 | MS.gene79744 | 0.804721 | 1.89E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene79744 | 0.856754 | 2.60E-62 | -1.69E-46 |
| MS.gene054107 | MS.gene79744 | 0.8055 | 1.30E-49 | -1.69E-46 |
| MS.gene054343 | MS.gene79744 | 0.839832 | 1.25E-57 | -1.69E-46 |
| MS.gene054344 | MS.gene79744 | 0.811433 | 7.02E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene79744 | -0.828333 | 9.53E-55 | -1.69E-46 |
| MS.gene055370 | MS.gene79744 | 0.820858 | 5.49E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene79744 | 0.803597 | 3.23E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene79744 | 0.841376 | 4.93E-58 | -1.69E-46 |
| MS.gene056351 | MS.gene79744 | 0.809316 | 2.01E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene79744 | 0.880657 | 4.58E-70 | -1.69E-46 |
| MS.gene056664 | MS.gene79744 | 0.812261 | 4.63E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene79744 | 0.821782 | 3.36E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene79744 | 0.825156 | 5.47E-54 | -1.69E-46 |
| MS.gene057332 | MS.gene79744 | 0.842754 | 2.13E-58 | -1.69E-46 |
| MS.gene057658 | MS.gene79744 | 0.807739 | 4.36E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene79744 | -0.844654 | 6.61E-59 | -1.69E-46 |
| MS.gene058444 | MS.gene79744 | 0.815699 | 8.09E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene79744 | 0.84805 | 7.85E-60 | -1.69E-46 |
| MS.gene058838 | MS.gene79744 | 0.814805 | 1.28E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene79744 | 0.816343 | 5.81E-52 | -1.69E-46 |
| MS.gene059512 | MS.gene79744 | 0.874458 | 6.65E-68 | -1.69E-46 |
| MS.gene061231 | MS.gene79744 | 0.856241 | 3.67E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79744.t1 | MTR_8g027985 | 96.281 | 968 | 32 | 1 | 1 | 968 | 1 | 964 | 0.0 | 1938 |
| MS.gene79744.t1 | MTR_5g009530 | 50.119 | 838 | 322 | 18 | 172 | 968 | 252 | 1034 | 0.0 | 743 |
| MS.gene79744.t1 | MTR_5g009530 | 48.840 | 776 | 302 | 17 | 172 | 906 | 252 | 973 | 0.0 | 659 |
| MS.gene79744.t1 | MTR_2g085210 | 40.072 | 831 | 404 | 16 | 200 | 968 | 77 | 875 | 5.32e-178 | 540 |
| MS.gene79744.t1 | MTR_5g009530 | 42.263 | 601 | 252 | 17 | 172 | 731 | 252 | 798 | 7.75e-126 | 401 |
| MS.gene79744.t1 | MTR_5g085250 | 44.318 | 352 | 183 | 3 | 617 | 967 | 199 | 538 | 1.15e-102 | 331 |
| MS.gene79744.t1 | MTR_5g085250 | 44.318 | 352 | 183 | 3 | 617 | 967 | 232 | 571 | 6.87e-102 | 330 |
| MS.gene79744.t1 | MTR_5g085250 | 44.318 | 352 | 183 | 3 | 617 | 967 | 336 | 675 | 1.15e-100 | 330 |
| MS.gene79744.t1 | MTR_2g085210 | 34.477 | 641 | 330 | 14 | 200 | 778 | 77 | 689 | 1.81e-95 | 317 |
| MS.gene79744.t1 | MTR_2g085210 | 34.477 | 641 | 330 | 14 | 200 | 778 | 77 | 689 | 2.81e-95 | 317 |
| MS.gene79744.t1 | MTR_2g016160 | 25.373 | 268 | 172 | 10 | 653 | 909 | 60 | 310 | 2.19e-15 | 79.0 |
| MS.gene79744.t1 | MTR_7g086360 | 23.106 | 264 | 185 | 8 | 650 | 908 | 51 | 301 | 3.03e-13 | 72.8 |
| MS.gene79744.t1 | MTR_4g071130 | 24.506 | 253 | 154 | 10 | 724 | 955 | 29 | 265 | 7.80e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79744.t1 | AT2G46340 | 50.959 | 834 | 347 | 14 | 157 | 968 | 236 | 1029 | 0.0 | 762 |
| MS.gene79744.t1 | AT2G46340 | 50.959 | 834 | 347 | 14 | 157 | 968 | 236 | 1029 | 0.0 | 762 |
| MS.gene79744.t1 | AT4G11110 | 47.748 | 777 | 367 | 12 | 195 | 968 | 296 | 1036 | 0.0 | 685 |
| MS.gene79744.t1 | AT3G15354 | 38.659 | 820 | 401 | 15 | 200 | 968 | 76 | 844 | 0.0 | 561 |
| MS.gene79744.t1 | AT3G15354 | 38.049 | 820 | 398 | 16 | 200 | 968 | 76 | 836 | 6.70e-179 | 541 |
| MS.gene79744.t1 | AT1G53090 | 41.755 | 661 | 337 | 11 | 342 | 968 | 148 | 794 | 2.88e-168 | 512 |
| MS.gene79744.t1 | AT1G53090 | 37.634 | 93 | 54 | 2 | 170 | 262 | 38 | 126 | 1.96e-11 | 68.6 |
| MS.gene79744.t1 | AT1G53090 | 41.755 | 661 | 337 | 11 | 342 | 968 | 148 | 794 | 2.88e-168 | 512 |
| MS.gene79744.t1 | AT1G53090 | 37.634 | 93 | 54 | 2 | 170 | 262 | 38 | 126 | 1.96e-11 | 68.6 |
| MS.gene79744.t1 | AT1G53090 | 41.755 | 661 | 337 | 11 | 342 | 968 | 148 | 794 | 2.88e-168 | 512 |
| MS.gene79744.t1 | AT1G53090 | 37.634 | 93 | 54 | 2 | 170 | 262 | 38 | 126 | 1.96e-11 | 68.6 |
| MS.gene79744.t1 | AT3G15354 | 43.095 | 601 | 288 | 10 | 415 | 968 | 1 | 594 | 2.08e-160 | 484 |
| MS.gene79744.t1 | AT3G15354 | 43.095 | 601 | 288 | 10 | 415 | 968 | 1 | 594 | 2.08e-160 | 484 |
| MS.gene79744.t1 | AT1G53090 | 42.930 | 587 | 288 | 10 | 415 | 968 | 1 | 573 | 1.30e-156 | 474 |
| MS.gene79744.t1 | AT3G15354 | 33.016 | 630 | 324 | 13 | 200 | 778 | 76 | 658 | 1.81e-105 | 343 |
| MS.gene79744.t1 | AT2G32950 | 40.000 | 435 | 229 | 5 | 536 | 967 | 155 | 560 | 4.62e-103 | 333 |
| MS.gene79744.t1 | AT2G32950 | 39.908 | 436 | 230 | 5 | 536 | 968 | 268 | 674 | 1.00e-101 | 333 |
| MS.gene79744.t1 | AT1G53090 | 35.729 | 473 | 260 | 9 | 342 | 780 | 148 | 610 | 5.60e-88 | 294 |
| MS.gene79744.t1 | AT1G53090 | 33.929 | 112 | 70 | 2 | 151 | 262 | 19 | 126 | 1.59e-11 | 68.6 |
| MS.gene79744.t1 | AT5G23730 | 35.417 | 336 | 176 | 14 | 655 | 964 | 41 | 361 | 4.33e-45 | 167 |
| MS.gene79744.t1 | AT5G52250 | 32.515 | 326 | 194 | 9 | 652 | 965 | 69 | 380 | 7.42e-44 | 164 |
| MS.gene79744.t1 | AT1G29260 | 27.341 | 267 | 167 | 11 | 661 | 918 | 69 | 317 | 2.14e-14 | 75.9 |
| MS.gene79744.t1 | AT2G43770 | 25.658 | 304 | 196 | 13 | 650 | 937 | 48 | 337 | 3.35e-13 | 72.4 |
Find 150 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGTGACTTAACCTTTA+AGG | 0.103884 | 8.4:-68087302 | MS.gene79744:CDS |
| TCCATTACTATGACCCTTAA+AGG | 0.147618 | 8.4:+68087288 | None:intergenic |
| GCTTCTTTGCACTCAAATTT+TGG | 0.148667 | 8.4:+68089779 | None:intergenic |
| GTATATATTTAAACAGATTT+TGG | 0.151402 | 8.4:-68090025 | MS.gene79744:CDS |
| GAGTCAGTCGATCCCATTTC+TGG | 0.205018 | 8.4:-68086686 | MS.gene79744:CDS |
| TTTCGTTGGTTTATCTGTTT+TGG | 0.225023 | 8.4:-68087178 | MS.gene79744:CDS |
| GTTTCCTCATTGATCACTTC+TGG | 0.244539 | 8.4:+68089553 | None:intergenic |
| TTGTTTGAACGAAGATATTA+AGG | 0.291136 | 8.4:-68088699 | MS.gene79744:CDS |
| CTAGATTATGCACACCTATT+AGG | 0.295650 | 8.4:-68090611 | MS.gene79744:CDS |
| TGAATTTATACGCGAATTAG+AGG | 0.317112 | 8.4:-68088855 | MS.gene79744:CDS |
| ATAGAACCTTGAATTCTCTT+TGG | 0.319753 | 8.4:+68088392 | None:intergenic |
| GCTTGTGACTTAACCTTTAA+GGG | 0.321542 | 8.4:-68087301 | MS.gene79744:CDS |
| CAGCTTCCTTGAGCGGGCCT+TGG | 0.322871 | 8.4:+68088492 | None:intergenic |
| TCTAGTTATCCTCAATTGTT+AGG | 0.324872 | 8.4:-68090189 | MS.gene79744:CDS |
| TACATTTGCAGGGCTCATTA+TGG | 0.325837 | 8.4:+68087564 | None:intergenic |
| ACTATTTGAATGACCAGAAA+TGG | 0.327746 | 8.4:+68086673 | None:intergenic |
| AAGAGAATTCAAGGTTCTAT+TGG | 0.336597 | 8.4:-68088389 | MS.gene79744:CDS |
| CATAATGCTTTACCTGGTAT+TGG | 0.338301 | 8.4:+68089026 | None:intergenic |
| CATCACTTCAACTGTATTCA+TGG | 0.343911 | 8.4:-68089718 | MS.gene79744:CDS |
| TGAACACAGCATACATTTGC+AGG | 0.344827 | 8.4:+68087553 | None:intergenic |
| GAATTAGAGGCATCAAATTC+TGG | 0.345543 | 8.4:-68088842 | MS.gene79744:CDS |
| TGATTATGATGGTGTGGTTC+AGG | 0.361466 | 8.4:-68088063 | MS.gene79744:intron |
| AAGAACTTGACTGTAGCTTT+AGG | 0.367404 | 8.4:-68090447 | MS.gene79744:CDS |
| TTGGGACGAGAAGACGGTTC+AGG | 0.370665 | 8.4:+68089045 | None:intergenic |
| TTTGCTTCCTTAGCTGGATC+TGG | 0.370766 | 8.4:-68090543 | MS.gene79744:CDS |
| CGTATTTAAGTCATGTCTTA+AGG | 0.371979 | 8.4:-68089860 | MS.gene79744:CDS |
| TTGTTGAAAAGTTACATGTT+AGG | 0.373891 | 8.4:-68090476 | MS.gene79744:CDS |
| ATAATGCTTTACCTGGTATT+GGG | 0.391610 | 8.4:+68089027 | None:intergenic |
| TCATCAAATGTTTATAGCCT+TGG | 0.392309 | 8.4:-68089520 | MS.gene79744:CDS |
| CTAATAGGTGTGCATAATCT+AGG | 0.402336 | 8.4:+68090612 | None:intergenic |
| AATTTGTTTCTAGTGTCTGC+TGG | 0.402719 | 8.4:-68086634 | MS.gene79744:CDS |
| CAAGGTTCTATTGGTTGTCT+AGG | 0.404862 | 8.4:-68088380 | MS.gene79744:CDS |
| CAGATTAAGCAAAGGACAAA+AGG | 0.405341 | 8.4:-68090325 | MS.gene79744:CDS |
| ATGATTGTTCTGTCAAACTA+TGG | 0.406776 | 8.4:-68087802 | MS.gene79744:CDS |
| ATTTAGAGAATGTTGGTAAT+GGG | 0.407051 | 8.4:-68088415 | MS.gene79744:CDS |
| CTGATAACTCTTTGAAGCTA+TGG | 0.412942 | 8.4:-68087363 | MS.gene79744:CDS |
| AAAAGGGAATTGATTCTAGA+AGG | 0.422294 | 8.4:-68090308 | MS.gene79744:CDS |
| AATCACTTGAAATAGCATTA+AGG | 0.427015 | 8.4:+68088183 | None:intergenic |
| AATCTAGGTGACCTTGGAAA+AGG | 0.435987 | 8.4:+68090627 | None:intergenic |
| ACCTTTAAGGGTCATAGTAA+TGG | 0.442210 | 8.4:-68087289 | MS.gene79744:CDS |
| TTGCATATACCTTCATAGAA+AGG | 0.447291 | 8.4:+68088356 | None:intergenic |
| GCTTCATCAACACATGAACT+TGG | 0.458292 | 8.4:+68088569 | None:intergenic |
| TGAAGAGACAGCATCTCTTA+AGG | 0.463340 | 8.4:-68089746 | MS.gene79744:CDS |
| GAGGAACTGAAGAGCATAAG+AGG | 0.464134 | 8.4:-68090662 | MS.gene79744:CDS |
| TTCATCGCGGTCAAAACTTA+AGG | 0.464544 | 8.4:+68088253 | None:intergenic |
| AAAGAAAGGCTGTGCGTTGA+TGG | 0.465033 | 8.4:-68089658 | MS.gene79744:CDS |
| TTGAATAAAATTAAATACAT+TGG | 0.469482 | 8.4:-68089928 | MS.gene79744:CDS |
| CAAATCTCTGCCAGTGCCAA+TGG | 0.470603 | 8.4:-68086723 | MS.gene79744:CDS |
| CATTTAGAGAATGTTGGTAA+TGG | 0.473306 | 8.4:-68088416 | MS.gene79744:CDS |
| TAAGACATGACTGCAAATAG+TGG | 0.475104 | 8.4:-68090687 | None:intergenic |
| TGTCTAGGACCTTTCTATGA+AGG | 0.475887 | 8.4:-68088365 | MS.gene79744:CDS |
| ATTAGGAAGGAAAATGTGAT+TGG | 0.478880 | 8.4:-68090594 | MS.gene79744:CDS |
| GCTGTGCAATATTGAGTCAT+TGG | 0.479826 | 8.4:-68089172 | MS.gene79744:CDS |
| AAGGCCATCATGGCCTGTAA+TGG | 0.480729 | 8.4:-68089841 | MS.gene79744:CDS |
| TTTCTTCTCCAGAATTTCGT+TGG | 0.480988 | 8.4:-68087192 | MS.gene79744:intron |
| CGGCTGCAGCTTCCTTGAGC+GGG | 0.481237 | 8.4:+68088486 | None:intergenic |
| CTATTTGAATGACCAGAAAT+GGG | 0.481751 | 8.4:+68086674 | None:intergenic |
| TTACTGGAAGAATCATGATA+AGG | 0.482054 | 8.4:+68088611 | None:intergenic |
| TTGTGAGAAGCCATTGGCAC+TGG | 0.482764 | 8.4:+68086713 | None:intergenic |
| TTGTTTGACATCTCAACGAC+AGG | 0.486265 | 8.4:+68088143 | None:intergenic |
| GAGAAAACAGTGAAGGGAAA+GGG | 0.487106 | 8.4:-68090165 | MS.gene79744:CDS |
| GCGGCTGCAGCTTCCTTGAG+CGG | 0.488025 | 8.4:+68088485 | None:intergenic |
| TAAATGAGGCAATCTCCATC+TGG | 0.493793 | 8.4:+68088433 | None:intergenic |
| AACAATCTGTTTAGGATCTG+TGG | 0.494462 | 8.4:+68090494 | None:intergenic |
| CGTCTTCTCGTCCCAATACC+AGG | 0.496888 | 8.4:-68089038 | MS.gene79744:intron |
| ATGGAACAAGGAAAATGCCT+TGG | 0.499042 | 8.4:-68089822 | MS.gene79744:CDS |
| TGATACTGTCTTAAATTATG+TGG | 0.500293 | 8.4:+68090417 | None:intergenic |
| AGAGAAAACAGTGAAGGGAA+AGG | 0.500835 | 8.4:-68090166 | MS.gene79744:CDS |
| CTTGTTGCAGCCAACTCAGT+TGG | 0.503279 | 8.4:-68086593 | MS.gene79744:CDS |
| TGTTCCATTACAGGCCATGA+TGG | 0.504473 | 8.4:+68089837 | None:intergenic |
| AATGGGCCAAAGAGAATTCA+AGG | 0.506547 | 8.4:-68088398 | MS.gene79744:CDS |
| AATCAAGGGTTGATAAAGAA+AGG | 0.507494 | 8.4:-68089672 | MS.gene79744:CDS |
| CAAAGCTCAGTTGTGTGTGC+TGG | 0.508113 | 8.4:-68088118 | MS.gene79744:CDS |
| ATCTAGGTGACCTTGGAAAA+GGG | 0.515860 | 8.4:+68090628 | None:intergenic |
| TCACAAAATGCAAAGGAAGC+TGG | 0.517461 | 8.4:-68089090 | MS.gene79744:CDS |
| TGATAACTCTTTGAAGCTAT+GGG | 0.517563 | 8.4:-68087362 | MS.gene79744:CDS |
| CAGATGTGGGATGCAGGCAC+TGG | 0.519169 | 8.4:-68087917 | MS.gene79744:CDS |
| GTAGAAAGAAATCATTCGTA+TGG | 0.520653 | 8.4:-68088674 | MS.gene79744:CDS |
| TTCGTAACACTAAAATCCCT+TGG | 0.524049 | 8.4:-68087462 | MS.gene79744:CDS |
| TTGCCTCATTTAGAGAATGT+TGG | 0.524574 | 8.4:-68088422 | MS.gene79744:CDS |
| TGGACTCAGATGTGGGATGC+AGG | 0.524887 | 8.4:-68087923 | MS.gene79744:intron |
| TTTGGTCATCAAACACATGT+TGG | 0.526232 | 8.4:+68089896 | None:intergenic |
| TTACCAACATTCTCTAAATG+AGG | 0.528415 | 8.4:+68088419 | None:intergenic |
| TCGAATTTGTGAGAAGCCAT+TGG | 0.529274 | 8.4:+68086707 | None:intergenic |
| CTTAAGACATGACTTAAATA+CGG | 0.529408 | 8.4:+68089861 | None:intergenic |
| TGGGACGAGAAGACGGTTCA+GGG | 0.532561 | 8.4:+68089046 | None:intergenic |
| CTCGTTAGATTCTGAACCAC+AGG | 0.533992 | 8.4:+68087143 | None:intergenic |
| GTCATGTCTTAAGGCCATCA+TGG | 0.534541 | 8.4:-68089851 | MS.gene79744:CDS |
| TGGAGCATCAAAAGAGAGCT+TGG | 0.534740 | 8.4:-68087874 | MS.gene79744:CDS |
| ATCCCTTGGTGTACATTACC+TGG | 0.537374 | 8.4:-68087448 | MS.gene79744:CDS |
| TTTCACAATTCCAACTGAGT+TGG | 0.539152 | 8.4:+68086583 | None:intergenic |
| CAATTCAGTTTGAAGAGAAG+TGG | 0.541430 | 8.4:-68089585 | MS.gene79744:CDS |
| TGGAACAAGGAAAATGCCTT+GGG | 0.542068 | 8.4:-68089821 | MS.gene79744:CDS |
| TACTTCTCCATGAGATTCCA+AGG | 0.543464 | 8.4:-68088509 | MS.gene79744:CDS |
| AGATTAAGCAAAGGACAAAA+GGG | 0.544395 | 8.4:-68090324 | MS.gene79744:CDS |
| TTAGGAGAGAAAACAGTGAA+GGG | 0.548315 | 8.4:-68090171 | MS.gene79744:CDS |
| GAGCGGGCCTTGGAATCTCA+TGG | 0.550025 | 8.4:+68088502 | None:intergenic |
| ACACTCTCAAGGGTTTGTCT+TGG | 0.554478 | 8.4:-68089986 | MS.gene79744:CDS |
| TCAGCCACTGTCTCAATACA+TGG | 0.556787 | 8.4:-68087894 | MS.gene79744:CDS |
| GATGAAGACTACATTGCAGC+AGG | 0.558236 | 8.4:-68088236 | MS.gene79744:CDS |
| GTTAGGAGAGAAAACAGTGA+AGG | 0.558574 | 8.4:-68090172 | MS.gene79744:CDS |
| GTGCATAATCTAGGTGACCT+TGG | 0.558844 | 8.4:+68090621 | None:intergenic |
| AAGCAGTGATAAAAGTGTGA+TGG | 0.568908 | 8.4:-68088459 | MS.gene79744:CDS |
| AGAACAATCATCACTTCCAC+TGG | 0.572949 | 8.4:+68087814 | None:intergenic |
| CTGGCATCTACTGATTATGA+TGG | 0.573907 | 8.4:-68088074 | MS.gene79744:CDS |
| TAAGGGTCATAGTAATGGAA+AGG | 0.576196 | 8.4:-68087284 | MS.gene79744:intron |
| GAGATTCCAAGGCCCGCTCA+AGG | 0.576812 | 8.4:-68088498 | MS.gene79744:CDS |
| AAAGTGTGATGGAAACCAGA+TGG | 0.581140 | 8.4:-68088448 | MS.gene79744:CDS |
| AGATAGTTCGATTGTGACGA+TGG | 0.583360 | 8.4:+68088635 | None:intergenic |
| TGGTGTACATTACCTGGTCA+TGG | 0.585385 | 8.4:-68087442 | MS.gene79744:CDS |
| GCACAGGTATCTTGTTCCCA+AGG | 0.586975 | 8.4:+68089805 | None:intergenic |
| CTGGTATTGGGACGAGAAGA+CGG | 0.587976 | 8.4:+68089039 | None:intergenic |
| TACTGTCTTAAATTATGTGG+AGG | 0.588479 | 8.4:+68090420 | None:intergenic |
| ATCTACTGATTATGATGGTG+TGG | 0.590834 | 8.4:-68088069 | MS.gene79744:CDS |
| AGGAGGTCCAGATCCAGCTA+AGG | 0.590988 | 8.4:+68090536 | None:intergenic |
| TCGGCTGATTACAAAGTGTA+CGG | 0.592155 | 8.4:-68087493 | MS.gene79744:CDS |
| ATGACTGCAAATAGTGGGAG+AGG | 0.592738 | 8.4:-68090681 | MS.gene79744:CDS |
| CATAATCAGTAGATGCCAGA+TGG | 0.607853 | 8.4:+68088078 | None:intergenic |
| AAGACATGACTGCAAATAGT+GGG | 0.609137 | 8.4:-68090686 | None:intergenic |
| CTAACAGCTTTACCATGACC+AGG | 0.613394 | 8.4:+68087430 | None:intergenic |
| TTGGATGGATACATTGCCTG+TGG | 0.613457 | 8.4:-68087159 | MS.gene79744:CDS |
| ACTGTCTTAAATTATGTGGA+GGG | 0.616289 | 8.4:+68090421 | None:intergenic |
| GGCGATAAGACGAAACAAGA+CGG | 0.617468 | 8.4:+68089952 | None:intergenic |
| ATAATTTAAGACAGTATCAG+AGG | 0.620762 | 8.4:-68090413 | MS.gene79744:CDS |
| ATTATGCACACCTATTAGGA+AGG | 0.620818 | 8.4:-68090607 | MS.gene79744:CDS |
| GTTTCTATCACAAAATGCAA+AGG | 0.621901 | 8.4:-68089097 | MS.gene79744:CDS |
| TTTGAACGAAGATATTAAGG+AGG | 0.625382 | 8.4:-68088696 | MS.gene79744:CDS |
| AATTGTGAAACTACTTCAGA+TGG | 0.626139 | 8.4:-68086570 | MS.gene79744:CDS |
| ATAAAGTGAAGAAATCAGAA+AGG | 0.626505 | 8.4:-68090050 | MS.gene79744:CDS |
| TCATGGCCTGTAATGGAACA+AGG | 0.631186 | 8.4:-68089834 | MS.gene79744:CDS |
| GAAGACTACATTGCAGCAGG+TGG | 0.632505 | 8.4:-68088233 | MS.gene79744:CDS |
| TTGTTTCTAGTGTCTGCTGG+AGG | 0.648602 | 8.4:-68086631 | MS.gene79744:CDS |
| TACAGCAAGTTCGAAGAGCG+CGG | 0.652487 | 8.4:-68088323 | MS.gene79744:CDS |
| ACTTAAGGCACATATCACAT+TGG | 0.655318 | 8.4:+68088268 | None:intergenic |
| ATGGACTCAACTTAAGAGCG+TGG | 0.658372 | 8.4:-68090089 | MS.gene79744:CDS |
| TCAAATAGTAGTGATAACAA+TGG | 0.662592 | 8.4:-68086659 | MS.gene79744:CDS |
| GAACACAGCATACATTTGCA+GGG | 0.663936 | 8.4:+68087554 | None:intergenic |
| TGTTTGACATCTCAACGACA+GGG | 0.664739 | 8.4:+68088144 | None:intergenic |
| TAGCTTCAAAGAGTTATCAG+TGG | 0.667175 | 8.4:+68087366 | None:intergenic |
| AAATCACTCAGATTAAGCAA+AGG | 0.669333 | 8.4:-68090333 | MS.gene79744:CDS |
| AATCTGTTTAGGATCTGTGG+TGG | 0.669552 | 8.4:+68090497 | None:intergenic |
| AGACAATGTGATGTCTAGCG+CGG | 0.671840 | 8.4:-68090124 | MS.gene79744:CDS |
| GACCAGGTAATGTACACCAA+GGG | 0.678899 | 8.4:+68087446 | None:intergenic |
| TGCTCCATGTATTGAGACAG+TGG | 0.687561 | 8.4:+68087890 | None:intergenic |
| TTGTCCAGAAGTGATCAATG+AGG | 0.688486 | 8.4:-68089557 | MS.gene79744:CDS |
| TGACCAGGTAATGTACACCA+AGG | 0.691760 | 8.4:+68087445 | None:intergenic |
| CTGTGGTTCAGAATCTAACG+AGG | 0.708727 | 8.4:-68087142 | MS.gene79744:intron |
| ACAAGCATCAGATAACAACT+CGG | 0.717159 | 8.4:+68087318 | None:intergenic |
| CTGCAATGTAGTCTTCATCG+CGG | 0.756043 | 8.4:+68088240 | None:intergenic |
| CAAACTATGGAATATCAGCG+AGG | 0.779696 | 8.4:-68087789 | MS.gene79744:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATAAAATTAAATACAT+TGG | - | chr8.4:68087318-68087337 | MS.gene79744:CDS | 10.0% |
| !!! | ATGTATTTAATTTTATTCAA+CGG | + | chr8.4:68087318-68087337 | None:intergenic | 10.0% |
| !!! | AAATCTTTTATTTTTTGGAT+CGG | - | chr8.4:68089734-68089753 | MS.gene79744:CDS | 15.0% |
| !!! | GTATATATTTAAACAGATTT+TGG | - | chr8.4:68087221-68087240 | MS.gene79744:intron | 15.0% |
| !!! | TATCTTTTTTTATGTATAAC+AGG | - | chr8.4:68088354-68088373 | MS.gene79744:CDS | 15.0% |
| !!! | TGAAACTTAACAAAATATTT+TGG | + | chr8.4:68087837-68087856 | None:intergenic | 15.0% |
| !! | AACAGGTTATGAATAATTAT+AGG | + | chr8.4:68088021-68088040 | None:intergenic | 20.0% |
| !! | AACATTAATATTATGTGACA+TGG | - | chr8.4:68089299-68089318 | MS.gene79744:intron | 20.0% |
| !! | ACAGGTTATGAATAATTATA+GGG | + | chr8.4:68088020-68088039 | None:intergenic | 20.0% |
| !! | AGAAGAAAAACAGTTTATTT+CGG | - | chr8.4:68087635-68087654 | MS.gene79744:intron | 20.0% |
| !! | ATTATAAGCTCTTGTATTAT+TGG | - | chr8.4:68090382-68090401 | MS.gene79744:CDS | 20.0% |
| !! | TCACTAATTAAAATAACCAT+AGG | - | chr8.4:68087854-68087873 | MS.gene79744:CDS | 20.0% |
| !! | TCCAAAAAATAAAAGATTTG+TGG | + | chr8.4:68089733-68089752 | None:intergenic | 20.0% |
| !! | TTATGAGAAACTAATTTCTT+CGG | + | chr8.4:68090246-68090265 | None:intergenic | 20.0% |
| !!! | AGATCTACTAATAATTTTAC+TGG | + | chr8.4:68088654-68088673 | None:intergenic | 20.0% |
| !!! | ATTTAAACAGATTTTGGAAT+TGG | - | chr8.4:68087227-68087246 | MS.gene79744:intron | 20.0% |
| !!! | TATAAAGCTTTTGCTAATAT+AGG | - | chr8.4:68086979-68086998 | MS.gene79744:intron | 20.0% |
| !!! | TCCACAAATCTTTTATTTTT+TGG | - | chr8.4:68089729-68089748 | MS.gene79744:CDS | 20.0% |
| !!! | TTAGTTTCTCATAATTTTTG+TGG | - | chr8.4:68090252-68090271 | MS.gene79744:CDS | 20.0% |
| !!! | TTTTTCTTTTTATCACTCTA+TGG | - | chr8.4:68090279-68090298 | MS.gene79744:CDS | 20.0% |
| ! | AAGAAATATAACTATGTGAC+AGG | - | chr8.4:68089565-68089584 | MS.gene79744:CDS | 25.0% |
| ! | AATATTGATATTGATGTTCG+AGG | - | chr8.4:68088301-68088320 | MS.gene79744:CDS | 25.0% |
| ! | AATCACTTGAAATAGCATTA+AGG | + | chr8.4:68089066-68089085 | None:intergenic | 25.0% |
| ! | ATAAAGTGAAGAAATCAGAA+AGG | - | chr8.4:68087196-68087215 | MS.gene79744:intron | 25.0% |
| ! | ATAGCATAATTAATCCAAGT+TGG | + | chr8.4:68087955-68087974 | None:intergenic | 25.0% |
| ! | CACAATTTAATCAAACCTTT+AGG | - | chr8.4:68087886-68087905 | MS.gene79744:CDS | 25.0% |
| ! | CACTAAAATGTTAACAAAAC+AGG | + | chr8.4:68088038-68088057 | None:intergenic | 25.0% |
| ! | CAGTTATATAAAAAACCATC+TGG | - | chr8.4:68089153-68089172 | MS.gene79744:CDS | 25.0% |
| ! | CTTAAGACATGACTTAAATA+CGG | + | chr8.4:68087388-68087407 | None:intergenic | 25.0% |
| ! | GTATCAATTTCATTTCCTAA+AGG | + | chr8.4:68087904-68087923 | None:intergenic | 25.0% |
| ! | TCAAATAGTAGTGATAACAA+TGG | - | chr8.4:68090587-68090606 | MS.gene79744:CDS | 25.0% |
| ! | TGAAGAAGAAAAGAAAAAAC+AGG | - | chr8.4:68088499-68088518 | MS.gene79744:CDS | 25.0% |
| ! | TGATACTGTCTTAAATTATG+TGG | + | chr8.4:68086832-68086851 | None:intergenic | 25.0% |
| ! | TTAATATTATGTGACATGGA+TGG | - | chr8.4:68089303-68089322 | MS.gene79744:intron | 25.0% |
| ! | TTACAAAGCATAACTTACAA+TGG | - | chr8.4:68089504-68089523 | MS.gene79744:CDS | 25.0% |
| ! | TTGTTGAAAAGTTACATGTT+AGG | - | chr8.4:68086770-68086789 | MS.gene79744:intron | 25.0% |
| ! | TTGTTTGAACGAAGATATTA+AGG | - | chr8.4:68088547-68088566 | MS.gene79744:CDS | 25.0% |
| !! | AACTTTTCAACAATCTGTTT+AGG | + | chr8.4:68086763-68086782 | None:intergenic | 25.0% |
| !! | ATAATTTAAGACAGTATCAG+AGG | - | chr8.4:68086833-68086852 | MS.gene79744:intron | 25.0% |
| !! | ATATAATACATTAGTCTGTC+TGG | - | chr8.4:68090156-68090175 | MS.gene79744:CDS | 25.0% |
| !! | TTTTGCTAATATAGGCAATA+TGG | - | chr8.4:68086987-68087006 | MS.gene79744:intron | 25.0% |
| !! | TTTTTGCAGAGAAATTCTAT+AGG | - | chr8.4:68089657-68089676 | MS.gene79744:CDS | 25.0% |
| !!! | AAAATATTTTGGCTATCAAG+AGG | + | chr8.4:68087826-68087845 | None:intergenic | 25.0% |
| !!! | ATTTAGAGAATGTTGGTAAT+GGG | - | chr8.4:68088831-68088850 | MS.gene79744:CDS | 25.0% |
| !!! | CTGTTTTGTTAACATTTTAG+TGG | - | chr8.4:68088036-68088055 | MS.gene79744:intron | 25.0% |
| !!! | TTACATGTTTTATTCCAACT+TGG | - | chr8.4:68087938-68087957 | MS.gene79744:intron | 25.0% |
| AAAAATGGACATGGAATCAA+GGG | - | chr8.4:68087560-68087579 | MS.gene79744:CDS | 30.0% | |
| AAATCACTCAGATTAAGCAA+AGG | - | chr8.4:68086913-68086932 | MS.gene79744:intron | 30.0% | |
| AAGAGAATTCAAGGTTCTAT+TGG | - | chr8.4:68088857-68088876 | MS.gene79744:CDS | 30.0% | |
| AATTGTGAAACTACTTCAGA+TGG | - | chr8.4:68090676-68090695 | MS.gene79744:CDS | 30.0% | |
| ACTATTTGAATGACCAGAAA+TGG | + | chr8.4:68090576-68090595 | None:intergenic | 30.0% | |
| ACTGTCTTAAATTATGTGGA+GGG | + | chr8.4:68086828-68086847 | None:intergenic | 30.0% | |
| AGATTAAGCAAAGGACAAAA+GGG | - | chr8.4:68086922-68086941 | MS.gene79744:intron | 30.0% | |
| ATAATGCTTTACCTGGTATT+GGG | + | chr8.4:68088222-68088241 | None:intergenic | 30.0% | |
| ATAGAACCTTGAATTCTCTT+TGG | + | chr8.4:68088857-68088876 | None:intergenic | 30.0% | |
| ATGATTGTTCTGTCAAACTA+TGG | - | chr8.4:68089444-68089463 | MS.gene79744:intron | 30.0% | |
| ATGCTATTATTCTGAATGTG+TGG | - | chr8.4:68088261-68088280 | MS.gene79744:CDS | 30.0% | |
| ATTAGGAAGGAAAATGTGAT+TGG | - | chr8.4:68086652-68086671 | MS.gene79744:CDS | 30.0% | |
| CGTATTTAAGTCATGTCTTA+AGG | - | chr8.4:68087386-68087405 | MS.gene79744:CDS | 30.0% | |
| CTATTTGAATGACCAGAAAT+GGG | + | chr8.4:68090575-68090594 | None:intergenic | 30.0% | |
| GAAAAAACAGGAAGCTAAAT+TGG | - | chr8.4:68088511-68088530 | MS.gene79744:CDS | 30.0% | |
| GTAGAAAGAAATCATTCGTA+TGG | - | chr8.4:68088572-68088591 | MS.gene79744:CDS | 30.0% | |
| GTTTCTATCACAAAATGCAA+AGG | - | chr8.4:68088149-68088168 | MS.gene79744:CDS | 30.0% | |
| TACTGTCTTAAATTATGTGG+AGG | + | chr8.4:68086829-68086848 | None:intergenic | 30.0% | |
| TCATCAAATGTTTATAGCCT+TGG | - | chr8.4:68087726-68087745 | MS.gene79744:intron | 30.0% | |
| TCTAGTTATCCTCAATTGTT+AGG | - | chr8.4:68087057-68087076 | MS.gene79744:intron | 30.0% | |
| TGAATTTATACGCGAATTAG+AGG | - | chr8.4:68088391-68088410 | MS.gene79744:CDS | 30.0% | |
| TTACCAACATTCTCTAAATG+AGG | + | chr8.4:68088830-68088849 | None:intergenic | 30.0% | |
| TTACTGGAAGAATCATGATA+AGG | + | chr8.4:68088638-68088657 | None:intergenic | 30.0% | |
| TTGCATATACCTTCATAGAA+AGG | + | chr8.4:68088893-68088912 | None:intergenic | 30.0% | |
| TTTGAACGAAGATATTAAGG+AGG | - | chr8.4:68088550-68088569 | MS.gene79744:CDS | 30.0% | |
| ! | AAAAGGGAATTGATTCTAGA+AGG | - | chr8.4:68086938-68086957 | MS.gene79744:intron | 30.0% |
| ! | ATACGGTGAAACATGATTTT+TGG | + | chr8.4:68087371-68087390 | None:intergenic | 30.0% |
| ! | ATCACATTTTCCTTCCTAAT+AGG | + | chr8.4:68086652-68086671 | None:intergenic | 30.0% |
| ! | CATTTAGAGAATGTTGGTAA+TGG | - | chr8.4:68088830-68088849 | MS.gene79744:CDS | 30.0% |
| ! | GCATTTTGTGATAGAAACTT+TGG | + | chr8.4:68088147-68088166 | None:intergenic | 30.0% |
| ! | TCTGAATGTGTGGTTTTTAA+TGG | - | chr8.4:68088271-68088290 | MS.gene79744:CDS | 30.0% |
| ! | TTTTGTGATAGAAACTTTGG+CGG | + | chr8.4:68088144-68088163 | None:intergenic | 30.0% |
| !! | AATCAAGGGTTGATAAAGAA+AGG | - | chr8.4:68087574-68087593 | MS.gene79744:CDS | 30.0% |
| !! | TGATAACTCTTTGAAGCTAT+GGG | - | chr8.4:68089884-68089903 | MS.gene79744:CDS | 30.0% |
| !!! | CTCTATTTTTTCTACCTTTC+AGG | - | chr8.4:68090487-68090506 | MS.gene79744:CDS | 30.0% |
| !!! | TTTCGTTGGTTTATCTGTTT+TGG | - | chr8.4:68090068-68090087 | MS.gene79744:CDS | 30.0% |
| AAGAACTTGACTGTAGCTTT+AGG | - | chr8.4:68086799-68086818 | MS.gene79744:intron | 35.0% | |
| AATTGTGCATAACAGTCCTA+TGG | + | chr8.4:68087873-68087892 | None:intergenic | 35.0% | |
| ACAAGCATCAGATAACAACT+CGG | + | chr8.4:68089931-68089950 | None:intergenic | 35.0% | |
| ACTTAAGGCACATATCACAT+TGG | + | chr8.4:68088981-68089000 | None:intergenic | 35.0% | |
| ATTATGCACACCTATTAGGA+AGG | - | chr8.4:68086639-68086658 | MS.gene79744:CDS | 35.0% | |
| CAAAAATGGACATGGAATCA+AGG | - | chr8.4:68087559-68087578 | MS.gene79744:CDS | 35.0% | |
| CAATTCAGTTTGAAGAGAAG+TGG | - | chr8.4:68087661-68087680 | MS.gene79744:intron | 35.0% | |
| CAGATAAACCAACGAAATTC+TGG | + | chr8.4:68090065-68090084 | None:intergenic | 35.0% | |
| CAGATTAAGCAAAGGACAAA+AGG | - | chr8.4:68086921-68086940 | MS.gene79744:intron | 35.0% | |
| CATAATGCTTTACCTGGTAT+TGG | + | chr8.4:68088223-68088242 | None:intergenic | 35.0% | |
| CATCACTTCAACTGTATTCA+TGG | - | chr8.4:68087528-68087547 | MS.gene79744:CDS | 35.0% | |
| CTAATAGGTGTGCATAATCT+AGG | + | chr8.4:68086637-68086656 | None:intergenic | 35.0% | |
| CTAGATTATGCACACCTATT+AGG | - | chr8.4:68086635-68086654 | MS.gene79744:CDS | 35.0% | |
| CTATCAAGAGGAAATTATGC+AGG | + | chr8.4:68087814-68087833 | None:intergenic | 35.0% | |
| GAGGAAATTATGCAGGATAA+AGG | + | chr8.4:68087807-68087826 | None:intergenic | 35.0% | |
| GCTTGTGACTTAACCTTTAA+GGG | - | chr8.4:68089945-68089964 | MS.gene79744:CDS | 35.0% | |
| GTGATAACAGTAAACCTGAA+AGG | + | chr8.4:68090504-68090523 | None:intergenic | 35.0% | |
| TAGCTTCAAAGAGTTATCAG+TGG | + | chr8.4:68089883-68089902 | None:intergenic | 35.0% | |
| TCCATTACTATGACCCTTAA+AGG | + | chr8.4:68089961-68089980 | None:intergenic | 35.0% | |
| TGCTTGTGACTTAACCTTTA+AGG | - | chr8.4:68089944-68089963 | MS.gene79744:CDS | 35.0% | |
| TTAGGAGAGAAAACAGTGAA+GGG | - | chr8.4:68087075-68087094 | MS.gene79744:intron | 35.0% | |
| TTCGTAACACTAAAATCCCT+TGG | - | chr8.4:68089784-68089803 | MS.gene79744:CDS | 35.0% | |
| TTGAATTTGACATCAACCGT+GGG | - | chr8.4:68090428-68090447 | MS.gene79744:CDS | 35.0% | |
| TTGCCTCATTTAGAGAATGT+TGG | - | chr8.4:68088824-68088843 | MS.gene79744:CDS | 35.0% | |
| TTTCACAATTCCAACTGAGT+TGG | + | chr8.4:68090666-68090685 | None:intergenic | 35.0% | |
| TTTCTTCTCCAGAATTTCGT+TGG | - | chr8.4:68090054-68090073 | MS.gene79744:CDS | 35.0% | |
| TTTGGTCATCAAACACATGT+TGG | + | chr8.4:68087353-68087372 | None:intergenic | 35.0% | |
| ! | AAATCAATGACCCTTTTCCA+AGG | - | chr8.4:68086608-68086627 | MS.gene79744:CDS | 35.0% |
| ! | AACAATCTGTTTAGGATCTG+TGG | + | chr8.4:68086755-68086774 | None:intergenic | 35.0% |
| ! | AAGCAGTGATAAAAGTGTGA+TGG | - | chr8.4:68088787-68088806 | MS.gene79744:CDS | 35.0% |
| ! | ACCTTTAAGGGTCATAGTAA+TGG | - | chr8.4:68089957-68089976 | MS.gene79744:CDS | 35.0% |
| ! | AGAAATTTTGCTTCCTTAGC+TGG | - | chr8.4:68086697-68086716 | MS.gene79744:CDS | 35.0% |
| ! | ATCTACTGATTATGATGGTG+TGG | - | chr8.4:68089177-68089196 | MS.gene79744:CDS | 35.0% |
| ! | ATGTGTATCTTTTGATCCCA+CGG | + | chr8.4:68090447-68090466 | None:intergenic | 35.0% |
| ! | CACACTTTTATCACTGCTTT+TGG | + | chr8.4:68088786-68088805 | None:intergenic | 35.0% |
| ! | CATTTTCCTTGTTCCATTAC+AGG | + | chr8.4:68087421-68087440 | None:intergenic | 35.0% |
| ! | GCTTCTTTGCACTCAAATTT+TGG | + | chr8.4:68087470-68087489 | None:intergenic | 35.0% |
| ! | GTTTTCTCTCCTAACAATTG+AGG | + | chr8.4:68087069-68087088 | None:intergenic | 35.0% |
| ! | TAAGGGTCATAGTAATGGAA+AGG | - | chr8.4:68089962-68089981 | MS.gene79744:CDS | 35.0% |
| ! | TTATCACTCTATGGCGTTTT+AGG | - | chr8.4:68090288-68090307 | MS.gene79744:CDS | 35.0% |
| ! | TTCCACTGGCAAACATTTTT+GGG | + | chr8.4:68089421-68089440 | None:intergenic | 35.0% |
| ! | TTGATTTTGCACACTCTCAA+GGG | - | chr8.4:68087250-68087269 | MS.gene79744:intron | 35.0% |
| !! | AATTTGTTTCTAGTGTCTGC+TGG | - | chr8.4:68090612-68090631 | MS.gene79744:CDS | 35.0% |
| !! | ACTTTTATCACTGCTTTTGG+CGG | + | chr8.4:68088783-68088802 | None:intergenic | 35.0% |
| !! | CTGATAACTCTTTGAAGCTA+TGG | - | chr8.4:68089883-68089902 | MS.gene79744:CDS | 35.0% |
| !! | GAATTAGAGGCATCAAATTC+TGG | - | chr8.4:68088404-68088423 | MS.gene79744:CDS | 35.0% |
| !! | GTTGGTTTATCTGTTTTGGA+TGG | - | chr8.4:68090072-68090091 | MS.gene79744:CDS | 35.0% |
| AATCTAGGTGACCTTGGAAA+AGG | + | chr8.4:68086622-68086641 | None:intergenic | 40.0% | |
| AATGGGCCAAAGAGAATTCA+AGG | - | chr8.4:68088848-68088867 | MS.gene79744:CDS | 40.0% | |
| AGAACAATCATCACTTCCAC+TGG | + | chr8.4:68089435-68089454 | None:intergenic | 40.0% | |
| AGAGAAAACAGTGAAGGGAA+AGG | - | chr8.4:68087080-68087099 | MS.gene79744:intron | 40.0% | |
| AGATAGTTCGATTGTGACGA+TGG | + | chr8.4:68088614-68088633 | None:intergenic | 40.0% | |
| ATCTAGGTGACCTTGGAAAA+GGG | + | chr8.4:68086621-68086640 | None:intergenic | 40.0% | |
| ATGGAACAAGGAAAATGCCT+TGG | - | chr8.4:68087424-68087443 | MS.gene79744:CDS | 40.0% | |
| CAAACTATGGAATATCAGCG+AGG | - | chr8.4:68089457-68089476 | MS.gene79744:intron | 40.0% | |
| CATAATCAGTAGATGCCAGA+TGG | + | chr8.4:68089171-68089190 | None:intergenic | 40.0% | |
| CCTCAAAAAGAAGAACTCCA+AGG | + | chr8.4:68087746-68087765 | None:intergenic | 40.0% | |
| CTGTGACACAAAAATGGACA+TGG | - | chr8.4:68087551-68087570 | MS.gene79744:CDS | 40.0% | |
| GAACACAGCATACATTTGCA+GGG | + | chr8.4:68089695-68089714 | None:intergenic | 40.0% | |
| GACCAAAAACTAGTACTAGG+AGG | + | chr8.4:68086730-68086749 | None:intergenic | 40.0% | |
| GAGAAAACAGTGAAGGGAAA+GGG | - | chr8.4:68087081-68087100 | MS.gene79744:intron | 40.0% | |
| GCTGTGCAATATTGAGTCAT+TGG | - | chr8.4:68088074-68088093 | MS.gene79744:CDS | 40.0% | |
| GCTTCATCAACACATGAACT+TGG | + | chr8.4:68088680-68088699 | None:intergenic | 40.0% | |
| GTGGACCAAAAACTAGTACT+AGG | + | chr8.4:68086733-68086752 | None:intergenic | 40.0% | |
| GTTAGGAGAGAAAACAGTGA+AGG | - | chr8.4:68087074-68087093 | MS.gene79744:intron | 40.0% | |
| GTTGAATTTGACATCAACCG+TGG | - | chr8.4:68090427-68090446 | MS.gene79744:CDS | 40.0% | |
| GTTTCCTCATTGATCACTTC+TGG | + | chr8.4:68087696-68087715 | None:intergenic | 40.0% | |
| TAAATGAGGCAATCTCCATC+TGG | + | chr8.4:68088816-68088835 | None:intergenic | 40.0% | |
| TACATTTGCAGGGCTCATTA+TGG | + | chr8.4:68089685-68089704 | None:intergenic | 40.0% | |
| TACTTCTCCATGAGATTCCA+AGG | - | chr8.4:68088737-68088756 | MS.gene79744:CDS | 40.0% | |
| TCACAAAATGCAAAGGAAGC+TGG | - | chr8.4:68088156-68088175 | MS.gene79744:CDS | 40.0% | |
| TCATGGCTGTGACACAAAAA+TGG | - | chr8.4:68087545-68087564 | MS.gene79744:CDS | 40.0% | |
| TCGAATTTGTGAGAAGCCAT+TGG | + | chr8.4:68090542-68090561 | None:intergenic | 40.0% | |
| TCGGCTGATTACAAAGTGTA+CGG | - | chr8.4:68089753-68089772 | MS.gene79744:CDS | 40.0% | |
| TGAACACAGCATACATTTGC+AGG | + | chr8.4:68089696-68089715 | None:intergenic | 40.0% | |
| TGAAGAGACAGCATCTCTTA+AGG | - | chr8.4:68087500-68087519 | MS.gene79744:CDS | 40.0% | |
| TGGAACAAGGAAAATGCCTT+GGG | - | chr8.4:68087425-68087444 | MS.gene79744:CDS | 40.0% | |
| TGTTTGACATCTCAACGACA+GGG | + | chr8.4:68089105-68089124 | None:intergenic | 40.0% | |
| TTCATCGCGGTCAAAACTTA+AGG | + | chr8.4:68088996-68089015 | None:intergenic | 40.0% | |
| TTGTCCAGAAGTGATCAATG+AGG | - | chr8.4:68087689-68087708 | MS.gene79744:intron | 40.0% | |
| TTGTTTGACATCTCAACGAC+AGG | + | chr8.4:68089106-68089125 | None:intergenic | 40.0% | |
| ! | AAAGTGTGATGGAAACCAGA+TGG | - | chr8.4:68088798-68088817 | MS.gene79744:CDS | 40.0% |
| ! | AATCTGTTTAGGATCTGTGG+TGG | + | chr8.4:68086752-68086771 | None:intergenic | 40.0% |
| ! | CAAGGTTCTATTGGTTGTCT+AGG | - | chr8.4:68088866-68088885 | MS.gene79744:CDS | 40.0% |
| ! | CCTTGGAGTTCTTCTTTTTG+AGG | - | chr8.4:68087743-68087762 | MS.gene79744:intron | 40.0% |
| ! | CTGGCATCTACTGATTATGA+TGG | - | chr8.4:68089172-68089191 | MS.gene79744:CDS | 40.0% |
| ! | CTTCCACTGGCAAACATTTT+TGG | + | chr8.4:68089422-68089441 | None:intergenic | 40.0% |
| ! | GGTCATAGTAATGGAAAGGT+TGG | - | chr8.4:68089966-68089985 | MS.gene79744:CDS | 40.0% |
| ! | TGATTATGATGGTGTGGTTC+AGG | - | chr8.4:68089183-68089202 | MS.gene79744:intron | 40.0% |
| ! | TGTCTAGGACCTTTCTATGA+AGG | - | chr8.4:68088881-68088900 | MS.gene79744:intron | 40.0% |
| !! | ACTCAAATTTTGGCATGCAC+AGG | + | chr8.4:68087460-68087479 | None:intergenic | 40.0% |
| !! | GTTGATTTTGCACACTCTCA+AGG | - | chr8.4:68087249-68087268 | MS.gene79744:intron | 40.0% |
| !!! | ACTGGCAAACATTTTTGGGT+CGG | + | chr8.4:68089417-68089436 | None:intergenic | 40.0% |
| !!! | AGGAAGCTGGTTTTTGTCTA+TGG | - | chr8.4:68088169-68088188 | MS.gene79744:CDS | 40.0% |
| !!! | GACCTCCTAGTACTAGTTTT+TGG | - | chr8.4:68086725-68086744 | MS.gene79744:CDS | 40.0% |
| AAAGAAAGGCTGTGCGTTGA+TGG | - | chr8.4:68087588-68087607 | MS.gene79744:intron | 45.0% | |
| ACACTCTCAAGGGTTTGTCT+TGG | - | chr8.4:68087260-68087279 | MS.gene79744:intron | 45.0% | |
| AGACAATGTGATGTCTAGCG+CGG | - | chr8.4:68087122-68087141 | MS.gene79744:intron | 45.0% | |
| ATGGACTCAACTTAAGAGCG+TGG | - | chr8.4:68087157-68087176 | MS.gene79744:CDS | 45.0% | |
| CAGCAGCATAATGCTTTACC+TGG | + | chr8.4:68088229-68088248 | None:intergenic | 45.0% | |
| CTAACAGCTTTACCATGACC+AGG | + | chr8.4:68089819-68089838 | None:intergenic | 45.0% | |
| CTCGTTAGATTCTGAACCAC+AGG | + | chr8.4:68090106-68090125 | None:intergenic | 45.0% | |
| CTGCAATGTAGTCTTCATCG+CGG | + | chr8.4:68089009-68089028 | None:intergenic | 45.0% | |
| CTGTGGTTCAGAATCTAACG+AGG | - | chr8.4:68090104-68090123 | MS.gene79744:CDS | 45.0% | |
| GACCAGGTAATGTACACCAA+GGG | + | chr8.4:68089803-68089822 | None:intergenic | 45.0% | |
| GACCCAAAAATGTTTGCCAG+TGG | - | chr8.4:68089416-68089435 | MS.gene79744:intron | 45.0% | |
| GATGAAGACTACATTGCAGC+AGG | - | chr8.4:68089010-68089029 | MS.gene79744:intron | 45.0% | |
| GGCGATAAGACGAAACAAGA+CGG | + | chr8.4:68087297-68087316 | None:intergenic | 45.0% | |
| GTCATGTCTTAAGGCCATCA+TGG | - | chr8.4:68087395-68087414 | MS.gene79744:CDS | 45.0% | |
| GTGCATAATCTAGGTGACCT+TGG | + | chr8.4:68086628-68086647 | None:intergenic | 45.0% | |
| TCAGCCACTGTCTCAATACA+TGG | - | chr8.4:68089352-68089371 | MS.gene79744:intron | 45.0% | |
| TGACCAGGTAATGTACACCA+AGG | + | chr8.4:68089804-68089823 | None:intergenic | 45.0% | |
| TGCTCCATGTATTGAGACAG+TGG | + | chr8.4:68089359-68089378 | None:intergenic | 45.0% | |
| TGGTGTACATTACCTGGTCA+TGG | - | chr8.4:68089804-68089823 | MS.gene79744:CDS | 45.0% | |
| TGTTCCATTACAGGCCATGA+TGG | + | chr8.4:68087412-68087431 | None:intergenic | 45.0% | |
| TTGGATGGATACATTGCCTG+TGG | - | chr8.4:68090087-68090106 | MS.gene79744:CDS | 45.0% | |
| TTTGCTTCCTTAGCTGGATC+TGG | - | chr8.4:68086703-68086722 | MS.gene79744:CDS | 45.0% | |
| ! | ACATGGATGGACTCAGATGT+GGG | - | chr8.4:68089316-68089335 | MS.gene79744:intron | 45.0% |
| ! | ATCCCTTGGTGTACATTACC+TGG | - | chr8.4:68089798-68089817 | MS.gene79744:CDS | 45.0% |
| ! | ATGACTGCAAATAGTGGGAG+AGG | - | chr8.4:68086565-68086584 | MS.gene79744:CDS | 45.0% |
| ! | CATTAGTCTGTCTGGATCTC+TGG | - | chr8.4:68090164-68090183 | MS.gene79744:CDS | 45.0% |
| ! | GAGGAACTGAAGAGCATAAG+AGG | - | chr8.4:68086584-68086603 | MS.gene79744:CDS | 45.0% |
| ! | TCATGGCCTGTAATGGAACA+AGG | - | chr8.4:68087412-68087431 | MS.gene79744:CDS | 45.0% |
| ! | TGGAGCATCAAAAGAGAGCT+TGG | - | chr8.4:68089372-68089391 | MS.gene79744:intron | 45.0% |
| !! | TTGTTTCTAGTGTCTGCTGG+AGG | - | chr8.4:68090615-68090634 | MS.gene79744:CDS | 45.0% |
| !!! | AGCGCGGAATGTTTTAACGA+TGG | - | chr8.4:68087138-68087157 | MS.gene79744:intron | 45.0% |
| AAGGCCATCATGGCCTGTAA+TGG | - | chr8.4:68087405-68087424 | MS.gene79744:CDS | 50.0% | |
| CAAAGCTCAGTTGTGTGTGC+TGG | - | chr8.4:68089128-68089147 | MS.gene79744:CDS | 50.0% | |
| CAAATCTCTGCCAGTGCCAA+TGG | - | chr8.4:68090523-68090542 | MS.gene79744:CDS | 50.0% | |
| CTTGTTGCAGCCAACTCAGT+TGG | - | chr8.4:68090653-68090672 | MS.gene79744:CDS | 50.0% | |
| GAAGACTACATTGCAGCAGG+TGG | - | chr8.4:68089013-68089032 | MS.gene79744:intron | 50.0% | |
| GCACAGGTATCTTGTTCCCA+AGG | + | chr8.4:68087444-68087463 | None:intergenic | 50.0% | |
| TACAGCAAGTTCGAAGAGCG+CGG | - | chr8.4:68088923-68088942 | MS.gene79744:intron | 50.0% | |
| TGAGCTGATTGTGTCGTGAG+AGG | - | chr8.4:68090187-68090206 | MS.gene79744:CDS | 50.0% | |
| TTCTTCGGCTAAATGCAGCG+CGG | + | chr8.4:68090231-68090250 | None:intergenic | 50.0% | |
| TTGTGAGAAGCCATTGGCAC+TGG | + | chr8.4:68090536-68090555 | None:intergenic | 50.0% | |
| ! | CTGGTATTGGGACGAGAAGA+CGG | + | chr8.4:68088210-68088229 | None:intergenic | 50.0% |
| ! | GACATGGATGGACTCAGATG+TGG | - | chr8.4:68089315-68089334 | MS.gene79744:intron | 50.0% |
| AGGAGGTCCAGATCCAGCTA+AGG | + | chr8.4:68086713-68086732 | None:intergenic | 55.0% | |
| CGTCTTCTCGTCCCAATACC+AGG | - | chr8.4:68088208-68088227 | MS.gene79744:CDS | 55.0% | |
| TGGACTCAGATGTGGGATGC+AGG | - | chr8.4:68089323-68089342 | MS.gene79744:intron | 55.0% | |
| TGGGACGAGAAGACGGTTCA+GGG | + | chr8.4:68088203-68088222 | None:intergenic | 55.0% | |
| TTGGGACGAGAAGACGGTTC+AGG | + | chr8.4:68088204-68088223 | None:intergenic | 55.0% | |
| CAGATGTGGGATGCAGGCAC+TGG | - | chr8.4:68089329-68089348 | MS.gene79744:intron | 60.0% | |
| GAGATTCCAAGGCCCGCTCA+AGG | - | chr8.4:68088748-68088767 | MS.gene79744:CDS | 60.0% | |
| GAGCGGGCCTTGGAATCTCA+TGG | + | chr8.4:68088747-68088766 | None:intergenic | 60.0% | |
| CAGCTTCCTTGAGCGGGCCT+TGG | + | chr8.4:68088757-68088776 | None:intergenic | 65.0% | |
| CGGCTGCAGCTTCCTTGAGC+GGG | + | chr8.4:68088763-68088782 | None:intergenic | 65.0% | |
| GCGGCTGCAGCTTCCTTGAG+CGG | + | chr8.4:68088764-68088783 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68086565 | 68090703 | 68086565 | ID=MS.gene79744 |
| chr8.4 | mRNA | 68086565 | 68090703 | 68086565 | ID=MS.gene79744.t1;Parent=MS.gene79744 |
| chr8.4 | exon | 68089504 | 68090703 | 68089504 | ID=MS.gene79744.t1.exon1;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68089504 | 68090703 | 68089504 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| chr8.4 | exon | 68089039 | 68089196 | 68089039 | ID=MS.gene79744.t1.exon2;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68089039 | 68089196 | 68089039 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| chr8.4 | exon | 68088064 | 68088892 | 68088064 | ID=MS.gene79744.t1.exon3;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68088064 | 68088892 | 68088064 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| chr8.4 | exon | 68087790 | 68087936 | 68087790 | ID=MS.gene79744.t1.exon4;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68087790 | 68087936 | 68087790 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| chr8.4 | exon | 68087285 | 68087602 | 68087285 | ID=MS.gene79744.t1.exon5;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68087285 | 68087602 | 68087285 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| chr8.4 | exon | 68087143 | 68087202 | 68087143 | ID=MS.gene79744.t1.exon6;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68087143 | 68087202 | 68087143 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| chr8.4 | exon | 68086565 | 68086759 | 68086565 | ID=MS.gene79744.t1.exon7;Parent=MS.gene79744.t1 |
| chr8.4 | CDS | 68086565 | 68086759 | 68086565 | ID=cds.MS.gene79744.t1;Parent=MS.gene79744.t1 |
| Gene Sequence |
| Protein sequence |
