Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81494.t1 | XP_013452368.1 | 95.7 | 957 | 39 | 1 | 1 | 955 | 1 | 957 | 0.00E+00 | 1515.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81494.t1 | A0A072UAG3 | 95.7 | 957 | 39 | 1 | 1 | 955 | 1 | 957 | 0.0e+00 | 1515.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene81494 | 0.821214 | 4.55E-53 | -1.69E-46 |
| MS.gene050812 | MS.gene81494 | 0.842506 | 2.48E-58 | -1.69E-46 |
| MS.gene051208 | MS.gene81494 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene81494 | 0.862645 | 4.38E-64 | -1.69E-46 |
| MS.gene051582 | MS.gene81494 | 0.851065 | 1.13E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene81494 | -0.833842 | 4.23E-56 | -1.69E-46 |
| MS.gene052134 | MS.gene81494 | 0.805116 | 1.56E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene81494 | 0.810349 | 1.20E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene81494 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene81494 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene81494 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene053330 | MS.gene81494 | 0.842522 | 2.46E-58 | -1.69E-46 |
| MS.gene053928 | MS.gene81494 | 0.809913 | 1.50E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene81494 | 0.810784 | 9.70E-51 | -1.69E-46 |
| MS.gene054110 | MS.gene81494 | 0.816721 | 4.78E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene81494 | 0.822576 | 2.20E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene81494 | 0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene81494 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene81494 | 0.916547 | 1.56E-85 | -1.69E-46 |
| MS.gene054920 | MS.gene81494 | 0.819559 | 1.09E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene81494 | 0.845631 | 3.60E-59 | -1.69E-46 |
| MS.gene055539 | MS.gene81494 | 0.849827 | 2.52E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene81494 | 0.878451 | 2.78E-69 | -1.69E-46 |
| MS.gene05594 | MS.gene81494 | 0.845544 | 3.80E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene81494 | 0.820395 | 7.02E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene81494 | 0.839096 | 1.94E-57 | -1.69E-46 |
| MS.gene057749 | MS.gene81494 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene81494 | 0.821811 | 3.31E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene81494 | 0.822264 | 2.60E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene81494 | 0.841312 | 5.13E-58 | -1.69E-46 |
| MS.gene058700 | MS.gene81494 | 0.830672 | 2.57E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene81494 | 0.814588 | 1.43E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene81494 | 0.813243 | 2.82E-51 | -1.69E-46 |
| MS.gene059141 | MS.gene81494 | 0.825938 | 3.57E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene81494 | 0.853031 | 3.13E-61 | -1.69E-46 |
| MS.gene059683 | MS.gene81494 | 0.80045 | 1.43E-48 | -1.69E-46 |
| MS.gene060407 | MS.gene81494 | 0.834024 | 3.81E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene81494 | 0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene81494 | 0.813729 | 2.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81494.t1 | MTR_6g053740 | 96.238 | 957 | 34 | 1 | 1 | 955 | 1 | 957 | 0.0 | 1887 |
| MS.gene81494.t1 | MTR_5g053260 | 32.587 | 402 | 263 | 4 | 415 | 813 | 144 | 540 | 4.47e-59 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81494.t1 | AT5G23890 | 46.957 | 986 | 444 | 25 | 1 | 949 | 1 | 944 | 0.0 | 743 |
| MS.gene81494.t1 | AT5G23890 | 47.958 | 857 | 377 | 20 | 125 | 949 | 1 | 820 | 0.0 | 685 |
| MS.gene81494.t1 | AT5G52410 | 57.537 | 544 | 224 | 3 | 410 | 952 | 215 | 752 | 0.0 | 599 |
| MS.gene81494.t1 | AT5G52410 | 35.772 | 123 | 59 | 5 | 1 | 117 | 1 | 109 | 6.45e-11 | 67.0 |
| MS.gene81494.t1 | AT5G52410 | 57.537 | 544 | 224 | 3 | 410 | 952 | 224 | 761 | 0.0 | 598 |
| MS.gene81494.t1 | AT5G52410 | 35.772 | 123 | 59 | 5 | 1 | 117 | 1 | 109 | 7.57e-11 | 66.6 |
| MS.gene81494.t1 | AT5G52410 | 58.580 | 507 | 182 | 4 | 442 | 924 | 2 | 504 | 0.0 | 576 |
| MS.gene81494.t1 | AT3G25680 | 35.219 | 389 | 244 | 3 | 427 | 813 | 171 | 553 | 1.71e-62 | 222 |
Find 209 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTCGCTTAAAATCTT+AGG | 0.129669 | 6.4:+20988343 | None:intergenic |
| CAGATGCTGCACCGACTTTC+TGG | 0.137059 | 6.4:-20985441 | MS.gene81494:CDS |
| TACTGGCTTACCATCATAAT+TGG | 0.190822 | 6.4:+20988519 | None:intergenic |
| AAGATTCCTTCTTCTTCTTC+TGG | 0.201471 | 6.4:+20990466 | None:intergenic |
| ATTTCTGAATCTCCAAATTC+TGG | 0.205362 | 6.4:-20988163 | MS.gene81494:CDS |
| CTAGTAGCTGATCTTTCTTC+TGG | 0.206191 | 6.4:-20985375 | MS.gene81494:CDS |
| AAATTACAGGCTGAAGAATT+TGG | 0.211510 | 6.4:-20983193 | MS.gene81494:CDS |
| AGTAGTTTCTGCAGCTTTAC+AGG | 0.219788 | 6.4:-20988104 | MS.gene81494:CDS |
| CATCCTGCTGCTCATTATTA+AGG | 0.228977 | 6.4:+20988494 | None:intergenic |
| CAGCATAGTGCTGTCGAATT+TGG | 0.229905 | 6.4:-20983127 | MS.gene81494:CDS |
| AGAATACTGATTTACTTAAA+TGG | 0.240941 | 6.4:+20988251 | None:intergenic |
| TGACAGGGCTGAAAGCTTAT+TGG | 0.253989 | 6.4:-20983332 | MS.gene81494:CDS |
| TCTTCTGATGCCGATATTAC+AGG | 0.260713 | 6.4:-20988940 | MS.gene81494:CDS |
| GAGAAAAGGGATCCAGAATT+TGG | 0.266196 | 6.4:+20988151 | None:intergenic |
| TCACCAAGAACATACCTTTC+AGG | 0.266855 | 6.4:+20985835 | None:intergenic |
| TGAACTTATGAGCGAACTTT+TGG | 0.268578 | 6.4:+20983038 | None:intergenic |
| TTTCTGGTTCAGCATTAAAT+TGG | 0.274007 | 6.4:+20988548 | None:intergenic |
| CTTTCAGGGGAGAAGTAAAA+AGG | 0.280105 | 6.4:+20985850 | None:intergenic |
| AAGAAGAAGAAGGAATCTTT+TGG | 0.292775 | 6.4:-20990462 | MS.gene81494:CDS |
| ACAAGATCCTGGCGCGATAA+AGG | 0.293222 | 6.4:+20985609 | None:intergenic |
| TTTCAGTTTGAAGTGGTATT+TGG | 0.300010 | 6.4:+20988650 | None:intergenic |
| GGTTGGTCCGATTCAGCAAC+TGG | 0.306448 | 6.4:-20990507 | MS.gene81494:CDS |
| ATGGGTCGGGTCTGATTCTA+AGG | 0.309439 | 6.4:-20990544 | MS.gene81494:CDS |
| ATAGTCACCTTGAATGTTAT+CGG | 0.317196 | 6.4:+20988828 | None:intergenic |
| TCCAAGAGATAAGGCAAAAT+AGG | 0.322176 | 6.4:+20989148 | None:intergenic |
| GGATCTTGTCAGCTGGAAAA+TGG | 0.323426 | 6.4:-20985595 | MS.gene81494:CDS |
| GGAGCAAGAAAATGGTAAAT+TGG | 0.328498 | 6.4:-20988893 | MS.gene81494:CDS |
| GCAACCTTTCTGTCAGCTTC+AGG | 0.332101 | 6.4:+20985552 | None:intergenic |
| GGAATAATTGCTCTTGCATT+TGG | 0.338900 | 6.4:-20985345 | MS.gene81494:intron |
| TGCTTGTTCTCTCACTCGTT+TGG | 0.340913 | 6.4:+20983492 | None:intergenic |
| TCCAAAACCTCATCTGGTTT+AGG | 0.343552 | 6.4:-20988433 | MS.gene81494:CDS |
| CCTCTAGATCATACTGTAAA+CGG | 0.344200 | 6.4:+20984682 | None:intergenic |
| ACTATTGATGATTCTGATAT+AGG | 0.344484 | 6.4:-20988802 | MS.gene81494:CDS |
| GATATTTCCAAAACCTCATC+TGG | 0.348534 | 6.4:-20988439 | MS.gene81494:CDS |
| GGCCTCCAAAACAAAATTAC+AGG | 0.351209 | 6.4:-20983206 | MS.gene81494:CDS |
| GTTGTGGGAGTAGGAGTTGC+TGG | 0.351961 | 6.4:-20989194 | MS.gene81494:CDS |
| ATTTACTTGTCCTGTAATAT+CGG | 0.352628 | 6.4:+20988930 | None:intergenic |
| GCAGGAATCAAAACCTTTCC+TGG | 0.353974 | 6.4:+20988076 | None:intergenic |
| TTCTAAGGGTGATGGGTTAT+CGG | 0.356171 | 6.4:-20990529 | MS.gene81494:CDS |
| AACAAGTTGGAGCAAGAAAA+TGG | 0.356887 | 6.4:-20988901 | MS.gene81494:CDS |
| CTGATCATCTAATGATGAAT+TGG | 0.359092 | 6.4:+20988219 | None:intergenic |
| CCAATTTATATCAAAATTGA+AGG | 0.360066 | 6.4:-20983233 | MS.gene81494:CDS |
| CAAAAGCTCCTGTTCATAAC+TGG | 0.363297 | 6.4:+20984977 | None:intergenic |
| TTACTTAAATGGTCATTTCC+AGG | 0.366462 | 6.4:+20988262 | None:intergenic |
| ACCTAAACCAGATGAGGTTT+TGG | 0.372911 | 6.4:+20988432 | None:intergenic |
| GAAGGTACAAAGCGAGTTGC+TGG | 0.388206 | 6.4:-20983091 | MS.gene81494:CDS |
| ATTTCTAATCTCACTTGAAC+TGG | 0.390712 | 6.4:+20988465 | None:intergenic |
| TTTCCAGGCTTGGCAGAAGC+TGG | 0.396329 | 6.4:-20985934 | MS.gene81494:intron |
| AGCAAGGGCAATAGCGGCTT+GGG | 0.396547 | 6.4:+20985121 | None:intergenic |
| TTATCTCTTGGAAAACGAAA+TGG | 0.397448 | 6.4:-20989137 | MS.gene81494:CDS |
| GCCGCTATTGCCCTTGCTAC+TGG | 0.401253 | 6.4:-20985116 | MS.gene81494:CDS |
| AAGAGAGGATCAAGAAGCTT+CGG | 0.401995 | 6.4:-20984737 | MS.gene81494:CDS |
| CAATTCATCATTAGATGATC+AGG | 0.410592 | 6.4:-20988218 | MS.gene81494:CDS |
| CTGCTAGCGGTGCTCTTTCA+AGG | 0.412353 | 6.4:-20986253 | MS.gene81494:intron |
| AAAGTTAAGGAATGAGGTTC+AGG | 0.412432 | 6.4:-20984808 | MS.gene81494:CDS |
| TAGTAGCTGATCTTTCTTCT+GGG | 0.414299 | 6.4:-20985374 | MS.gene81494:CDS |
| TGATCTTTCTTCTGGGGAGC+AGG | 0.415092 | 6.4:-20985367 | MS.gene81494:CDS |
| CAACTCAAGGGTCAGTTGAC+AGG | 0.415518 | 6.4:-20983348 | MS.gene81494:CDS |
| AGAACAAGCAAGAGCATTAG+AGG | 0.416242 | 6.4:-20983479 | MS.gene81494:CDS |
| GAAAGATCAGCTACTAGTGC+AGG | 0.416302 | 6.4:+20985381 | None:intergenic |
| GAAGATGATCAAGACAATAT+TGG | 0.419569 | 6.4:-20988328 | MS.gene81494:CDS |
| AGATTCCTTCTTCTTCTTCT+GGG | 0.423936 | 6.4:+20990467 | None:intergenic |
| ACGCCAAGGCCGGCTCTGAA+TGG | 0.424465 | 6.4:-20990563 | MS.gene81494:CDS |
| CCTGAGTCCGATAACATTCA+AGG | 0.424789 | 6.4:-20988835 | MS.gene81494:CDS |
| TATATCAAAATTGAAGGAAT+GGG | 0.425466 | 6.4:-20983227 | MS.gene81494:CDS |
| CAGTGACCCAGTTGCTGAAT+CGG | 0.427895 | 6.4:+20990500 | None:intergenic |
| CATCTTCGCTTAAAATCTTA+GGG | 0.430588 | 6.4:+20988344 | None:intergenic |
| AGAAGAAGACAGTGTTGCCT+TGG | 0.434500 | 6.4:-20984874 | MS.gene81494:CDS |
| GACCCATTCAGAGCCGGCCT+TGG | 0.436320 | 6.4:+20990560 | None:intergenic |
| AGAGGAGGCTAGAGATCGTT+GGG | 0.438647 | 6.4:-20983461 | MS.gene81494:CDS |
| ACTAGTGCAGGGCATGCATT+AGG | 0.440026 | 6.4:+20985393 | None:intergenic |
| GAAGTTACATGGCTCAATGC+TGG | 0.440097 | 6.4:-20983382 | MS.gene81494:CDS |
| TGCTCATTATTAAGGTCTAC+TGG | 0.440726 | 6.4:+20988502 | None:intergenic |
| TGGTGGGGTTGAAGGCTAAT+CGG | 0.442642 | 6.4:+20990664 | None:intergenic |
| CGCCAAGGCCGGCTCTGAAT+GGG | 0.442924 | 6.4:-20990562 | MS.gene81494:CDS |
| CAAGATCCTGGCGCGATAAA+GGG | 0.443743 | 6.4:+20985610 | None:intergenic |
| CTTTCAGGAGTTGTGGGAGT+AGG | 0.444823 | 6.4:-20989203 | MS.gene81494:intron |
| TGTCAAGTTCTGACCTTGAA+TGG | 0.445130 | 6.4:+20986021 | None:intergenic |
| CTGTAGCCCTTTATCGCGCC+AGG | 0.446841 | 6.4:-20985616 | MS.gene81494:intron |
| CGATTCAGCAACTGGGTCAC+TGG | 0.449043 | 6.4:-20990499 | MS.gene81494:CDS |
| TGGCCTTAACAAAACTCAAC+AGG | 0.451309 | 6.4:-20988308 | MS.gene81494:CDS |
| TCTAAGGGTGATGGGTTATC+GGG | 0.452141 | 6.4:-20990528 | MS.gene81494:CDS |
| AGCGAGTTGCTGGTGATTGT+AGG | 0.453284 | 6.4:-20983081 | MS.gene81494:CDS |
| CTCTAGATCATACTGTAAAC+GGG | 0.455789 | 6.4:+20984683 | None:intergenic |
| TGCGGCTATTGAATCAGAAA+TGG | 0.457851 | 6.4:-20984841 | MS.gene81494:CDS |
| TAGCAAGGGCAATAGCGGCT+TGG | 0.459860 | 6.4:+20985120 | None:intergenic |
| AAATCACCAGGTTGAACATC+AGG | 0.461055 | 6.4:+20986311 | None:intergenic |
| TATTAATGCCAGTTATGAAC+AGG | 0.463586 | 6.4:-20984985 | MS.gene81494:CDS |
| GAATGCCAGGAGCAGAGAAA+AGG | 0.464135 | 6.4:+20988137 | None:intergenic |
| CACCAAGAACATACCTTTCA+GGG | 0.466229 | 6.4:+20985836 | None:intergenic |
| AGAGAGGATCAAGAAGCTTC+GGG | 0.466699 | 6.4:-20984736 | MS.gene81494:CDS |
| TTATATCAAAATTGAAGGAA+TGG | 0.469067 | 6.4:-20983228 | MS.gene81494:CDS |
| TTGTCACAGGTTTATCTGGT+TGG | 0.469952 | 6.4:+20985147 | None:intergenic |
| AGGCCGGCTCTGAATGGGTC+GGG | 0.471957 | 6.4:-20990557 | MS.gene81494:CDS |
| TGACTTGCCTGCCTTTGAGA+TGG | 0.477195 | 6.4:+20983162 | None:intergenic |
| GAAATTGTGTTGTTTGACTC+AGG | 0.477685 | 6.4:+20988370 | None:intergenic |
| CGCGCCAGGATCTTGTCAGC+TGG | 0.483759 | 6.4:-20985602 | MS.gene81494:CDS |
| TAGTTTGCTTTCAGGAGTTG+TGG | 0.483993 | 6.4:-20989210 | MS.gene81494:intron |
| AGTGGCATCATTGATACCAT+TGG | 0.492279 | 6.4:+20988747 | None:intergenic |
| AAGTTACATGGCTCAATGCT+GGG | 0.495523 | 6.4:-20983381 | MS.gene81494:CDS |
| TTTGGATTAACTGTAAAAGA+AGG | 0.497057 | 6.4:-20983109 | MS.gene81494:CDS |
| ACTGATGGAGCAGGAATGCC+AGG | 0.497805 | 6.4:+20988124 | None:intergenic |
| GGGTCTGATTCTAAGGGTGA+TGG | 0.500951 | 6.4:-20990537 | MS.gene81494:CDS |
| AACTCAACAGGTCTTATATG+AGG | 0.501563 | 6.4:-20988296 | MS.gene81494:CDS |
| ACTGGCTTACCATCATAATT+GGG | 0.503200 | 6.4:+20988520 | None:intergenic |
| AATGCCAGGAGCAGAGAAAA+GGG | 0.505227 | 6.4:+20988138 | None:intergenic |
| GAAGCCTTTGACAACACATC+AGG | 0.506026 | 6.4:-20988974 | MS.gene81494:CDS |
| TACTTAAATGGTCATTTCCA+GGG | 0.506950 | 6.4:+20988263 | None:intergenic |
| AGACCTTAATAATGAGCAGC+AGG | 0.511809 | 6.4:-20988497 | MS.gene81494:CDS |
| TAGAGGAGGCTAGAGATCGT+TGG | 0.514166 | 6.4:-20983462 | MS.gene81494:CDS |
| TATGAGGAACAGAGTATCCC+TGG | 0.516671 | 6.4:-20988280 | MS.gene81494:CDS |
| AGTTTGCTTTCAGGAGTTGT+GGG | 0.517953 | 6.4:-20989209 | MS.gene81494:intron |
| TGGAATCAGGACTTGGGCAG+AGG | 0.518677 | 6.4:-20983521 | MS.gene81494:intron |
| TGAACCTGATCAAAAGCTGC+AGG | 0.521188 | 6.4:+20988058 | None:intergenic |
| AGGCTTCAGCCGAAGTTACA+TGG | 0.522394 | 6.4:-20983393 | MS.gene81494:CDS |
| GATCTTTCTTCTGGGGAGCA+GGG | 0.527714 | 6.4:-20985366 | MS.gene81494:CDS |
| TCCGTGCATAACGCCAAGGC+CGG | 0.528113 | 6.4:-20990573 | MS.gene81494:CDS |
| TTGGAGAAGCTCAAACGAAT+GGG | 0.528805 | 6.4:-20983313 | MS.gene81494:CDS |
| GCGAGTTGCTGGTGATTGTA+GGG | 0.532203 | 6.4:-20983080 | MS.gene81494:CDS |
| TTTACAGGTGCCTCCAGGAA+AGG | 0.532486 | 6.4:-20988089 | MS.gene81494:CDS |
| AGTCTGACGTGATGAGAAAG+AGG | 0.539581 | 6.4:+20990636 | None:intergenic |
| AACTCAAGGGTCAGTTGACA+GGG | 0.540042 | 6.4:-20983347 | MS.gene81494:CDS |
| GCAGCTTTACAGGTGCCTCC+AGG | 0.540450 | 6.4:-20988094 | MS.gene81494:CDS |
| AAGCTGGACTTATTGAAAGC+AGG | 0.543112 | 6.4:-20985918 | MS.gene81494:CDS |
| CGCTGGTTGGTATCTGCTAG+CGG | 0.545213 | 6.4:-20986266 | MS.gene81494:CDS |
| GCCGGCCTTGGCGTTATGCA+CGG | 0.546961 | 6.4:+20990572 | None:intergenic |
| TGAAGAGGCAAAACATGAGT+TGG | 0.547136 | 6.4:-20984916 | MS.gene81494:CDS |
| CTTGTTGCATGAGTCAGCTC+GGG | 0.547834 | 6.4:-20988701 | MS.gene81494:CDS |
| GAAAAGCCTTGTCCATGGCC+AGG | 0.548184 | 6.4:-20984653 | MS.gene81494:intron |
| GAAAACATACCCAATTATGA+TGG | 0.549370 | 6.4:-20988529 | MS.gene81494:CDS |
| GCATTATCTATGTACATGGC+AGG | 0.549375 | 6.4:+20986094 | None:intergenic |
| CCGTTTACAGTATGATCTAG+AGG | 0.551417 | 6.4:-20984682 | MS.gene81494:CDS |
| AAGGTCAGATAGATACATCT+CGG | 0.551816 | 6.4:-20988870 | MS.gene81494:CDS |
| GCTTCCTGAAGCTGACAGAA+AGG | 0.553773 | 6.4:-20985556 | MS.gene81494:intron |
| GGGGAGCAGTACTCAACTCA+AGG | 0.554003 | 6.4:-20983361 | MS.gene81494:CDS |
| ACCTCCTGATGTGTTGTCAA+AGG | 0.557320 | 6.4:+20988970 | None:intergenic |
| CAAGAAAATGGTAAATTGGA+AGG | 0.558455 | 6.4:-20988889 | MS.gene81494:CDS |
| TCTAATGATGAATTGGTCAA+TGG | 0.560047 | 6.4:+20988226 | None:intergenic |
| GAAGCTGCCATCTCAAAGGC+AGG | 0.560559 | 6.4:-20983169 | MS.gene81494:CDS |
| ACTTGTTGCATGAGTCAGCT+CGG | 0.560612 | 6.4:-20988702 | MS.gene81494:CDS |
| AAGGCCGGCTCTGAATGGGT+CGG | 0.563902 | 6.4:-20990558 | MS.gene81494:CDS |
| AGACCCGACCCATTCAGAGC+CGG | 0.565507 | 6.4:+20990554 | None:intergenic |
| AGCATTGAGCCATGTAACTT+CGG | 0.566469 | 6.4:+20983384 | None:intergenic |
| ATTGGAGAAGCTCAAACGAA+TGG | 0.567266 | 6.4:-20983314 | MS.gene81494:CDS |
| TTCTGATATAGGATCGGAGT+TGG | 0.568382 | 6.4:-20988791 | MS.gene81494:CDS |
| GGCATCATTGATACCATTGG+AGG | 0.569021 | 6.4:+20988750 | None:intergenic |
| CGACGTGTGCATAAATCACC+AGG | 0.569114 | 6.4:+20986299 | None:intergenic |
| GCAGAAACTACTGATGGAGC+AGG | 0.569460 | 6.4:+20988115 | None:intergenic |
| TCGTGAATATGCTCGCTGGT+TGG | 0.572821 | 6.4:-20986279 | MS.gene81494:CDS |
| CCTTGAATGTTATCGGACTC+AGG | 0.575875 | 6.4:+20988835 | None:intergenic |
| AGGTCAGATAGATACATCTC+GGG | 0.577818 | 6.4:-20988869 | MS.gene81494:CDS |
| GGAGATGCTTCTGACATAGT+TGG | 0.578390 | 6.4:-20985095 | MS.gene81494:CDS |
| CAGAAGCATCTCCAGTAGCA+AGG | 0.578725 | 6.4:+20985105 | None:intergenic |
| AATCGGAGTTGAAGAGATGT+TGG | 0.578908 | 6.4:+20990681 | None:intergenic |
| CAAAGAAGTGGTGGAAGACG+AGG | 0.581587 | 6.4:+20990597 | None:intergenic |
| AGCCGCACGTTCTTTCTCCA+AGG | 0.583452 | 6.4:+20984857 | None:intergenic |
| AGTAAATGCTGAGAACAAGT+TGG | 0.583946 | 6.4:-20988914 | MS.gene81494:CDS |
| TCCAGTAGCAAGGGCAATAG+CGG | 0.586351 | 6.4:+20985115 | None:intergenic |
| AGGGTGATGGGTTATCGGGT+TGG | 0.586727 | 6.4:-20990524 | MS.gene81494:CDS |
| TGATTCCCAGAAGAAGAAGA+AGG | 0.587923 | 6.4:-20990472 | MS.gene81494:CDS |
| AGTAGCTGATCTTTCTTCTG+GGG | 0.590948 | 6.4:-20985373 | MS.gene81494:CDS |
| TTGAACAGATATATATTCAG+TGG | 0.591238 | 6.4:+20988729 | None:intergenic |
| GTTGCTGGTGATTGTAGGGA+AGG | 0.591411 | 6.4:-20983076 | MS.gene81494:CDS |
| TTGCTCCGTGCATAACGCCA+AGG | 0.591537 | 6.4:-20990577 | MS.gene81494:CDS |
| GGTCTGATTCTAAGGGTGAT+GGG | 0.592109 | 6.4:-20990536 | MS.gene81494:CDS |
| ATCAGCACCTAAACCAGATG+AGG | 0.597185 | 6.4:+20988426 | None:intergenic |
| AATTGACAAGATCATCCTCA+TGG | 0.597415 | 6.4:-20983260 | MS.gene81494:CDS |
| GTCTGACGTGATGAGAAAGA+GGG | 0.599108 | 6.4:+20990637 | None:intergenic |
| AGTAGCATTATCTATGTACA+TGG | 0.600902 | 6.4:+20986090 | None:intergenic |
| AGAAGCATCTCCAGTAGCAA+GGG | 0.602025 | 6.4:+20985106 | None:intergenic |
| TGTCTATAAAACCAGAAAGT+CGG | 0.602692 | 6.4:+20985430 | None:intergenic |
| CGGCTGAAGCCTCCTTGCGG+AGG | 0.602998 | 6.4:+20983404 | None:intergenic |
| TGAACGAAAAGCCTTGTCCA+TGG | 0.606463 | 6.4:-20984658 | MS.gene81494:CDS |
| GTTGGTCCGATTCAGCAACT+GGG | 0.606734 | 6.4:-20990506 | MS.gene81494:CDS |
| TGGAGAAGCTGCCATCTCAA+AGG | 0.608787 | 6.4:-20983173 | MS.gene81494:CDS |
| TGCACGGAGCAAAGAAGTGG+TGG | 0.608863 | 6.4:+20990588 | None:intergenic |
| TGATGATTCTGATATAGGAT+CGG | 0.610207 | 6.4:-20988797 | MS.gene81494:CDS |
| ATTGTTTGGAATCAGGACTT+GGG | 0.610422 | 6.4:-20983527 | MS.gene81494:intron |
| CAGCACTATGCTGTAACTCG+TGG | 0.610898 | 6.4:+20983137 | None:intergenic |
| AAGAGATGTTGGTGAACATG+TGG | 0.611282 | 6.4:+20990692 | None:intergenic |
| GCCTTTGACAACACATCAGG+AGG | 0.619924 | 6.4:-20988971 | MS.gene81494:CDS |
| AAAGCTGCAGAAACTACTGA+TGG | 0.625334 | 6.4:+20988109 | None:intergenic |
| GGCTATTGAATCAGAAATGG+AGG | 0.628296 | 6.4:-20984838 | MS.gene81494:CDS |
| AGTTACATGGCTCAATGCTG+GGG | 0.628725 | 6.4:-20983380 | MS.gene81494:CDS |
| AGAGATGTTGGTGAACATGT+GGG | 0.631272 | 6.4:+20990693 | None:intergenic |
| ATATAAATTGGGAAACCATG+AGG | 0.631489 | 6.4:+20983245 | None:intergenic |
| AGCACTATGCTGTAACTCGT+GGG | 0.632506 | 6.4:+20983138 | None:intergenic |
| CACGTCGTGAATATGCTCGC+TGG | 0.643178 | 6.4:-20986283 | MS.gene81494:CDS |
| ATTGAGCCTGATGTTCAACC+TGG | 0.648300 | 6.4:-20986317 | MS.gene81494:CDS |
| AAAGATCAGCTACTAGTGCA+GGG | 0.652793 | 6.4:+20985382 | None:intergenic |
| TGGGTCGGGTCTGATTCTAA+GGG | 0.653419 | 6.4:-20990543 | MS.gene81494:CDS |
| TTATGCACGGAGCAAAGAAG+TGG | 0.654806 | 6.4:+20990585 | None:intergenic |
| CTTCGGCTGAAGCCTCCTTG+CGG | 0.664983 | 6.4:+20983401 | None:intergenic |
| ACCAAGAACATACCTTTCAG+GGG | 0.665184 | 6.4:+20985837 | None:intergenic |
| TCTGACGTGATGAGAAAGAG+GGG | 0.665582 | 6.4:+20990638 | None:intergenic |
| GACTGAAACTGTTAGTACTG+TGG | 0.666312 | 6.4:-20988398 | MS.gene81494:CDS |
| TGCCTTGGAGAAAGAACGTG+CGG | 0.673296 | 6.4:-20984859 | MS.gene81494:CDS |
| GAGACACGGAATCAAAGTAG+TGG | 0.675824 | 6.4:-20983437 | MS.gene81494:CDS |
| ACAAGCAAGAGCATTAGAGG+AGG | 0.676263 | 6.4:-20983476 | MS.gene81494:CDS |
| AGAGATCGTTGGGAGAGACA+CGG | 0.678075 | 6.4:-20983451 | MS.gene81494:CDS |
| GAAGTGGTGGAAGACGAGGT+TGG | 0.681051 | 6.4:+20990601 | None:intergenic |
| GGGAGCAGTACTCAACTCAA+GGG | 0.682992 | 6.4:-20983360 | MS.gene81494:CDS |
| ACAAAGTCTAATGAGTAACA+AGG | 0.685125 | 6.4:-20984778 | MS.gene81494:CDS |
| GGTTGACGAAGACCTCCGCA+AGG | 0.712367 | 6.4:-20983416 | MS.gene81494:CDS |
| CTGACGTGATGAGAAAGAGG+GGG | 0.713118 | 6.4:+20990639 | None:intergenic |
| ATTTGATGACATCACCCCTG+AGG | 0.716657 | 6.4:-20986059 | MS.gene81494:CDS |
| GGAATCAAAACCTTTCCTGG+AGG | 0.723513 | 6.4:+20988079 | None:intergenic |
| TGACGAAGACCTCCGCAAGG+AGG | 0.731713 | 6.4:-20983413 | MS.gene81494:CDS |
| CGAATGGGTGCAGATCTCAG+AGG | 0.766959 | 6.4:-20983298 | MS.gene81494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 20983030 | 20990730 | 20983030 | ID=MS.gene81494 |
| chr6.4 | mRNA | 20983030 | 20990730 | 20983030 | ID=MS.gene81494.t1;Parent=MS.gene81494 |
| chr6.4 | exon | 20990460 | 20990730 | 20990460 | ID=MS.gene81494.t1.exon1;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20990460 | 20990730 | 20990460 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20989132 | 20989218 | 20989132 | ID=MS.gene81494.t1.exon2;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20989132 | 20989218 | 20989132 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20988024 | 20989012 | 20988024 | ID=MS.gene81494.t1.exon3;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20988024 | 20989012 | 20988024 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20986254 | 20986342 | 20986254 | ID=MS.gene81494.t1.exon4;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20986254 | 20986342 | 20986254 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20986035 | 20986138 | 20986035 | ID=MS.gene81494.t1.exon5;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20986035 | 20986138 | 20986035 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20985850 | 20985949 | 20985850 | ID=MS.gene81494.t1.exon6;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20985850 | 20985949 | 20985850 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20985557 | 20985632 | 20985557 | ID=MS.gene81494.t1.exon7;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20985557 | 20985632 | 20985557 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20985346 | 20985460 | 20985346 | ID=MS.gene81494.t1.exon8;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20985346 | 20985460 | 20985346 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20984654 | 20985185 | 20984654 | ID=MS.gene81494.t1.exon9;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20984654 | 20985185 | 20984654 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| chr6.4 | exon | 20983030 | 20983534 | 20983030 | ID=MS.gene81494.t1.exon10;Parent=MS.gene81494.t1 |
| chr6.4 | CDS | 20983030 | 20983534 | 20983030 | ID=cds.MS.gene81494.t1;Parent=MS.gene81494.t1 |
| Gene Sequence |
| Protein sequence |
