Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80028.t1 | PNY17507.1 | 95.8 | 311 | 12 | 1 | 2 | 311 | 45 | 355 | 2.20E-167 | 598.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80028.t1 | Q9SS90 | 83.1 | 272 | 46 | 0 | 40 | 311 | 122 | 393 | 4.3e-132 | 472.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80028.t1 | A0A2K3PQF3 | 95.8 | 311 | 12 | 1 | 2 | 311 | 45 | 355 | 1.6e-167 | 598.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049609 | MS.gene80028 | -0.800242 | 1.58E-48 | -1.69E-46 |
| MS.gene050699 | MS.gene80028 | -0.808228 | 3.43E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene80028 | -0.802782 | 4.77E-49 | -1.69E-46 |
| MS.gene052937 | MS.gene80028 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene80028 | -0.816234 | 6.14E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene80028 | -0.813539 | 2.43E-51 | -1.69E-46 |
| MS.gene053549 | MS.gene80028 | 0.828349 | 9.45E-55 | -1.69E-46 |
| MS.gene054435 | MS.gene80028 | 0.800104 | 1.69E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene80028 | -0.817745 | 2.81E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene80028 | -0.802474 | 5.52E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene80028 | -0.800488 | 1.41E-48 | -1.69E-46 |
| MS.gene056408 | MS.gene80028 | 0.822567 | 2.21E-53 | -1.69E-46 |
| MS.gene056610 | MS.gene80028 | -0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene057014 | MS.gene80028 | 0.802082 | 6.64E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene80028 | -0.821289 | 4.37E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene80028 | -0.835427 | 1.69E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene80028 | -0.802664 | 5.04E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene80028 | -0.807255 | 5.53E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80028.t1 | MTR_6g021730 | 98.392 | 311 | 5 | 0 | 1 | 311 | 54 | 364 | 0.0 | 638 |
| MS.gene80028.t1 | MTR_7g033100 | 87.179 | 273 | 35 | 0 | 39 | 311 | 72 | 344 | 2.27e-180 | 504 |
| MS.gene80028.t1 | MTR_7g033100 | 87.179 | 273 | 35 | 0 | 39 | 311 | 72 | 344 | 1.10e-179 | 504 |
| MS.gene80028.t1 | MTR_3g086520 | 78.333 | 300 | 58 | 3 | 19 | 311 | 63 | 362 | 3.54e-174 | 491 |
| MS.gene80028.t1 | MTR_3g086520 | 78.333 | 300 | 58 | 3 | 19 | 311 | 63 | 362 | 4.04e-174 | 490 |
| MS.gene80028.t1 | MTR_3g086520 | 78.333 | 300 | 58 | 3 | 19 | 311 | 60 | 359 | 5.29e-174 | 490 |
| MS.gene80028.t1 | MTR_8g089670 | 77.258 | 299 | 63 | 2 | 18 | 311 | 71 | 369 | 8.93e-171 | 482 |
| MS.gene80028.t1 | MTR_3g075530 | 73.154 | 298 | 74 | 1 | 14 | 311 | 41 | 332 | 8.65e-163 | 460 |
| MS.gene80028.t1 | MTR_3g096520 | 72.075 | 265 | 74 | 0 | 45 | 309 | 79 | 343 | 4.63e-145 | 416 |
| MS.gene80028.t1 | MTR_3g096520 | 72.075 | 265 | 74 | 0 | 45 | 309 | 79 | 343 | 4.88e-145 | 416 |
| MS.gene80028.t1 | MTR_3g096520 | 72.075 | 265 | 74 | 0 | 45 | 309 | 96 | 360 | 1.17e-144 | 415 |
| MS.gene80028.t1 | MTR_2g063857 | 67.647 | 272 | 88 | 0 | 40 | 311 | 61 | 332 | 1.98e-139 | 399 |
| MS.gene80028.t1 | MTR_2g063857 | 67.647 | 272 | 88 | 0 | 40 | 311 | 61 | 332 | 6.14e-139 | 399 |
| MS.gene80028.t1 | MTR_6g092100 | 68.679 | 265 | 81 | 1 | 47 | 311 | 2 | 264 | 1.93e-136 | 389 |
| MS.gene80028.t1 | MTR_8g447220 | 70.677 | 266 | 78 | 0 | 46 | 311 | 52 | 317 | 2.10e-134 | 384 |
| MS.gene80028.t1 | MTR_6g092020 | 66.544 | 272 | 88 | 1 | 40 | 311 | 40 | 308 | 3.01e-134 | 387 |
| MS.gene80028.t1 | MTR_2g063843 | 66.176 | 272 | 89 | 1 | 40 | 311 | 53 | 321 | 2.93e-133 | 384 |
| MS.gene80028.t1 | MTR_8g447220 | 70.943 | 265 | 77 | 0 | 47 | 311 | 53 | 317 | 6.72e-133 | 384 |
| MS.gene80028.t1 | MTR_2g063907 | 65.809 | 272 | 93 | 0 | 40 | 311 | 47 | 318 | 1.48e-132 | 383 |
| MS.gene80028.t1 | MTR_7g081160 | 69.106 | 246 | 71 | 3 | 70 | 311 | 10 | 254 | 1.92e-110 | 330 |
| MS.gene80028.t1 | MTR_7g081170 | 79.375 | 160 | 29 | 2 | 106 | 264 | 86 | 242 | 2.52e-89 | 267 |
| MS.gene80028.t1 | MTR_2g063877 | 52.252 | 111 | 40 | 3 | 126 | 236 | 3 | 100 | 1.60e-31 | 115 |
| MS.gene80028.t1 | MTR_8g096190 | 32.867 | 286 | 147 | 10 | 38 | 303 | 308 | 568 | 2.03e-25 | 106 |
| MS.gene80028.t1 | MTR_8g096190 | 33.333 | 261 | 136 | 9 | 38 | 278 | 308 | 550 | 1.18e-23 | 101 |
| MS.gene80028.t1 | MTR_8g096190 | 34.783 | 230 | 121 | 8 | 38 | 256 | 308 | 519 | 2.74e-23 | 100 |
| MS.gene80028.t1 | MTR_1g048160 | 30.000 | 250 | 132 | 7 | 74 | 303 | 334 | 560 | 4.07e-21 | 94.0 |
| MS.gene80028.t1 | MTR_7g114100 | 29.600 | 250 | 126 | 10 | 74 | 301 | 172 | 393 | 3.39e-19 | 87.8 |
| MS.gene80028.t1 | MTR_7g114130 | 28.112 | 249 | 134 | 8 | 74 | 301 | 338 | 562 | 1.17e-18 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80028.t1 | AT5G14420 | 76.547 | 307 | 58 | 2 | 5 | 311 | 67 | 359 | 1.50e-172 | 486 |
| MS.gene80028.t1 | AT5G14420 | 76.547 | 307 | 58 | 2 | 5 | 311 | 67 | 359 | 1.50e-172 | 486 |
| MS.gene80028.t1 | AT5G14420 | 76.547 | 307 | 58 | 2 | 5 | 311 | 67 | 359 | 1.50e-172 | 486 |
| MS.gene80028.t1 | AT5G14420 | 76.547 | 307 | 58 | 2 | 5 | 311 | 67 | 359 | 1.50e-172 | 486 |
| MS.gene80028.t1 | AT3G01650 | 75.478 | 314 | 57 | 3 | 3 | 311 | 95 | 393 | 1.81e-172 | 487 |
| MS.gene80028.t1 | AT3G01650 | 75.478 | 314 | 57 | 3 | 3 | 311 | 95 | 393 | 1.81e-172 | 487 |
| MS.gene80028.t1 | AT1G67800 | 78.148 | 270 | 59 | 0 | 42 | 311 | 81 | 350 | 3.29e-161 | 455 |
| MS.gene80028.t1 | AT1G67800 | 78.148 | 270 | 59 | 0 | 42 | 311 | 61 | 330 | 4.01e-161 | 456 |
| MS.gene80028.t1 | AT1G67800 | 78.148 | 270 | 59 | 0 | 42 | 311 | 61 | 330 | 4.01e-161 | 456 |
| MS.gene80028.t1 | AT1G67800 | 78.148 | 270 | 59 | 0 | 42 | 311 | 61 | 330 | 4.01e-161 | 456 |
| MS.gene80028.t1 | AT1G67800 | 78.148 | 270 | 59 | 0 | 42 | 311 | 61 | 330 | 4.01e-161 | 456 |
| MS.gene80028.t1 | AT1G67800 | 78.148 | 270 | 59 | 0 | 42 | 311 | 81 | 350 | 1.53e-160 | 456 |
| MS.gene80028.t1 | AT5G63970 | 67.293 | 266 | 87 | 0 | 43 | 308 | 6 | 271 | 1.30e-133 | 384 |
| MS.gene80028.t1 | AT5G63970 | 67.293 | 266 | 87 | 0 | 43 | 308 | 6 | 271 | 1.30e-133 | 384 |
| MS.gene80028.t1 | AT1G79380 | 63.736 | 273 | 99 | 0 | 39 | 311 | 44 | 316 | 1.79e-131 | 380 |
| MS.gene80028.t1 | AT1G24545 | 53.211 | 109 | 13 | 1 | 89 | 197 | 46 | 116 | 4.93e-30 | 112 |
| MS.gene80028.t1 | AT5G07300 | 30.741 | 270 | 137 | 11 | 58 | 301 | 322 | 567 | 5.18e-22 | 96.7 |
| MS.gene80028.t1 | AT5G61910 | 30.627 | 271 | 136 | 11 | 58 | 301 | 1087 | 1332 | 1.68e-21 | 95.5 |
| MS.gene80028.t1 | AT5G61900 | 31.111 | 270 | 136 | 10 | 58 | 301 | 319 | 564 | 7.53e-21 | 93.2 |
| MS.gene80028.t1 | AT5G61900 | 31.111 | 270 | 136 | 10 | 58 | 301 | 319 | 564 | 7.53e-21 | 93.2 |
| MS.gene80028.t1 | AT1G08860 | 29.097 | 299 | 158 | 11 | 24 | 301 | 302 | 567 | 2.48e-20 | 91.7 |
Find 79 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAGGCAATATCCATTAT+TGG | 0.248847 | 6.1:+5169573 | MS.gene80028:CDS |
| GTTCCTAATATTAAACTTGC+AGG | 0.276620 | 6.1:+5169841 | MS.gene80028:CDS |
| GAGTCTTCCAATCTTATTCT+TGG | 0.276878 | 6.1:+5169360 | MS.gene80028:CDS |
| ATACCTGCAAGTTTAATATT+AGG | 0.295403 | 6.1:-5169844 | None:intergenic |
| GATAACTTGATTCCTTGTTT+TGG | 0.309163 | 6.1:+5169621 | MS.gene80028:CDS |
| AATGGATATTGCCTGTTCAT+AGG | 0.310815 | 6.1:-5169568 | None:intergenic |
| CTTTGCACCCATTGTTGAAA+TGG | 0.321773 | 6.1:+5169975 | MS.gene80028:CDS |
| CCTCCTCCTCCGCAAAACTA+TGG | 0.332154 | 6.1:+5168898 | MS.gene80028:CDS |
| GGAAATTCCTTCTCAGTATA+AGG | 0.336846 | 6.1:+5170872 | MS.gene80028:CDS |
| ATTTCCTCTTTCGATCATAT+TGG | 0.366765 | 6.1:+5170576 | MS.gene80028:CDS |
| AACAGGCAATATCCATTATT+GGG | 0.375499 | 6.1:+5169574 | MS.gene80028:CDS |
| ATTTGCTCTCGCAGCATTGA+TGG | 0.382499 | 6.1:+5170851 | MS.gene80028:CDS |
| GGAGGTCGGGCATCATAATA+TGG | 0.386227 | 6.1:-5168877 | None:intergenic |
| ATCAATTCCAAGAATAAGAT+TGG | 0.395299 | 6.1:-5169367 | None:intergenic |
| TGGAGGCCAATACCATGTTT+TGG | 0.401526 | 6.1:+5170020 | MS.gene80028:CDS |
| CCATTGCAAAATCTTTCATC+TGG | 0.405804 | 6.1:-5169784 | None:intergenic |
| TTGCGGAGGAGGAGGAGGTC+GGG | 0.429594 | 6.1:-5168890 | None:intergenic |
| GTCATGGCCATTTCAACAAT+GGG | 0.437074 | 6.1:-5169982 | None:intergenic |
| TGGTGTTGGAGATGGACCTT+GGG | 0.447860 | 6.1:+5170600 | MS.gene80028:CDS |
| GCAATAGAGCTTAATCTACT+TGG | 0.451020 | 6.1:+5170897 | MS.gene80028:CDS |
| TCTTTAGTTTGTGAATTTCA+CGG | 0.452739 | 6.1:+5170785 | MS.gene80028:intron |
| ACCTGTCCACTCGTTGCTCT+TGG | 0.464264 | 6.1:-5169394 | None:intergenic |
| TTATCACCAAAACATGGTAT+TGG | 0.464748 | 6.1:-5170026 | None:intergenic |
| ATGGATATTGCCTGTTCATA+GGG | 0.464896 | 6.1:-5169567 | None:intergenic |
| TTGGTGTTGGAGATGGACCT+TGG | 0.465147 | 6.1:+5170599 | MS.gene80028:CDS |
| CATTCCTCCTTCACGAAAAG+AGG | 0.466144 | 6.1:+5170824 | MS.gene80028:CDS |
| ATTGCCTGTTCATAGGGATT+CGG | 0.466672 | 6.1:-5169561 | None:intergenic |
| ACGATCAGAGAAAGTTAGAT+AGG | 0.468557 | 6.1:+5168959 | MS.gene80028:CDS |
| TCGATCATATTGGTTGGTGT+TGG | 0.471572 | 6.1:+5170586 | MS.gene80028:CDS |
| ACAATGGGTGCAAAGGATGT+AGG | 0.479320 | 6.1:-5169967 | None:intergenic |
| GGCACTCTGCCACTAGTTTG+AGG | 0.484672 | 6.1:-5168928 | None:intergenic |
| CTTTCTCTGATCGTCATGAC+GGG | 0.486062 | 6.1:-5168950 | None:intergenic |
| TCATAATATGGTTGATAAGA+AGG | 0.493839 | 6.1:-5168865 | None:intergenic |
| TGGTCCGAATCCCTATGAAC+AGG | 0.495929 | 6.1:+5169557 | MS.gene80028:CDS |
| ACTGAAGCTCTTGCACGTGC+AGG | 0.500884 | 6.1:+5169333 | MS.gene80028:CDS |
| GGTGATAATTGCAGATGGCC+AGG | 0.501144 | 6.1:+5170041 | MS.gene80028:CDS |
| CAATGGGTGCAAAGGATGTA+GGG | 0.505612 | 6.1:-5169966 | None:intergenic |
| TTTGCGGAGGAGGAGGAGGT+CGG | 0.506457 | 6.1:-5168891 | None:intergenic |
| TGGATGCCATTGTCGAGGCC+AGG | 0.508765 | 6.1:+5170473 | MS.gene80028:CDS |
| CCAACCAATATGATCGAAAG+AGG | 0.511733 | 6.1:-5170580 | None:intergenic |
| ACATGGGAGGCTCAGTCCAC+AGG | 0.514845 | 6.1:+5170438 | MS.gene80028:CDS |
| AAATTATCGAAGGCCCTAGC+TGG | 0.518132 | 6.1:-5170652 | None:intergenic |
| CCTCTTTCGATCATATTGGT+TGG | 0.522830 | 6.1:+5170580 | MS.gene80028:CDS |
| TCCACGGTCTTCTGCTCCTG+TGG | 0.524421 | 6.1:-5170454 | None:intergenic |
| ACTTTCTCTGATCGTCATGA+CGG | 0.526481 | 6.1:-5168951 | None:intergenic |
| ATATTGGTTGGTGTTGGAGA+TGG | 0.526977 | 6.1:+5170592 | MS.gene80028:CDS |
| ACCAAGAGCAACGAGTGGAC+AGG | 0.529829 | 6.1:+5169393 | MS.gene80028:CDS |
| GGCCTCGACAATGGCATCCA+CGG | 0.533160 | 6.1:-5170470 | None:intergenic |
| TTGATGACAATATGCCAGCT+AGG | 0.536974 | 6.1:+5170638 | MS.gene80028:CDS |
| TGTCATGGCCATTTCAACAA+TGG | 0.538180 | 6.1:-5169983 | None:intergenic |
| AGCTTGCATCACATCGGGAA+TGG | 0.543450 | 6.1:+5169537 | MS.gene80028:CDS |
| ATCCATTATTGGGAAAACCT+TGG | 0.543835 | 6.1:+5169584 | MS.gene80028:CDS |
| AGAAGTATTGACACTGAACA+TGG | 0.549006 | 6.1:+5170421 | MS.gene80028:CDS |
| CATTTCAACAATGGGTGCAA+AGG | 0.552326 | 6.1:-5169974 | None:intergenic |
| TGGACCTTGGGACATGATGA+AGG | 0.552430 | 6.1:+5170612 | MS.gene80028:CDS |
| ATCCTCATCAAATGCAGCCA+AGG | 0.564689 | 6.1:-5169601 | None:intergenic |
| CAATAGAGCTTAATCTACTT+GGG | 0.567533 | 6.1:+5170898 | MS.gene80028:CDS |
| TTATCACCTGGCCTCGACAA+TGG | 0.576692 | 6.1:-5170479 | None:intergenic |
| ATTGCAGCCTTATACTGAGA+AGG | 0.585676 | 6.1:-5170879 | None:intergenic |
| AACCTTGGCTGCATTTGATG+AGG | 0.588955 | 6.1:+5169599 | MS.gene80028:CDS |
| GAATAAGATTGGAAGACTCA+AGG | 0.592639 | 6.1:-5169356 | None:intergenic |
| TGATGACAATATGCCAGCTA+GGG | 0.594660 | 6.1:+5170639 | MS.gene80028:CDS |
| AACTCCTTCATCATGTCCCA+AGG | 0.595718 | 6.1:-5170616 | None:intergenic |
| GTTTACCTGAAAATTATCGA+AGG | 0.611679 | 6.1:-5170662 | None:intergenic |
| GGATATGAGCCTCAAACTAG+TGG | 0.613808 | 6.1:+5168919 | MS.gene80028:CDS |
| GACCGTGGATGCCATTGTCG+AGG | 0.620761 | 6.1:+5170468 | MS.gene80028:CDS |
| CCATCCCCGAATCCAAAACA+AGG | 0.621252 | 6.1:-5169633 | None:intergenic |
| CTGCAATTATCACCAAAACA+TGG | 0.636469 | 6.1:-5170032 | None:intergenic |
| ACTCTGCTCAACGATTGTCA+TGG | 0.648042 | 6.1:-5169998 | None:intergenic |
| GGTTGTTGTGACTCGTGCGT+AGG | 0.650682 | 6.1:-5168844 | None:intergenic |
| ACAATCGTTGAGCAGAGTGG+AGG | 0.656204 | 6.1:+5170003 | MS.gene80028:CDS |
| ATGACAATCGTTGAGCAGAG+TGG | 0.657140 | 6.1:+5170000 | MS.gene80028:CDS |
| AGTTAGATAGGAAATACTCA+AGG | 0.660548 | 6.1:+5168971 | MS.gene80028:CDS |
| ATTTCACCAAGAGCAACGAG+TGG | 0.683170 | 6.1:+5169388 | MS.gene80028:CDS |
| TCCACAGGAGCAGAAGACCG+TGG | 0.684259 | 6.1:+5170453 | MS.gene80028:CDS |
| GAAGTATTGACACTGAACAT+GGG | 0.689699 | 6.1:+5170422 | MS.gene80028:CDS |
| GTATTGACACTGAACATGGG+AGG | 0.694374 | 6.1:+5170425 | MS.gene80028:CDS |
| TTTCTCTGATCGTCATGACG+GGG | 0.719608 | 6.1:-5168949 | None:intergenic |
| TAATTACAACTCCATAGACG+AGG | 0.735332 | 6.1:+5169002 | MS.gene80028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATAAATGTATAGATA+TGG | - | chr6.1:5169424-5169443 | None:intergenic | 15.0% |
| !! | ACTTGTATTTATAATTACAA+TGG | + | chr6.1:5170235-5170254 | MS.gene80028:intron | 15.0% |
| !! | AGATAAAAACTATACAAAAT+CGG | - | chr6.1:5169046-5169065 | None:intergenic | 15.0% |
| !!! | GTTAAAATGTTCTAAAATTT+TGG | + | chr6.1:5170723-5170742 | MS.gene80028:intron | 15.0% |
| !!! | TTATTCATCTTTTTTCTTTT+GGG | + | chr6.1:5169232-5169251 | MS.gene80028:intron | 15.0% |
| !! | ATGAATAGAAAGATAAATGA+AGG | - | chr6.1:5170143-5170162 | None:intergenic | 20.0% |
| !! | TTATACTTATATCTCATTAC+AGG | + | chr6.1:5169308-5169327 | MS.gene80028:intron | 20.0% |
| !! | TTATCTTTCTATTCATTCAA+AGG | + | chr6.1:5170147-5170166 | MS.gene80028:intron | 20.0% |
| !!! | CTTATTCATCTTTTTTCTTT+TGG | + | chr6.1:5169231-5169250 | MS.gene80028:intron | 20.0% |
| !!! | GTATTGATATTTATGTGATT+TGG | + | chr6.1:5169144-5169163 | MS.gene80028:intron | 20.0% |
| !!! | TATTGTAGAATTTTTGTTTG+TGG | + | chr6.1:5169685-5169704 | MS.gene80028:intron | 20.0% |
| !!! | TTATAATTACAATGGTGTTA+CGG | + | chr6.1:5170243-5170262 | MS.gene80028:intron | 20.0% |
| ! | ATACCTGCAAGTTTAATATT+AGG | - | chr6.1:5169847-5169866 | None:intergenic | 25.0% |
| ! | ATCAATTCCAAGAATAAGAT+TGG | - | chr6.1:5169370-5169389 | None:intergenic | 25.0% |
| ! | ATTCATCATCTGAATTATTG+TGG | + | chr6.1:5170747-5170766 | MS.gene80028:intron | 25.0% |
| ! | CATTCAAAGGAAAAAGTAAT+TGG | + | chr6.1:5170160-5170179 | MS.gene80028:intron | 25.0% |
| ! | CTTAATTCTAACAATGTAGA+TGG | + | chr6.1:5170377-5170396 | MS.gene80028:intron | 25.0% |
| ! | TATTGTTTAGGAATATTGAC+AGG | + | chr6.1:5170350-5170369 | MS.gene80028:intron | 25.0% |
| !!! | AATACTTATGTTTTAACGTC+AGG | + | chr6.1:5169943-5169962 | MS.gene80028:intron | 25.0% |
| !!! | TCATAATATGGTTGATAAGA+AGG | - | chr6.1:5168868-5168887 | None:intergenic | 25.0% |
| !!! | TCTTTAGTTTGTGAATTTCA+CGG | + | chr6.1:5170785-5170804 | MS.gene80028:intron | 25.0% |
| AAAGATAACCCTAAACATAC+TGG | - | chr6.1:5170082-5170101 | None:intergenic | 30.0% | |
| AACAGGCAATATCCATTATT+GGG | + | chr6.1:5169574-5169593 | MS.gene80028:CDS | 30.0% | |
| AAGATAACCCTAAACATACT+GGG | - | chr6.1:5170081-5170100 | None:intergenic | 30.0% | |
| AGACAAGATGTTCGTAAAAA+CGG | - | chr6.1:5170532-5170551 | None:intergenic | 30.0% | |
| AGATGAATAAGTAGCATTGT+CGG | - | chr6.1:5169222-5169241 | None:intergenic | 30.0% | |
| AGTTAGATAGGAAATACTCA+AGG | + | chr6.1:5168971-5168990 | MS.gene80028:CDS | 30.0% | |
| ATTCTTTACCCAGTATGTTT+AGG | + | chr6.1:5170070-5170089 | MS.gene80028:intron | 30.0% | |
| ATTTCCTCTTTCGATCATAT+TGG | + | chr6.1:5170576-5170595 | MS.gene80028:CDS | 30.0% | |
| CAATAGAGCTTAATCTACTT+GGG | + | chr6.1:5170898-5170917 | MS.gene80028:CDS | 30.0% | |
| GAAGAAAAAGATATCAGCAT+GGG | - | chr6.1:5169089-5169108 | None:intergenic | 30.0% | |
| GGAATATTAGCAAGTAATGA+AGG | + | chr6.1:5170321-5170340 | MS.gene80028:intron | 30.0% | |
| GTTCCTAATATTAAACTTGC+AGG | + | chr6.1:5169841-5169860 | MS.gene80028:CDS | 30.0% | |
| GTTTACCTGAAAATTATCGA+AGG | - | chr6.1:5170665-5170684 | None:intergenic | 30.0% | |
| TAGGTTAGTGCTAATCAATT+GGG | - | chr6.1:5170284-5170303 | None:intergenic | 30.0% | |
| TGAAGGAAGTTGTATTGTTT+AGG | + | chr6.1:5170338-5170357 | MS.gene80028:intron | 30.0% | |
| TTATCACCAAAACATGGTAT+TGG | - | chr6.1:5170029-5170048 | None:intergenic | 30.0% | |
| TTCTTTACCCAGTATGTTTA+GGG | + | chr6.1:5170071-5170090 | MS.gene80028:intron | 30.0% | |
| ! | GATATTTATGTGATTTGGCA+TGG | + | chr6.1:5169149-5169168 | MS.gene80028:intron | 30.0% |
| ! | GTGGTTTAAAATGTGCTAAT+GGG | + | chr6.1:5169704-5169723 | MS.gene80028:intron | 30.0% |
| ! | TGTGGTTTAAAATGTGCTAA+TGG | + | chr6.1:5169703-5169722 | MS.gene80028:intron | 30.0% |
| !! | GATAACTTGATTCCTTGTTT+TGG | + | chr6.1:5169621-5169640 | MS.gene80028:CDS | 30.0% |
| !! | TGTAGAGCTTTAAATTCATC+AGG | - | chr6.1:5169111-5169130 | None:intergenic | 30.0% |
| !!! | GATTTGAAGAAGTTTTGAGT+CGG | + | chr6.1:5169806-5169825 | MS.gene80028:CDS | 30.0% |
| !!! | TTGATTCCTTGTTTTGGATT+CGG | + | chr6.1:5169627-5169646 | MS.gene80028:CDS | 30.0% |
| AATGGATATTGCCTGTTCAT+AGG | - | chr6.1:5169571-5169590 | None:intergenic | 35.0% | |
| ACGATCAGAGAAAGTTAGAT+AGG | + | chr6.1:5168959-5168978 | MS.gene80028:CDS | 35.0% | |
| AGAAAAAGCTTGCATCACAT+CGG | + | chr6.1:5169531-5169550 | MS.gene80028:CDS | 35.0% | |
| ATAAGAGCAACAAGACAAGT+AGG | - | chr6.1:5169876-5169895 | None:intergenic | 35.0% | |
| ATCCATTATTGGGAAAACCT+TGG | + | chr6.1:5169584-5169603 | MS.gene80028:CDS | 35.0% | |
| ATGGATATTGCCTGTTCATA+GGG | - | chr6.1:5169570-5169589 | None:intergenic | 35.0% | |
| CAATTGATTAGCACTAACCT+AGG | + | chr6.1:5170283-5170302 | MS.gene80028:intron | 35.0% | |
| CCATTGCAAAATCTTTCATC+TGG | - | chr6.1:5169787-5169806 | None:intergenic | 35.0% | |
| CTAGGTTAGTGCTAATCAAT+TGG | - | chr6.1:5170285-5170304 | None:intergenic | 35.0% | |
| CTGCAATTATCACCAAAACA+TGG | - | chr6.1:5170035-5170054 | None:intergenic | 35.0% | |
| GAACAGGCAATATCCATTAT+TGG | + | chr6.1:5169573-5169592 | MS.gene80028:CDS | 35.0% | |
| GAATAAGATTGGAAGACTCA+AGG | - | chr6.1:5169359-5169378 | None:intergenic | 35.0% | |
| GAGTCTTCCAATCTTATTCT+TGG | + | chr6.1:5169360-5169379 | MS.gene80028:CDS | 35.0% | |
| GCAATAGAGCTTAATCTACT+TGG | + | chr6.1:5170897-5170916 | MS.gene80028:CDS | 35.0% | |
| GGAAATTCCTTCTCAGTATA+AGG | + | chr6.1:5170872-5170891 | MS.gene80028:CDS | 35.0% | |
| GGAAGAAAAAGATATCAGCA+TGG | - | chr6.1:5169090-5169109 | None:intergenic | 35.0% | |
| TAATTACAACTCCATAGACG+AGG | + | chr6.1:5169002-5169021 | MS.gene80028:CDS | 35.0% | |
| TGGGTAAAGAATAGAATACC+TGG | - | chr6.1:5170062-5170081 | None:intergenic | 35.0% | |
| TTGATGCTGCCATAATATCA+CGG | - | chr6.1:5169735-5169754 | None:intergenic | 35.0% | |
| ! | CCAGATGAAAGATTTTGCAA+TGG | + | chr6.1:5169784-5169803 | MS.gene80028:CDS | 35.0% |
| !! | ACAATGTAGATGGCTTTGTT+TGG | + | chr6.1:5170387-5170406 | MS.gene80028:intron | 35.0% |
| !! | AGAAGTATTGACACTGAACA+TGG | + | chr6.1:5170421-5170440 | MS.gene80028:CDS | 35.0% |
| !! | GAAGTATTGACACTGAACAT+GGG | + | chr6.1:5170422-5170441 | MS.gene80028:CDS | 35.0% |
| !! | GTTTTGGTGATAATTGCAGA+TGG | + | chr6.1:5170036-5170055 | MS.gene80028:CDS | 35.0% |
| !!! | AAGAAGTTTTGAGTCGGTAT+AGG | + | chr6.1:5169812-5169831 | MS.gene80028:CDS | 35.0% |
| !!! | AGAAGTTTTGAGTCGGTATA+GGG | + | chr6.1:5169813-5169832 | MS.gene80028:CDS | 35.0% |
| !!! | AGCATTTTTTACCTCGTCTA+TGG | - | chr6.1:5169016-5169035 | None:intergenic | 35.0% |
| !!! | TGATTCCTTGTTTTGGATTC+GGG | + | chr6.1:5169628-5169647 | MS.gene80028:CDS | 35.0% |
| AACTTTGCAGCATTATCACC+TGG | - | chr6.1:5170494-5170513 | None:intergenic | 40.0% | |
| ACTTTCTCTGATCGTCATGA+CGG | - | chr6.1:5168954-5168973 | None:intergenic | 40.0% | |
| ATGAAGGAGAAAGCAAGAAG+CGG | - | chr6.1:5170127-5170146 | None:intergenic | 40.0% | |
| ATTGCCTGTTCATAGGGATT+CGG | - | chr6.1:5169564-5169583 | None:intergenic | 40.0% | |
| CATTTCAACAATGGGTGCAA+AGG | - | chr6.1:5169977-5169996 | None:intergenic | 40.0% | |
| CCAACCAATATGATCGAAAG+AGG | - | chr6.1:5170583-5170602 | None:intergenic | 40.0% | |
| CCTAGACTATACAGTTTCCT+AGG | - | chr6.1:5170303-5170322 | None:intergenic | 40.0% | |
| CCTAGGAAACTGTATAGTCT+AGG | + | chr6.1:5170300-5170319 | MS.gene80028:intron | 40.0% | |
| CCTCTTTCGATCATATTGGT+TGG | + | chr6.1:5170580-5170599 | MS.gene80028:CDS | 40.0% | |
| CTTTGCACCCATTGTTGAAA+TGG | + | chr6.1:5169975-5169994 | MS.gene80028:CDS | 40.0% | |
| GAAAAAGCTTGCATCACATC+GGG | + | chr6.1:5169532-5169551 | MS.gene80028:CDS | 40.0% | |
| GTCATGGCCATTTCAACAAT+GGG | - | chr6.1:5169985-5170004 | None:intergenic | 40.0% | |
| TGATGACAATATGCCAGCTA+GGG | + | chr6.1:5170639-5170658 | MS.gene80028:CDS | 40.0% | |
| TGGGCATTACCGTGATATTA+TGG | + | chr6.1:5169723-5169742 | MS.gene80028:intron | 40.0% | |
| TGTCATGGCCATTTCAACAA+TGG | - | chr6.1:5169986-5170005 | None:intergenic | 40.0% | |
| TTGAGCAAATCAGAGAAGAC+TGG | + | chr6.1:5170100-5170119 | MS.gene80028:intron | 40.0% | |
| ! | AGCCAACATCATTTTCAACC+AGG | - | chr6.1:5169175-5169194 | None:intergenic | 40.0% |
| ! | AGCCAAGGTTTTCCCAATAA+TGG | - | chr6.1:5169589-5169608 | None:intergenic | 40.0% |
| ! | ATTGCAGCCTTATACTGAGA+AGG | - | chr6.1:5170882-5170901 | None:intergenic | 40.0% |
| ! | TAGGGCCTTCGATAATTTTC+AGG | + | chr6.1:5170657-5170676 | MS.gene80028:CDS | 40.0% |
| ! | TCGATCATATTGGTTGGTGT+TGG | + | chr6.1:5170586-5170605 | MS.gene80028:CDS | 40.0% |
| ! | TTGATGACAATATGCCAGCT+AGG | + | chr6.1:5170638-5170657 | MS.gene80028:CDS | 40.0% |
| !! | ATATTGGTTGGTGTTGGAGA+TGG | + | chr6.1:5170592-5170611 | MS.gene80028:CDS | 40.0% |
| !! | GGCTCATATCCATAGTTTTG+CGG | - | chr6.1:5168910-5168929 | None:intergenic | 40.0% |
| !! | TCATATCCATAGTTTTGCGG+AGG | - | chr6.1:5168907-5168926 | None:intergenic | 40.0% |
| !!! | GATTCCTTGTTTTGGATTCG+GGG | + | chr6.1:5169629-5169648 | MS.gene80028:CDS | 40.0% |
| AAATTATCGAAGGCCCTAGC+TGG | - | chr6.1:5170655-5170674 | None:intergenic | 45.0% | |
| AACCTTGGCTGCATTTGATG+AGG | + | chr6.1:5169599-5169618 | MS.gene80028:CDS | 45.0% | |
| AACTCCTTCATCATGTCCCA+AGG | - | chr6.1:5170619-5170638 | None:intergenic | 45.0% | |
| AAGTAGCATTGTCGGTGAGA+AGG | - | chr6.1:5169214-5169233 | None:intergenic | 45.0% | |
| ACAATGGGTGCAAAGGATGT+AGG | - | chr6.1:5169970-5169989 | None:intergenic | 45.0% | |
| ACTCTGCTCAACGATTGTCA+TGG | - | chr6.1:5170001-5170020 | None:intergenic | 45.0% | |
| ATCCTCATCAAATGCAGCCA+AGG | - | chr6.1:5169604-5169623 | None:intergenic | 45.0% | |
| ATGACAATCGTTGAGCAGAG+TGG | + | chr6.1:5170000-5170019 | MS.gene80028:CDS | 45.0% | |
| ATTTCACCAAGAGCAACGAG+TGG | + | chr6.1:5169388-5169407 | MS.gene80028:CDS | 45.0% | |
| CAATGGGTGCAAAGGATGTA+GGG | - | chr6.1:5169969-5169988 | None:intergenic | 45.0% | |
| CATTCCTCCTTCACGAAAAG+AGG | + | chr6.1:5170824-5170843 | MS.gene80028:CDS | 45.0% | |
| CTTTCTCTGATCGTCATGAC+GGG | - | chr6.1:5168953-5168972 | None:intergenic | 45.0% | |
| GGATATGAGCCTCAAACTAG+TGG | + | chr6.1:5168919-5168938 | MS.gene80028:CDS | 45.0% | |
| GGCCTGGTTGAAAATGATGT+TGG | + | chr6.1:5169170-5169189 | MS.gene80028:intron | 45.0% | |
| TTTCTCTGATCGTCATGACG+GGG | - | chr6.1:5168952-5168971 | None:intergenic | 45.0% | |
| ! | AATGCTGCCTCTTTTCGTGA+AGG | - | chr6.1:5170834-5170853 | None:intergenic | 45.0% |
| ! | ATTTGCTCTCGCAGCATTGA+TGG | + | chr6.1:5170851-5170870 | MS.gene80028:CDS | 45.0% |
| ! | GTATTGACACTGAACATGGG+AGG | + | chr6.1:5170425-5170444 | MS.gene80028:CDS | 45.0% |
| ! | TGGAGGCCAATACCATGTTT+TGG | + | chr6.1:5170020-5170039 | MS.gene80028:CDS | 45.0% |
| ! | TTATGTGATTTGGCATGGCC+TGG | + | chr6.1:5169154-5169173 | MS.gene80028:intron | 45.0% |
| !! | TAGATGGCTTTGTTTGGTGC+AGG | + | chr6.1:5170393-5170412 | MS.gene80028:intron | 45.0% |
| !! | TATCCATAGTTTTGCGGAGG+AGG | - | chr6.1:5168904-5168923 | None:intergenic | 45.0% |
| ACAATCGTTGAGCAGAGTGG+AGG | + | chr6.1:5170003-5170022 | MS.gene80028:CDS | 50.0% | |
| AGCTTGCATCACATCGGGAA+TGG | + | chr6.1:5169537-5169556 | MS.gene80028:CDS | 50.0% | |
| CCATCCCCGAATCCAAAACA+AGG | - | chr6.1:5169636-5169655 | None:intergenic | 50.0% | |
| GGAGGTCGGGCATCATAATA+TGG | - | chr6.1:5168880-5168899 | None:intergenic | 50.0% | |
| GGTGATAATTGCAGATGGCC+AGG | + | chr6.1:5170041-5170060 | MS.gene80028:CDS | 50.0% | |
| TGGACCTTGGGACATGATGA+AGG | + | chr6.1:5170612-5170631 | MS.gene80028:CDS | 50.0% | |
| TGGTCCGAATCCCTATGAAC+AGG | + | chr6.1:5169557-5169576 | MS.gene80028:CDS | 50.0% | |
| TTATCACCTGGCCTCGACAA+TGG | - | chr6.1:5170482-5170501 | None:intergenic | 50.0% | |
| ! | TGGTGTTGGAGATGGACCTT+GGG | + | chr6.1:5170600-5170619 | MS.gene80028:CDS | 50.0% |
| !! | CTGAGCTCGATGTTGCTTTC+AGG | + | chr6.1:5169492-5169511 | MS.gene80028:intron | 50.0% |
| !! | TTGGTGTTGGAGATGGACCT+TGG | + | chr6.1:5170599-5170618 | MS.gene80028:CDS | 50.0% |
| !!! | CCTTGTTTTGGATTCGGGGA+TGG | + | chr6.1:5169633-5169652 | MS.gene80028:CDS | 50.0% |
| ACCAAGAGCAACGAGTGGAC+AGG | + | chr6.1:5169393-5169412 | MS.gene80028:CDS | 55.0% | |
| ACCTGTCCACTCGTTGCTCT+TGG | - | chr6.1:5169397-5169416 | None:intergenic | 55.0% | |
| ACTGAAGCTCTTGCACGTGC+AGG | + | chr6.1:5169333-5169352 | MS.gene80028:CDS | 55.0% | |
| CCTCCTCCTCCGCAAAACTA+TGG | + | chr6.1:5168898-5168917 | MS.gene80028:CDS | 55.0% | |
| GAGCAACGAGTGGACAGGTT+AGG | + | chr6.1:5169398-5169417 | MS.gene80028:intron | 55.0% | |
| GGTTGTTGTGACTCGTGCGT+AGG | - | chr6.1:5168847-5168866 | None:intergenic | 55.0% | |
| ! | GCTGCCTCTTTTCGTGAAGG+AGG | - | chr6.1:5170831-5170850 | None:intergenic | 55.0% |
| ! | GGCACTCTGCCACTAGTTTG+AGG | - | chr6.1:5168931-5168950 | None:intergenic | 55.0% |
| !! | CCATAGTTTTGCGGAGGAGG+AGG | - | chr6.1:5168901-5168920 | None:intergenic | 55.0% |
| !! | TAGTTTTGCGGAGGAGGAGG+AGG | - | chr6.1:5168898-5168917 | None:intergenic | 55.0% |
| ACATGGGAGGCTCAGTCCAC+AGG | + | chr6.1:5170438-5170457 | MS.gene80028:CDS | 60.0% | |
| GACCGTGGATGCCATTGTCG+AGG | + | chr6.1:5170468-5170487 | MS.gene80028:CDS | 60.0% | |
| GGCCTCGACAATGGCATCCA+CGG | - | chr6.1:5170473-5170492 | None:intergenic | 60.0% | |
| TCCACAGGAGCAGAAGACCG+TGG | + | chr6.1:5170453-5170472 | MS.gene80028:CDS | 60.0% | |
| TCCACGGTCTTCTGCTCCTG+TGG | - | chr6.1:5170457-5170476 | None:intergenic | 60.0% | |
| TGGATGCCATTGTCGAGGCC+AGG | + | chr6.1:5170473-5170492 | MS.gene80028:CDS | 60.0% | |
| TTTGCGGAGGAGGAGGAGGT+CGG | - | chr6.1:5168894-5168913 | None:intergenic | 60.0% | |
| TTGCGGAGGAGGAGGAGGTC+GGG | - | chr6.1:5168893-5168912 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 5168844 | 5170923 | 5168844 | ID=MS.gene80028 |
| chr6.1 | mRNA | 5168844 | 5170923 | 5168844 | ID=MS.gene80028.t1;Parent=MS.gene80028 |
| chr6.1 | exon | 5168844 | 5169023 | 5168844 | ID=MS.gene80028.t1.exon1;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5168844 | 5169023 | 5168844 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5169330 | 5169414 | 5169330 | ID=MS.gene80028.t1.exon2;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5169330 | 5169414 | 5169330 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5169514 | 5169654 | 5169514 | ID=MS.gene80028.t1.exon3;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5169514 | 5169654 | 5169514 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5169749 | 5169862 | 5169749 | ID=MS.gene80028.t1.exon4;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5169749 | 5169862 | 5169749 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5169965 | 5170062 | 5169965 | ID=MS.gene80028.t1.exon5;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5169965 | 5170062 | 5169965 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5170415 | 5170494 | 5170415 | ID=MS.gene80028.t1.exon6;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5170415 | 5170494 | 5170415 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5170573 | 5170678 | 5170573 | ID=MS.gene80028.t1.exon7;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5170573 | 5170678 | 5170573 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| chr6.1 | exon | 5170792 | 5170923 | 5170792 | ID=MS.gene80028.t1.exon8;Parent=MS.gene80028.t1 |
| chr6.1 | CDS | 5170792 | 5170923 | 5170792 | ID=cds.MS.gene80028.t1;Parent=MS.gene80028.t1 |
| Gene Sequence |
| Protein sequence |
