Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82119.t1 | RHN54641.1 | 96.5 | 171 | 6 | 0 | 1 | 171 | 532 | 702 | 7.20E-80 | 306.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82119.t1 | Q9FT73 | 56.2 | 176 | 67 | 2 | 1 | 170 | 532 | 703 | 2.6e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82119.t1 | G7K6R5 | 96.5 | 171 | 6 | 0 | 1 | 171 | 515 | 685 | 5.2e-80 | 306.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene82119 | 0.80216 | 6.40E-49 | -1.69E-46 |
| MS.gene049979 | MS.gene82119 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene82119 | 0.815447 | 9.20E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene82119 | 0.822906 | 1.84E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene82119 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene82119 | 0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene82119 | 0.836303 | 1.01E-56 | -1.69E-46 |
| MS.gene052020 | MS.gene82119 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene052302 | MS.gene82119 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene82119 | 0.82864 | 8.04E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene82119 | 0.828527 | 8.56E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene82119 | 0.806534 | 7.85E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene82119 | 0.811286 | 7.56E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene82119 | 0.803883 | 2.82E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene82119 | 0.808554 | 2.93E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene82119 | 0.801865 | 7.36E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene82119 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene82119 | 0.800018 | 1.75E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene82119 | 0.800811 | 1.21E-48 | -1.69E-46 |
| MS.gene057260 | MS.gene82119 | 0.80025 | 1.57E-48 | -1.69E-46 |
| MS.gene058084 | MS.gene82119 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene82119 | 0.807475 | 4.96E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene82119 | 0.811268 | 7.62E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene82119 | 0.821571 | 3.76E-53 | -1.69E-46 |
| MS.gene059249 | MS.gene82119 | 0.806538 | 7.84E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene82119 | 0.822283 | 2.57E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene82119 | 0.803413 | 3.53E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene82119 | 0.818726 | 1.69E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene82119 | 0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene82119 | 0.817276 | 3.59E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82119.t1 | MTR_5g026590 | 96.491 | 171 | 6 | 0 | 1 | 171 | 515 | 685 | 2.80e-109 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82119.t1 | AT1G31360 | 56.250 | 176 | 67 | 2 | 1 | 170 | 407 | 578 | 1.01e-59 | 195 |
| MS.gene82119.t1 | AT1G31360 | 56.250 | 176 | 67 | 2 | 1 | 170 | 532 | 703 | 4.72e-59 | 195 |
| MS.gene82119.t1 | AT1G31360 | 56.250 | 176 | 67 | 2 | 1 | 170 | 566 | 737 | 6.93e-59 | 195 |
| MS.gene82119.t1 | AT1G31360 | 61.607 | 112 | 39 | 1 | 1 | 112 | 532 | 639 | 3.13e-39 | 140 |
Find 28 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCTCTTCCAGTGAGTT+TGG | 0.267298 | 5.2:+17349784 | None:intergenic |
| GTGCAGTTGGAGAAAGTAAT+TGG | 0.274668 | 5.2:-17349078 | MS.gene82119:intron |
| CCAAAGCACGCTCCAGTAAA+AGG | 0.284767 | 5.2:+17351286 | None:intergenic |
| AATAAGAACAAGGTTCTTCT+TGG | 0.307971 | 5.2:+17348939 | None:intergenic |
| AAACGCAGCCTCGGGTCATC+TGG | 0.375770 | 5.2:-17349919 | MS.gene82119:CDS |
| TTCATCAGTCGGCTCAAAAT+CGG | 0.397305 | 5.2:+17348999 | None:intergenic |
| CAGCCTCGGGTCATCTGGCT+TGG | 0.413431 | 5.2:-17349914 | MS.gene82119:CDS |
| TGCAAAATTTGCTTCGCCAA+TGG | 0.440678 | 5.2:+17350298 | None:intergenic |
| AAATTGAAGACGGAAAAGTA+TGG | 0.475427 | 5.2:-17349054 | MS.gene82119:CDS |
| AAAGAACTTTCTTCCACTCA+TGG | 0.477688 | 5.2:-17349868 | MS.gene82119:CDS |
| AAAACCAAACTCACTGGAAG+AGG | 0.507726 | 5.2:-17349788 | MS.gene82119:intron |
| TTACATTACTGTGGGGCCAT+TGG | 0.508759 | 5.2:-17350314 | MS.gene82119:CDS |
| TAAGATTGAAACGCAGCCTC+GGG | 0.520222 | 5.2:-17349927 | MS.gene82119:CDS |
| ATGATGGTAGAGCTGCAAAA+AGG | 0.524588 | 5.2:-17348969 | MS.gene82119:CDS |
| ACAAATGCTTACATTACTGT+GGG | 0.528063 | 5.2:-17350322 | MS.gene82119:CDS |
| GTAAGATTGAAACGCAGCCT+CGG | 0.535718 | 5.2:-17349928 | MS.gene82119:CDS |
| TACAAATGCTTACATTACTG+TGG | 0.538641 | 5.2:-17350323 | MS.gene82119:CDS |
| TCATTTACTTGTTCATCAGT+CGG | 0.558425 | 5.2:+17348988 | None:intergenic |
| ACTGATGAACAAGTAAATGA+TGG | 0.558662 | 5.2:-17348985 | MS.gene82119:CDS |
| TGAGTAGACAAGACAGAGTG+TGG | 0.573006 | 5.2:+17349835 | None:intergenic |
| AGTAATTGGAAAATTGAAGA+CGG | 0.579666 | 5.2:-17349064 | MS.gene82119:CDS |
| CACTACTCTCAATAAGAACA+AGG | 0.584987 | 5.2:+17348929 | None:intergenic |
| TGGGAGTATTCCTCCATGAG+TGG | 0.623965 | 5.2:+17349855 | None:intergenic |
| GAAGCTTGAGATTTCTACAG+AGG | 0.633669 | 5.2:-17349968 | MS.gene82119:CDS |
| GAACTTTCTTCCACTCATGG+AGG | 0.642311 | 5.2:-17349865 | MS.gene82119:CDS |
| GAGTAGACAAGACAGAGTGT+GGG | 0.645165 | 5.2:+17349836 | None:intergenic |
| GCTCCAAGCCAGATGACCCG+AGG | 0.687823 | 5.2:+17349911 | None:intergenic |
| CAAATGCTTACATTACTGTG+GGG | 0.745077 | 5.2:-17350321 | MS.gene82119:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTATAAATTTAT+AGG | - | chr5.2:17350893-17350912 | MS.gene82119:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTTTA+CGG | + | chr5.2:17349159-17349178 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAAACTTG+AGG | - | chr5.2:17349176-17349195 | MS.gene82119:intron | 10.0% |
| !!! | CTTTTGTAAATAAATTAAAA+TGG | + | chr5.2:17349629-17349648 | None:intergenic | 10.0% |
| !! | AAATGAAATATAGAAAAACA+TGG | + | chr5.2:17349537-17349556 | None:intergenic | 15.0% |
| !! | TAAATTTATAGGATAATACA+AGG | - | chr5.2:17350904-17350923 | MS.gene82119:intron | 15.0% |
| !! | TTAAAGAAAAAATAATCCTT+TGG | - | chr5.2:17350639-17350658 | MS.gene82119:intron | 15.0% |
| !!! | ATTTAAAGACAATTTTTTCT+TGG | - | chr5.2:17349841-17349860 | MS.gene82119:CDS | 15.0% |
| !!! | ATTTAATATTTCCATTTTAG+TGG | - | chr5.2:17349815-17349834 | MS.gene82119:CDS | 15.0% |
| !!! | ATTTTCAATTGTTAGTTTAT+TGG | - | chr5.2:17349221-17349240 | MS.gene82119:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr5.2:17350721-17350740 | MS.gene82119:intron | 15.0% |
| !!! | TCAAATCCTTTTAAAATATA+GGG | - | chr5.2:17349697-17349716 | MS.gene82119:intron | 15.0% |
| !!! | TTCAAATCCTTTTAAAATAT+AGG | - | chr5.2:17349696-17349715 | MS.gene82119:intron | 15.0% |
| !!! | TTCTTATTTAAAGTATTTCA+TGG | + | chr5.2:17350061-17350080 | None:intergenic | 15.0% |
| !!! | TTTAATATTTCCATTTTAGT+GGG | - | chr5.2:17349816-17349835 | MS.gene82119:CDS | 15.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | chr5.2:17350605-17350624 | MS.gene82119:intron | 20.0% |
| !! | AATAATTAATTCAGAAGTTC+TGG | - | chr5.2:17349496-17349515 | MS.gene82119:intron | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | chr5.2:17350606-17350625 | None:intergenic | 20.0% |
| !! | ACAATAATATATAGTAATGC+AGG | - | chr5.2:17350869-17350888 | MS.gene82119:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr5.2:17350681-17350700 | MS.gene82119:intron | 20.0% |
| !! | TCCATTAAGCTAATTTATTA+TGG | - | chr5.2:17349977-17349996 | MS.gene82119:CDS | 20.0% |
| !! | TTGTCTTAATATTGAAAGTT+GGG | - | chr5.2:17348968-17348987 | MS.gene82119:CDS | 20.0% |
| !! | TTTGTCTTAATATTGAAAGT+TGG | - | chr5.2:17348967-17348986 | MS.gene82119:CDS | 20.0% |
| !!! | AAATTTAAAACTACAACTGA+TGG | + | chr5.2:17349762-17349781 | None:intergenic | 20.0% |
| !!! | CTAAATTTTTTATTGCATTG+AGG | + | chr5.2:17349663-17349682 | None:intergenic | 20.0% |
| !!! | GTATTACCCTATATTTTAAA+AGG | + | chr5.2:17349706-17349725 | None:intergenic | 20.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | + | chr5.2:17350615-17350634 | None:intergenic | 25.0% |
| ! | AAGGCATAAAATGATTACAA+AGG | - | chr5.2:17350923-17350942 | MS.gene82119:intron | 25.0% |
| ! | ACACACATATATTTGAAGAA+TGG | - | chr5.2:17349084-17349103 | MS.gene82119:intron | 25.0% |
| ! | ACCAAAAAAAAAATCCAAAC+AGG | + | chr5.2:17350216-17350235 | None:intergenic | 25.0% |
| ! | AGTAATTGGAAAATTGAAGA+CGG | - | chr5.2:17351157-17351176 | MS.gene82119:intron | 25.0% |
| ! | ATACACTACTAGTATAAACA+AGG | - | chr5.2:17351051-17351070 | MS.gene82119:intron | 25.0% |
| ! | CACACATATATTTGAAGAAT+GGG | - | chr5.2:17349085-17349104 | MS.gene82119:intron | 25.0% |
| ! | TACACTACTAGTATAAACAA+GGG | - | chr5.2:17351052-17351071 | MS.gene82119:intron | 25.0% |
| ! | TTGAATGAAAAAACATGACT+CGG | + | chr5.2:17350038-17350057 | None:intergenic | 25.0% |
| !! | ATTTTCCATACCAAAAACAA+AGG | - | chr5.2:17349310-17349329 | MS.gene82119:intron | 25.0% |
| !! | GCCATAATAAATTAGCTTAA+TGG | + | chr5.2:17349981-17350000 | None:intergenic | 25.0% |
| !!! | CAGTTGTAGTTTTAAATTTC+TGG | - | chr5.2:17349763-17349782 | MS.gene82119:intron | 25.0% |
| !!! | TCATGTACTTTTAAGTTTTG+TGG | - | chr5.2:17350466-17350485 | MS.gene82119:intron | 25.0% |
| !!! | TGGATTTTTTTTTTGGTGTA+GGG | - | chr5.2:17350219-17350238 | MS.gene82119:intron | 25.0% |
| !!! | TTGGATTTTTTTTTTGGTGT+AGG | - | chr5.2:17350218-17350237 | MS.gene82119:intron | 25.0% |
| AAATTGAAGACGGAAAAGTA+TGG | - | chr5.2:17351167-17351186 | MS.gene82119:intron | 30.0% | |
| AATAAGAACAAGGTTCTTCT+TGG | + | chr5.2:17351285-17351304 | None:intergenic | 30.0% | |
| ACAAATGCTTACATTACTGT+GGG | - | chr5.2:17349899-17349918 | MS.gene82119:CDS | 30.0% | |
| ACTGATGAACAAGTAAATGA+TGG | - | chr5.2:17351236-17351255 | MS.gene82119:intron | 30.0% | |
| AGAAACTAGCTCAATGAATT+AGG | - | chr5.2:17350077-17350096 | MS.gene82119:intron | 30.0% | |
| AGCCTCAAAAGTTGTTTAAA+GGG | + | chr5.2:17349135-17349154 | None:intergenic | 30.0% | |
| ATCTGGATTAAAGCAATAGA+AGG | + | chr5.2:17351105-17351124 | None:intergenic | 30.0% | |
| ATTGCACACAAATTAAGGAA+TGG | - | chr5.2:17350549-17350568 | MS.gene82119:intron | 30.0% | |
| CTTTAAATCACCCACTAAAA+TGG | + | chr5.2:17349829-17349848 | None:intergenic | 30.0% | |
| GATTGTCAAAAGCAACTTTA+AGG | - | chr5.2:17350805-17350824 | MS.gene82119:intron | 30.0% | |
| TACAAATGCTTACATTACTG+TGG | - | chr5.2:17349898-17349917 | MS.gene82119:CDS | 30.0% | |
| TAGCCTCAAAAGTTGTTTAA+AGG | + | chr5.2:17349136-17349155 | None:intergenic | 30.0% | |
| TCATTTACTTGTTCATCAGT+CGG | + | chr5.2:17351236-17351255 | None:intergenic | 30.0% | |
| TCTGGATTAAAGCAATAGAA+GGG | + | chr5.2:17351104-17351123 | None:intergenic | 30.0% | |
| TTTAAATCATGCAGTGTAAG+TGG | + | chr5.2:17349341-17349360 | None:intergenic | 30.0% | |
| ! | GTTAGTTTATTGGTCTCTTA+TGG | - | chr5.2:17349231-17349250 | MS.gene82119:intron | 30.0% |
| ! | TATTAAATTTTTGCACTGCC+AGG | + | chr5.2:17349803-17349822 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5.2:17350747-17350766 | MS.gene82119:intron | 30.0% |
| !! | TTCCTTAATTTGTGTGCAAT+TGG | + | chr5.2:17350549-17350568 | None:intergenic | 30.0% |
| !! | TTTTTCCGACTCTAATTTGT+CGG | - | chr5.2:17350104-17350123 | MS.gene82119:intron | 30.0% |
| !!! | AACTGTACTTTGTTTTGCAT+TGG | - | chr5.2:17349736-17349755 | MS.gene82119:intron | 30.0% |
| !!! | ACTTTTAAGTTTTGTGGTGA+TGG | - | chr5.2:17350472-17350491 | MS.gene82119:intron | 30.0% |
| !!! | GCCTGTTTGGATTTTTTTTT+TGG | - | chr5.2:17350212-17350231 | MS.gene82119:intron | 30.0% |
| AAAATTTGCAAACTGAGTGC+AGG | + | chr5.2:17350159-17350178 | None:intergenic | 35.0% | |
| AAAGAACTTTCTTCCACTCA+TGG | - | chr5.2:17350353-17350372 | MS.gene82119:CDS | 35.0% | |
| AACACGGAAAACTTAGTATC+TGG | + | chr5.2:17351122-17351141 | None:intergenic | 35.0% | |
| AAGAACCGACAAATTAGAGT+CGG | + | chr5.2:17350112-17350131 | None:intergenic | 35.0% | |
| AAGTCTAAATTTGCCAGACA+AGG | - | chr5.2:17349013-17349032 | MS.gene82119:CDS | 35.0% | |
| AGACAACTTGAAAGTCATTG+GGG | - | chr5.2:17349277-17349296 | MS.gene82119:intron | 35.0% | |
| AGCCAATTGCACACAAATTA+AGG | - | chr5.2:17350544-17350563 | MS.gene82119:intron | 35.0% | |
| CAAATGCTTACATTACTGTG+GGG | - | chr5.2:17349900-17349919 | MS.gene82119:CDS | 35.0% | |
| CAATTGTACACTACTTCCAA+AGG | + | chr5.2:17350658-17350677 | None:intergenic | 35.0% | |
| CACAATCATAATTGCAACAC+TGG | + | chr5.2:17349580-17349599 | None:intergenic | 35.0% | |
| CACTACTCTCAATAAGAACA+AGG | + | chr5.2:17351295-17351314 | None:intergenic | 35.0% | |
| CAGACAACTTGAAAGTCATT+GGG | - | chr5.2:17349276-17349295 | MS.gene82119:intron | 35.0% | |
| CTTGAAATTGTAGCCAATGT+TGG | + | chr5.2:17349043-17349062 | None:intergenic | 35.0% | |
| TCAGACAACTTGAAAGTCAT+TGG | - | chr5.2:17349275-17349294 | MS.gene82119:intron | 35.0% | |
| TTCTCAAAAACCAAACTCAC+TGG | - | chr5.2:17350427-17350446 | MS.gene82119:intron | 35.0% | |
| ! | AGCCCTTTAAACAACTTTTG+AGG | - | chr5.2:17349130-17349149 | MS.gene82119:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr5.2:17350523-17350542 | None:intergenic | 35.0% |
| !!! | CATTGCCTTTGTTTTTGGTA+TGG | + | chr5.2:17349318-17349337 | None:intergenic | 35.0% |
| AAAACCAAACTCACTGGAAG+AGG | - | chr5.2:17350433-17350452 | MS.gene82119:intron | 40.0% | |
| ATGATGGTAGAGCTGCAAAA+AGG | - | chr5.2:17351252-17351271 | MS.gene82119:intron | 40.0% | |
| CAATGTTGGATTACCTTGTC+TGG | + | chr5.2:17349029-17349048 | None:intergenic | 40.0% | |
| CAGACAAGGTAATCCAACAT+TGG | - | chr5.2:17349027-17349046 | MS.gene82119:CDS | 40.0% | |
| GAAGCTTGAGATTTCTACAG+AGG | - | chr5.2:17350253-17350272 | MS.gene82119:intron | 40.0% | |
| GTGCAGTTGGAGAAAGTAAT+TGG | - | chr5.2:17351143-17351162 | MS.gene82119:intron | 40.0% | |
| TTCCGAGAAGTTGAGTTTCA+CGG | + | chr5.2:17349387-17349406 | None:intergenic | 40.0% | |
| TTTCTCCAACTGCACAAACA+CGG | + | chr5.2:17351138-17351157 | None:intergenic | 40.0% | |
| ! | GCTCATCTTACACCTTTTAC+TGG | - | chr5.2:17348923-17348942 | MS.gene82119:CDS | 40.0% |
| ! | TGCAAAATTTGCTTCGCCAA+TGG | + | chr5.2:17349926-17349945 | None:intergenic | 40.0% |
| ! | TTCATCAGTCGGCTCAAAAT+CGG | + | chr5.2:17351225-17351244 | None:intergenic | 40.0% |
| ! | TTGGCGAAGCAAATTTTGCA+AGG | - | chr5.2:17349926-17349945 | MS.gene82119:CDS | 40.0% |
| !!! | AGTGGCATTGCCTTTGTTTT+TGG | + | chr5.2:17349323-17349342 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5.2:17350751-17350770 | MS.gene82119:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5.2:17350770-17350751 | None:intergenic | 40.0% |
| ACGGCTGAACAAGCTTAGAA+AGG | + | chr5.2:17349368-17349387 | None:intergenic | 45.0% | |
| AGCCGTGAAACTCAACTTCT+CGG | - | chr5.2:17349382-17349401 | MS.gene82119:intron | 45.0% | |
| CATTTCATCTCCTGCACACA+CGG | - | chr5.2:17349552-17349571 | MS.gene82119:intron | 45.0% | |
| GAACTTTCTTCCACTCATGG+AGG | - | chr5.2:17350356-17350375 | MS.gene82119:intron | 45.0% | |
| GAGTAGACAAGACAGAGTGT+GGG | + | chr5.2:17350388-17350407 | None:intergenic | 45.0% | |
| GTAAGATTGAAACGCAGCCT+CGG | - | chr5.2:17350293-17350312 | MS.gene82119:intron | 45.0% | |
| TAAGATTGAAACGCAGCCTC+GGG | - | chr5.2:17350294-17350313 | MS.gene82119:intron | 45.0% | |
| TGAGTAGACAAGACAGAGTG+TGG | + | chr5.2:17350389-17350408 | None:intergenic | 45.0% | |
| TTACATTACTGTGGGGCCAT+TGG | - | chr5.2:17349907-17349926 | MS.gene82119:CDS | 45.0% | |
| ! | CTGGACATTTTGAGCTTACC+TGG | - | chr5.2:17349782-17349801 | MS.gene82119:intron | 45.0% |
| ! | GTTTTCCGTGTTTGTGCAGT+TGG | - | chr5.2:17351130-17351149 | MS.gene82119:intron | 45.0% |
| !! | CTTTCTCTGAGATGCTAGTG+TGG | - | chr5.2:17350129-17350148 | MS.gene82119:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5.2:17350750-17350769 | MS.gene82119:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5.2:17350769-17350750 | None:intergenic | 45.0% |
| ACCAACTGCTTGTGCCTGTT+TGG | - | chr5.2:17350199-17350218 | MS.gene82119:intron | 50.0% | |
| CCAAAGCACGCTCCAGTAAA+AGG | + | chr5.2:17348938-17348957 | None:intergenic | 50.0% | |
| CTTGCCTCTTCCAGTGAGTT+TGG | + | chr5.2:17350440-17350459 | None:intergenic | 50.0% | |
| TCCAAACAGGCACAAGCAGT+TGG | + | chr5.2:17350203-17350222 | None:intergenic | 50.0% | |
| ! | CCTTTTACTGGAGCGTGCTT+TGG | - | chr5.2:17348935-17348954 | MS.gene82119:CDS | 50.0% |
| !! | TGGGAGTATTCCTCCATGAG+TGG | + | chr5.2:17350369-17350388 | None:intergenic | 50.0% |
| GCTGCAGCTTGGACACTACA+CGG | - | chr5.2:17350839-17350858 | MS.gene82119:intron | 55.0% | |
| GTGTAGTGTCCAAGCTGCAG+CGG | + | chr5.2:17350840-17350859 | None:intergenic | 55.0% | |
| TGTGCATAACCGCTGCAGCT+TGG | - | chr5.2:17350828-17350847 | MS.gene82119:intron | 55.0% | |
| ! | GTCTGAAACGCAGCTTGCTC+TGG | + | chr5.2:17349261-17349280 | None:intergenic | 55.0% |
| !! | AACACTGGTTCCGTGTGTGC+AGG | + | chr5.2:17349565-17349584 | None:intergenic | 55.0% |
| AAACGCAGCCTCGGGTCATC+TGG | - | chr5.2:17350302-17350321 | MS.gene82119:CDS | 60.0% | |
| CAGCCTCGGGTCATCTGGCT+TGG | - | chr5.2:17350307-17350326 | MS.gene82119:CDS | 65.0% | |
| GCTCCAAGCCAGATGACCCG+AGG | + | chr5.2:17350313-17350332 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17348915 | 17351328 | 17348915 | ID=MS.gene82119 |
| chr5.2 | mRNA | 17348915 | 17351328 | 17348915 | ID=MS.gene82119.t1;Parent=MS.gene82119 |
| chr5.2 | exon | 17351287 | 17351328 | 17351287 | ID=MS.gene82119.t1.exon1;Parent=MS.gene82119.t1 |
| chr5.2 | CDS | 17351287 | 17351328 | 17351287 | ID=cds.MS.gene82119.t1;Parent=MS.gene82119.t1 |
| chr5.2 | exon | 17350296 | 17350374 | 17350296 | ID=MS.gene82119.t1.exon2;Parent=MS.gene82119.t1 |
| chr5.2 | CDS | 17350296 | 17350374 | 17350296 | ID=cds.MS.gene82119.t1;Parent=MS.gene82119.t1 |
| chr5.2 | exon | 17349789 | 17350003 | 17349789 | ID=MS.gene82119.t1.exon3;Parent=MS.gene82119.t1 |
| chr5.2 | CDS | 17349789 | 17350003 | 17349789 | ID=cds.MS.gene82119.t1;Parent=MS.gene82119.t1 |
| chr5.2 | exon | 17348915 | 17349094 | 17348915 | ID=MS.gene82119.t1.exon4;Parent=MS.gene82119.t1 |
| chr5.2 | CDS | 17348915 | 17349094 | 17348915 | ID=cds.MS.gene82119.t1;Parent=MS.gene82119.t1 |
| Gene Sequence |
| Protein sequence |
