Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82214.t1 | XP_003605293.2 | 93.5 | 124 | 7 | 1 | 122 | 244 | 1 | 124 | 1.90E-58 | 236.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82214.t1 | Q43019 | 59.0 | 117 | 42 | 4 | 130 | 244 | 9 | 121 | 2.1e-29 | 131.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82214.t1 | G7JIB4 | 93.5 | 124 | 7 | 1 | 122 | 244 | 1 | 124 | 1.4e-58 | 236.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050020 | MS.gene82214 | 0.857878 | 1.21E-62 | -1.69E-46 |
MS.gene050206 | MS.gene82214 | 0.806344 | 8.61E-50 | -1.69E-46 |
MS.gene050563 | MS.gene82214 | 0.823188 | 1.58E-53 | -1.69E-46 |
MS.gene050584 | MS.gene82214 | 0.875302 | 3.43E-68 | -1.69E-46 |
MS.gene050585 | MS.gene82214 | 0.850449 | 1.69E-60 | -1.69E-46 |
MS.gene050587 | MS.gene82214 | 0.836018 | 1.20E-56 | -1.69E-46 |
MS.gene050807 | MS.gene82214 | 0.820134 | 8.05E-53 | -1.69E-46 |
MS.gene05143 | MS.gene82214 | 0.832768 | 7.83E-56 | -1.69E-46 |
MS.gene051626 | MS.gene82214 | 0.845518 | 3.86E-59 | -1.69E-46 |
MS.gene051789 | MS.gene82214 | 0.894085 | 3.43E-75 | -1.69E-46 |
MS.gene052142 | MS.gene82214 | 0.87013 | 1.84E-66 | -1.69E-46 |
MS.gene052698 | MS.gene82214 | 0.83633 | 9.97E-57 | -1.69E-46 |
MS.gene052967 | MS.gene82214 | 0.81419 | 1.75E-51 | -1.69E-46 |
MS.gene053074 | MS.gene82214 | 0.874444 | 6.72E-68 | -1.69E-46 |
MS.gene053204 | MS.gene82214 | 0.843072 | 1.75E-58 | -1.69E-46 |
MS.gene053383 | MS.gene82214 | 0.8405 | 8.38E-58 | -1.69E-46 |
MS.gene053563 | MS.gene82214 | 0.859147 | 5.06E-63 | -1.69E-46 |
MS.gene05456 | MS.gene82214 | 0.877017 | 8.80E-69 | -1.69E-46 |
MS.gene054596 | MS.gene82214 | 0.839526 | 1.50E-57 | -1.69E-46 |
MS.gene055207 | MS.gene82214 | 0.831774 | 1.38E-55 | -1.69E-46 |
MS.gene055359 | MS.gene82214 | 0.845239 | 4.60E-59 | -1.69E-46 |
MS.gene059006 | MS.gene82214 | 0.897071 | 2.01E-76 | -1.69E-46 |
MS.gene059768 | MS.gene82214 | 0.814301 | 1.65E-51 | -1.69E-46 |
MS.gene060513 | MS.gene82214 | 0.801393 | 9.20E-49 | -1.69E-46 |
MS.gene060691 | MS.gene82214 | 0.831205 | 1.90E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82214.t1 | MTR_4g028180 | 93.548 | 124 | 7 | 1 | 122 | 244 | 1 | 124 | 9.78e-78 | 231 |
MS.gene82214.t1 | MTR_4g028180 | 35.200 | 125 | 76 | 2 | 1 | 120 | 1 | 125 | 5.72e-20 | 83.6 |
MS.gene82214.t1 | MTR_4g028190 | 85.124 | 121 | 18 | 0 | 1 | 121 | 1 | 121 | 2.29e-69 | 210 |
MS.gene82214.t1 | MTR_4g028190 | 37.302 | 126 | 75 | 1 | 125 | 250 | 4 | 125 | 7.57e-24 | 93.6 |
MS.gene82214.t1 | MTR_7g072930 | 47.107 | 121 | 62 | 2 | 1 | 121 | 1 | 119 | 1.34e-31 | 114 |
MS.gene82214.t1 | MTR_7g072930 | 41.667 | 120 | 65 | 2 | 125 | 244 | 3 | 117 | 2.51e-24 | 95.9 |
MS.gene82214.t1 | MTR_7g073170 | 47.500 | 120 | 57 | 2 | 125 | 244 | 3 | 116 | 6.08e-31 | 112 |
MS.gene82214.t1 | MTR_7g073170 | 45.000 | 120 | 63 | 3 | 1 | 120 | 1 | 117 | 5.34e-29 | 107 |
MS.gene82214.t1 | MTR_7g073150 | 43.802 | 121 | 66 | 2 | 1 | 121 | 1 | 119 | 1.33e-29 | 108 |
MS.gene82214.t1 | MTR_7g073150 | 44.167 | 120 | 62 | 2 | 125 | 244 | 3 | 117 | 3.50e-28 | 105 |
MS.gene82214.t1 | MTR_4g027800 | 44.828 | 116 | 62 | 2 | 5 | 120 | 1 | 114 | 4.54e-27 | 101 |
MS.gene82214.t1 | MTR_4g027800 | 42.478 | 113 | 59 | 3 | 130 | 242 | 5 | 111 | 2.26e-23 | 92.0 |
MS.gene82214.t1 | MTR_4g027840 | 45.378 | 119 | 63 | 2 | 5 | 123 | 1 | 117 | 5.20e-27 | 102 |
MS.gene82214.t1 | MTR_4g027840 | 38.889 | 126 | 71 | 3 | 130 | 255 | 5 | 124 | 6.63e-23 | 91.7 |
MS.gene82214.t1 | MTR_4g428370 | 46.903 | 113 | 54 | 3 | 130 | 242 | 62 | 168 | 5.40e-26 | 100 |
MS.gene82214.t1 | MTR_4g428370 | 43.966 | 116 | 63 | 2 | 5 | 120 | 58 | 171 | 1.22e-25 | 99.8 |
MS.gene82214.t1 | MTR_7g072830 | 39.669 | 121 | 70 | 3 | 1 | 120 | 1 | 119 | 5.60e-25 | 96.7 |
MS.gene82214.t1 | MTR_7g072830 | 38.017 | 121 | 69 | 3 | 125 | 244 | 3 | 118 | 4.31e-20 | 83.6 |
MS.gene82214.t1 | MTR_7g073120 | 38.889 | 126 | 75 | 2 | 1 | 125 | 1 | 125 | 2.51e-24 | 95.9 |
MS.gene82214.t1 | MTR_7g073120 | 33.333 | 156 | 90 | 5 | 122 | 269 | 1 | 150 | 1.81e-16 | 75.1 |
MS.gene82214.t1 | MTR_7g072980 | 45.902 | 122 | 63 | 3 | 1 | 121 | 1 | 120 | 2.13e-23 | 92.8 |
MS.gene82214.t1 | MTR_7g072980 | 35.606 | 132 | 78 | 4 | 125 | 254 | 3 | 129 | 5.84e-17 | 75.9 |
MS.gene82214.t1 | MTR_7g072900 | 42.017 | 119 | 67 | 2 | 1 | 119 | 1 | 117 | 6.96e-23 | 90.9 |
MS.gene82214.t1 | MTR_7g072900 | 41.176 | 119 | 65 | 2 | 125 | 243 | 3 | 116 | 7.06e-21 | 85.5 |
MS.gene82214.t1 | MTR_7g073130 | 41.322 | 121 | 68 | 3 | 1 | 121 | 1 | 118 | 1.12e-22 | 90.9 |
MS.gene82214.t1 | MTR_7g073130 | 40.164 | 122 | 63 | 3 | 125 | 244 | 3 | 116 | 3.22e-19 | 81.6 |
MS.gene82214.t1 | MTR_7g072730 | 38.028 | 142 | 76 | 4 | 1 | 132 | 1 | 140 | 4.32e-22 | 90.1 |
MS.gene82214.t1 | MTR_7g072730 | 36.364 | 121 | 71 | 3 | 125 | 244 | 3 | 118 | 1.96e-19 | 83.2 |
MS.gene82214.t1 | MTR_7g072993 | 42.276 | 123 | 67 | 3 | 1 | 121 | 1 | 121 | 7.21e-22 | 89.0 |
MS.gene82214.t1 | MTR_7g072993 | 42.105 | 133 | 69 | 4 | 125 | 254 | 3 | 130 | 4.07e-20 | 84.3 |
MS.gene82214.t1 | MTR_4g029350 | 45.794 | 107 | 51 | 3 | 138 | 244 | 15 | 114 | 1.25e-21 | 87.8 |
MS.gene82214.t1 | MTR_4g029350 | 37.931 | 116 | 71 | 1 | 5 | 120 | 1 | 115 | 9.79e-20 | 82.8 |
MS.gene82214.t1 | MTR_2g062600 | 38.983 | 118 | 65 | 3 | 127 | 243 | 1 | 112 | 1.94e-21 | 87.0 |
MS.gene82214.t1 | MTR_2g062600 | 32.456 | 114 | 73 | 2 | 7 | 120 | 5 | 114 | 3.88e-16 | 72.8 |
MS.gene82214.t1 | MTR_4g029210 | 41.071 | 112 | 55 | 4 | 131 | 242 | 11 | 111 | 1.69e-20 | 84.7 |
MS.gene82214.t1 | MTR_4g029210 | 40.000 | 110 | 64 | 2 | 8 | 117 | 4 | 111 | 1.17e-19 | 82.4 |
MS.gene82214.t1 | MTR_4g029390 | 41.667 | 120 | 63 | 3 | 125 | 244 | 2 | 114 | 2.36e-20 | 84.3 |
MS.gene82214.t1 | MTR_4g029390 | 38.793 | 116 | 70 | 1 | 5 | 120 | 1 | 115 | 4.79e-19 | 80.9 |
MS.gene82214.t1 | MTR_1g040335 | 43.802 | 121 | 61 | 3 | 125 | 244 | 3 | 117 | 2.76e-20 | 84.0 |
MS.gene82214.t1 | MTR_1g040335 | 39.669 | 121 | 69 | 4 | 1 | 120 | 1 | 118 | 1.00e-17 | 77.4 |
MS.gene82214.t1 | MTR_7g072960 | 34.507 | 142 | 77 | 3 | 1 | 142 | 1 | 126 | 2.67e-19 | 82.0 |
MS.gene82214.t1 | MTR_7g072960 | 38.017 | 121 | 54 | 2 | 127 | 244 | 1 | 103 | 1.44e-17 | 77.4 |
MS.gene82214.t1 | MTR_7g451500 | 36.893 | 103 | 60 | 1 | 18 | 120 | 1 | 98 | 3.81e-19 | 80.5 |
MS.gene82214.t1 | MTR_7g451500 | 31.522 | 92 | 59 | 1 | 152 | 243 | 9 | 96 | 1.78e-13 | 65.5 |
MS.gene82214.t1 | MTR_7g073060 | 40.000 | 120 | 70 | 2 | 1 | 120 | 1 | 118 | 6.83e-19 | 80.5 |
MS.gene82214.t1 | MTR_7g073060 | 35.833 | 120 | 72 | 2 | 125 | 244 | 3 | 117 | 4.28e-17 | 75.5 |
MS.gene82214.t1 | MTR_7g073100 | 38.017 | 121 | 73 | 2 | 1 | 121 | 1 | 119 | 7.55e-19 | 81.3 |
MS.gene82214.t1 | MTR_7g073100 | 35.833 | 120 | 72 | 2 | 125 | 244 | 3 | 117 | 1.75e-16 | 74.7 |
MS.gene82214.t1 | MTR_7g072810 | 38.843 | 121 | 62 | 4 | 125 | 244 | 3 | 112 | 1.33e-16 | 74.3 |
MS.gene82214.t1 | MTR_7g072810 | 38.095 | 126 | 69 | 4 | 1 | 125 | 1 | 118 | 1.54e-16 | 74.3 |
MS.gene82214.t1 | MTR_7g073030 | 33.613 | 119 | 78 | 1 | 3 | 121 | 2 | 119 | 1.23e-15 | 72.8 |
MS.gene82214.t1 | MTR_7g073030 | 35.000 | 120 | 73 | 2 | 125 | 244 | 3 | 117 | 6.28e-14 | 68.2 |
MS.gene82214.t1 | MTR_7g072760 | 36.885 | 122 | 71 | 3 | 125 | 244 | 3 | 120 | 9.40e-15 | 69.3 |
MS.gene82214.t1 | MTR_7g072760 | 36.885 | 122 | 74 | 3 | 1 | 120 | 1 | 121 | 1.63e-13 | 66.2 |
MS.gene82214.t1 | MTR_1g040330 | 38.843 | 121 | 70 | 4 | 1 | 120 | 1 | 118 | 3.06e-13 | 65.1 |
MS.gene82214.t1 | MTR_1g040330 | 37.190 | 121 | 69 | 3 | 125 | 244 | 3 | 117 | 3.15e-11 | 59.7 |
MS.gene82214.t1 | MTR_3g467100 | 35.052 | 97 | 56 | 3 | 149 | 244 | 22 | 112 | 1.67e-12 | 63.2 |
MS.gene82214.t1 | MTR_3g467100 | 30.357 | 112 | 77 | 1 | 9 | 120 | 3 | 113 | 8.94e-11 | 58.5 |
MS.gene82214.t1 | MTR_3g046515 | 28.455 | 123 | 82 | 2 | 123 | 244 | 3 | 120 | 4.21e-12 | 62.0 |
MS.gene82214.t1 | MTR_3g056640 | 32.143 | 112 | 68 | 3 | 16 | 120 | 11 | 121 | 2.19e-11 | 60.1 |
MS.gene82214.t1 | MTR_3g056640 | 31.304 | 115 | 73 | 2 | 131 | 244 | 11 | 120 | 2.23e-11 | 60.1 |
MS.gene82214.t1 | MTR_3g046530 | 27.200 | 125 | 85 | 2 | 121 | 244 | 1 | 120 | 4.75e-11 | 59.3 |
MS.gene82214.t1 | MTR_3g046540 | 27.642 | 123 | 83 | 2 | 123 | 244 | 3 | 120 | 5.10e-11 | 59.3 |
MS.gene82214.t1 | MTR_7g072987 | 44.444 | 54 | 30 | 0 | 40 | 93 | 67 | 120 | 9.03e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82214.t1 | AT2G15050 | 50.000 | 118 | 53 | 3 | 130 | 244 | 6 | 120 | 6.99e-30 | 109 |
MS.gene82214.t1 | AT2G15050 | 44.444 | 108 | 54 | 4 | 7 | 110 | 4 | 109 | 2.87e-21 | 87.0 |
MS.gene82214.t1 | AT2G15050 | 50.000 | 118 | 53 | 3 | 130 | 244 | 6 | 120 | 9.91e-30 | 108 |
MS.gene82214.t1 | AT2G15050 | 44.444 | 108 | 54 | 4 | 7 | 110 | 4 | 109 | 3.95e-21 | 86.7 |
MS.gene82214.t1 | AT2G15050 | 50.450 | 111 | 49 | 3 | 130 | 237 | 6 | 113 | 8.24e-28 | 103 |
MS.gene82214.t1 | AT2G15050 | 44.444 | 108 | 54 | 4 | 7 | 110 | 4 | 109 | 2.40e-21 | 87.0 |
MS.gene82214.t1 | AT5G01870 | 46.018 | 113 | 55 | 4 | 132 | 244 | 8 | 114 | 1.11e-26 | 100 |
MS.gene82214.t1 | AT5G01870 | 37.288 | 118 | 68 | 3 | 5 | 120 | 2 | 115 | 4.35e-21 | 86.3 |
MS.gene82214.t1 | AT2G38540 | 42.609 | 115 | 62 | 2 | 130 | 244 | 6 | 116 | 1.47e-26 | 100 |
MS.gene82214.t1 | AT2G38540 | 45.217 | 115 | 61 | 2 | 7 | 120 | 4 | 117 | 5.35e-24 | 94.0 |
MS.gene82214.t1 | AT3G08770 | 49.495 | 99 | 46 | 3 | 146 | 244 | 17 | 111 | 2.36e-24 | 94.7 |
MS.gene82214.t1 | AT3G08770 | 47.423 | 97 | 42 | 4 | 29 | 120 | 20 | 112 | 1.01e-18 | 79.7 |
MS.gene82214.t1 | AT3G08770 | 49.495 | 99 | 46 | 3 | 146 | 244 | 17 | 111 | 2.38e-24 | 94.7 |
MS.gene82214.t1 | AT3G08770 | 47.917 | 96 | 41 | 4 | 29 | 119 | 20 | 111 | 1.79e-18 | 79.3 |
MS.gene82214.t1 | AT5G59320 | 41.026 | 117 | 65 | 2 | 4 | 120 | 2 | 114 | 2.23e-23 | 92.0 |
MS.gene82214.t1 | AT5G59320 | 50.526 | 95 | 42 | 2 | 149 | 243 | 23 | 112 | 3.63e-23 | 91.7 |
MS.gene82214.t1 | AT5G59310 | 48.113 | 106 | 43 | 4 | 137 | 242 | 15 | 108 | 7.44e-23 | 90.9 |
MS.gene82214.t1 | AT5G59310 | 39.316 | 117 | 64 | 3 | 4 | 120 | 2 | 111 | 4.76e-22 | 88.6 |
MS.gene82214.t1 | AT2G38530 | 41.739 | 115 | 63 | 2 | 130 | 244 | 6 | 116 | 3.38e-21 | 86.7 |
MS.gene82214.t1 | AT2G38530 | 40.517 | 116 | 65 | 4 | 7 | 120 | 4 | 117 | 6.28e-19 | 80.5 |
MS.gene82214.t1 | AT3G51600 | 41.739 | 115 | 63 | 2 | 130 | 244 | 6 | 116 | 2.76e-20 | 84.3 |
MS.gene82214.t1 | AT3G51600 | 36.522 | 115 | 71 | 2 | 7 | 120 | 4 | 117 | 1.98e-16 | 73.9 |
MS.gene82214.t1 | AT3G51590 | 39.130 | 115 | 64 | 3 | 130 | 244 | 6 | 114 | 6.75e-20 | 83.2 |
MS.gene82214.t1 | AT3G51590 | 37.838 | 111 | 66 | 3 | 10 | 120 | 8 | 115 | 1.61e-18 | 79.3 |
MS.gene82214.t1 | AT2G18370 | 35.345 | 116 | 68 | 2 | 131 | 244 | 4 | 114 | 2.26e-18 | 79.0 |
MS.gene82214.t1 | AT2G18370 | 32.407 | 108 | 70 | 3 | 12 | 117 | 6 | 112 | 3.04e-13 | 65.1 |
MS.gene82214.t1 | AT4G33355 | 32.407 | 108 | 72 | 1 | 13 | 120 | 12 | 118 | 2.64e-15 | 70.9 |
MS.gene82214.t1 | AT4G33355 | 36.667 | 120 | 69 | 3 | 125 | 244 | 5 | 117 | 6.13e-15 | 70.1 |
MS.gene82214.t1 | AT4G33355 | 33.333 | 105 | 69 | 1 | 13 | 117 | 12 | 115 | 5.32e-15 | 70.1 |
MS.gene82214.t1 | AT4G33355 | 36.134 | 119 | 69 | 3 | 125 | 243 | 5 | 116 | 2.04e-14 | 68.6 |
Find 76 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCGATCCATGGACTGAATA+TGG | 0.258365 | 4.2:+75569739 | MS.gene82214:CDS |
CTTGACAATGATGATGTTCA+TGG | 0.274437 | 4.2:+75569517 | MS.gene82214:CDS |
TGGTTTGAGCCATAGTATTA+AGG | 0.282339 | 4.2:-75572419 | None:intergenic |
ATTGTGTTTCTTGTAACTTT+TGG | 0.294759 | 4.2:+75572273 | MS.gene82214:CDS |
GGCAACTAGGCTTGTTTGTT+TGG | 0.295657 | 4.2:+75572248 | MS.gene82214:CDS |
GTTAACTTGCCTTATACTCT+TGG | 0.355324 | 4.2:+75569794 | MS.gene82214:CDS |
TCTTCAAGTAGAAACAAAAT+TGG | 0.372504 | 4.2:+75569577 | MS.gene82214:CDS |
CATCATAGGTTACTCAACTA+TGG | 0.372696 | 4.2:+75572227 | MS.gene82214:CDS |
GCCCTAATACCGACTGTAAC+AGG | 0.378156 | 4.2:+75572577 | MS.gene82214:CDS |
GTGGAGGGACCAAGAGTATA+AGG | 0.378943 | 4.2:-75569803 | None:intergenic |
TACCTGTTACAGTCGGTATT+AGG | 0.379758 | 4.2:-75572579 | None:intergenic |
GAAGACCAGCAGCAAGGTTA+AGG | 0.386841 | 4.2:-75572518 | None:intergenic |
ACCTGTTACAGTCGGTATTA+GGG | 0.395247 | 4.2:-75572578 | None:intergenic |
GGCGTCCTGACGATCAGATT+TGG | 0.403991 | 4.2:-75569690 | None:intergenic |
GTAACAGCTGCTTCAGCCTT+AGG | 0.410392 | 4.2:-75572297 | None:intergenic |
AGTAAGGAACCTTAATACTA+TGG | 0.425103 | 4.2:+75572410 | MS.gene82214:CDS |
AACAGCTCTACGATCATTTG+TGG | 0.431202 | 4.2:-75572439 | None:intergenic |
AATGAGTTGGGCCAATCTGC+AGG | 0.439780 | 4.2:-75572718 | None:intergenic |
GTATCATGTATGATTGAGAT+TGG | 0.440193 | 4.2:+75572748 | MS.gene82214:CDS |
GCTAACATCCCTGGCAGATG+TGG | 0.442530 | 4.2:+75569770 | MS.gene82214:CDS |
AGTCGGTATTAGGGCTGATC+TGG | 0.443403 | 4.2:-75572569 | None:intergenic |
TATGTCTAGCTCAATGGTAT+TGG | 0.446087 | 4.2:+75569481 | None:intergenic |
TGTGTTTCTTACATTATGAC+TGG | 0.454062 | 4.2:+75572354 | MS.gene82214:CDS |
TACTACATTAGCCTCATCAT+AGG | 0.456032 | 4.2:+75572213 | MS.gene82214:intron |
GGTCACGGCTTGGTTGTGTA+TGG | 0.459941 | 4.2:-75569669 | None:intergenic |
CACAGTGTTGTAATGGAGTA+AGG | 0.461553 | 4.2:+75572394 | MS.gene82214:CDS |
CGTGACCAAATCTGATCGTC+AGG | 0.473248 | 4.2:+75569685 | MS.gene82214:CDS |
AAGTTAACCCCACATCTGCC+AGG | 0.482251 | 4.2:-75569779 | None:intergenic |
GTCCCTCAAGCGTGCTGCGA+TGG | 0.482531 | 4.2:+75569638 | MS.gene82214:CDS |
CTGAGAGCATCAAGAGTTTG+TGG | 0.484983 | 4.2:-75569551 | None:intergenic |
CTAACATCCCTGGCAGATGT+GGG | 0.490574 | 4.2:+75569771 | MS.gene82214:CDS |
GTTAACAGCATTCTTAATGC+AGG | 0.496302 | 4.2:-75572466 | None:intergenic |
GATACGATCGAGAATGAGTT+GGG | 0.498736 | 4.2:-75572730 | None:intergenic |
AGCGTGCTGCGATGGTGTTA+AGG | 0.499638 | 4.2:+75569646 | MS.gene82214:CDS |
AAGAATGCTGTTAACCAAAG+TGG | 0.504107 | 4.2:+75572474 | MS.gene82214:CDS |
ACTGCTGCTTCCGCGATCCA+TGG | 0.508810 | 4.2:+75569728 | MS.gene82214:CDS |
ATAAACCTTAACCTTGCTGC+TGG | 0.510476 | 4.2:+75572513 | MS.gene82214:CDS |
TATCATGTATGATTGAGATT+GGG | 0.511174 | 4.2:+75572749 | MS.gene82214:CDS |
CAAAATTGGTACCATGCGTC+GGG | 0.511654 | 4.2:+75569591 | MS.gene82214:CDS |
ATTCAATATGTCTAGCTCAA+TGG | 0.512107 | 4.2:+75569475 | None:intergenic |
CACCATCGCAGCACGCTTGA+GGG | 0.512663 | 4.2:-75569640 | None:intergenic |
GATCAGATTTGGTCACGGCT+TGG | 0.512942 | 4.2:-75569679 | None:intergenic |
CCATGCGTCGGGTATGTGAC+AGG | 0.516553 | 4.2:+75569602 | MS.gene82214:CDS |
ATGTTAACACCACATTTCCT+TGG | 0.522311 | 4.2:-75572540 | None:intergenic |
GTCGGGTATGTGACAGGAAA+TGG | 0.525843 | 4.2:+75569608 | MS.gene82214:CDS |
GTATTAGGGCTGATCTGGTA+AGG | 0.526182 | 4.2:-75572564 | None:intergenic |
ACACCATCGCAGCACGCTTG+AGG | 0.527998 | 4.2:-75569641 | None:intergenic |
GAGTGTCCATATTCAGTCCA+TGG | 0.541841 | 4.2:-75569745 | None:intergenic |
TCATATGTAGCCCTGCAGAT+TGG | 0.543843 | 4.2:+75572707 | MS.gene82214:intron |
GTTCCTGCACAGTGTTGTAA+TGG | 0.544737 | 4.2:+75572387 | MS.gene82214:CDS |
GACACTCTTGCTAACATCCC+TGG | 0.549472 | 4.2:+75569761 | MS.gene82214:CDS |
ACCTTGCTGCTGGTCTTCCA+AGG | 0.551966 | 4.2:+75572523 | MS.gene82214:CDS |
GTTACTCAACTATGGCAACT+AGG | 0.553884 | 4.2:+75572235 | MS.gene82214:CDS |
ACAAAATTGGTACCATGCGT+CGG | 0.556839 | 4.2:+75569590 | MS.gene82214:CDS |
TAGTGTAACTGAAACCACTT+TGG | 0.556891 | 4.2:-75572488 | None:intergenic |
AGCAGTCTTGATACACCTAC+AGG | 0.560408 | 4.2:-75569711 | None:intergenic |
TGATACGATCGAGAATGAGT+TGG | 0.568077 | 4.2:-75572731 | None:intergenic |
TAGCTCAATGGTATTGGTGA+AGG | 0.575180 | 4.2:+75569487 | MS.gene82214:CDS |
GTTTCTTACATTATGACTGG+TGG | 0.579604 | 4.2:+75572357 | MS.gene82214:CDS |
GCTGGTCTTCCAAGGAAATG+TGG | 0.584199 | 4.2:+75572531 | MS.gene82214:CDS |
CTGATCGTCAGGACGCCTGT+AGG | 0.587938 | 4.2:+75569696 | MS.gene82214:CDS |
ACTCCATTACAACACTGTGC+AGG | 0.590449 | 4.2:-75572390 | None:intergenic |
GCTTGTCACAACTTGACCAC+AGG | 0.613475 | 4.2:-75572322 | None:intergenic |
CCTGTCACATACCCGACGCA+TGG | 0.617611 | 4.2:-75569602 | None:intergenic |
TCCTTGGAAGACCAGCAGCA+AGG | 0.622205 | 4.2:-75572524 | None:intergenic |
GAAGCAGCTGTTACATCCTG+TGG | 0.634952 | 4.2:+75572306 | MS.gene82214:CDS |
ATGAGTTGGGCCAATCTGCA+GGG | 0.638852 | 4.2:-75572717 | None:intergenic |
AGTTAACCCCACATCTGCCA+GGG | 0.643808 | 4.2:-75569778 | None:intergenic |
CATATTCAGTCCATGGATCG+CGG | 0.645471 | 4.2:-75569738 | None:intergenic |
CTGACGATCAGATTTGGTCA+CGG | 0.647791 | 4.2:-75569684 | None:intergenic |
TAGTTGAGTAACCTATGATG+AGG | 0.651517 | 4.2:-75572224 | None:intergenic |
GTCATAATGTAAGAAACACA+AGG | 0.653065 | 4.2:-75572351 | None:intergenic |
TAACATCCCTGGCAGATGTG+GGG | 0.672927 | 4.2:+75569772 | MS.gene82214:CDS |
TAAGTGGTACCTGTTACAGT+CGG | 0.691959 | 4.2:-75572586 | None:intergenic |
TCATAATGTAAGAAACACAA+GGG | 0.708823 | 4.2:-75572350 | None:intergenic |
GGGTATGTGACAGGAAATGG+TGG | 0.729469 | 4.2:+75569611 | MS.gene82214:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATACATATATATACTAA+AGG | - | chr4.2:75572637-75572656 | None:intergenic | 10.0% |
!! | AAATAACAAAATATTTATGT+TGG | - | chr4.2:75572192-75572211 | None:intergenic | 10.0% |
!! | AAATACATATATATACTAAA+GGG | - | chr4.2:75572636-75572655 | None:intergenic | 10.0% |
!!! | AATTTTGATATATTTTTCTT+TGG | - | chr4.2:75571663-75571682 | None:intergenic | 10.0% |
!!! | ATTTTGATATATTTTTCTTT+GGG | - | chr4.2:75571662-75571681 | None:intergenic | 10.0% |
!!! | TATAATGCTTTAAATTTTTT+AGG | + | chr4.2:75572042-75572061 | MS.gene82214:intron | 10.0% |
!! | ATAACTTTATCATAATCAAT+GGG | - | chr4.2:75569855-75569874 | None:intergenic | 15.0% |
!! | CAATAAAAGTTAACTTAATA+AGG | - | chr4.2:75570342-75570361 | None:intergenic | 15.0% |
!! | CTATTGATATATTTCTTTAA+GGG | - | chr4.2:75570733-75570752 | None:intergenic | 15.0% |
!! | TAATACATAAGATATTGTTA+TGG | - | chr4.2:75570548-75570567 | None:intergenic | 15.0% |
!! | TAATTAGATATGATTACAAT+CGG | - | chr4.2:75570487-75570506 | None:intergenic | 15.0% |
!! | TATAACTTTATCATAATCAA+TGG | - | chr4.2:75569856-75569875 | None:intergenic | 15.0% |
!! | TCTATTGATATATTTCTTTA+AGG | - | chr4.2:75570734-75570753 | None:intergenic | 15.0% |
!! | TGAAATGTGTTAAATTTATT+AGG | + | chr4.2:75571741-75571760 | MS.gene82214:intron | 15.0% |
!! | TTGTAGAGTTTATATATATA+GGG | - | chr4.2:75572127-75572146 | None:intergenic | 15.0% |
!!! | ATCATATGATTCATATTTTA+AGG | - | chr4.2:75571688-75571707 | None:intergenic | 15.0% |
!!! | GAAAACTACTTTTTTTTTTT+TGG | - | chr4.2:75571604-75571623 | None:intergenic | 15.0% |
!!! | TAATTTGATTTTAGTTTTGT+GGG | - | chr4.2:75572161-75572180 | None:intergenic | 15.0% |
!!! | TTAATTTGATTTTAGTTTTG+TGG | - | chr4.2:75572162-75572181 | None:intergenic | 15.0% |
!!! | TTATATAACCTTTGATTTAA+TGG | - | chr4.2:75570919-75570938 | None:intergenic | 15.0% |
!! | AAAAATATGTTCAACATGTA+AGG | + | chr4.2:75571822-75571841 | MS.gene82214:intron | 20.0% |
!! | AAAATATGTTCAACATGTAA+GGG | + | chr4.2:75571823-75571842 | MS.gene82214:intron | 20.0% |
!! | AATTAGATATGATTACAATC+GGG | - | chr4.2:75570486-75570505 | None:intergenic | 20.0% |
!! | ACATATGTGAATATTATAAG+TGG | - | chr4.2:75572605-75572624 | None:intergenic | 20.0% |
!! | GTTGTAGAGTTTATATATAT+AGG | - | chr4.2:75572128-75572147 | None:intergenic | 20.0% |
!! | TAACTTTATCATAATCAATG+GGG | - | chr4.2:75569854-75569873 | None:intergenic | 20.0% |
!! | TATACTATTAATACTATCTG+AGG | - | chr4.2:75571245-75571264 | None:intergenic | 20.0% |
!! | TGTAGAGTTTATATATATAG+GGG | - | chr4.2:75572126-75572145 | None:intergenic | 20.0% |
!! | TTTATATATATAGGGGAAAA+GGG | - | chr4.2:75572119-75572138 | None:intergenic | 20.0% |
!!! | AACATTTATTTTTTCTGCAA+TGG | - | chr4.2:75571156-75571175 | None:intergenic | 20.0% |
!!! | AATACCAAACTTTTTTTTGA+AGG | - | chr4.2:75571465-75571484 | None:intergenic | 20.0% |
!!! | GATCTATCTTTAAAAATCAT+AGG | + | chr4.2:75571195-75571214 | MS.gene82214:intron | 20.0% |
!!! | TTTTCCTTCAAAAAAAAGTT+TGG | + | chr4.2:75571458-75571477 | MS.gene82214:intron | 20.0% |
! | AAAAAATTGAAATGCGTTGA+TGG | + | chr4.2:75569971-75569990 | MS.gene82214:intron | 25.0% |
! | AAAATATTTATGTTGGCAAG+TGG | - | chr4.2:75572185-75572204 | None:intergenic | 25.0% |
! | AAAGAAATGCTAACATGTAA+GGG | + | chr4.2:75571500-75571519 | MS.gene82214:intron | 25.0% |
! | AAGTATCACCATTAAATCAA+AGG | + | chr4.2:75570908-75570927 | MS.gene82214:intron | 25.0% |
! | ACACACAAATGAAATGTTTA+TGG | + | chr4.2:75570793-75570812 | MS.gene82214:intron | 25.0% |
! | ATCTTATATGTGATTTGAGT+TGG | - | chr4.2:75570235-75570254 | None:intergenic | 25.0% |
! | ATTAGATATGATTACAATCG+GGG | - | chr4.2:75570485-75570504 | None:intergenic | 25.0% |
! | ATTTGACACATTCTCATAAT+TGG | + | chr4.2:75571380-75571399 | MS.gene82214:intron | 25.0% |
! | CACACAAATGAAATGTTTAT+GGG | + | chr4.2:75570794-75570813 | MS.gene82214:intron | 25.0% |
! | CACGAAAGAAAAGAAAATTA+AGG | + | chr4.2:75570680-75570699 | MS.gene82214:intron | 25.0% |
! | CCAATAGTAAAAAACAAACT+TGG | + | chr4.2:75570953-75570972 | MS.gene82214:intron | 25.0% |
! | GAATGGTTGTTCATAAATTA+AGG | + | chr4.2:75570647-75570666 | MS.gene82214:intron | 25.0% |
! | GTGATACTTATTTGATCAAA+CGG | - | chr4.2:75570897-75570916 | None:intergenic | 25.0% |
! | GTTTATATATATAGGGGAAA+AGG | - | chr4.2:75572120-75572139 | None:intergenic | 25.0% |
! | GTTTCTCTATTAGAAAAGAA+TGG | + | chr4.2:75570630-75570649 | MS.gene82214:intron | 25.0% |
! | TAAAGAAATGCTAACATGTA+AGG | + | chr4.2:75571499-75571518 | MS.gene82214:intron | 25.0% |
! | TATCATGTATGATTGAGATT+GGG | + | chr4.2:75572749-75572768 | MS.gene82214:CDS | 25.0% |
! | TCATAATGTAAGAAACACAA+GGG | - | chr4.2:75572353-75572372 | None:intergenic | 25.0% |
! | TCTTCAAGTAGAAACAAAAT+TGG | + | chr4.2:75569577-75569596 | MS.gene82214:CDS | 25.0% |
! | TTCTAATAGAGAAACATAGA+TGG | - | chr4.2:75570625-75570644 | None:intergenic | 25.0% |
! | TTTGTCTGATCTTAATCTAA+CGG | - | chr4.2:75571417-75571436 | None:intergenic | 25.0% |
!! | ATTGTGTTTCTTGTAACTTT+TGG | + | chr4.2:75572273-75572292 | MS.gene82214:CDS | 25.0% |
!! | TAACTTTTATTGTCAAATGC+AGG | + | chr4.2:75570350-75570369 | MS.gene82214:intron | 25.0% |
!!! | CCAAGTTTGTTTTTTACTAT+TGG | - | chr4.2:75570956-75570975 | None:intergenic | 25.0% |
!!! | GACAAACTAGATTTTAAGTT+TGG | + | chr4.2:75571431-75571450 | MS.gene82214:intron | 25.0% |
AAAAATCATAGGCATACGTT+TGG | + | chr4.2:75571206-75571225 | MS.gene82214:intron | 30.0% | |
AAGTTATGCTAACGTGTTTA+AGG | - | chr4.2:75571945-75571964 | None:intergenic | 30.0% | |
ACATCAGAGAATAAAGAAGT+TGG | + | chr4.2:75570435-75570454 | MS.gene82214:intron | 30.0% | |
AGGTGAATTGAGTATCATTA+TGG | - | chr4.2:75571295-75571314 | None:intergenic | 30.0% | |
AGTAAGGAACCTTAATACTA+TGG | + | chr4.2:75572410-75572429 | MS.gene82214:CDS | 30.0% | |
ATCATATGATCGCAATCTAA+TGG | + | chr4.2:75571698-75571717 | MS.gene82214:intron | 30.0% | |
ATGAAATGTTTATGGGTCAA+AGG | + | chr4.2:75570801-75570820 | MS.gene82214:intron | 30.0% | |
GGTGAATTGAGTATCATTAT+GGG | - | chr4.2:75571294-75571313 | None:intergenic | 30.0% | |
GTATCATGTATGATTGAGAT+TGG | + | chr4.2:75572748-75572767 | MS.gene82214:CDS | 30.0% | |
GTCATAATGTAAGAAACACA+AGG | - | chr4.2:75572354-75572373 | None:intergenic | 30.0% | |
TGTGTTTCTTACATTATGAC+TGG | + | chr4.2:75572354-75572373 | MS.gene82214:CDS | 30.0% | |
TTAGATATGATTACAATCGG+GGG | - | chr4.2:75570484-75570503 | None:intergenic | 30.0% | |
TTTAGATCAGTACAAAAGTG+AGG | + | chr4.2:75570839-75570858 | MS.gene82214:intron | 30.0% | |
! | AAAGATTTTGTTGAGACTTG+AGG | + | chr4.2:75571063-75571082 | MS.gene82214:intron | 30.0% |
! | AAGATTTTGTTGAGACTTGA+GGG | + | chr4.2:75571064-75571083 | MS.gene82214:intron | 30.0% |
! | GATGTTGTTTATCAAGTTTG+AGG | + | chr4.2:75570410-75570429 | MS.gene82214:intron | 30.0% |
! | GTCTCAACAAAATCTTTTGT+CGG | - | chr4.2:75571060-75571079 | None:intergenic | 30.0% |
! | TGGTTATAGTTTGTAGCATA+TGG | - | chr4.2:75570528-75570547 | None:intergenic | 30.0% |
!! | ATGATGATGTTCATGGTTTT+AGG | + | chr4.2:75569524-75569543 | MS.gene82214:CDS | 30.0% |
AAGAATGCTGTTAACCAAAG+TGG | + | chr4.2:75572474-75572493 | MS.gene82214:CDS | 35.0% | |
ATAGATCGTTGACAATGCAT+TGG | - | chr4.2:75571182-75571201 | None:intergenic | 35.0% | |
ATATATAGGGGAAAAGGGTA+TGG | - | chr4.2:75572114-75572133 | None:intergenic | 35.0% | |
ATGTTAACACCACATTTCCT+TGG | - | chr4.2:75572543-75572562 | None:intergenic | 35.0% | |
CATCATAGGTTACTCAACTA+TGG | + | chr4.2:75572227-75572246 | MS.gene82214:CDS | 35.0% | |
GTATCATTATGGGTGATAGT+TGG | - | chr4.2:75571284-75571303 | None:intergenic | 35.0% | |
GTGAACACATTTATGTTCGT+TGG | - | chr4.2:75572018-75572037 | None:intergenic | 35.0% | |
GTTAACAGCATTCTTAATGC+AGG | - | chr4.2:75572469-75572488 | None:intergenic | 35.0% | |
GTTTCTTACATTATGACTGG+TGG | + | chr4.2:75572357-75572376 | MS.gene82214:CDS | 35.0% | |
TAGTGTAACTGAAACCACTT+TGG | - | chr4.2:75572491-75572510 | None:intergenic | 35.0% | |
TAGTTGAGTAACCTATGATG+AGG | - | chr4.2:75572227-75572246 | None:intergenic | 35.0% | |
TATGTTCGTTGGATCAAGAT+CGG | - | chr4.2:75572007-75572026 | None:intergenic | 35.0% | |
TCATGTAGTTAGCACATCTA+TGG | - | chr4.2:75571724-75571743 | None:intergenic | 35.0% | |
TGATCTTAATCTAACGGTCA+TGG | - | chr4.2:75571411-75571430 | None:intergenic | 35.0% | |
TGGTTTGAGCCATAGTATTA+AGG | - | chr4.2:75572422-75572441 | None:intergenic | 35.0% | |
TTGTAGTTATGTGGTAGTTG+AGG | - | chr4.2:75571315-75571334 | None:intergenic | 35.0% | |
TTTGTCTGATCTCAATCTGT+CGG | - | chr4.2:75571770-75571789 | None:intergenic | 35.0% | |
! | AAATCTTTTGTCGGTGTACT+AGG | - | chr4.2:75571051-75571070 | None:intergenic | 35.0% |
! | CTTGACAATGATGATGTTCA+TGG | + | chr4.2:75569517-75569536 | MS.gene82214:CDS | 35.0% |
! | TACTACATTAGCCTCATCAT+AGG | + | chr4.2:75572213-75572232 | MS.gene82214:intron | 35.0% |
! | TATATAGGGGAAAAGGGTAT+GGG | - | chr4.2:75572113-75572132 | None:intergenic | 35.0% |
! | TCTTGTAACTTTTGGTCCTA+AGG | + | chr4.2:75572281-75572300 | MS.gene82214:CDS | 35.0% |
!! | GTTAACTTGCCTTATACTCT+TGG | + | chr4.2:75569794-75569813 | MS.gene82214:CDS | 35.0% |
AACAGCTCTACGATCATTTG+TGG | - | chr4.2:75572442-75572461 | None:intergenic | 40.0% | |
ACAAAATTGGTACCATGCGT+CGG | + | chr4.2:75569590-75569609 | MS.gene82214:CDS | 40.0% | |
ACCTGTTACAGTCGGTATTA+GGG | - | chr4.2:75572581-75572600 | None:intergenic | 40.0% | |
ATAAACCTTAACCTTGCTGC+TGG | + | chr4.2:75572513-75572532 | MS.gene82214:CDS | 40.0% | |
CTTAATCTAACGGTCATGGA+TGG | - | chr4.2:75571407-75571426 | None:intergenic | 40.0% | |
GATACGATCGAGAATGAGTT+GGG | - | chr4.2:75572733-75572752 | None:intergenic | 40.0% | |
GGCTACACATGATTAATGTG+TGG | + | chr4.2:75570456-75570475 | MS.gene82214:intron | 40.0% | |
GTTACTCAACTATGGCAACT+AGG | + | chr4.2:75572235-75572254 | MS.gene82214:CDS | 40.0% | |
TAAGTGGTACCTGTTACAGT+CGG | - | chr4.2:75572589-75572608 | None:intergenic | 40.0% | |
TACCTGTTACAGTCGGTATT+AGG | - | chr4.2:75572582-75572601 | None:intergenic | 40.0% | |
TGATACGATCGAGAATGAGT+TGG | - | chr4.2:75572734-75572753 | None:intergenic | 40.0% | |
TGCAATCATCTTAGAACGTG+TGG | - | chr4.2:75571350-75571369 | None:intergenic | 40.0% | |
TTTATGGGGTGCATGCAAAA+GGG | - | chr4.2:75572086-75572105 | None:intergenic | 40.0% | |
! | AAAGGGTATGGGTGTGTTTA+TGG | - | chr4.2:75572102-75572121 | None:intergenic | 40.0% |
! | AAGGGTATGGGTGTGTTTAT+GGG | - | chr4.2:75572101-75572120 | None:intergenic | 40.0% |
! | CAAAAGGGCATGTAGGAAAT+CGG | - | chr4.2:75572071-75572090 | None:intergenic | 40.0% |
! | CACAGTGTTGTAATGGAGTA+AGG | + | chr4.2:75572394-75572413 | MS.gene82214:CDS | 40.0% |
!! | TAGCTCAATGGTATTGGTGA+AGG | + | chr4.2:75569487-75569506 | MS.gene82214:CDS | 40.0% |
ACCACATAACTACAAGCACG+TGG | + | chr4.2:75571320-75571339 | MS.gene82214:intron | 45.0% | |
ACTCCATTACAACACTGTGC+AGG | - | chr4.2:75572393-75572412 | None:intergenic | 45.0% | |
AGCAGTCTTGATACACCTAC+AGG | - | chr4.2:75569714-75569733 | None:intergenic | 45.0% | |
AGGGTATGGGTGTGTTTATG+GGG | - | chr4.2:75572100-75572119 | None:intergenic | 45.0% | |
CAAAATTGGTACCATGCGTC+GGG | + | chr4.2:75569591-75569610 | MS.gene82214:CDS | 45.0% | |
CATATTCAGTCCATGGATCG+CGG | - | chr4.2:75569741-75569760 | None:intergenic | 45.0% | |
GAGTGTCCATATTCAGTCCA+TGG | - | chr4.2:75569748-75569767 | None:intergenic | 45.0% | |
GTATTAGGGCTGATCTGGTA+AGG | - | chr4.2:75572567-75572586 | None:intergenic | 45.0% | |
GTTCCTGCACAGTGTTGTAA+TGG | + | chr4.2:75572387-75572406 | MS.gene82214:CDS | 45.0% | |
GTTTATGGGGTGCATGCAAA+AGG | - | chr4.2:75572087-75572106 | None:intergenic | 45.0% | |
TCATATGTAGCCCTGCAGAT+TGG | + | chr4.2:75572707-75572726 | MS.gene82214:intron | 45.0% | |
! | ATACTTTTCGCAGCTTGTGG+AGG | - | chr4.2:75569822-75569841 | None:intergenic | 45.0% |
! | CTGACGATCAGATTTGGTCA+CGG | - | chr4.2:75569687-75569706 | None:intergenic | 45.0% |
! | GACATACTTTTCGCAGCTTG+TGG | - | chr4.2:75569825-75569844 | None:intergenic | 45.0% |
! | GGCAACTAGGCTTGTTTGTT+TGG | + | chr4.2:75572248-75572267 | MS.gene82214:CDS | 45.0% |
! | GGTGTACTAGGTTTTCTGGA+AGG | - | chr4.2:75571039-75571058 | None:intergenic | 45.0% |
! | TACTTTTCGCAGCTTGTGGA+GGG | - | chr4.2:75569821-75569840 | None:intergenic | 45.0% |
! | TGTCGGTGTACTAGGTTTTC+TGG | - | chr4.2:75571043-75571062 | None:intergenic | 45.0% |
!! | CTGAGAGCATCAAGAGTTTG+TGG | - | chr4.2:75569554-75569573 | None:intergenic | 45.0% |
!! | AAAAAAAAAAAAAAAAAAAG+AGG | + | chr4.2:75570187-75570206 | MS.gene82214:intron | 5.0% |
!! | GTTAAAATTAATAAATAATA+TGG | + | chr4.2:75570569-75570588 | MS.gene82214:intron | 5.0% |
AAGTTAACCCCACATCTGCC+AGG | - | chr4.2:75569782-75569801 | None:intergenic | 50.0% | |
AGCAGCAGCTACAGCTTAGA+GGG | + | chr4.2:75570381-75570400 | MS.gene82214:intron | 50.0% | |
AGTCGGTATTAGGGCTGATC+TGG | - | chr4.2:75572572-75572591 | None:intergenic | 50.0% | |
AGTTAACCCCACATCTGCCA+GGG | - | chr4.2:75569781-75569800 | None:intergenic | 50.0% | |
CGTGACCAAATCTGATCGTC+AGG | + | chr4.2:75569685-75569704 | MS.gene82214:CDS | 50.0% | |
CTAACATCCCTGGCAGATGT+GGG | + | chr4.2:75569771-75569790 | MS.gene82214:CDS | 50.0% | |
GAAGACCAGCAGCAAGGTTA+AGG | - | chr4.2:75572521-75572540 | None:intergenic | 50.0% | |
GAAGCAGCTGTTACATCCTG+TGG | + | chr4.2:75572306-75572325 | MS.gene82214:CDS | 50.0% | |
GACACTCTTGCTAACATCCC+TGG | + | chr4.2:75569761-75569780 | MS.gene82214:CDS | 50.0% | |
GCCACGTGCTTGTAGTTATG+TGG | - | chr4.2:75571324-75571343 | None:intergenic | 50.0% | |
GCTTGTCACAACTTGACCAC+AGG | - | chr4.2:75572325-75572344 | None:intergenic | 50.0% | |
GGGTATGTGACAGGAAATGG+TGG | + | chr4.2:75569611-75569630 | MS.gene82214:CDS | 50.0% | |
GTAACAGCTGCTTCAGCCTT+AGG | - | chr4.2:75572300-75572319 | None:intergenic | 50.0% | |
GTCGGGTATGTGACAGGAAA+TGG | + | chr4.2:75569608-75569627 | MS.gene82214:CDS | 50.0% | |
TAACATCCCTGGCAGATGTG+GGG | + | chr4.2:75569772-75569791 | MS.gene82214:CDS | 50.0% | |
! | AATGAGTTGGGCCAATCTGC+AGG | - | chr4.2:75572721-75572740 | None:intergenic | 50.0% |
! | ATGAGTTGGGCCAATCTGCA+GGG | - | chr4.2:75572720-75572739 | None:intergenic | 50.0% |
! | CGCGATCCATGGACTGAATA+TGG | + | chr4.2:75569739-75569758 | MS.gene82214:CDS | 50.0% |
! | GATCAGATTTGGTCACGGCT+TGG | - | chr4.2:75569682-75569701 | None:intergenic | 50.0% |
! | GCCCTAATACCGACTGTAAC+AGG | + | chr4.2:75572577-75572596 | MS.gene82214:CDS | 50.0% |
! | GTGCATGCAAAAGGGCATGT+AGG | - | chr4.2:75572078-75572097 | None:intergenic | 50.0% |
! | GTGGAGGGACCAAGAGTATA+AGG | - | chr4.2:75569806-75569825 | None:intergenic | 50.0% |
!! | GCTGGTCTTCCAAGGAAATG+TGG | + | chr4.2:75572531-75572550 | MS.gene82214:CDS | 50.0% |
CAGCAGCTACAGCTTAGAGG+GGG | + | chr4.2:75570383-75570402 | MS.gene82214:intron | 55.0% | |
GAGCAGCAGCTACAGCTTAG+AGG | + | chr4.2:75570380-75570399 | MS.gene82214:intron | 55.0% | |
GCAGCAGCTACAGCTTAGAG+GGG | + | chr4.2:75570382-75570401 | MS.gene82214:intron | 55.0% | |
GCTAACATCCCTGGCAGATG+TGG | + | chr4.2:75569770-75569789 | MS.gene82214:CDS | 55.0% | |
GGCGTCCTGACGATCAGATT+TGG | - | chr4.2:75569693-75569712 | None:intergenic | 55.0% | |
TCCTTGGAAGACCAGCAGCA+AGG | - | chr4.2:75572527-75572546 | None:intergenic | 55.0% | |
! | AGCGTGCTGCGATGGTGTTA+AGG | + | chr4.2:75569646-75569665 | MS.gene82214:CDS | 55.0% |
!! | ACCTTGCTGCTGGTCTTCCA+AGG | + | chr4.2:75572523-75572542 | MS.gene82214:CDS | 55.0% |
!! | GGTCACGGCTTGGTTGTGTA+TGG | - | chr4.2:75569672-75569691 | None:intergenic | 55.0% |
ACACCATCGCAGCACGCTTG+AGG | - | chr4.2:75569644-75569663 | None:intergenic | 60.0% | |
CACCATCGCAGCACGCTTGA+GGG | - | chr4.2:75569643-75569662 | None:intergenic | 60.0% | |
CCATGCGTCGGGTATGTGAC+AGG | + | chr4.2:75569602-75569621 | MS.gene82214:CDS | 60.0% | |
CCTGTCACATACCCGACGCA+TGG | - | chr4.2:75569605-75569624 | None:intergenic | 60.0% | |
CTGATCGTCAGGACGCCTGT+AGG | + | chr4.2:75569696-75569715 | MS.gene82214:CDS | 60.0% | |
! | ACTGCTGCTTCCGCGATCCA+TGG | + | chr4.2:75569728-75569747 | MS.gene82214:CDS | 60.0% |
GTCCCTCAAGCGTGCTGCGA+TGG | + | chr4.2:75569638-75569657 | MS.gene82214:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 75569482 | 75572795 | 75569482 | ID=MS.gene82214 |
chr4.2 | mRNA | 75569482 | 75572795 | 75569482 | ID=MS.gene82214.t1;Parent=MS.gene82214 |
chr4.2 | exon | 75569482 | 75569837 | 75569482 | ID=MS.gene82214.t1.exon1;Parent=MS.gene82214.t1 |
chr4.2 | CDS | 75569482 | 75569837 | 75569482 | ID=cds.MS.gene82214.t1;Parent=MS.gene82214.t1 |
chr4.2 | exon | 75572224 | 75572598 | 75572224 | ID=MS.gene82214.t1.exon2;Parent=MS.gene82214.t1 |
chr4.2 | CDS | 75572224 | 75572598 | 75572224 | ID=cds.MS.gene82214.t1;Parent=MS.gene82214.t1 |
chr4.2 | exon | 75572717 | 75572795 | 75572717 | ID=MS.gene82214.t1.exon3;Parent=MS.gene82214.t1 |
chr4.2 | CDS | 75572717 | 75572795 | 75572717 | ID=cds.MS.gene82214.t1;Parent=MS.gene82214.t1 |
Gene Sequence |
Protein sequence |