AlfalfaGEDB | MS.gene81401

M. sativa cultivar XinJiangDaYe / MS.gene81401

KEGG: K08867
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81401.t1	XP_003617691.1	100	300	0	0	1	300	1	300	2.70E-170	607.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81401.t1	Q6ICW6	81.3	284	53	0	6	289	10	293	2.3e-138	493.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81401.t1	G7K4D4	100.0	300	0	0	1	300	1	300	1.9e-170	607.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04920	MS.gene81401	0.80079	1.22E-48	-1.69E-46
MS.gene049283	MS.gene81401	0.820533	6.52E-53	-1.69E-46
MS.gene051699	MS.gene81401	0.816262	6.06E-52	-1.69E-46
MS.gene051959	MS.gene81401	0.817913	2.58E-52	-1.69E-46
MS.gene051960	MS.gene81401	0.817334	3.48E-52	-1.69E-46
MS.gene052016	MS.gene81401	0.802355	5.84E-49	-1.69E-46
MS.gene052040	MS.gene81401	0.83004	3.67E-55	-1.69E-46
MS.gene054892	MS.gene81401	0.824437	8.08E-54	-1.69E-46
MS.gene054893	MS.gene81401	0.834533	2.84E-56	-1.69E-46
MS.gene055150	MS.gene81401	0.822235	2.64E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81401.t1	MTR_5g094390	100.000	300	0	0	1	300	1	300	0.0	625
MS.gene81401.t1	MTR_3g056025	80.333	300	56	1	2	301	1	297	0.0	518
MS.gene81401.t1	MTR_7g029020	81.940	299	53	1	2	299	1	299	0.0	516
MS.gene81401.t1	MTR_3g056010	80.743	296	57	0	2	297	1	296	0.0	515
MS.gene81401.t1	MTR_3g099940	79.461	297	58	2	2	297	1	295	5.32e-178	493
MS.gene81401.t1	MTR_5g097530	74.315	292	72	1	2	293	1	289	1.05e-168	469
MS.gene81401.t1	MTR_0283s0050	74.349	269	66	1	2	270	1	266	1.56e-155	435
MS.gene81401.t1	MTR_5g094390	100.000	170	0	0	1	170	1	170	4.14e-127	361
MS.gene81401.t1	MTR_7g114680	62.191	283	104	2	11	293	8	287	6.91e-126	376
MS.gene81401.t1	MTR_3g076650	62.676	284	106	0	2	285	1	284	2.64e-123	365

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81401.t1	AT5G55560	81.338	284	53	0	6	289	10	293	0.0	503
MS.gene81401.t1	AT3G48260	64.706	272	94	2	15	285	10	280	9.44e-129	376
MS.gene81401.t1	AT3G04910	62.909	275	101	1	11	285	8	281	7.73e-123	367
MS.gene81401.t1	AT3G18750	63.670	267	96	1	19	285	20	285	9.78e-123	363
MS.gene81401.t1	AT3G18750	63.670	267	96	1	19	285	20	285	9.78e-123	363
MS.gene81401.t1	AT3G18750	63.670	267	96	1	19	285	20	285	9.78e-123	363
MS.gene81401.t1	AT3G22420	59.783	276	110	1	12	287	9	283	8.16e-122	360
MS.gene81401.t1	AT3G22420	59.783	276	110	1	12	287	9	283	1.88e-121	360
MS.gene81401.t1	AT3G22420	59.783	276	110	1	12	287	80	354	5.47e-121	360
MS.gene81401.t1	AT5G28080	59.636	275	110	1	11	285	9	282	7.13e-121	355

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Find 68 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCCTCGGAGTCTTTGT+CGG	0.491821	5.2:+79673264	None:intergenic
AAGAAGGAATTGAGGTAGCA+TGG	0.534488	5.2:-79673150	MS.gene81401:CDS
AAGACCTGCTGCAATGAACA+AGG	0.608751	5.2:-79671894	MS.gene81401:CDS
AATTCTGGAGCCATAAACTC+TGG	0.591893	5.2:+79672052	None:intergenic
ACAGGTTAAGATTGGTGACT+TGG	0.470755	5.2:-79672128	MS.gene81401:intron
ACATAGACATGTTTCTATGA+AGG	0.539017	5.2:-79672930	MS.gene81401:CDS
ACATTGTCACACTCACTATA+AGG	0.367348	5.2:+79671950	None:intergenic
ACCATACCGACCAGTTGGAT+CGG	0.574321	5.2:+79673234	None:intergenic
ACCGATCCAACTGGTCGGTA+TGG	0.495805	5.2:-79673235	MS.gene81401:CDS
AGAAACTTTCTTGTATATTT+TGG	0.138144	5.2:+79671925	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGGAATGGAAAATTACC+TGG	+	chr5.2:79672844-79672863	None:intergenic	30.0%
AATTGTTACTAACGCCTTTA+TGG	+	chr5.2:79673462-79673481	None:intergenic	30.0%
AGAAATTTCTTAGCTTCACT+TGG	+	chr5.2:79672508-79672527	None:intergenic	30.0%
CTATTTGATACCAACACTTT+AGG	-	chr5.2:79673080-79673099	MS.gene81401:CDS	30.0%
GACTGAAAGTAAAACAGAAT+TGG	+	chr5.2:79672861-79672880	None:intergenic	30.0%
TCAAATTCATTACACGTATG+TGG	+	chr5.2:79673434-79673453	None:intergenic	30.0%
TGGTATGTGTGTATTAGAAA+TGG	-	chr5.2:79673643-79673662	MS.gene81401:intron	30.0%
TGTATTAGAAATGGTGACAT+TGG	-	chr5.2:79673652-79673671	MS.gene81401:intron	30.0%
ACATTGTCACACTCACTATA+AGG	+	chr5.2:79673683-79673702	None:intergenic	35.0%
ACTAGTAACACCTAAAAGCA+AGG	+	chr5.2:79671955-79671974	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	79671748	79673904	79671748	ID=MS.gene81401
chr5.2	mRNA	79671748	79673904	79671748	ID=MS.gene81401.t1;Parent=MS.gene81401
chr5.2	exon	79673902	79673904	79673902	ID=MS.gene81401.t1.exon1;Parent=MS.gene81401.t1
chr5.2	CDS	79673902	79673904	79673902	ID=cds.MS.gene81401.t1;Parent=MS.gene81401.t1
chr5.2	exon	79672808	79673311	79672808	ID=MS.gene81401.t1.exon2;Parent=MS.gene81401.t1
chr5.2	CDS	79672808	79673311	79672808	ID=cds.MS.gene81401.t1;Parent=MS.gene81401.t1
chr5.2	exon	79671748	79672146	79671748	ID=MS.gene81401.t1.exon3;Parent=MS.gene81401.t1
chr5.2	CDS	79671748	79672146	79671748	ID=cds.MS.gene81401.t1;Parent=MS.gene81401.t1

Gene Sequence

>MS.gene81401

ATGGTAATAATCATCTTCATCTAGCTCCATTTTTTTTTCATTATGTTCTATCATAATTTTTTTGTTAATTGTCTCAAATATTCACATAATTCCATTAAATTTTCAAGTCTTTTTTTGCTTTTAGGTGTTACTTAATTACTTAATAACTTAATTATTCAGTTTCATAATCTTTGGTTCTGAATATTTATTATATTATAAGTTACTCCTTGCTTTTAGGTGTTACTAGTACATCACATGCATCAAGTTTGTTAATTTTTTTTTTCATTAGTTTATTTTGTTCAAATTTTCATTCATTAATTTTCCATCTAAGAGGAAAATATTATGTATCTAATATTTACTTGTGTTTCCATGATTTTTGATTCCTTTCCCTCCCACAAAATTGAGTAACATGCTGAATTTGTTTTCTCATAAATGCAAAATCTCTATAACTAGTTTTTTCACAATGATTTGATTTGATTTTGTTGTTTAATTTTTGTTTTTTTGATGATTTCTACATTCAGATCAGCTTAGTGTGTTTATAACAACTAATATATTAATATCTGTCTATGAAAAAAATGTTCATAACTAACTTTGTCTGATCATTGTGGTAATAGATGCCGAGTGTTAACTCCGGTTCATCCGACAAAGACTCCGAGGCATTTGCAGAAACCGATCCAACTGGTCGGTATGGTAGATACCCTGAACTATTAGGATGTGGTGCTGTGAAGAAAGTGTACCGTGCATTCGATCAAGAAGAAGGAATTGAGGTAGCATGGAACCAAGTGAAGCTAAGAAATTTCTGCGATGAGCCTGCTATGGTAGAGAGGCTTTATTCAGAAGTGAGGTTATTGAGAAGCTTGACAAACAAAAACATCATTGAACTTTATAGTGTTTGGAGCGATGATCGAAACAACACGCTTAATTTCATCACCGAGGTTTGTACAAGTGGGAATTTGAGAGAGTATAGGAAGAAACATAGACATGTTTCTATGAAGGCATTGAAGAAATGGTCAAGGCAGATTTTGAAAGGGTTGAATTATTTGCACACTCATGAGCCTTGCATCATTCATAGAGATCTCAATTGCAGTAATGTGTTTGTTAATGGGAATGTTGGCCAGGTAATTTTCCATTCCAATTCTGTTTTACTTTCAGTCATATTTTGCTTGATTGATAAGTTGAAAATTGATATGTTATTTTAAACTCCTTATAGTTTTTGTTTCTGTGAGATCTAAGCTAGGCAAAATAACCAGATTAATAGATTAATATTATTGTTTATAGAATAAAAAACTCGATAATTCTATGTTTTTTTATTTGTTCTGTTGTATTACTCTACCAATTTTCAACGTCAATGACCTATTTGATACCAACACTTTAGGTTGAATGCGTGTTTGTGTGTCCGAAACCCCTACTACACACCCACATTCTATTCAAAGATTGAAAAATAAAAATAGGTTTTCGCTTTGCCAACGTGTTGCAATCACAGTTTGGACACCTAACCGAGACTTCCAATCGGCTAGGTATAAAAAGGGACATGCCACAAATTGATTAGATTATTTTCAGCTTTTCGGTTTTAGATAAGAATATATGAATCCTGATTTTCAATTTTGTCTTGTATAAATGATGCCCTACATTTTGGACATTACCGACGTGTGTCGTCTCTGTGTTTGTGCTTGTGTTTCAGTCATCGTGCATAAGTTATGCTTTCCACATACGTGTAATGAATTTGAAATAACCATAAAGGCGTTAGTAACAATTTTTGTTTCATTCCATGGCTAACAGGTTAAGATTGGTGACTTGGGTTTAGCAGCAATTGTGGGGAAGAATCACATTGCACACACAATTCTTGGCACACCAGAGTTTATGGCTCCAGAATTATACGACGAAGACTACACAGAATTGGTGGACATATACTCATTTGGTATGTGTGTATTAGAAATGGTGACATTGGAAATTCCTTATAGTGAGTGTGACAATGTTGCCAAAATATACAAGAAAGTTTCTTCTGGGATAAGACCTGCTGCAATGAACAAGGTCAAAGATTCAGAGGTAAAGGAGTTCATTGAGAGGTGTCTTGCTCAGCCAAGGGCTAGACCTTCTGCTGCTGAGCTTCTTAAAGATCCTTTCTTCGATGAACTTGTTGGTGATGATGAAGATGAAGACGACGAAAATGATTGTTAA

Protein sequence

>MS.gene81401.t1

MMPSVNSGSSDKDSEAFAETDPTGRYGRYPELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDEPAMVERLYSEVRLLRSLTNKNIIELYSVWSDDRNNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSRQILKGLNYLHTHEPCIIHRDLNCSNVFVNGNVGQVKIGDLGLAAIVGKNHIAHTILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGIRPAAMNKVKDSEVKEFIERCLAQPRARPSAAELLKDPFFDELVGDDEDEDDENDC