Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80792.t1 | XP_003616582.1 | 97.9 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 1.30E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80792.t1 | O04202 | 71.5 | 291 | 75 | 1 | 2 | 284 | 3 | 293 | 1.0e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80792.t1 | G7KBY4 | 97.9 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 9.0e-154 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37293 | MS.gene80792 | PPI |
| MS.gene017884 | MS.gene80792 | PPI |
| MS.gene008081 | MS.gene80792 | PPI |
| MS.gene057320 | MS.gene80792 | PPI |
| MS.gene018310 | MS.gene80792 | PPI |
| MS.gene014112 | MS.gene80792 | PPI |
| MS.gene39043 | MS.gene80792 | PPI |
| MS.gene031999 | MS.gene80792 | PPI |
| MS.gene69251 | MS.gene80792 | PPI |
| MS.gene80792 | MS.gene80661 | PPI |
| MS.gene80792 | MS.gene86150 | PPI |
| MS.gene29607 | MS.gene80792 | PPI |
| MS.gene42526 | MS.gene80792 | PPI |
| MS.gene018309 | MS.gene80792 | PPI |
| MS.gene56675 | MS.gene80792 | PPI |
| MS.gene80792 | MS.gene80790 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80792.t1 | MTR_5g082000 | 97.887 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 0.0 | 573 |
| MS.gene80792.t1 | MTR_3g070190 | 87.500 | 288 | 32 | 1 | 1 | 284 | 1 | 288 | 0.0 | 506 |
| MS.gene80792.t1 | MTR_3g070180 | 30.851 | 282 | 178 | 6 | 10 | 278 | 8 | 285 | 1.31e-31 | 119 |
| MS.gene80792.t1 | MTR_5g081980 | 30.996 | 271 | 170 | 6 | 21 | 278 | 19 | 285 | 2.14e-31 | 119 |
| MS.gene80792.t1 | MTR_5g082010 | 37.162 | 148 | 35 | 4 | 70 | 217 | 5 | 94 | 1.43e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80792.t1 | AT2G39990 | 71.478 | 291 | 75 | 1 | 2 | 284 | 3 | 293 | 9.26e-149 | 418 |
| MS.gene80792.t1 | AT3G11270 | 32.624 | 282 | 170 | 8 | 10 | 278 | 8 | 282 | 5.56e-34 | 125 |
| MS.gene80792.t1 | AT3G11270 | 32.281 | 285 | 170 | 8 | 10 | 278 | 8 | 285 | 1.74e-33 | 124 |
| MS.gene80792.t1 | AT5G05780 | 30.108 | 279 | 181 | 6 | 10 | 278 | 8 | 282 | 5.89e-31 | 117 |
| MS.gene80792.t1 | AT5G05780 | 29.787 | 282 | 181 | 6 | 10 | 278 | 8 | 285 | 1.51e-30 | 116 |
Find 69 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCACAGACCTTATC+TGG | 0.146944 | 5.3:-66404511 | MS.gene80792:CDS |
| AAATGCCAATGAGGTCATTT+TGG | 0.165567 | 5.3:+66401167 | None:intergenic |
| GTTGACCCAGACAACAAAAT+TGG | 0.240414 | 5.3:-66401222 | MS.gene80792:CDS |
| GGTGGGATAGTAACATATTA+TGG | 0.265911 | 5.3:+66403322 | None:intergenic |
| CTTCTCGAGAATAAAATTCA+TGG | 0.333882 | 5.3:+66403127 | None:intergenic |
| AAAATCCCATCTGATATAGA+AGG | 0.343652 | 5.3:-66401324 | MS.gene80792:CDS |
| CCATCCAACTATAACTTCCT+TGG | 0.366694 | 5.3:+66403287 | None:intergenic |
| TGCAGGTATTCAACTGGTCT+TGG | 0.400141 | 5.3:-66403174 | MS.gene80792:intron |
| CATCCAACTATAACTTCCTT+GGG | 0.416516 | 5.3:+66403288 | None:intergenic |
| GTGTCAACAGTCAAATGTAT+TGG | 0.427871 | 5.3:+66403096 | None:intergenic |
| GCTTGTGAATGACAGCTTGC+AGG | 0.436231 | 5.3:-66401139 | MS.gene80792:intron |
| ATTTCGTGCAGGTATTCAAC+TGG | 0.436544 | 5.3:-66403180 | MS.gene80792:intron |
| AGCCTCAATGACACATCTAT+TGG | 0.437864 | 5.3:-66401295 | MS.gene80792:CDS |
| GCACAATGAGTCCGTTGATC+AGG | 0.442467 | 5.3:-66404347 | MS.gene80792:intron |
| TTCCGATGACGCGCTCCGCT+TGG | 0.444809 | 5.3:+66404431 | None:intergenic |
| ACAGTTTCAAGAAATTCCTT+TGG | 0.446019 | 5.3:-66402995 | MS.gene80792:CDS |
| TCAACTGGTCTTGGAGTAAC+CGG | 0.447005 | 5.3:-66403165 | MS.gene80792:CDS |
| AACATCATCAACATATTTGT+AGG | 0.458717 | 5.3:+66401257 | None:intergenic |
| CGGATATCAACGGTTCCGTC+GGG | 0.460154 | 5.3:+66404388 | None:intergenic |
| AATGACACATCTATTGGCCT+TGG | 0.461549 | 5.3:-66401289 | MS.gene80792:CDS |
| CCTTCCCAAAATGACCTCAT+TGG | 0.463208 | 5.3:-66401172 | MS.gene80792:CDS |
| ATGACGCGCTCCGCTTGGTC+AGG | 0.463914 | 5.3:+66404436 | None:intergenic |
| CGCGTCATCGGAACGCTCCT+CGG | 0.471682 | 5.3:-66404421 | MS.gene80792:CDS |
| GTTTCAAACAATTTATCACT+TGG | 0.476789 | 5.3:-66403036 | MS.gene80792:CDS |
| TTGACCCAGACAACAAAATT+GGG | 0.481778 | 5.3:-66401221 | MS.gene80792:CDS |
| CTCGGTTCCGTTCTCCCCGA+CGG | 0.503780 | 5.3:-66404403 | MS.gene80792:CDS |
| CACAAGGACACAGCTCAGCC+TGG | 0.504225 | 5.3:-66400890 | MS.gene80792:CDS |
| TCCATCCCTTCTATATCAGA+TGG | 0.510316 | 5.3:+66401318 | None:intergenic |
| AATTCCTTTGGATCTTCGTA+TGG | 0.511279 | 5.3:-66402983 | MS.gene80792:CDS |
| AATCCCAAGGAAGTTATAGT+TGG | 0.514876 | 5.3:-66403291 | MS.gene80792:CDS |
| TGTCAACAGTCAAATGTATT+GGG | 0.515694 | 5.3:+66403097 | None:intergenic |
| GACCAAGCGGAGCGCGTCAT+CGG | 0.516314 | 5.3:-66404433 | MS.gene80792:CDS |
| AACAGTCAAATGTATTGGGT+TGG | 0.517495 | 5.3:+66403101 | None:intergenic |
| CCCATCTGATATAGAAGGGA+TGG | 0.517833 | 5.3:-66401319 | MS.gene80792:CDS |
| TTCACAGACCTTATCTGGGA+AGG | 0.523217 | 5.3:-66404506 | MS.gene80792:CDS |
| CTTCTTCACAGACCTTATCT+GGG | 0.527844 | 5.3:-66404510 | MS.gene80792:CDS |
| ATGGATTAATGCACTGCCAC+CGG | 0.529881 | 5.3:+66403146 | None:intergenic |
| AACGGTTCCGTCGGGGAGAA+CGG | 0.534492 | 5.3:+66404396 | None:intergenic |
| AGGATGAACCTTCCCAGATA+AGG | 0.554951 | 5.3:+66404498 | None:intergenic |
| CCATCCCTTCTATATCAGAT+GGG | 0.557710 | 5.3:+66401319 | None:intergenic |
| CCAAGGAAGTTATAGTTGGA+TGG | 0.560349 | 5.3:-66403287 | MS.gene80792:intron |
| GCGGATATCAACGGTTCCGT+CGG | 0.569810 | 5.3:+66404387 | None:intergenic |
| CAAATATGTTGATGATGTTG+TGG | 0.577796 | 5.3:-66401253 | MS.gene80792:CDS |
| CACAGGATTTGCAGATGGAG+AGG | 0.582511 | 5.3:-66403076 | MS.gene80792:CDS |
| GTATGAATTGCGGATATCAA+CGG | 0.586004 | 5.3:+66404378 | None:intergenic |
| AAATGTATATCAGATGTTGT+AGG | 0.590500 | 5.3:-66401198 | MS.gene80792:CDS |
| AACGGACTCATTGTGCGGAA+CGG | 0.592689 | 5.3:+66404354 | None:intergenic |
| GTTGACACAGGATTTGCAGA+TGG | 0.595147 | 5.3:-66403081 | MS.gene80792:CDS |
| ATGGTTGAAGCTGAGCGCAT+TGG | 0.598696 | 5.3:-66402964 | MS.gene80792:CDS |
| AAATCCCATCTGATATAGAA+GGG | 0.606690 | 5.3:-66401323 | MS.gene80792:CDS |
| ACAGGATTTGCAGATGGAGA+GGG | 0.622352 | 5.3:-66403075 | MS.gene80792:CDS |
| AAGCTCATCAAATGCCAATG+AGG | 0.623144 | 5.3:+66401158 | None:intergenic |
| TGTCCGTCGTCCTGACCAAG+CGG | 0.631366 | 5.3:-66404446 | MS.gene80792:CDS |
| GCGGAACGGCGTATGAATTG+CGG | 0.635130 | 5.3:+66404368 | None:intergenic |
| AGAGTAAAGGACCTGATCAA+CGG | 0.636781 | 5.3:+66404336 | None:intergenic |
| ATACATTTGACTGTTGACAC+AGG | 0.640476 | 5.3:-66403093 | MS.gene80792:CDS |
| TCAACCATACGAAGATCCAA+AGG | 0.640847 | 5.3:+66402979 | None:intergenic |
| GGCCAATAGATGTGTCATTG+AGG | 0.644097 | 5.3:+66401293 | None:intergenic |
| TATGTTGATGATGTTGTGGA+AGG | 0.648589 | 5.3:-66401249 | MS.gene80792:CDS |
| TGATCAACGGACTCATTGTG+CGG | 0.657332 | 5.3:+66404349 | None:intergenic |
| GCTCCGCTTGGTCAGGACGA+CGG | 0.661779 | 5.3:+66404443 | None:intergenic |
| TTTGTAGGTGTCATCAACCA+AGG | 0.664422 | 5.3:+66401272 | None:intergenic |
| CGTCGGGGAGAACGGAACCG+AGG | 0.682382 | 5.3:+66404404 | None:intergenic |
| GGGATAGTAACATATTATGG+TGG | 0.686225 | 5.3:+66403325 | None:intergenic |
| ATGTTGATGATGTTGTGGAA+GGG | 0.687818 | 5.3:-66401248 | MS.gene80792:CDS |
| CAGATGTTGAAGATAACGAG+AGG | 0.689403 | 5.3:+66404478 | None:intergenic |
| ACTGGTCTTGGAGTAACCGG+TGG | 0.692326 | 5.3:-66403162 | MS.gene80792:CDS |
| GGATATCAACGGTTCCGTCG+GGG | 0.703000 | 5.3:+66404389 | None:intergenic |
| TATATTTATCTAGCATCACA+AGG | 0.712944 | 5.3:-66400906 | MS.gene80792:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTTAATAAATTGTAG+GGG | - | chr5.3:66404331-66404350 | MS.gene80792:intron | 10.0% |
| !! | GAATAAATTTAATAAATTGT+AGG | - | chr5.3:66404329-66404348 | MS.gene80792:intron | 10.0% |
| !!! | CTAACTTTTAAATAAAAATT+TGG | - | chr5.3:66401757-66401776 | MS.gene80792:intron | 10.0% |
| !!! | TCTAATTTAAAATGAAAATT+TGG | - | chr5.3:66401568-66401587 | MS.gene80792:intron | 10.0% |
| !!! | TTTCATTTACTTTTATTAAT+AGG | - | chr5.3:66402032-66402051 | MS.gene80792:intron | 10.0% |
| !! | AAATAAAACTGTATATTTGA+TGG | - | chr5.3:66401859-66401878 | MS.gene80792:intron | 15.0% |
| !! | AAATGGCTTATAAATTATAA+TGG | - | chr5.3:66403957-66403976 | MS.gene80792:intron | 15.0% |
| !! | TGATTATCTATAAATACAAA+AGG | - | chr5.3:66401988-66402007 | MS.gene80792:intron | 15.0% |
| !! | TTAAAGAAAATGTTAAGTTT+GGG | - | chr5.3:66401416-66401435 | MS.gene80792:intron | 15.0% |
| !!! | AATTATGAAAATAGTTCTTT+TGG | - | chr5.3:66404371-66404390 | MS.gene80792:CDS | 15.0% |
| !!! | ATCATCTTTAAAATAAAACA+AGG | + | chr5.3:66403680-66403699 | None:intergenic | 15.0% |
| !!! | CTTGTTTTGTAAATTTTTTT+TGG | - | chr5.3:66402154-66402173 | MS.gene80792:intron | 15.0% |
| !!! | TTCATTTAGTGATTTTTTTA+TGG | - | chr5.3:66402786-66402805 | MS.gene80792:intron | 15.0% |
| !! | AAGAAATATCCTAAAATATG+TGG | + | chr5.3:66403527-66403546 | None:intergenic | 20.0% |
| !! | AGAAATATCCTAAAATATGT+GGG | + | chr5.3:66403526-66403545 | None:intergenic | 20.0% |
| !! | ATTTATGTATCACTTTATCA+TGG | - | chr5.3:66403887-66403906 | MS.gene80792:intron | 20.0% |
| !! | CTTAAAGAAAATGTTAAGTT+TGG | - | chr5.3:66401415-66401434 | MS.gene80792:intron | 20.0% |
| !! | TAAAGAAAATGTTAAGTTTG+GGG | - | chr5.3:66401417-66401436 | MS.gene80792:intron | 20.0% |
| !! | TTAGAATAAAATTAGGTGTT+TGG | - | chr5.3:66403562-66403581 | MS.gene80792:intron | 20.0% |
| !!! | AACTTGATGCATTTTTTAAT+TGG | + | chr5.3:66401716-66401735 | None:intergenic | 20.0% |
| !!! | AGATTTTTAGAAGAAACAAA+TGG | + | chr5.3:66401944-66401963 | None:intergenic | 20.0% |
| !!! | AGTTGCTTTAGAATAAAATT+AGG | - | chr5.3:66403555-66403574 | MS.gene80792:intron | 20.0% |
| !!! | ATTTGAAATGTTAATTTCTC+TGG | + | chr5.3:66401180-66401199 | None:intergenic | 20.0% |
| !!! | CTGTTTTATGTTTTTATCAA+AGG | - | chr5.3:66402495-66402514 | MS.gene80792:intron | 20.0% |
| !!! | TTAAAATGAAAATTTGGTGT+TGG | - | chr5.3:66401574-66401593 | MS.gene80792:intron | 20.0% |
| !!! | TTGCAGGTAATTTTAATTTT+GGG | - | chr5.3:66404276-66404295 | MS.gene80792:intron | 20.0% |
| ! | AAAGAAAATGTTAAGTTTGG+GGG | - | chr5.3:66401418-66401437 | MS.gene80792:intron | 25.0% |
| ! | AAATGTATATCAGATGTTGT+AGG | - | chr5.3:66404201-66404220 | MS.gene80792:intron | 25.0% |
| ! | AACATCATCAACATATTTGT+AGG | + | chr5.3:66404145-66404164 | None:intergenic | 25.0% |
| ! | AACATTATGTACCAATATCA+CGG | + | chr5.3:66401293-66401312 | None:intergenic | 25.0% |
| ! | AACCAAATGTAATTTCAGAA+AGG | + | chr5.3:66401102-66401121 | None:intergenic | 25.0% |
| ! | ATTTACAGAAAGAATGATAC+TGG | - | chr5.3:66402863-66402882 | MS.gene80792:intron | 25.0% |
| ! | CAATAAATGTTCTTCAACAA+TGG | + | chr5.3:66401144-66401163 | None:intergenic | 25.0% |
| ! | CATGAAAAGTAAAACTTTGA+TGG | - | chr5.3:66403388-66403407 | MS.gene80792:intron | 25.0% |
| ! | CTTTATAGAAGAAATGTCTT+GGG | - | chr5.3:66403752-66403771 | MS.gene80792:intron | 25.0% |
| ! | GTTTCAAACAATTTATCACT+TGG | - | chr5.3:66402363-66402382 | MS.gene80792:intron | 25.0% |
| ! | TATATTTATCTAGCATCACA+AGG | - | chr5.3:66404493-66404512 | MS.gene80792:CDS | 25.0% |
| ! | TATCCATATACTTTGCTTAA+AGG | - | chr5.3:66402975-66402994 | MS.gene80792:CDS | 25.0% |
| !! | AAAACTGTATATTTGATGGT+TGG | - | chr5.3:66401863-66401882 | MS.gene80792:intron | 25.0% |
| !! | AATGTAGATTAATGCGATTT+TGG | - | chr5.3:66401445-66401464 | MS.gene80792:intron | 25.0% |
| !! | ATAGCTTTTACCAAAAAAAG+TGG | + | chr5.3:66401658-66401677 | None:intergenic | 25.0% |
| !! | ATTGATTGTTTGTTAACTTC+TGG | - | chr5.3:66404014-66404033 | MS.gene80792:intron | 25.0% |
| !! | CTTTTATTAATAGGTTGCTT+TGG | - | chr5.3:66402041-66402060 | MS.gene80792:intron | 25.0% |
| !! | GTAGATTGATAACATATATC+TGG | - | chr5.3:66401788-66401807 | MS.gene80792:intron | 25.0% |
| !! | TCTTTTTGTATTTCTTCACT+TGG | - | chr5.3:66403028-66403047 | MS.gene80792:CDS | 25.0% |
| !! | TTAAAGAACACATTTTCTCA+GGG | - | chr5.3:66404419-66404438 | MS.gene80792:CDS | 25.0% |
| !! | TTTTTCCTGATTGATGTATT+AGG | - | chr5.3:66402663-66402682 | MS.gene80792:intron | 25.0% |
| !! | TTTTTGATGAATGCAATGTT+TGG | - | chr5.3:66403469-66403488 | MS.gene80792:intron | 25.0% |
| !!! | CTTGCAGGTAATTTTAATTT+TGG | - | chr5.3:66404275-66404294 | MS.gene80792:intron | 25.0% |
| !!! | GTTTGAAACATATGCTTTTA+TGG | + | chr5.3:66402352-66402371 | None:intergenic | 25.0% |
| !!! | TGCAGGTAATTTTAATTTTG+GGG | - | chr5.3:66404277-66404296 | MS.gene80792:intron | 25.0% |
| !!! | TTCCTTTCTGAAATTACATT+TGG | - | chr5.3:66401097-66401116 | MS.gene80792:intron | 25.0% |
| !!! | TTGATGCATTTTTTAATTGG+TGG | + | chr5.3:66401713-66401732 | None:intergenic | 25.0% |
| AAAATCCCATCTGATATAGA+AGG | - | chr5.3:66404075-66404094 | MS.gene80792:intron | 30.0% | |
| AAATCCCATCTGATATAGAA+GGG | - | chr5.3:66404076-66404095 | MS.gene80792:intron | 30.0% | |
| AAGACAAAAACAATGACACT+TGG | + | chr5.3:66403167-66403186 | None:intergenic | 30.0% | |
| ACAGTTTCAAGAAATTCCTT+TGG | - | chr5.3:66402404-66402423 | MS.gene80792:intron | 30.0% | |
| AGACCTTTAAGCAAAGTATA+TGG | + | chr5.3:66402981-66403000 | None:intergenic | 30.0% | |
| ATCACACATCGATCTATTAA+AGG | + | chr5.3:66402615-66402634 | None:intergenic | 30.0% | |
| ATCGTCAATGTTAAGTTTGA+GGG | - | chr5.3:66401617-66401636 | MS.gene80792:intron | 30.0% | |
| ATGAATCTGAGTAACATGTT+TGG | - | chr5.3:66403422-66403441 | MS.gene80792:intron | 30.0% | |
| ATGCAATGTTTGGTACAATT+TGG | - | chr5.3:66403479-66403498 | MS.gene80792:intron | 30.0% | |
| ATGTATCTATTAGTTGAGAG+TGG | - | chr5.3:66403786-66403805 | MS.gene80792:intron | 30.0% | |
| CAGATACTTTACTTAAATCC+AGG | - | chr5.3:66402731-66402750 | MS.gene80792:intron | 30.0% | |
| CATAACATAACAAGCTCTTA+CGG | + | chr5.3:66404397-66404416 | None:intergenic | 30.0% | |
| CCAAGACATTTCTTCTATAA+AGG | + | chr5.3:66403754-66403773 | None:intergenic | 30.0% | |
| CCTTTATAGAAGAAATGTCT+TGG | - | chr5.3:66403751-66403770 | MS.gene80792:intron | 30.0% | |
| CTTCAGATTATCAACTGTAA+AGG | + | chr5.3:66404040-66404059 | None:intergenic | 30.0% | |
| CTTCTCGAGAATAAAATTCA+TGG | + | chr5.3:66402275-66402294 | None:intergenic | 30.0% | |
| GTAAAACTCACAAATAGAGT+TGG | + | chr5.3:66401898-66401917 | None:intergenic | 30.0% | |
| GTTGGATTAATCAAAGATTG+TGG | + | chr5.3:66401372-66401391 | None:intergenic | 30.0% | |
| TACATAATGTTGTCAAATGG+TGG | - | chr5.3:66401302-66401321 | MS.gene80792:CDS | 30.0% | |
| TATGTCCTAATACATCAATC+AGG | + | chr5.3:66402671-66402690 | None:intergenic | 30.0% | |
| TCTTTGATTAATCCAACAGA+TGG | - | chr5.3:66401375-66401394 | MS.gene80792:intron | 30.0% | |
| TGAATCTGAGTAACATGTTT+GGG | - | chr5.3:66403423-66403442 | MS.gene80792:intron | 30.0% | |
| TGGTACATAATGTTGTCAAA+TGG | - | chr5.3:66401299-66401318 | MS.gene80792:CDS | 30.0% | |
| TGTCAACAGTCAAATGTATT+GGG | + | chr5.3:66402305-66402324 | None:intergenic | 30.0% | |
| TGTTAAGTTTGAGGGAATTA+TGG | - | chr5.3:66401625-66401644 | MS.gene80792:intron | 30.0% | |
| TTATACTGACACAACACTAA+TGG | + | chr5.3:66403923-66403942 | None:intergenic | 30.0% | |
| TTGCTTAAAGGTCTAAATCT+AGG | - | chr5.3:66402987-66403006 | MS.gene80792:CDS | 30.0% | |
| ! | ATGTTAATTTCTCTGGCTTA+AGG | + | chr5.3:66401173-66401192 | None:intergenic | 30.0% |
| ! | ATTTTCCTTTCCTTGTGAAA+TGG | - | chr5.3:66403264-66403283 | MS.gene80792:intron | 30.0% |
| ! | CTGGATTTAAGTAAAGTATC+TGG | + | chr5.3:66402733-66402752 | None:intergenic | 30.0% |
| ! | GTATAAGTCCCACATATTTT+AGG | - | chr5.3:66403515-66403534 | MS.gene80792:intron | 30.0% |
| ! | GTTAAAGAACACATTTTCTC+AGG | - | chr5.3:66404418-66404437 | MS.gene80792:CDS | 30.0% |
| ! | TAGCTAGTGTCATTGTTATT+AGG | - | chr5.3:66402911-66402930 | MS.gene80792:intron | 30.0% |
| ! | TTGTTATTGTTCCGTGATAT+TGG | - | chr5.3:66401279-66401298 | MS.gene80792:CDS | 30.0% |
| ! | TTTTCCTTTCCTTGTGAAAT+GGG | - | chr5.3:66403265-66403284 | MS.gene80792:intron | 30.0% |
| ! | TTTTGTATTTCTTCACTTGG+TGG | - | chr5.3:66403031-66403050 | MS.gene80792:CDS | 30.0% |
| !! | AATGAGTTTTTATTTCGTGC+AGG | - | chr5.3:66402208-66402227 | MS.gene80792:intron | 30.0% |
| !! | ATTTCCCAATTTTGTTGTCT+GGG | + | chr5.3:66404185-66404204 | None:intergenic | 30.0% |
| !! | CAAATATGTTGATGATGTTG+TGG | - | chr5.3:66404146-66404165 | MS.gene80792:intron | 30.0% |
| !! | TAATTTGTAGCGCTTTGAAA+TGG | - | chr5.3:66403940-66403959 | MS.gene80792:intron | 30.0% |
| AACAGTCAAATGTATTGGGT+TGG | + | chr5.3:66402301-66402320 | None:intergenic | 35.0% | |
| AATCCCAAGGAAGTTATAGT+TGG | - | chr5.3:66402108-66402127 | MS.gene80792:intron | 35.0% | |
| AATTCCTTTGGATCTTCGTA+TGG | - | chr5.3:66402416-66402435 | MS.gene80792:intron | 35.0% | |
| ATACATTTGACTGTTGACAC+AGG | - | chr5.3:66402306-66402325 | MS.gene80792:intron | 35.0% | |
| ATCTGTGTCTCGTTTGTATT+TGG | - | chr5.3:66403226-66403245 | MS.gene80792:intron | 35.0% | |
| ATTTCAGAAAGGAATGCATG+TGG | + | chr5.3:66401091-66401110 | None:intergenic | 35.0% | |
| ATTTGAATTAGCAGCGAGTA+TGG | + | chr5.3:66401523-66401542 | None:intergenic | 35.0% | |
| CAAAACAAGCTTCAAAGAAC+TGG | + | chr5.3:66402143-66402162 | None:intergenic | 35.0% | |
| CACAAAGTGTATTTGCAATC+AGG | - | chr5.3:66403328-66403347 | MS.gene80792:CDS | 35.0% | |
| CATCCAACTATAACTTCCTT+GGG | + | chr5.3:66402114-66402133 | None:intergenic | 35.0% | |
| CATCGTCAATGTTAAGTTTG+AGG | - | chr5.3:66401616-66401635 | MS.gene80792:intron | 35.0% | |
| GAAGCAATGTTGTTGAATAG+CGG | - | chr5.3:66401211-66401230 | MS.gene80792:CDS | 35.0% | |
| GGCGAGTTTAGAAAAATCAT+GGG | + | chr5.3:66401692-66401711 | None:intergenic | 35.0% | |
| GGGATAGTAACATATTATGG+TGG | + | chr5.3:66402077-66402096 | None:intergenic | 35.0% | |
| GGTCCAGCATTAAAAAAGTA+AGG | + | chr5.3:66401923-66401942 | None:intergenic | 35.0% | |
| GGTGGGATAGTAACATATTA+TGG | + | chr5.3:66402080-66402099 | None:intergenic | 35.0% | |
| GTATGAATTGCGGATATCAA+CGG | + | chr5.3:66401024-66401043 | None:intergenic | 35.0% | |
| GTCTTACTCTTAAAACCATC+TGG | + | chr5.3:66403591-66403610 | None:intergenic | 35.0% | |
| GTGTCAACAGTCAAATGTAT+TGG | + | chr5.3:66402306-66402325 | None:intergenic | 35.0% | |
| GTGTGATATTGTACTAGGTT+AGG | - | chr5.3:66402628-66402647 | MS.gene80792:intron | 35.0% | |
| TACAGAAAGAATGATACCTG+AGG | - | chr5.3:66403121-66403140 | MS.gene80792:CDS | 35.0% | |
| TCGATGTGTGATATTGTACT+AGG | - | chr5.3:66402623-66402642 | MS.gene80792:intron | 35.0% | |
| TCGTTTGTATTTGGGAAAAC+TGG | - | chr5.3:66403235-66403254 | MS.gene80792:intron | 35.0% | |
| TCTGTGTCTCGTTTGTATTT+GGG | - | chr5.3:66403227-66403246 | MS.gene80792:intron | 35.0% | |
| TGCTTGCTTTCATCAATTCA+TGG | - | chr5.3:66402557-66402576 | MS.gene80792:intron | 35.0% | |
| TGGCGAGTTTAGAAAAATCA+TGG | + | chr5.3:66401693-66401712 | None:intergenic | 35.0% | |
| TTACTCTTAAAACCATCTGG+AGG | + | chr5.3:66403588-66403607 | None:intergenic | 35.0% | |
| TTGACCCAGACAACAAAATT+GGG | - | chr5.3:66404178-66404197 | MS.gene80792:intron | 35.0% | |
| TTGATTAATCCAACAGATGG+CGG | - | chr5.3:66401378-66401397 | MS.gene80792:intron | 35.0% | |
| TTGTTGAATAGCGGCTAAAT+CGG | - | chr5.3:66401220-66401239 | MS.gene80792:CDS | 35.0% | |
| ! | AAATGCCAATGAGGTCATTT+TGG | + | chr5.3:66404235-66404254 | None:intergenic | 35.0% |
| ! | ACACATTTTCTCAGGGTTTT+TGG | - | chr5.3:66404426-66404445 | MS.gene80792:CDS | 35.0% |
| ! | CATTGGATGTACGTATTGAT+TGG | - | chr5.3:66402452-66402471 | MS.gene80792:intron | 35.0% |
| !! | AATGCCAATGAGGTCATTTT+GGG | + | chr5.3:66404234-66404253 | None:intergenic | 35.0% |
| !! | ATGTTGATGATGTTGTGGAA+GGG | - | chr5.3:66404151-66404170 | MS.gene80792:intron | 35.0% |
| !! | CATTTCCCAATTTTGTTGTC+TGG | + | chr5.3:66404186-66404205 | None:intergenic | 35.0% |
| !! | CTCTTTTAAAGGGGTTTTGA+GGG | - | chr5.3:66403618-66403637 | MS.gene80792:intron | 35.0% |
| !! | TATGTTGATGATGTTGTGGA+AGG | - | chr5.3:66404150-66404169 | MS.gene80792:intron | 35.0% |
| !! | TCTCTTTTAAAGGGGTTTTG+AGG | - | chr5.3:66403617-66403636 | MS.gene80792:intron | 35.0% |
| !! | TGAAAATTTGGTGTTGGATG+TGG | - | chr5.3:66401580-66401599 | MS.gene80792:intron | 35.0% |
| !! | TTGGTACAATTTGGTGCATT+GGG | - | chr5.3:66403488-66403507 | MS.gene80792:intron | 35.0% |
| !! | TTTGGTACAATTTGGTGCAT+TGG | - | chr5.3:66403487-66403506 | MS.gene80792:intron | 35.0% |
| !!! | ATTTTGGGGTTATGTTGTAG+TGG | - | chr5.3:66404291-66404310 | MS.gene80792:intron | 35.0% |
| !!! | CAGCCTTACTTTTTTAATGC+TGG | - | chr5.3:66401917-66401936 | MS.gene80792:intron | 35.0% |
| !!! | CTTCACTTGGTGGTTTTTTA+TGG | - | chr5.3:66403041-66403060 | MS.gene80792:CDS | 35.0% |
| !!! | TCAGTTTTTGGTCATGATCA+AGG | + | chr5.3:66403207-66403226 | None:intergenic | 35.0% |
| AAGCTCATCAAATGCCAATG+AGG | + | chr5.3:66404244-66404263 | None:intergenic | 40.0% | |
| AAGTCCCATTTCACAAGGAA+AGG | + | chr5.3:66403272-66403291 | None:intergenic | 40.0% | |
| AATGCATGTGGAGAGAGTAA+AGG | + | chr5.3:66401079-66401098 | None:intergenic | 40.0% | |
| ACACAGAAGAGAATACAGAG+AGG | + | chr5.3:66403718-66403737 | None:intergenic | 40.0% | |
| AGAGTAAAGGACCTGATCAA+CGG | + | chr5.3:66401066-66401085 | None:intergenic | 40.0% | |
| AGCCTCAATGACACATCTAT+TGG | - | chr5.3:66404104-66404123 | MS.gene80792:intron | 40.0% | |
| ATTGTGAATGACATTGCCTC+AGG | + | chr5.3:66403140-66403159 | None:intergenic | 40.0% | |
| ATTTCGTGCAGGTATTCAAC+TGG | - | chr5.3:66402219-66402238 | MS.gene80792:intron | 40.0% | |
| CAGAAAGAATGATACTGGAC+TGG | - | chr5.3:66402868-66402887 | MS.gene80792:intron | 40.0% | |
| CAGATGTTGAAGATAACGAG+AGG | + | chr5.3:66400924-66400943 | None:intergenic | 40.0% | |
| CATATATCTGGTGTAGCATG+TGG | - | chr5.3:66401800-66401819 | MS.gene80792:intron | 40.0% | |
| CCAAAATATTCAACCTGCAG+CGG | + | chr5.3:66403305-66403324 | None:intergenic | 40.0% | |
| CCAAGGAAGTTATAGTTGGA+TGG | - | chr5.3:66402112-66402131 | MS.gene80792:intron | 40.0% | |
| CCATCCAACTATAACTTCCT+TGG | + | chr5.3:66402115-66402134 | None:intergenic | 40.0% | |
| CCATCCCTTCTATATCAGAT+GGG | + | chr5.3:66404083-66404102 | None:intergenic | 40.0% | |
| CTTCTTCACAGACCTTATCT+GGG | - | chr5.3:66400889-66400908 | MS.gene80792:CDS | 40.0% | |
| GAAGAGAATACAGAGAGGAA+AGG | + | chr5.3:66403713-66403732 | None:intergenic | 40.0% | |
| GTTATTAGGACAGAGTGACT+TGG | - | chr5.3:66402925-66402944 | MS.gene80792:intron | 40.0% | |
| GTTGACCCAGACAACAAAAT+TGG | - | chr5.3:66404177-66404196 | MS.gene80792:intron | 40.0% | |
| TCAACCATACGAAGATCCAA+AGG | + | chr5.3:66402423-66402442 | None:intergenic | 40.0% | |
| TCCATCCCTTCTATATCAGA+TGG | + | chr5.3:66404084-66404103 | None:intergenic | 40.0% | |
| TCTTCTTCACAGACCTTATC+TGG | - | chr5.3:66400888-66400907 | MS.gene80792:CDS | 40.0% | |
| TTTCCTTGTGAAATGGGACT+TGG | - | chr5.3:66403271-66403290 | MS.gene80792:intron | 40.0% | |
| TTTGTTAAAGCTCCAGAGTG+TGG | + | chr5.3:66401477-66401496 | None:intergenic | 40.0% | |
| ! | AAAGAATGATACTGGACTGG+AGG | - | chr5.3:66402871-66402890 | MS.gene80792:intron | 40.0% |
| ! | AACATGTTTGGGTTTGTCTC+AGG | - | chr5.3:66403434-66403453 | MS.gene80792:intron | 40.0% |
| ! | AATGACACATCTATTGGCCT+TGG | - | chr5.3:66404110-66404129 | MS.gene80792:intron | 40.0% |
| ! | ACGAGACACAGATCAGTTTT+TGG | + | chr5.3:66403219-66403238 | None:intergenic | 40.0% |
| ! | CTGGAGCTTTAACAAACTTG+CGG | - | chr5.3:66401481-66401500 | MS.gene80792:intron | 40.0% |
| ! | TTTGTAGGTGTCATCAACCA+AGG | + | chr5.3:66404130-66404149 | None:intergenic | 40.0% |
| !! | CAATGAGGTCATTTTGGGAA+GGG | + | chr5.3:66404229-66404248 | None:intergenic | 40.0% |
| !! | CAGTGTTCAATTTTTCAGCC+AGG | + | chr5.3:66404530-66404549 | None:intergenic | 40.0% |
| !! | CTTCCTTGGGATTCACTTTT+TGG | + | chr5.3:66402101-66402120 | None:intergenic | 40.0% |
| !! | TTTTCAGGATCACTTGCTCA+TGG | - | chr5.3:66404470-66404489 | MS.gene80792:CDS | 40.0% |
| !!! | AAGAGTGTCTCATGGTTTTC+AGG | - | chr5.3:66404455-66404474 | MS.gene80792:CDS | 40.0% |
| !!! | CTTGGGATTCACTTTTTGGT+GGG | + | chr5.3:66402097-66402116 | None:intergenic | 40.0% |
| !!! | TGGCAGAGTACCACTTTTTT+TGG | - | chr5.3:66401645-66401664 | MS.gene80792:intron | 40.0% |
| !!! | TTAAAGGGGTTTTGAGGGAT+TGG | - | chr5.3:66403623-66403642 | MS.gene80792:intron | 40.0% |
| AACCATGAGACACTCTTGTC+AGG | + | chr5.3:66404452-66404471 | None:intergenic | 45.0% | |
| ACAGGATTTGCAGATGGAGA+GGG | - | chr5.3:66402324-66402343 | MS.gene80792:intron | 45.0% | |
| AGGATGAACCTTCCCAGATA+AGG | + | chr5.3:66400904-66400923 | None:intergenic | 45.0% | |
| CCACCAAAAAGTGAATCCCA+AGG | - | chr5.3:66402095-66402114 | MS.gene80792:intron | 45.0% | |
| CCCATCTGATATAGAAGGGA+TGG | - | chr5.3:66404080-66404099 | MS.gene80792:intron | 45.0% | |
| CCTTCCCAAAATGACCTCAT+TGG | - | chr5.3:66404227-66404246 | MS.gene80792:intron | 45.0% | |
| GAAATGTCTTGGGTCTACTG+TGG | - | chr5.3:66403762-66403781 | MS.gene80792:intron | 45.0% | |
| GATCCAAGTCCCATTTCACA+AGG | + | chr5.3:66403277-66403296 | None:intergenic | 45.0% | |
| GTTGACACAGGATTTGCAGA+TGG | - | chr5.3:66402318-66402337 | MS.gene80792:intron | 45.0% | |
| TATACAGTTCCGCCATCTGT+TGG | + | chr5.3:66401390-66401409 | None:intergenic | 45.0% | |
| TTCACAGACCTTATCTGGGA+AGG | - | chr5.3:66400893-66400912 | MS.gene80792:CDS | 45.0% | |
| ! | ATGGATTAATGCACTGCCAC+CGG | + | chr5.3:66402256-66402275 | None:intergenic | 45.0% |
| ! | GGCCAATAGATGTGTCATTG+AGG | + | chr5.3:66404109-66404128 | None:intergenic | 45.0% |
| ! | TGATCAACGGACTCATTGTG+CGG | + | chr5.3:66401053-66401072 | None:intergenic | 45.0% |
| ! | TGATGATGCAAAAGAGAGCC+TGG | + | chr5.3:66402752-66402771 | None:intergenic | 45.0% |
| ! | TGCAGGTATTCAACTGGTCT+TGG | - | chr5.3:66402225-66402244 | MS.gene80792:intron | 45.0% |
| ! | TTTTGGCAAAAGCCACACTC+TGG | - | chr5.3:66401462-66401481 | MS.gene80792:intron | 45.0% |
| !! | CCAATGAGGTCATTTTGGGA+AGG | + | chr5.3:66404230-66404249 | None:intergenic | 45.0% |
| !! | CCGCTGCAGGTTGAATATTT+TGG | - | chr5.3:66403302-66403321 | MS.gene80792:CDS | 45.0% |
| !! | GTACAATTTGGTGCATTGGG+TGG | - | chr5.3:66403491-66403510 | MS.gene80792:intron | 45.0% |
| !! | TCAACTGGTCTTGGAGTAAC+CGG | - | chr5.3:66402234-66402253 | MS.gene80792:intron | 45.0% |
| !!! | CCTTGGGATTCACTTTTTGG+TGG | + | chr5.3:66402098-66402117 | None:intergenic | 45.0% |
| !!! | GGTTTTAAGAGTAAGACGCG+CGG | - | chr5.3:66403594-66403613 | MS.gene80792:intron | 45.0% |
| !! | AATAAATTTAATAAATTGTA+GGG | - | chr5.3:66404330-66404349 | MS.gene80792:intron | 5.0% |
| AATATTCAACCTGCAGCGGC+AGG | + | chr5.3:66403301-66403320 | None:intergenic | 50.0% | |
| ATGGTTGAAGCTGAGCGCAT+TGG | - | chr5.3:66402435-66402454 | MS.gene80792:intron | 50.0% | |
| CACAGGATTTGCAGATGGAG+AGG | - | chr5.3:66402323-66402342 | MS.gene80792:intron | 50.0% | |
| GCACAATGAGTCCGTTGATC+AGG | - | chr5.3:66401052-66401071 | MS.gene80792:intron | 50.0% | |
| GCTTGTGAATGACAGCTTGC+AGG | - | chr5.3:66404260-66404279 | MS.gene80792:intron | 50.0% | |
| TTAGGTGTTTGGCCTCCAGA+TGG | - | chr5.3:66403573-66403592 | MS.gene80792:intron | 50.0% | |
| ! | AACGGACTCATTGTGCGGAA+CGG | + | chr5.3:66401048-66401067 | None:intergenic | 50.0% |
| ! | AGACGCGCGGTCTCTTTTAA+AGG | - | chr5.3:66403607-66403626 | MS.gene80792:intron | 50.0% |
| ! | GACGCGCGGTCTCTTTTAAA+GGG | - | chr5.3:66403608-66403627 | MS.gene80792:intron | 50.0% |
| !! | ACGCGCGGTCTCTTTTAAAG+GGG | - | chr5.3:66403609-66403628 | MS.gene80792:intron | 50.0% |
| CGGATATCAACGGTTCCGTC+GGG | + | chr5.3:66401014-66401033 | None:intergenic | 55.0% | |
| GCGGAACGGCGTATGAATTG+CGG | + | chr5.3:66401034-66401053 | None:intergenic | 55.0% | |
| GCGGATATCAACGGTTCCGT+CGG | + | chr5.3:66401015-66401034 | None:intergenic | 55.0% | |
| GGATATCAACGGTTCCGTCG+GGG | + | chr5.3:66401013-66401032 | None:intergenic | 55.0% | |
| !! | ACTGGTCTTGGAGTAACCGG+TGG | - | chr5.3:66402237-66402256 | MS.gene80792:intron | 55.0% |
| !! | GGCCTGACAAGAGTGTCTCA+TGG | - | chr5.3:66404447-66404466 | MS.gene80792:CDS | 55.0% |
| AACGGTTCCGTCGGGGAGAA+CGG | + | chr5.3:66401006-66401025 | None:intergenic | 60.0% | |
| CACAAGGACACAGCTCAGCC+TGG | - | chr5.3:66404509-66404528 | MS.gene80792:CDS | 60.0% | |
| TGTCCGTCGTCCTGACCAAG+CGG | - | chr5.3:66400953-66400972 | MS.gene80792:intron | 60.0% | |
| ATGACGCGCTCCGCTTGGTC+AGG | + | chr5.3:66400966-66400985 | None:intergenic | 65.0% | |
| CGCGTCATCGGAACGCTCCT+CGG | - | chr5.3:66400978-66400997 | MS.gene80792:intron | 65.0% | |
| CTCGGTTCCGTTCTCCCCGA+CGG | - | chr5.3:66400996-66401015 | MS.gene80792:intron | 65.0% | |
| CTTGGATCACCTGCCGCTGC+AGG | - | chr5.3:66403289-66403308 | MS.gene80792:CDS | 65.0% | |
| GACCAAGCGGAGCGCGTCAT+CGG | - | chr5.3:66400966-66400985 | MS.gene80792:intron | 65.0% | |
| GCTCCGCTTGGTCAGGACGA+CGG | + | chr5.3:66400959-66400978 | None:intergenic | 65.0% | |
| TTCCGATGACGCGCTCCGCT+TGG | + | chr5.3:66400971-66400990 | None:intergenic | 65.0% | |
| CGTCGGGGAGAACGGAACCG+AGG | + | chr5.3:66400998-66401017 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66400855 | 66404566 | 66400855 | ID=MS.gene80792 |
| chr5.3 | mRNA | 66400855 | 66404566 | 66400855 | ID=MS.gene80792.t1;Parent=MS.gene80792 |
| chr5.3 | exon | 66404348 | 66404566 | 66404348 | ID=MS.gene80792.t1.exon1;Parent=MS.gene80792.t1 |
| chr5.3 | CDS | 66404348 | 66404566 | 66404348 | ID=cds.MS.gene80792.t1;Parent=MS.gene80792.t1 |
| chr5.3 | exon | 66403288 | 66403367 | 66403288 | ID=MS.gene80792.t1.exon2;Parent=MS.gene80792.t1 |
| chr5.3 | CDS | 66403288 | 66403367 | 66403288 | ID=cds.MS.gene80792.t1;Parent=MS.gene80792.t1 |
| chr5.3 | exon | 66402962 | 66403191 | 66402962 | ID=MS.gene80792.t1.exon3;Parent=MS.gene80792.t1 |
| chr5.3 | CDS | 66402962 | 66403191 | 66402962 | ID=cds.MS.gene80792.t1;Parent=MS.gene80792.t1 |
| chr5.3 | exon | 66401140 | 66401375 | 66401140 | ID=MS.gene80792.t1.exon4;Parent=MS.gene80792.t1 |
| chr5.3 | CDS | 66401140 | 66401375 | 66401140 | ID=cds.MS.gene80792.t1;Parent=MS.gene80792.t1 |
| chr5.3 | exon | 66400855 | 66400944 | 66400855 | ID=MS.gene80792.t1.exon5;Parent=MS.gene80792.t1 |
| chr5.3 | CDS | 66400855 | 66400944 | 66400855 | ID=cds.MS.gene80792.t1;Parent=MS.gene80792.t1 |
| Gene Sequence |
| Protein sequence |
