Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81503.t1 | XP_013463978.1 | 95.1 | 364 | 17 | 1 | 1 | 364 | 1 | 363 | 1.70E-195 | 691.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81503.t1 | P93324 | 61.2 | 366 | 135 | 5 | 3 | 364 | 10 | 372 | 5.1e-124 | 445.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81503.t1 | A0A072V9H2 | 95.1 | 364 | 17 | 1 | 1 | 364 | 1 | 363 | 1.2e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04925 | MS.gene81503 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene049549 | MS.gene81503 | 0.819362 | 1.21E-52 | -1.69E-46 |
| MS.gene049813 | MS.gene81503 | 0.822962 | 1.79E-53 | -1.69E-46 |
| MS.gene051131 | MS.gene81503 | 0.814481 | 1.51E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene81503 | 0.821162 | 4.67E-53 | -1.69E-46 |
| MS.gene053887 | MS.gene81503 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene81503 | 0.83194 | 1.26E-55 | -1.69E-46 |
| MS.gene054277 | MS.gene81503 | 0.844656 | 6.61E-59 | -1.69E-46 |
| MS.gene056920 | MS.gene81503 | 0.804393 | 2.21E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene81503 | 0.820579 | 6.37E-53 | -1.69E-46 |
| MS.gene058450 | MS.gene81503 | 0.821986 | 3.02E-53 | -1.69E-46 |
| MS.gene059060 | MS.gene81503 | 0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene81503 | 0.821584 | 3.74E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene81503 | 0.823704 | 1.20E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene81503 | 0.81441 | 1.56E-51 | -1.69E-46 |
| MS.gene060790 | MS.gene81503 | 0.846357 | 2.29E-59 | -1.69E-46 |
| MS.gene061038 | MS.gene81503 | 0.817862 | 2.65E-52 | -1.69E-46 |
| MS.gene061092 | MS.gene81503 | 0.810098 | 1.36E-50 | -1.69E-46 |
| MS.gene061094 | MS.gene81503 | 0.810949 | 8.94E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81503.t1 | MTR_2g055940 | 95.055 | 364 | 17 | 1 | 1 | 364 | 1 | 363 | 0.0 | 711 |
| MS.gene81503.t1 | MTR_7g011900 | 75.207 | 363 | 87 | 3 | 3 | 364 | 10 | 370 | 0.0 | 565 |
| MS.gene81503.t1 | MTR_7g011990 | 68.595 | 363 | 108 | 4 | 3 | 364 | 10 | 367 | 0.0 | 516 |
| MS.gene81503.t1 | MTR_7g012020 | 68.871 | 363 | 110 | 3 | 3 | 364 | 9 | 369 | 0.0 | 515 |
| MS.gene81503.t1 | MTR_7g012040 | 68.871 | 363 | 109 | 4 | 3 | 364 | 9 | 368 | 0.0 | 508 |
| MS.gene81503.t1 | MTR_7g012090 | 63.315 | 368 | 127 | 4 | 3 | 364 | 10 | 375 | 3.67e-167 | 471 |
| MS.gene81503.t1 | MTR_7g012070 | 63.043 | 368 | 128 | 4 | 3 | 364 | 10 | 375 | 5.21e-167 | 471 |
| MS.gene81503.t1 | MTR_1g096310 | 61.475 | 366 | 134 | 5 | 3 | 364 | 10 | 372 | 1.04e-163 | 462 |
| MS.gene81503.t1 | MTR_7g012020 | 71.698 | 265 | 72 | 3 | 3 | 266 | 9 | 271 | 3.21e-132 | 380 |
| MS.gene81503.t1 | MTR_1g036460 | 50.272 | 368 | 172 | 7 | 3 | 364 | 8 | 370 | 5.29e-128 | 372 |
| MS.gene81503.t1 | MTR_1g036490 | 50.543 | 368 | 171 | 8 | 3 | 364 | 8 | 370 | 1.26e-127 | 371 |
| MS.gene81503.t1 | MTR_7g012020 | 71.951 | 246 | 66 | 3 | 3 | 247 | 9 | 252 | 8.08e-121 | 349 |
| MS.gene81503.t1 | MTR_1g036510 | 51.282 | 351 | 162 | 6 | 20 | 364 | 37 | 384 | 3.42e-120 | 352 |
| MS.gene81503.t1 | MTR_3g021440 | 50.852 | 352 | 168 | 5 | 15 | 364 | 22 | 370 | 8.60e-118 | 346 |
| MS.gene81503.t1 | MTR_3g021430 | 49.860 | 357 | 174 | 5 | 10 | 364 | 4 | 357 | 1.54e-117 | 345 |
| MS.gene81503.t1 | MTR_3g092900 | 43.407 | 364 | 197 | 7 | 3 | 364 | 7 | 363 | 6.23e-104 | 310 |
| MS.gene81503.t1 | MTR_5g098170 | 41.504 | 359 | 201 | 8 | 10 | 364 | 10 | 363 | 2.31e-90 | 276 |
| MS.gene81503.t1 | MTR_0591s0010 | 40.462 | 346 | 200 | 6 | 22 | 364 | 35 | 377 | 1.46e-86 | 266 |
| MS.gene81503.t1 | MTR_1g050220 | 44.444 | 333 | 129 | 7 | 20 | 347 | 6 | 287 | 5.79e-86 | 262 |
| MS.gene81503.t1 | MTR_7g118320 | 39.595 | 346 | 203 | 6 | 22 | 364 | 20 | 362 | 1.68e-82 | 255 |
| MS.gene81503.t1 | MTR_6g060290 | 72.881 | 177 | 31 | 3 | 3 | 178 | 10 | 170 | 6.25e-82 | 247 |
| MS.gene81503.t1 | MTR_7g118300 | 40.407 | 344 | 194 | 8 | 25 | 364 | 39 | 375 | 6.18e-81 | 252 |
| MS.gene81503.t1 | MTR_8g068690 | 39.067 | 343 | 203 | 6 | 25 | 364 | 37 | 376 | 1.98e-80 | 251 |
| MS.gene81503.t1 | MTR_1g036510 | 51.984 | 252 | 113 | 5 | 20 | 266 | 37 | 285 | 8.03e-80 | 246 |
| MS.gene81503.t1 | MTR_8g068750 | 37.572 | 346 | 210 | 6 | 22 | 364 | 35 | 377 | 3.13e-78 | 245 |
| MS.gene81503.t1 | MTR_8g068870 | 36.494 | 348 | 215 | 6 | 20 | 364 | 19 | 363 | 1.16e-74 | 235 |
| MS.gene81503.t1 | MTR_8g068570 | 38.658 | 313 | 160 | 7 | 22 | 331 | 35 | 318 | 2.73e-68 | 218 |
| MS.gene81503.t1 | MTR_8g024160 | 40.068 | 292 | 165 | 6 | 77 | 364 | 43 | 328 | 4.49e-68 | 217 |
| MS.gene81503.t1 | MTR_1g036510 | 49.784 | 231 | 108 | 5 | 20 | 245 | 37 | 264 | 1.35e-67 | 214 |
| MS.gene81503.t1 | MTR_6g078850 | 36.338 | 355 | 217 | 7 | 15 | 362 | 32 | 384 | 1.15e-66 | 219 |
| MS.gene81503.t1 | MTR_8g068730 | 35.549 | 346 | 185 | 7 | 22 | 364 | 35 | 345 | 3.53e-62 | 202 |
| MS.gene81503.t1 | MTR_2g072790 | 33.046 | 348 | 214 | 8 | 10 | 349 | 4 | 340 | 3.21e-57 | 190 |
| MS.gene81503.t1 | MTR_3g096050 | 34.409 | 372 | 222 | 11 | 1 | 364 | 1 | 358 | 5.33e-56 | 187 |
| MS.gene81503.t1 | MTR_8g068690 | 37.603 | 242 | 147 | 4 | 29 | 268 | 41 | 280 | 1.91e-52 | 176 |
| MS.gene81503.t1 | MTR_3g096070 | 33.239 | 355 | 197 | 11 | 1 | 349 | 1 | 321 | 9.67e-52 | 175 |
| MS.gene81503.t1 | MTR_0017s0100 | 34.421 | 337 | 200 | 13 | 35 | 363 | 44 | 367 | 1.31e-49 | 171 |
| MS.gene81503.t1 | MTR_0079s0070 | 34.783 | 322 | 188 | 10 | 35 | 347 | 10 | 318 | 4.40e-49 | 168 |
| MS.gene81503.t1 | MTR_4g038440 | 34.783 | 322 | 188 | 10 | 35 | 347 | 44 | 352 | 9.62e-49 | 168 |
| MS.gene81503.t1 | MTR_8g068600 | 36.245 | 229 | 142 | 4 | 40 | 266 | 27 | 253 | 1.79e-44 | 155 |
| MS.gene81503.t1 | MTR_3g083620 | 31.962 | 316 | 200 | 7 | 33 | 344 | 38 | 342 | 1.10e-43 | 155 |
| MS.gene81503.t1 | MTR_8g068740 | 35.249 | 261 | 133 | 5 | 22 | 280 | 35 | 261 | 1.33e-43 | 152 |
| MS.gene81503.t1 | MTR_5g074600 | 31.387 | 274 | 173 | 7 | 99 | 363 | 91 | 358 | 3.12e-43 | 154 |
| MS.gene81503.t1 | MTR_5g074680 | 29.532 | 342 | 212 | 10 | 35 | 363 | 34 | 359 | 7.09e-43 | 152 |
| MS.gene81503.t1 | MTR_4g088340 | 28.994 | 338 | 222 | 8 | 32 | 363 | 7 | 332 | 3.18e-39 | 142 |
| MS.gene81503.t1 | MTR_4g088345 | 28.402 | 338 | 224 | 7 | 32 | 363 | 30 | 355 | 4.55e-39 | 142 |
| MS.gene81503.t1 | MTR_5g074540 | 34.101 | 217 | 132 | 4 | 140 | 348 | 113 | 326 | 7.83e-38 | 139 |
| MS.gene81503.t1 | MTR_3g096050 | 35.433 | 254 | 154 | 6 | 16 | 266 | 13 | 259 | 8.26e-38 | 137 |
| MS.gene81503.t1 | MTR_5g074580 | 27.566 | 341 | 220 | 11 | 35 | 363 | 34 | 359 | 9.72e-38 | 139 |
| MS.gene81503.t1 | MTR_1g076940 | 28.438 | 320 | 217 | 6 | 35 | 348 | 33 | 346 | 6.66e-37 | 137 |
| MS.gene81503.t1 | MTR_4g033015 | 29.341 | 334 | 224 | 7 | 34 | 359 | 32 | 361 | 1.10e-35 | 134 |
| MS.gene81503.t1 | MTR_4g033200 | 29.042 | 334 | 225 | 7 | 34 | 359 | 32 | 361 | 7.77e-35 | 131 |
| MS.gene81503.t1 | MTR_4g088200 | 28.972 | 321 | 216 | 7 | 34 | 348 | 32 | 346 | 9.10e-35 | 131 |
| MS.gene81503.t1 | MTR_7g014570 | 31.915 | 235 | 149 | 5 | 135 | 363 | 122 | 351 | 2.26e-34 | 130 |
| MS.gene81503.t1 | MTR_4g079160 | 34.694 | 196 | 120 | 4 | 159 | 348 | 147 | 340 | 3.06e-34 | 129 |
| MS.gene81503.t1 | MTR_4g033150 | 28.743 | 334 | 226 | 7 | 34 | 359 | 32 | 361 | 3.24e-34 | 129 |
| MS.gene81503.t1 | MTR_7g024520 | 33.824 | 204 | 129 | 4 | 163 | 362 | 147 | 348 | 6.20e-34 | 129 |
| MS.gene81503.t1 | MTR_8g068620 | 47.706 | 109 | 57 | 0 | 158 | 266 | 2 | 110 | 1.35e-33 | 121 |
| MS.gene81503.t1 | MTR_7g014510 | 26.471 | 306 | 209 | 6 | 63 | 363 | 62 | 356 | 1.66e-33 | 127 |
| MS.gene81503.t1 | MTR_7g024500 | 26.625 | 323 | 215 | 9 | 32 | 348 | 29 | 335 | 2.10e-33 | 127 |
| MS.gene81503.t1 | MTR_4g088190 | 29.503 | 322 | 216 | 7 | 34 | 348 | 32 | 349 | 3.53e-30 | 119 |
| MS.gene81503.t1 | MTR_5g074610 | 29.098 | 244 | 139 | 5 | 126 | 363 | 110 | 325 | 5.44e-30 | 117 |
| MS.gene81503.t1 | MTR_4g038440 | 34.310 | 239 | 138 | 7 | 35 | 266 | 44 | 270 | 1.47e-29 | 115 |
| MS.gene81503.t1 | MTR_4g033170 | 29.924 | 264 | 160 | 8 | 34 | 288 | 32 | 279 | 5.60e-26 | 107 |
| MS.gene81503.t1 | MTR_4g033085 | 29.658 | 263 | 160 | 8 | 34 | 287 | 32 | 278 | 1.94e-24 | 102 |
| MS.gene81503.t1 | MTR_1g076930 | 24.790 | 238 | 169 | 5 | 32 | 266 | 7 | 237 | 2.74e-20 | 89.4 |
| MS.gene81503.t1 | MTR_6g060280 | 69.355 | 62 | 13 | 2 | 219 | 275 | 2 | 62 | 3.12e-20 | 84.3 |
| MS.gene81503.t1 | MTR_8g068760 | 38.000 | 100 | 60 | 2 | 266 | 364 | 135 | 233 | 4.63e-16 | 77.0 |
| MS.gene81503.t1 | MTR_8g068760 | 33.600 | 125 | 80 | 3 | 20 | 142 | 20 | 143 | 6.67e-11 | 62.0 |
| MS.gene81503.t1 | MTR_0794s0020 | 25.792 | 221 | 157 | 5 | 34 | 251 | 32 | 248 | 3.65e-15 | 74.7 |
| MS.gene81503.t1 | MTR_8g068580 | 42.391 | 92 | 51 | 2 | 274 | 364 | 43 | 133 | 1.29e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81503.t1 | AT5G54160 | 44.633 | 354 | 190 | 6 | 12 | 364 | 13 | 361 | 1.56e-102 | 307 |
| MS.gene81503.t1 | AT1G77520 | 38.136 | 354 | 209 | 7 | 19 | 364 | 30 | 381 | 7.45e-83 | 257 |
| MS.gene81503.t1 | AT1G51990 | 39.286 | 336 | 198 | 5 | 13 | 344 | 10 | 343 | 8.52e-83 | 256 |
| MS.gene81503.t1 | AT1G51990 | 38.988 | 336 | 199 | 5 | 13 | 344 | 10 | 343 | 1.58e-82 | 256 |
| MS.gene81503.t1 | AT1G77530 | 40.678 | 354 | 200 | 7 | 19 | 364 | 30 | 381 | 7.80e-79 | 247 |
| MS.gene81503.t1 | AT1G33030 | 39.535 | 344 | 195 | 8 | 22 | 358 | 10 | 347 | 6.19e-78 | 243 |
| MS.gene81503.t1 | AT1G63140 | 38.136 | 354 | 209 | 8 | 19 | 364 | 30 | 381 | 1.86e-76 | 241 |
| MS.gene81503.t1 | AT1G63140 | 38.136 | 354 | 209 | 8 | 19 | 364 | 50 | 401 | 2.91e-76 | 241 |
| MS.gene81503.t1 | AT1G21100 | 39.255 | 349 | 197 | 9 | 15 | 354 | 22 | 364 | 6.48e-70 | 223 |
| MS.gene81503.t1 | AT5G53810 | 37.719 | 342 | 202 | 8 | 32 | 364 | 39 | 378 | 2.35e-69 | 222 |
| MS.gene81503.t1 | AT1G21130 | 38.968 | 349 | 198 | 9 | 15 | 354 | 22 | 364 | 1.57e-68 | 220 |
| MS.gene81503.t1 | AT1G21110 | 38.682 | 349 | 199 | 9 | 15 | 354 | 22 | 364 | 6.28e-67 | 216 |
| MS.gene81503.t1 | AT1G21120 | 38.395 | 349 | 200 | 9 | 15 | 354 | 22 | 364 | 6.03e-66 | 213 |
| MS.gene81503.t1 | AT1G76790 | 37.701 | 374 | 209 | 11 | 6 | 364 | 1 | 365 | 1.49e-65 | 212 |
| MS.gene81503.t1 | AT1G21120 | 38.395 | 349 | 200 | 9 | 15 | 354 | 70 | 412 | 2.91e-65 | 213 |
| MS.gene81503.t1 | AT3G53140 | 34.795 | 342 | 199 | 8 | 20 | 348 | 14 | 344 | 3.71e-59 | 195 |
| MS.gene81503.t1 | AT1G62900 | 42.233 | 206 | 116 | 3 | 161 | 364 | 1 | 205 | 2.14e-57 | 186 |
| MS.gene81503.t1 | AT5G37170 | 33.133 | 332 | 181 | 9 | 41 | 364 | 36 | 334 | 1.48e-51 | 175 |
| MS.gene81503.t1 | AT5G37170 | 41.414 | 198 | 112 | 4 | 170 | 364 | 38 | 234 | 2.03e-51 | 171 |
| MS.gene81503.t1 | AT1G33030 | 39.600 | 250 | 145 | 5 | 22 | 269 | 10 | 255 | 5.23e-51 | 171 |
| MS.gene81503.t1 | AT1G33030 | 39.676 | 247 | 143 | 5 | 22 | 266 | 10 | 252 | 2.99e-50 | 169 |
| MS.gene81503.t1 | AT5G37170 | 41.176 | 187 | 106 | 4 | 181 | 364 | 1 | 186 | 3.69e-48 | 161 |
| MS.gene81503.t1 | AT1G63140 | 36.614 | 254 | 154 | 5 | 19 | 266 | 50 | 302 | 2.48e-44 | 155 |
| MS.gene81503.t1 | AT1G77530 | 38.298 | 235 | 138 | 4 | 19 | 247 | 30 | 263 | 1.43e-39 | 141 |
| MS.gene81503.t1 | AT1G21130 | 37.838 | 259 | 148 | 7 | 15 | 266 | 22 | 274 | 4.21e-39 | 141 |
| MS.gene81503.t1 | AT4G35150 | 31.687 | 243 | 148 | 7 | 123 | 348 | 68 | 309 | 3.94e-38 | 139 |
| MS.gene81503.t1 | AT4G35160 | 33.840 | 263 | 150 | 8 | 105 | 348 | 109 | 366 | 2.14e-36 | 136 |
| MS.gene81503.t1 | AT1G63140 | 35.319 | 235 | 145 | 5 | 19 | 247 | 50 | 283 | 6.64e-34 | 127 |
Find 0 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAATTTGTATTGT+AGG | + | 16973:107940-107959 | MS.gene81503:intron | 10.0% |
| !! | AAAATTACCAAATTTCATTT+AGG | + | 16973:108354-108373 | MS.gene81503:intron | 15.0% |
| !! | AAATTACCAAATTTCATTTA+GGG | + | 16973:108355-108374 | MS.gene81503:intron | 15.0% |
| !! | TATATATAGAAAGTAATCAT+TGG | - | 16973:108302-108321 | None:intergenic | 15.0% |
| !! | AAATTTATTCCCTTTATTGA+TGG | - | 16973:108215-108234 | None:intergenic | 20.0% |
| !! | AATTTATTCCCTTTATTGAT+GGG | - | 16973:108214-108233 | None:intergenic | 20.0% |
| !! | TAATCATTGGATATAACTTT+AGG | - | 16973:108289-108308 | None:intergenic | 20.0% |
| !! | TTGAAAGAATATGAAAGTTT+GGG | + | 16973:108771-108790 | MS.gene81503:CDS | 20.0% |
| !! | TTTGAAAGAATATGAAAGTT+TGG | + | 16973:108770-108789 | MS.gene81503:CDS | 20.0% |
| ! | ATATCTATGTATGAGTACTT+TGG | + | 16973:108023-108042 | MS.gene81503:CDS | 25.0% |
| ! | TTCCATTAACTTTCTTGAAT+AGG | - | 16973:108004-108023 | None:intergenic | 25.0% |
| !! | TTGGATATAACTTTAGGAAT+AGG | - | 16973:108283-108302 | None:intergenic | 25.0% |
| !!! | TTTGTTGATGATGAAAATGA+TGG | + | 16973:107791-107810 | MS.gene81503:CDS | 25.0% |
| AGAATCGTTGAAGAATACAA+AGG | + | 16973:108113-108132 | MS.gene81503:CDS | 30.0% | |
| ATCTCGATTCATTTATGGTA+TGG | + | 16973:108707-108726 | MS.gene81503:CDS | 30.0% | |
| GACCTATTCAAGAAAGTTAA+TGG | + | 16973:107999-108018 | MS.gene81503:CDS | 30.0% | |
| GTATTGTAGGTCTAATTTCA+AGG | + | 16973:107953-107972 | MS.gene81503:intron | 30.0% | |
| TTGGATCCCTAAATGAAATT+TGG | - | 16973:108364-108383 | None:intergenic | 30.0% | |
| ! | ATGATAATGACCTTTCCATT+TGG | - | 16973:108648-108667 | None:intergenic | 30.0% |
| ! | GTAGTACTTTGAGAGTTTAT+GGG | + | 16973:107747-107766 | MS.gene81503:CDS | 30.0% |
| ! | TAGTACTTTGAGAGTTTATG+GGG | + | 16973:107748-107767 | MS.gene81503:CDS | 30.0% |
| !! | GAAAATGATGGTGGTTATTT+GGG | + | 16973:107803-107822 | MS.gene81503:CDS | 30.0% |
| !! | TGAAAATGATGGTGGTTATT+TGG | + | 16973:107802-107821 | MS.gene81503:CDS | 30.0% |
| AACATCATGTTTCTCACAGT+TGG | + | 16973:108732-108751 | MS.gene81503:CDS | 35.0% | |
| ATAATGACCTTTCCATTTGG+TGG | - | 16973:108645-108664 | None:intergenic | 35.0% | |
| ATCGAGTCTATTTGGTAAGT+CGG | - | 16973:107660-107679 | None:intergenic | 35.0% | |
| CAAGGAAGTAATAGTGAATG+AGG | + | 16973:107971-107990 | MS.gene81503:CDS | 35.0% | |
| CATTCCAAACACTTTGCATA+TGG | - | 16973:107907-107926 | None:intergenic | 35.0% | |
| CATTTAGGGATCCAACATAT+TGG | + | 16973:108369-108388 | MS.gene81503:intron | 35.0% | |
| GAAGAATACAAAGGTCTTGA+GGG | + | 16973:108122-108141 | MS.gene81503:CDS | 35.0% | |
| GCCAAATACCCATCAATAAA+GGG | + | 16973:108203-108222 | MS.gene81503:CDS | 35.0% | |
| TGAAGAATACAAAGGTCTTG+AGG | + | 16973:108121-108140 | MS.gene81503:CDS | 35.0% | |
| TGCCAAATACCCATCAATAA+AGG | + | 16973:108202-108221 | MS.gene81503:CDS | 35.0% | |
| ! | AACTTTAGGAATAGGTTACC+TGG | - | 16973:108275-108294 | None:intergenic | 35.0% |
| ! | GGTAGTACTTTGAGAGTTTA+TGG | + | 16973:107746-107765 | MS.gene81503:CDS | 35.0% |
| ! | GTATCAACTATGGTTGATGT+AGG | + | 16973:108146-108165 | MS.gene81503:CDS | 35.0% |
| ! | TAGTCCATATGCAAAGTGTT+TGG | + | 16973:107900-107919 | MS.gene81503:intron | 35.0% |
| ! | TATGGTGTTAGGTTCTGTTA+TGG | + | 16973:107517-107536 | MS.gene81503:CDS | 35.0% |
| ! | TCCCTTTATTGATGGGTATT+TGG | - | 16973:108207-108226 | None:intergenic | 35.0% |
| ! | TTTAGAGTGTATGCCATAAC+TGG | + | 16973:108571-108590 | MS.gene81503:intron | 35.0% |
| !! | ACACTCTAAAACAATGAGAG+AGG | - | 16973:108561-108580 | None:intergenic | 35.0% |
| !! | ATGTTTGAAAGTGTTCCACA+AGG | + | 16973:108399-108418 | MS.gene81503:CDS | 35.0% |
| !! | GTTGATGATGAAAATGATGG+TGG | + | 16973:107794-107813 | MS.gene81503:CDS | 35.0% |
| AACACACGATCGAGTCTATT+TGG | - | 16973:107668-107687 | None:intergenic | 40.0% | |
| ACATGCTTCCTCCAATATGT+TGG | - | 16973:108383-108402 | None:intergenic | 40.0% | |
| AGCTTTACCACCAAATGGAA+AGG | + | 16973:108635-108654 | MS.gene81503:CDS | 40.0% | |
| AGGAGATGCCATACTACTTA+AGG | + | 16973:108419-108438 | MS.gene81503:CDS | 40.0% | |
| ATCATGTTTCTCACAGTTGG+TGG | + | 16973:108735-108754 | MS.gene81503:CDS | 40.0% | |
| ATCATTGCTAGCAGCAATGA+TGG | + | 16973:107587-107606 | MS.gene81503:CDS | 40.0% | |
| ATTGCAGCATTAAGAACTGC+AGG | - | 16973:107548-107567 | None:intergenic | 40.0% | |
| ATTGTTCATCCGACCAGTTA+TGG | - | 16973:108587-108606 | None:intergenic | 40.0% | |
| CACAAAGCTTTACCACCAAA+TGG | + | 16973:108630-108649 | MS.gene81503:CDS | 40.0% | |
| CACACTGACCTTAAGTAGTA+TGG | - | 16973:108430-108449 | None:intergenic | 40.0% | |
| GAAAGTTTGGGTAAACGATC+TGG | + | 16973:108783-108802 | MS.gene81503:CDS | 40.0% | |
| GACGCATCTCGATTCATTTA+TGG | + | 16973:108702-108721 | MS.gene81503:CDS | 40.0% | |
| TAGTGATACACTCTCTGCTA+TGG | + | 16973:107499-107518 | MS.gene81503:CDS | 40.0% | |
| TCATTGCTAGCAGCAATGAT+GGG | + | 16973:107588-107607 | MS.gene81503:CDS | 40.0% | |
| TGTAAAGTTCCATGACTTCG+AGG | - | 16973:108848-108867 | None:intergenic | 40.0% | |
| TTAGGGATCCAACATATTGG+AGG | + | 16973:108372-108391 | MS.gene81503:intron | 40.0% | |
| ! | AAAGCCTTGTGACACGTAAA+TGG | - | 16973:107839-107858 | None:intergenic | 40.0% |
| ! | GGTGCATTTTCAATCACTTG+AGG | - | 16973:108245-108264 | None:intergenic | 40.0% |
| ! | TCAACTATGGTTGATGTAGG+AGG | + | 16973:108149-108168 | MS.gene81503:CDS | 40.0% |
| !! | ACAAGGCTTTGTTTGGAATG+TGG | + | 16973:107849-107868 | MS.gene81503:CDS | 40.0% |
| !! | TCTTGAGGGAGTATCAACTA+TGG | + | 16973:108136-108155 | MS.gene81503:CDS | 40.0% |
| AAGTTCCATGACTTCGAGGA+TGG | - | 16973:108844-108863 | None:intergenic | 45.0% | |
| AATAGGTTACCTGGAGTAGG+TGG | - | 16973:108266-108285 | None:intergenic | 45.0% | |
| ACACTCTCTGCTATGGTGTT+AGG | + | 16973:107506-107525 | MS.gene81503:CDS | 45.0% | |
| ACTACTGTCACCTGTTTGTG+AGG | - | 16973:107483-107502 | None:intergenic | 45.0% | |
| AGGAATAGGTTACCTGGAGT+AGG | - | 16973:108269-108288 | None:intergenic | 45.0% | |
| AGTACTACCATCATCGTCGT+TGG | - | 16973:107735-107754 | None:intergenic | 45.0% | |
| AGTAGTATGGCATCTCCTTG+TGG | - | 16973:108417-108436 | None:intergenic | 45.0% | |
| ATGAATCGAGATGCGTCTGT+TGG | - | 16973:108699-108718 | None:intergenic | 45.0% | |
| CACACCATTTACGTGTCACA+AGG | + | 16973:107832-107851 | MS.gene81503:CDS | 45.0% | |
| GAGTGTATGCCATAACTGGT+CGG | + | 16973:108575-108594 | MS.gene81503:intron | 45.0% | |
| GTTTATGGGGTCACTTCTTC+TGG | + | 16973:107761-107780 | MS.gene81503:CDS | 45.0% | |
| TTTCTCCATCCTCGAAGTCA+TGG | + | 16973:108836-108855 | MS.gene81503:CDS | 45.0% | |
| ! | ACTATGGTTGATGTAGGAGG+TGG | + | 16973:108152-108171 | MS.gene81503:CDS | 45.0% |
| !! | ACGTGTCACAAGGCTTTGTT+TGG | + | 16973:107842-107861 | MS.gene81503:CDS | 45.0% |
| !! | GGTAAGTCGGAGTGTTGATT+TGG | - | 16973:107647-107666 | None:intergenic | 45.0% |
| !! | GTTTCTCACAGTTGGTGGAA+GGG | + | 16973:108740-108759 | MS.gene81503:CDS | 45.0% |
| !! | TCTGTTGGTTCTGGAACATC+TGG | - | 16973:108684-108703 | None:intergenic | 45.0% |
| !! | TGTTTCTCACAGTTGGTGGA+AGG | + | 16973:108739-108758 | MS.gene81503:CDS | 45.0% |
| AATCGCACCAACGACGATGA+TGG | + | 16973:107725-107744 | MS.gene81503:CDS | 50.0% | |
| ATCATCGTCGTTGGTGCGAT+TGG | - | 16973:107726-107745 | None:intergenic | 50.0% | |
| GAAAATGCACCACCTACTCC+AGG | + | 16973:108254-108273 | MS.gene81503:CDS | 50.0% | |
| GGAACTCACACCTCACAAAC+AGG | + | 16973:107470-107489 | MS.gene81503:CDS | 50.0% | |
| GTTGATGTAGGAGGTGGCAG+TGG | + | 16973:108158-108177 | MS.gene81503:CDS | 55.0% | |
| !! | CGAGATGCGTCTGTTGGTTC+TGG | - | 16973:108693-108712 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16973 | gene | 107452 | 108872 | 107452 | ID=MS.gene81503 |
| 16973 | mRNA | 107452 | 108872 | 107452 | ID=MS.gene81503.t1;Parent=MS.gene81503 |
| 16973 | exon | 107452 | 107870 | 107452 | ID=MS.gene81503.t1.exon1;Parent=MS.gene81503.t1 |
| 16973 | CDS | 107452 | 107870 | 107452 | ID=cds.MS.gene81503.t1;Parent=MS.gene81503.t1 |
| 16973 | exon | 107962 | 108275 | 107962 | ID=MS.gene81503.t1.exon2;Parent=MS.gene81503.t1 |
| 16973 | CDS | 107962 | 108275 | 107962 | ID=cds.MS.gene81503.t1;Parent=MS.gene81503.t1 |
| 16973 | exon | 108376 | 108440 | 108376 | ID=MS.gene81503.t1.exon3;Parent=MS.gene81503.t1 |
| 16973 | CDS | 108376 | 108440 | 108376 | ID=cds.MS.gene81503.t1;Parent=MS.gene81503.t1 |
| 16973 | exon | 108576 | 108872 | 108576 | ID=MS.gene81503.t1.exon4;Parent=MS.gene81503.t1 |
| 16973 | CDS | 108576 | 108872 | 108576 | ID=cds.MS.gene81503.t1;Parent=MS.gene81503.t1 |
| Gene Sequence |
| Protein sequence |
