Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82571.t1 | XP_003620479.2 | 97.1 | 349 | 10 | 0 | 1 | 349 | 1 | 349 | 5.20E-194 | 686.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82571.t1 | Q9C942 | 35.0 | 297 | 178 | 5 | 52 | 341 | 34 | 322 | 1.0e-44 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82571.t1 | G7KN38 | 97.1 | 345 | 10 | 0 | 5 | 349 | 1 | 345 | 3.5e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene82571 | 0.856367 | 3.38E-62 | -1.69E-46 |
| MS.gene050206 | MS.gene82571 | 0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene050298 | MS.gene82571 | 0.811798 | 5.85E-51 | -1.69E-46 |
| MS.gene050563 | MS.gene82571 | 0.855175 | 7.52E-62 | -1.69E-46 |
| MS.gene050584 | MS.gene82571 | 0.880405 | 5.64E-70 | -1.69E-46 |
| MS.gene050585 | MS.gene82571 | 0.862613 | 4.48E-64 | -1.69E-46 |
| MS.gene050587 | MS.gene82571 | 0.925827 | 1.08E-90 | -1.69E-46 |
| MS.gene050807 | MS.gene82571 | 0.811685 | 6.19E-51 | -1.69E-46 |
| MS.gene05143 | MS.gene82571 | 0.84591 | 3.02E-59 | -1.69E-46 |
| MS.gene051626 | MS.gene82571 | 0.8105 | 1.12E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene82571 | 0.881265 | 2.77E-70 | -1.69E-46 |
| MS.gene052142 | MS.gene82571 | 0.868855 | 4.79E-66 | -1.69E-46 |
| MS.gene052698 | MS.gene82571 | 0.835273 | 1.85E-56 | -1.69E-46 |
| MS.gene053074 | MS.gene82571 | 0.847841 | 8.96E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene82571 | 0.870362 | 1.55E-66 | -1.69E-46 |
| MS.gene053563 | MS.gene82571 | 0.820116 | 8.13E-53 | -1.69E-46 |
| MS.gene05456 | MS.gene82571 | 0.979754 | 1.15E-148 | -1.69E-46 |
| MS.gene054596 | MS.gene82571 | 0.824731 | 6.89E-54 | -1.69E-46 |
| MS.gene055359 | MS.gene82571 | 0.88556 | 7.32E-72 | -1.69E-46 |
| MS.gene057022 | MS.gene82571 | 0.810491 | 1.12E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene82571 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene82571 | 0.886604 | 2.96E-72 | -1.69E-46 |
| MS.gene059632 | MS.gene82571 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene059768 | MS.gene82571 | 0.845842 | 3.16E-59 | -1.69E-46 |
| MS.gene060513 | MS.gene82571 | 0.802196 | 6.29E-49 | -1.69E-46 |
| MS.gene060691 | MS.gene82571 | 0.857068 | 2.10E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82571.t1 | MTR_6g084420 | 97.101 | 345 | 10 | 0 | 5 | 349 | 1 | 345 | 0.0 | 695 |
| MS.gene82571.t1 | MTR_7g007260 | 65.964 | 332 | 112 | 1 | 10 | 341 | 7 | 337 | 1.54e-165 | 466 |
| MS.gene82571.t1 | MTR_6g018490 | 62.832 | 339 | 125 | 1 | 5 | 343 | 1 | 338 | 6.67e-161 | 454 |
| MS.gene82571.t1 | MTR_7g007260 | 63.554 | 332 | 107 | 2 | 10 | 341 | 7 | 324 | 1.22e-153 | 435 |
| MS.gene82571.t1 | MTR_7g007260 | 63.363 | 333 | 107 | 3 | 10 | 341 | 7 | 325 | 7.16e-152 | 431 |
| MS.gene82571.t1 | MTR_5g056550 | 54.118 | 340 | 154 | 2 | 8 | 346 | 57 | 395 | 2.98e-140 | 403 |
| MS.gene82571.t1 | MTR_6g025610 | 63.668 | 289 | 104 | 1 | 55 | 343 | 41 | 328 | 7.72e-138 | 395 |
| MS.gene82571.t1 | MTR_1g110670 | 53.205 | 312 | 144 | 2 | 34 | 344 | 49 | 359 | 1.17e-122 | 357 |
| MS.gene82571.t1 | MTR_5g056550 | 48.824 | 340 | 139 | 3 | 8 | 346 | 57 | 362 | 1.06e-117 | 345 |
| MS.gene82571.t1 | MTR_1g088470 | 45.361 | 291 | 158 | 1 | 59 | 349 | 9 | 298 | 7.67e-89 | 270 |
| MS.gene82571.t1 | MTR_7g108770 | 44.251 | 287 | 158 | 2 | 59 | 345 | 9 | 293 | 3.77e-85 | 261 |
| MS.gene82571.t1 | MTR_1g115535 | 41.554 | 296 | 172 | 1 | 47 | 342 | 3 | 297 | 6.65e-81 | 249 |
| MS.gene82571.t1 | MTR_5g056550 | 55.497 | 191 | 84 | 1 | 8 | 197 | 57 | 247 | 1.25e-80 | 247 |
| MS.gene82571.t1 | MTR_1g115535 | 42.361 | 288 | 165 | 1 | 55 | 342 | 7 | 293 | 1.38e-80 | 248 |
| MS.gene82571.t1 | MTR_5g056550 | 56.383 | 188 | 81 | 1 | 8 | 194 | 57 | 244 | 1.42e-80 | 246 |
| MS.gene82571.t1 | MTR_4g089170 | 39.855 | 276 | 164 | 2 | 66 | 340 | 47 | 321 | 2.83e-72 | 228 |
| MS.gene82571.t1 | MTR_1g095110 | 36.207 | 290 | 179 | 5 | 61 | 347 | 34 | 320 | 9.24e-57 | 187 |
| MS.gene82571.t1 | MTR_4g127220 | 37.906 | 277 | 164 | 4 | 69 | 341 | 41 | 313 | 9.29e-57 | 187 |
| MS.gene82571.t1 | MTR_6g071475 | 31.408 | 277 | 178 | 7 | 66 | 340 | 122 | 388 | 2.29e-30 | 119 |
| MS.gene82571.t1 | MTR_3g109870 | 29.021 | 286 | 160 | 9 | 66 | 342 | 103 | 354 | 3.04e-20 | 90.9 |
| MS.gene82571.t1 | MTR_1g110680 | 36.111 | 108 | 65 | 1 | 237 | 344 | 3 | 106 | 1.69e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82571.t1 | AT5G16120 | 61.446 | 332 | 127 | 1 | 12 | 343 | 10 | 340 | 1.41e-162 | 458 |
| MS.gene82571.t1 | AT5G16120 | 61.446 | 332 | 127 | 1 | 12 | 343 | 10 | 340 | 1.41e-162 | 458 |
| MS.gene82571.t1 | AT5G16120 | 61.446 | 332 | 127 | 1 | 12 | 343 | 28 | 358 | 1.76e-162 | 459 |
| MS.gene82571.t1 | AT5G16120 | 61.446 | 332 | 127 | 1 | 12 | 343 | 42 | 372 | 3.21e-162 | 459 |
| MS.gene82571.t1 | AT1G77420 | 51.765 | 340 | 162 | 2 | 8 | 346 | 44 | 382 | 2.47e-133 | 385 |
| MS.gene82571.t1 | AT3G62860 | 44.755 | 286 | 156 | 2 | 58 | 343 | 9 | 292 | 1.84e-86 | 265 |
| MS.gene82571.t1 | AT2G39420 | 44.828 | 290 | 159 | 1 | 52 | 341 | 5 | 293 | 5.31e-86 | 262 |
| MS.gene82571.t1 | AT2G47630 | 45.936 | 283 | 151 | 2 | 59 | 340 | 10 | 291 | 3.80e-84 | 259 |
| MS.gene82571.t1 | AT2G39410 | 42.857 | 294 | 167 | 1 | 50 | 343 | 3 | 295 | 1.68e-80 | 248 |
| MS.gene82571.t1 | AT1G11090 | 41.000 | 300 | 172 | 3 | 54 | 349 | 26 | 324 | 6.04e-80 | 247 |
| MS.gene82571.t1 | AT2G39400 | 43.103 | 290 | 164 | 1 | 55 | 344 | 2 | 290 | 8.87e-78 | 241 |
| MS.gene82571.t1 | AT3G55180 | 42.034 | 295 | 169 | 2 | 55 | 348 | 2 | 295 | 1.49e-76 | 238 |
| MS.gene82571.t1 | AT3G62860 | 44.980 | 249 | 136 | 1 | 96 | 344 | 3 | 250 | 4.00e-75 | 234 |
| MS.gene82571.t1 | AT2G47630 | 45.714 | 245 | 132 | 1 | 96 | 340 | 3 | 246 | 2.37e-72 | 227 |
| MS.gene82571.t1 | AT2G47630 | 46.444 | 239 | 127 | 1 | 106 | 344 | 33 | 270 | 5.78e-72 | 227 |
| MS.gene82571.t1 | AT3G55190 | 39.322 | 295 | 178 | 1 | 52 | 345 | 4 | 298 | 1.47e-70 | 223 |
| MS.gene82571.t1 | AT5G14980 | 31.741 | 293 | 199 | 1 | 55 | 347 | 29 | 320 | 1.45e-58 | 192 |
| MS.gene82571.t1 | AT5G19290 | 32.095 | 296 | 197 | 3 | 55 | 348 | 29 | 322 | 1.72e-56 | 187 |
| MS.gene82571.t1 | AT1G52760 | 35.374 | 294 | 181 | 5 | 52 | 341 | 34 | 322 | 4.31e-56 | 186 |
| MS.gene82571.t1 | AT2G39400 | 42.534 | 221 | 126 | 1 | 55 | 275 | 2 | 221 | 2.09e-55 | 181 |
| MS.gene82571.t1 | AT1G73480 | 32.573 | 307 | 192 | 9 | 40 | 342 | 167 | 462 | 7.48e-36 | 135 |
| MS.gene82571.t1 | AT5G11650 | 31.307 | 329 | 193 | 11 | 26 | 339 | 65 | 375 | 2.41e-33 | 127 |
| MS.gene82571.t1 | AT1G18360 | 31.068 | 309 | 195 | 11 | 40 | 342 | 85 | 381 | 4.77e-31 | 121 |
| MS.gene82571.t1 | AT2G39410 | 37.736 | 106 | 66 | 0 | 50 | 155 | 3 | 108 | 2.76e-23 | 93.6 |
| MS.gene82571.t1 | AT5G11650 | 34.416 | 154 | 91 | 4 | 26 | 173 | 65 | 214 | 4.07e-19 | 87.0 |
Find 65 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGATCATTGCTTATTTC+AGG | 0.168837 | 6.3:-78701484 | MS.gene82571:intron |
| GGCCTTTCTGATGGTCTTCA+TGG | 0.251668 | 6.3:-78700190 | MS.gene82571:CDS |
| TTGTGGAACTAACTTAGTTT+TGG | 0.267252 | 6.3:+78697969 | None:intergenic |
| GAGAGCAATGTTGATAGAAA+TGG | 0.296628 | 6.3:-78701616 | None:intergenic |
| TTAGGTTTCTCTGCCATTAT+TGG | 0.301593 | 6.3:-78696862 | MS.gene82571:intron |
| GCATTGGATTATCCTGGATT+TGG | 0.311932 | 6.3:-78700211 | MS.gene82571:CDS |
| CTTGTAAAATAACACATTAT+AGG | 0.353208 | 6.3:+78697659 | None:intergenic |
| TCTCCATGCATGACCAATAA+TGG | 0.365229 | 6.3:+78696849 | None:intergenic |
| TTGTAAAATAACACATTATA+GGG | 0.370829 | 6.3:+78697660 | None:intergenic |
| AAGTTAGCATCATCTGGATT+TGG | 0.386995 | 6.3:-78700241 | MS.gene82571:CDS |
| TCACGAGCAAGTCTTCTTGC+AGG | 0.399430 | 6.3:+78701531 | None:intergenic |
| TGCTTGATGATATTATATCT+TGG | 0.399615 | 6.3:-78696689 | MS.gene82571:CDS |
| TAAAAGTATTCTCTAAAAGT+TGG | 0.404034 | 6.3:-78700472 | MS.gene82571:CDS |
| AGAGCAATGTTGATAGAAAT+GGG | 0.405253 | 6.3:-78701615 | None:intergenic |
| TCCAAAGCTGTTCCTAGTCT+TGG | 0.412220 | 6.3:+78697630 | None:intergenic |
| GTATTTGCATTGGATTATCC+TGG | 0.418401 | 6.3:-78700217 | MS.gene82571:CDS |
| CCTGGATTTGGCCTTTCTGA+TGG | 0.419264 | 6.3:-78700199 | MS.gene82571:CDS |
| TAACAAACAATGGCCTTCAT+AGG | 0.423794 | 6.3:+78700434 | None:intergenic |
| GCAAGGAAGTTAGCATCATC+TGG | 0.425906 | 6.3:-78700247 | MS.gene82571:CDS |
| AATTTACCAAGCTTCTTGTT+AGG | 0.432821 | 6.3:-78699459 | MS.gene82571:CDS |
| CTTCTTGTTAGGCGAGTCAA+TGG | 0.445279 | 6.3:-78699448 | MS.gene82571:CDS |
| ACCAAGACTAGGAACAGCTT+TGG | 0.447184 | 6.3:-78697631 | MS.gene82571:CDS |
| ACAAGAGCTAGAACAAAGAT+TGG | 0.453331 | 6.3:-78697592 | MS.gene82571:CDS |
| TTGGTGAAGCAAATACTAAT+TGG | 0.467466 | 6.3:-78698009 | MS.gene82571:CDS |
| GCCATTGTTTGTTATTGTCA+TGG | 0.480168 | 6.3:-78700425 | MS.gene82571:CDS |
| CTGAAATAAGCAATGATCAA+TGG | 0.484684 | 6.3:+78701485 | None:intergenic |
| ATAGAAATGGGAGAAATAGA+AGG | 0.489695 | 6.3:-78701603 | MS.gene82571:CDS |
| AACTAAGTTAGTTCCACAAA+AGG | 0.503876 | 6.3:-78697965 | MS.gene82571:CDS |
| GTTCACCCTCTAGAAGTGTA+TGG | 0.511259 | 6.3:+78696733 | None:intergenic |
| GACTCGCCTAACAAGAAGCT+TGG | 0.515987 | 6.3:+78699453 | None:intergenic |
| TGGATTTGGAGTATTTGCAT+TGG | 0.516167 | 6.3:-78700227 | MS.gene82571:CDS |
| GGATATGATTCCACATTGGT+TGG | 0.516523 | 6.3:-78698028 | MS.gene82571:CDS |
| TCCATCTTCACTCCATCAGC+TGG | 0.516769 | 6.3:+78700764 | None:intergenic |
| TCTTATTGCACCTTTGTGCA+AGG | 0.518796 | 6.3:-78699367 | MS.gene82571:intron |
| CCATCAGAAAGGCCAAATCC+AGG | 0.524054 | 6.3:+78700199 | None:intergenic |
| CTGCCATTATTGGTCATGCA+TGG | 0.530213 | 6.3:-78696852 | MS.gene82571:CDS |
| AATACTAATTGGTGTAGCTA+AGG | 0.532434 | 6.3:-78697998 | MS.gene82571:CDS |
| TACAATGCCTTGCTAGCTGA+TGG | 0.536619 | 6.3:+78696807 | None:intergenic |
| AGAAATAGAAGGAATGAGTG+AGG | 0.538123 | 6.3:-78701592 | MS.gene82571:CDS |
| ACCAGCTGATGGAGTGAAGA+TGG | 0.540478 | 6.3:-78700765 | MS.gene82571:CDS |
| TGCAGGTGCCTCGTCCATGT+TGG | 0.541307 | 6.3:+78701548 | None:intergenic |
| TTTCAAACAACCTACTGCAT+GGG | 0.547182 | 6.3:-78699400 | MS.gene82571:CDS |
| AACTGATCCATCAGCTAGCA+AGG | 0.547422 | 6.3:-78696814 | MS.gene82571:CDS |
| ATTTCAAACAACCTACTGCA+TGG | 0.552822 | 6.3:-78699401 | MS.gene82571:CDS |
| TTCTTGTTAGGCGAGTCAAT+GGG | 0.570533 | 6.3:-78699447 | MS.gene82571:CDS |
| TGCAAGAAGACTTGCTCGTG+AGG | 0.575045 | 6.3:-78701529 | MS.gene82571:CDS |
| TTATTTGTCCAACATGGACG+AGG | 0.580443 | 6.3:-78701556 | MS.gene82571:CDS |
| AACCATGAAGACCATCAGAA+AGG | 0.582051 | 6.3:+78700188 | None:intergenic |
| ACCATGACAATAACAAACAA+TGG | 0.586205 | 6.3:+78700424 | None:intergenic |
| AGTTTGAATGACAGAACAAG+TGG | 0.590912 | 6.3:-78699490 | MS.gene82571:intron |
| TGCCTTCCATACACTTCTAG+AGG | 0.592359 | 6.3:-78696739 | MS.gene82571:CDS |
| CAGAGGATATGATTCCACAT+TGG | 0.593878 | 6.3:-78698032 | MS.gene82571:CDS |
| ACCCTCTAGAAGTGTATGGA+AGG | 0.598219 | 6.3:+78696737 | None:intergenic |
| CTCTATTGAACAGTTTGCAG+AGG | 0.601438 | 6.3:-78698049 | MS.gene82571:intron |
| AAGCATTTATTTGTCCAACA+TGG | 0.603692 | 6.3:-78701562 | MS.gene82571:CDS |
| GTTTATGAAGTGAACTCAAG+AGG | 0.605140 | 6.3:-78700497 | MS.gene82571:CDS |
| GAATGAGATACCTTGCACAA+AGG | 0.610625 | 6.3:+78699357 | None:intergenic |
| GCAGCACCATCCCATGCAGT+AGG | 0.619128 | 6.3:+78699390 | None:intergenic |
| TACAAGGATAAACCAAGACT+AGG | 0.619655 | 6.3:-78697642 | MS.gene82571:CDS |
| AAACAACCTACTGCATGGGA+TGG | 0.621228 | 6.3:-78699396 | MS.gene82571:CDS |
| TTGTTAGGCGAGTCAATGGG+AGG | 0.640819 | 6.3:-78699444 | MS.gene82571:CDS |
| ATTTGCTTCACCAACCAATG+TGG | 0.645634 | 6.3:+78698018 | None:intergenic |
| GCCTTCCATACACTTCTAGA+GGG | 0.655558 | 6.3:-78696738 | MS.gene82571:CDS |
| TGATGGAGTGAAGATGGACG+AGG | 0.668726 | 6.3:-78700759 | MS.gene82571:intron |
| ATTATTGGTCATGCATGGAG+AGG | 0.688426 | 6.3:-78696847 | MS.gene82571:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCATATAAAAATTAAA+TGG | - | chr6.3:78698312-78698331 | MS.gene82571:intron | 10.0% |
| !! | TAAATAATACTTCAATAATA+TGG | - | chr6.3:78699964-78699983 | MS.gene82571:intron | 10.0% |
| !!! | AATTTATTTTTCTTAAATAG+TGG | - | chr6.3:78699480-78699499 | MS.gene82571:intron | 10.0% |
| !!! | CTAAAAAAATATTTTCATTA+AGG | + | chr6.3:78700872-78700891 | None:intergenic | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+GGG | + | chr6.3:78699313-78699332 | None:intergenic | 10.0% |
| !!! | TTTGAAATTATAAAAATTAG+AGG | + | chr6.3:78699803-78699822 | None:intergenic | 10.0% |
| !!! | TTTTATAATTTAAATGTCAA+TGG | + | chr6.3:78699453-78699472 | None:intergenic | 10.0% |
| !! | AAATAATGAAAATGAGAAAT+TGG | + | chr6.3:78698726-78698745 | None:intergenic | 15.0% |
| !! | AAATATAAGAAATAAGAATC+TGG | + | chr6.3:78697662-78697681 | None:intergenic | 15.0% |
| !! | AATAATCTTTGTATACTTTA+AGG | - | chr6.3:78698284-78698303 | MS.gene82571:intron | 15.0% |
| !! | ACAATATAAGAAATAAGAAT+GGG | - | chr6.3:78697570-78697589 | MS.gene82571:intron | 15.0% |
| !! | AGTGCATATTTAATTATTAA+GGG | - | chr6.3:78699561-78699580 | MS.gene82571:intron | 15.0% |
| !! | ATATTCTGAATAAGAATTTA+GGG | - | chr6.3:78700787-78700806 | MS.gene82571:intron | 15.0% |
| !! | CTAAATTGAATAATGTTATT+TGG | + | chr6.3:78700847-78700866 | None:intergenic | 15.0% |
| !! | GTAAACATTTGAAAAAAAAA+CGG | + | chr6.3:78698668-78698687 | None:intergenic | 15.0% |
| !! | TAAACATTTGAAAAAAAAAC+GGG | + | chr6.3:78698667-78698686 | None:intergenic | 15.0% |
| !! | TAGTGCATATTTAATTATTA+AGG | - | chr6.3:78699560-78699579 | MS.gene82571:intron | 15.0% |
| !! | TTGTAAAATAACACATTATA+GGG | + | chr6.3:78700605-78700624 | None:intergenic | 15.0% |
| !!! | AAATATGTTTGACTTTTTTT+AGG | - | chr6.3:78697634-78697653 | MS.gene82571:CDS | 15.0% |
| !!! | AAATTAGAGGATTATATTTT+TGG | + | chr6.3:78699790-78699809 | None:intergenic | 15.0% |
| !!! | AATATGTTTGACTTTTTTTA+GGG | - | chr6.3:78697635-78697654 | MS.gene82571:CDS | 15.0% |
| !!! | AATTTCAAATAATTTTGTAC+AGG | - | chr6.3:78697743-78697762 | MS.gene82571:intron | 15.0% |
| !!! | ATTTTTTTCATTTACTTTGA+TGG | + | chr6.3:78700902-78700921 | None:intergenic | 15.0% |
| !!! | GTTGTTTCATATTTTATAAT+AGG | + | chr6.3:78699314-78699333 | None:intergenic | 15.0% |
| !!! | TATATTTTTGGATTTAGAAA+TGG | + | chr6.3:78699778-78699797 | None:intergenic | 15.0% |
| !!! | TCTTTTGGAAATAAAATTTT+AGG | - | chr6.3:78699908-78699927 | MS.gene82571:intron | 15.0% |
| !!! | TGTATATTTTAACATAAGAA+AGG | - | chr6.3:78699651-78699670 | MS.gene82571:intron | 15.0% |
| !!! | TGTATATTTTAACATAAGAT+GGG | + | chr6.3:78699022-78699041 | None:intergenic | 15.0% |
| !!! | TTAGTAATATTTAGGATTAT+AGG | + | chr6.3:78700185-78700204 | None:intergenic | 15.0% |
| !!! | TTTATCTTGTATTTTTTATC+AGG | - | chr6.3:78697988-78698007 | MS.gene82571:CDS | 15.0% |
| !! | AAAAACTAAGACAATATTTC+TGG | - | chr6.3:78700108-78700127 | MS.gene82571:intron | 20.0% |
| !! | AAAATAAGCCTAAAATTTAG+AGG | + | chr6.3:78699836-78699855 | None:intergenic | 20.0% |
| !! | AAAATGAGAAATTGGTATAA+GGG | + | chr6.3:78698718-78698737 | None:intergenic | 20.0% |
| !! | AATCATGAATAAGAAGAAAT+TGG | + | chr6.3:78699746-78699765 | None:intergenic | 20.0% |
| !! | ATAATTAATTCAAGCATTCA+TGG | + | chr6.3:78700517-78700536 | None:intergenic | 20.0% |
| !! | CAATATAAGAAATAAGAATG+GGG | - | chr6.3:78697571-78697590 | MS.gene82571:intron | 20.0% |
| !! | CATATTTAATTATTAAGGGA+GGG | - | chr6.3:78699565-78699584 | MS.gene82571:intron | 20.0% |
| !! | CATCAAAACAATTAAAATTG+TGG | - | chr6.3:78700952-78700971 | MS.gene82571:intron | 20.0% |
| !! | CTTGTAAAATAACACATTAT+AGG | + | chr6.3:78700606-78700625 | None:intergenic | 20.0% |
| !! | GAACATTTCTCAAAAATAAA+AGG | - | chr6.3:78698135-78698154 | MS.gene82571:intron | 20.0% |
| !! | GACAATATAAGAAATAAGAA+TGG | - | chr6.3:78697569-78697588 | MS.gene82571:intron | 20.0% |
| !! | GATATTCTGAATAAGAATTT+AGG | - | chr6.3:78700786-78700805 | MS.gene82571:intron | 20.0% |
| !! | TAAAAAGAAAGTAACTAAGA+TGG | + | chr6.3:78700711-78700730 | None:intergenic | 20.0% |
| !! | TAATTAATTCAAGCATTCAT+GGG | + | chr6.3:78700516-78700535 | None:intergenic | 20.0% |
| !! | TCGTTATTTAAAAAAGTTAC+TGG | - | chr6.3:78698415-78698434 | MS.gene82571:intron | 20.0% |
| !! | TTTATCATCCAAATCATTTA+TGG | + | chr6.3:78698474-78698493 | None:intergenic | 20.0% |
| !!! | AATTTAACCAATTTGAAGTT+TGG | + | chr6.3:78697299-78697318 | None:intergenic | 20.0% |
| !!! | AGTATAAATCTTACTTTTCA+AGG | - | chr6.3:78699620-78699639 | MS.gene82571:intron | 20.0% |
| !!! | ATTTTTTGACCTTATTTTCT+TGG | + | chr6.3:78697618-78697637 | None:intergenic | 20.0% |
| !!! | CAAATTTTAGAACTTGAATA+GGG | + | chr6.3:78701197-78701216 | None:intergenic | 20.0% |
| !!! | CTAATATGTTTTGAATATCA+GGG | + | chr6.3:78699053-78699072 | None:intergenic | 20.0% |
| !!! | CTAATTTTGATTTTTGTTCT+AGG | - | chr6.3:78700577-78700596 | MS.gene82571:intron | 20.0% |
| !!! | CTATAATGTGTTATTTTACA+AGG | - | chr6.3:78700604-78700623 | MS.gene82571:intron | 20.0% |
| !!! | GATACATAAGTTTTTTCTTT+AGG | - | chr6.3:78697233-78697252 | MS.gene82571:intron | 20.0% |
| !!! | GTATAAATCTTACTTTTCAA+GGG | - | chr6.3:78699621-78699640 | MS.gene82571:intron | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+TGG | + | chr6.3:78699669-78699650 | None:intergenic | 20.0% |
| !!! | TAAAAGTATTCTCTAAAAGT+TGG | - | chr6.3:78697790-78697809 | MS.gene82571:intron | 20.0% |
| !!! | TAATATGTTTTGAATATCAG+GGG | + | chr6.3:78699052-78699071 | None:intergenic | 20.0% |
| !!! | TATTGTATGATTTGAAACAA+AGG | + | chr6.3:78698173-78698192 | None:intergenic | 20.0% |
| !!! | TCAAATTTTAGAACTTGAAT+AGG | + | chr6.3:78701198-78701217 | None:intergenic | 20.0% |
| !!! | TCTAATATGTTTTGAATATC+AGG | + | chr6.3:78699054-78699073 | None:intergenic | 20.0% |
| !!! | TGGTTAGTTTAGTAATATTT+AGG | + | chr6.3:78700193-78700212 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTATTCATGATTT+TGG | - | chr6.3:78699747-78699766 | MS.gene82571:intron | 20.0% |
| ! | AACCATAAAGAATGAGATAA+AGG | + | chr6.3:78698216-78698235 | None:intergenic | 25.0% |
| ! | AACTTTGAACCTTTATCTTA+AGG | - | chr6.3:78701136-78701155 | MS.gene82571:intron | 25.0% |
| ! | AAGTAATGACCTTAAGATAA+AGG | + | chr6.3:78701148-78701167 | None:intergenic | 25.0% |
| ! | AATAAAATATCCAAACAGAG+AGG | - | chr6.3:78697429-78697448 | MS.gene82571:intron | 25.0% |
| ! | AATGTTTGACCAATTTGTAT+AGG | - | chr6.3:78698372-78698391 | MS.gene82571:intron | 25.0% |
| ! | ACATACATATTTGAACATCA+AGG | - | chr6.3:78696834-78696853 | MS.gene82571:CDS | 25.0% |
| ! | ACATGAAAAATAGTTTCATC+AGG | + | chr6.3:78701554-78701573 | None:intergenic | 25.0% |
| ! | ATTGAGTCAAAAAGTTGAAA+GGG | + | chr6.3:78697686-78697705 | None:intergenic | 25.0% |
| ! | CTTCAAAAAAATAGTATTGC+AGG | - | chr6.3:78699208-78699227 | MS.gene82571:intron | 25.0% |
| ! | GAAAATGAGAAATTGGTATA+AGG | + | chr6.3:78698719-78698738 | None:intergenic | 25.0% |
| ! | GCATATTTAATTATTAAGGG+AGG | - | chr6.3:78699564-78699583 | MS.gene82571:intron | 25.0% |
| ! | GTGACTATTAATGAATTGTT+AGG | - | chr6.3:78701382-78701401 | MS.gene82571:intron | 25.0% |
| ! | TATCTATCCAAACTTCAAAT+TGG | - | chr6.3:78697289-78697308 | MS.gene82571:intron | 25.0% |
| ! | TATTGAGTCAAAAAGTTGAA+AGG | + | chr6.3:78697687-78697706 | None:intergenic | 25.0% |
| ! | TCAATTGTAGGAAAAATTTC+TGG | - | chr6.3:78700079-78700098 | MS.gene82571:intron | 25.0% |
| ! | TGTAATTCAAGCATCATATA+GGG | - | chr6.3:78699591-78699610 | MS.gene82571:intron | 25.0% |
| ! | TTATAGAATGATACACAAGT+TGG | - | chr6.3:78697052-78697071 | MS.gene82571:intron | 25.0% |
| ! | TTCCTTTATCTCATTCTTTA+TGG | - | chr6.3:78698211-78698230 | MS.gene82571:intron | 25.0% |
| ! | TTGTAATTCAAGCATCATAT+AGG | - | chr6.3:78699590-78699609 | MS.gene82571:intron | 25.0% |
| ! | TTTAAAAATGAGACCGAAAT+CGG | + | chr6.3:78698632-78698651 | None:intergenic | 25.0% |
| !! | ATTGAAAGTTTTTCATTGCT+TGG | - | chr6.3:78697371-78697390 | MS.gene82571:intron | 25.0% |
| !! | ATTGTGTTTATTTCCCTTTT+TGG | - | chr6.3:78697175-78697194 | MS.gene82571:intron | 25.0% |
| !! | ATTTCTGGATTTAGAAATAG+AGG | - | chr6.3:78700123-78700142 | MS.gene82571:intron | 25.0% |
| !! | GCATACAAAGTATTAAGATA+AGG | + | chr6.3:78701332-78701351 | None:intergenic | 25.0% |
| !! | GCTTTTTGTTGAAATGTTTT+GGG | - | chr6.3:78698248-78698267 | MS.gene82571:intron | 25.0% |
| !! | GTAATTCAAGTTTCTCTTAA+GGG | + | chr6.3:78699093-78699112 | None:intergenic | 25.0% |
| !! | GTTTCAATGCATATTTCTTT+TGG | - | chr6.3:78699893-78699912 | MS.gene82571:intron | 25.0% |
| !! | TGAAGTTGATCTTCATATTA+AGG | + | chr6.3:78700757-78700776 | None:intergenic | 25.0% |
| !! | TGCTTGATGATATTATATCT+TGG | - | chr6.3:78701573-78701592 | MS.gene82571:CDS | 25.0% |
| !! | TGTAATTCAAGCATCTTTTA+GGG | + | chr6.3:78698992-78699011 | None:intergenic | 25.0% |
| !! | TGTAATTCAAGTTTCTCTTA+AGG | + | chr6.3:78699094-78699113 | None:intergenic | 25.0% |
| !!! | AGTGTAGATTTTAACATAAG+AGG | + | chr6.3:78699126-78699145 | None:intergenic | 25.0% |
| !!! | ATATTTTAACATAAGATGGG+AGG | + | chr6.3:78699019-78699038 | None:intergenic | 25.0% |
| !!! | CACTTTTTTTTTAAGAGAAG+TGG | - | chr6.3:78696912-78696931 | MS.gene82571:intron | 25.0% |
| !!! | GCATGTGGAAATTTTTAAAA+GGG | - | chr6.3:78697197-78697216 | MS.gene82571:intron | 25.0% |
| !!! | GTGTAGATTTTAACATAAGA+GGG | + | chr6.3:78699125-78699144 | None:intergenic | 25.0% |
| !!! | TGCTTTTTGTTGAAATGTTT+TGG | - | chr6.3:78698247-78698266 | MS.gene82571:intron | 25.0% |
| AAAATTTCCACATGCCAAAA+AGG | + | chr6.3:78697192-78697211 | None:intergenic | 30.0% | |
| AAATTTCCACATGCCAAAAA+GGG | + | chr6.3:78697191-78697210 | None:intergenic | 30.0% | |
| AACTAAGTTAGTTCCACAAA+AGG | - | chr6.3:78700297-78700316 | MS.gene82571:intron | 30.0% | |
| AAGCATTTATTTGTCCAACA+TGG | - | chr6.3:78696700-78696719 | MS.gene82571:CDS | 30.0% | |
| AATACTAATTGGTGTAGCTA+AGG | - | chr6.3:78700264-78700283 | MS.gene82571:intron | 30.0% | |
| AATTTACCAAGCTTCTTGTT+AGG | - | chr6.3:78698803-78698822 | MS.gene82571:intron | 30.0% | |
| ACCATGACAATAACAAACAA+TGG | + | chr6.3:78697841-78697860 | None:intergenic | 30.0% | |
| ATAGAAATGGGAGAAATAGA+AGG | - | chr6.3:78696659-78696678 | MS.gene82571:CDS | 30.0% | |
| CAAGTCACAAATTCAATTGT+AGG | - | chr6.3:78700067-78700086 | MS.gene82571:intron | 30.0% | |
| CATTGATCATTGCTTATTTC+AGG | - | chr6.3:78696778-78696797 | MS.gene82571:CDS | 30.0% | |
| CGATTCAACCATAAATGATT+TGG | - | chr6.3:78698463-78698482 | MS.gene82571:intron | 30.0% | |
| CTGAAATAAGCAATGATCAA+TGG | + | chr6.3:78696780-78696799 | None:intergenic | 30.0% | |
| GAAATGTTTCAACATGTTCT+TGG | - | chr6.3:78701216-78701235 | MS.gene82571:intron | 30.0% | |
| GATTCAAACCAACTAGTAAT+CGG | - | chr6.3:78698590-78698609 | MS.gene82571:intron | 30.0% | |
| GTAATTCAAGCATCATATAG+GGG | - | chr6.3:78699592-78699611 | MS.gene82571:intron | 30.0% | |
| TAATCGGTTAATGGCTAAAT+CGG | - | chr6.3:78698606-78698625 | MS.gene82571:intron | 30.0% | |
| TAATTCAAGCATCATATAGG+GGG | - | chr6.3:78699593-78699612 | MS.gene82571:intron | 30.0% | |
| TACTTGTGTGTGGAATTTAT+TGG | - | chr6.3:78701101-78701120 | MS.gene82571:intron | 30.0% | |
| TCATAGTCAAAGAGCTAAAA+GGG | - | chr6.3:78697547-78697566 | MS.gene82571:intron | 30.0% | |
| TCCATTAAATCGAACAATGT+CGG | + | chr6.3:78701007-78701026 | None:intergenic | 30.0% | |
| TCTATAATCCGAATTGCATA+AGG | - | chr6.3:78701271-78701290 | MS.gene82571:intron | 30.0% | |
| TCTTCAATGATGTATTGTCA+GGG | - | chr6.3:78700442-78700461 | MS.gene82571:CDS | 30.0% | |
| TGTAATTCAAGCTTCTCTTA+GGG | - | chr6.3:78699681-78699700 | MS.gene82571:intron | 30.0% | |
| TTCATAGTCAAAGAGCTAAA+AGG | - | chr6.3:78697546-78697565 | MS.gene82571:intron | 30.0% | |
| TTCTTCAATGATGTATTGTC+AGG | - | chr6.3:78700441-78700460 | MS.gene82571:CDS | 30.0% | |
| TTGAGTCAAAAAGTTGAAAG+GGG | + | chr6.3:78697685-78697704 | None:intergenic | 30.0% | |
| TTGGTGAAGCAAATACTAAT+TGG | - | chr6.3:78700253-78700272 | MS.gene82571:CDS | 30.0% | |
| ! | ACACTTCACCTCTAAATTTT+AGG | - | chr6.3:78699825-78699844 | MS.gene82571:intron | 30.0% |
| ! | CTCAGTCAAATTTTACACTA+AGG | + | chr6.3:78696958-78696977 | None:intergenic | 30.0% |
| ! | GGCATGTGGAAATTTTTAAA+AGG | - | chr6.3:78697196-78697215 | MS.gene82571:intron | 30.0% |
| ! | GTAATTCAAGCATCTTTTAG+GGG | + | chr6.3:78698991-78699010 | None:intergenic | 30.0% |
| ! | GTGTAATTCAAGCATCTTTT+AGG | + | chr6.3:78698993-78699012 | None:intergenic | 30.0% |
| ! | TAATTCAAGCATCTTTTAGG+GGG | + | chr6.3:78698990-78699009 | None:intergenic | 30.0% |
| ! | TAGTCACTTCAATGTTTTCA+AGG | + | chr6.3:78701369-78701388 | None:intergenic | 30.0% |
| ! | TGGCCTTCTCTTATTTATAA+GGG | + | chr6.3:78697598-78697617 | None:intergenic | 30.0% |
| ! | TTGACTAGATTTTCAAAGCT+AGG | + | chr6.3:78698105-78698124 | None:intergenic | 30.0% |
| ! | TTGGCCTTCTCTTATTTATA+AGG | + | chr6.3:78697599-78697618 | None:intergenic | 30.0% |
| ! | TTGTGGAACTAACTTAGTTT+TGG | + | chr6.3:78700296-78700315 | None:intergenic | 30.0% |
| !! | AAATCTTACTTTTCAAGGGA+GGG | - | chr6.3:78699625-78699644 | MS.gene82571:intron | 30.0% |
| !! | AATGTTGATTTACTTGTGTG+TGG | - | chr6.3:78701091-78701110 | MS.gene82571:intron | 30.0% |
| !! | ATTACTAGTTGGTTTGAATC+TGG | + | chr6.3:78698590-78698609 | None:intergenic | 30.0% |
| !! | GGAAATTTTTAAAAGGGAGA+AGG | - | chr6.3:78697203-78697222 | MS.gene82571:intron | 30.0% |
| !! | TAAATCTTACTTTTCAAGGG+AGG | - | chr6.3:78699624-78699643 | MS.gene82571:intron | 30.0% |
| !! | TGTGGAACTAACTTAGTTTT+GGG | + | chr6.3:78700295-78700314 | None:intergenic | 30.0% |
| !!! | ATTTTTTATCAGGAGTTGCA+AGG | - | chr6.3:78697998-78698017 | MS.gene82571:CDS | 30.0% |
| !!! | TGTCTTTGACTTTAGCTTTT+TGG | + | chr6.3:78701481-78701500 | None:intergenic | 30.0% |
| AAGAGAAGGCCAAGAAAATA+AGG | - | chr6.3:78697606-78697625 | MS.gene82571:CDS | 35.0% | |
| AAGTTAGCATCATCTGGATT+TGG | - | chr6.3:78698021-78698040 | MS.gene82571:CDS | 35.0% | |
| ACAAGAGCTAGAACAAAGAT+TGG | - | chr6.3:78700670-78700689 | MS.gene82571:intron | 35.0% | |
| ACCAACTAGTAATCGGTTAA+TGG | - | chr6.3:78698597-78698616 | MS.gene82571:intron | 35.0% | |
| ACCAGAAAAATCTCCTATGA+AGG | - | chr6.3:78697815-78697834 | MS.gene82571:intron | 35.0% | |
| ACCGACATTGTTCGATTTAA+TGG | - | chr6.3:78701003-78701022 | MS.gene82571:intron | 35.0% | |
| AGAAATAGAAGGAATGAGTG+AGG | - | chr6.3:78696670-78696689 | MS.gene82571:CDS | 35.0% | |
| AGTTTGAATGACAGAACAAG+TGG | - | chr6.3:78698772-78698791 | MS.gene82571:intron | 35.0% | |
| ATTTCAAACAACCTACTGCA+TGG | - | chr6.3:78698861-78698880 | MS.gene82571:intron | 35.0% | |
| GGACCCTTATAAATAAGAGA+AGG | - | chr6.3:78697592-78697611 | MS.gene82571:CDS | 35.0% | |
| GTAATTCAAGCTTCTCTTAG+GGG | - | chr6.3:78699682-78699701 | MS.gene82571:intron | 35.0% | |
| GTATTTGCATTGGATTATCC+TGG | - | chr6.3:78698045-78698064 | MS.gene82571:intron | 35.0% | |
| GTGTAATTCAAGCTTCTCTT+AGG | - | chr6.3:78699680-78699699 | MS.gene82571:intron | 35.0% | |
| GTTGAATCAGATTGAGCAAA+GGG | + | chr6.3:78698568-78698587 | None:intergenic | 35.0% | |
| GTTTATGAAGTGAACTCAAG+AGG | - | chr6.3:78697765-78697784 | MS.gene82571:intron | 35.0% | |
| GTTTCCACTCCTATACAAAT+TGG | + | chr6.3:78698384-78698403 | None:intergenic | 35.0% | |
| TAACAAACAATGGCCTTCAT+AGG | + | chr6.3:78697831-78697850 | None:intergenic | 35.0% | |
| TAATGAGCCAACAAATCACA+TGG | + | chr6.3:78700023-78700042 | None:intergenic | 35.0% | |
| TACAAGGATAAACCAAGACT+AGG | - | chr6.3:78700620-78700639 | MS.gene82571:intron | 35.0% | |
| TGATCAAGTGGAAATCTCTT+TGG | - | chr6.3:78697009-78697028 | MS.gene82571:intron | 35.0% | |
| TGCAATTAATCCTCTCTGTT+TGG | + | chr6.3:78697442-78697461 | None:intergenic | 35.0% | |
| TTAGGTTTCTCTGCCATTAT+TGG | - | chr6.3:78701400-78701419 | MS.gene82571:intron | 35.0% | |
| TTCGGATTATAGAATCCGAA+CGG | + | chr6.3:78701264-78701283 | None:intergenic | 35.0% | |
| TTGACCAATTTGTATAGGAG+TGG | - | chr6.3:78698377-78698396 | MS.gene82571:intron | 35.0% | |
| TTGTGTGTGGAATTTATTGG+CGG | - | chr6.3:78701104-78701123 | MS.gene82571:intron | 35.0% | |
| TTTCAAACAACCTACTGCAT+GGG | - | chr6.3:78698862-78698881 | MS.gene82571:intron | 35.0% | |
| ! | ACTTGCACGTTTTACTTTGA+AGG | - | chr6.3:78697870-78697889 | MS.gene82571:intron | 35.0% |
| ! | ATTCAAGTTTCTCTTAAGGG+AGG | + | chr6.3:78699090-78699109 | None:intergenic | 35.0% |
| ! | TATAGAGTGTTTATGCCGTT+CGG | - | chr6.3:78701246-78701265 | MS.gene82571:intron | 35.0% |
| ! | TCTTTCACTTCTTCCTTTTG+TGG | + | chr6.3:78700313-78700332 | None:intergenic | 35.0% |
| ! | TGGATTTGGAGTATTTGCAT+TGG | - | chr6.3:78698035-78698054 | MS.gene82571:CDS | 35.0% |
| ! | TTCAAGTTTCTCTTAAGGGA+GGG | + | chr6.3:78699089-78699108 | None:intergenic | 35.0% |
| !! | AATCTTACTTTTCAAGGGAG+GGG | - | chr6.3:78699626-78699645 | MS.gene82571:intron | 35.0% |
| !! | ATGTTTTGAATATCAGGGGA+GGG | + | chr6.3:78699048-78699067 | None:intergenic | 35.0% |
| !! | CACGTTTTACTTTGAAGGTA+TGG | - | chr6.3:78697875-78697894 | MS.gene82571:intron | 35.0% |
| !! | GCCATTGTTTGTTATTGTCA+TGG | - | chr6.3:78697837-78697856 | MS.gene82571:intron | 35.0% |
| !! | GTTCAACTGGTTCATACTTT+TGG | + | chr6.3:78698523-78698542 | None:intergenic | 35.0% |
| !! | TATGTTTTGAATATCAGGGG+AGG | + | chr6.3:78699049-78699068 | None:intergenic | 35.0% |
| !! | TTATTTCCCTTTTTGGCATG+TGG | - | chr6.3:78697182-78697201 | MS.gene82571:intron | 35.0% |
| AACCATGAAGACCATCAGAA+AGG | + | chr6.3:78698077-78698096 | None:intergenic | 40.0% | |
| ATTATTGGTCATGCATGGAG+AGG | - | chr6.3:78701415-78701434 | MS.gene82571:intron | 40.0% | |
| ATTTGCTTCACCAACCAATG+TGG | + | chr6.3:78700247-78700266 | None:intergenic | 40.0% | |
| CAAGTGGAAATCTCTTTGGA+GGG | - | chr6.3:78697013-78697032 | MS.gene82571:intron | 40.0% | |
| CAATGTGAGAGATGATCAAG+TGG | - | chr6.3:78696997-78697016 | MS.gene82571:intron | 40.0% | |
| CAGAGGATATGATTCCACAT+TGG | - | chr6.3:78700230-78700249 | MS.gene82571:CDS | 40.0% | |
| CTCTATTGAACAGTTTGCAG+AGG | - | chr6.3:78700213-78700232 | MS.gene82571:CDS | 40.0% | |
| CTGCAAACTGTTCAATAGAG+TGG | + | chr6.3:78700213-78700232 | None:intergenic | 40.0% | |
| GAATGAGATACCTTGCACAA+AGG | + | chr6.3:78698908-78698927 | None:intergenic | 40.0% | |
| GCATTGGATTATCCTGGATT+TGG | - | chr6.3:78698051-78698070 | MS.gene82571:intron | 40.0% | |
| GCCATTAACCGATTACTAGT+TGG | + | chr6.3:78698601-78698620 | None:intergenic | 40.0% | |
| GGATATGATTCCACATTGGT+TGG | - | chr6.3:78700234-78700253 | MS.gene82571:CDS | 40.0% | |
| GGTTGAATCAGATTGAGCAA+AGG | + | chr6.3:78698569-78698588 | None:intergenic | 40.0% | |
| TATATCTCGGATCGTTCAAC+TGG | + | chr6.3:78698536-78698555 | None:intergenic | 40.0% | |
| TCAAGTGGAAATCTCTTTGG+AGG | - | chr6.3:78697012-78697031 | MS.gene82571:intron | 40.0% | |
| TCTCCATGCATGACCAATAA+TGG | + | chr6.3:78701416-78701435 | None:intergenic | 40.0% | |
| TCTTATTGCACCTTTGTGCA+AGG | - | chr6.3:78698895-78698914 | MS.gene82571:intron | 40.0% | |
| TGAACGATCCGAGATATAAC+CGG | - | chr6.3:78698538-78698557 | MS.gene82571:intron | 40.0% | |
| TGAGAAATTGGTATAAGGGC+TGG | + | chr6.3:78698714-78698733 | None:intergenic | 40.0% | |
| TGTGGAATTTATTGGCGGTA+GGG | - | chr6.3:78701109-78701128 | MS.gene82571:intron | 40.0% | |
| TTATTTGTCCAACATGGACG+AGG | - | chr6.3:78696706-78696725 | MS.gene82571:CDS | 40.0% | |
| TTCTTGTTAGGCGAGTCAAT+GGG | - | chr6.3:78698815-78698834 | MS.gene82571:intron | 40.0% | |
| TTGATCATCTCTCACATTGC+TGG | + | chr6.3:78696996-78697015 | None:intergenic | 40.0% | |
| ! | GCCTTCATAGGAGATTTTTC+TGG | + | chr6.3:78697819-78697838 | None:intergenic | 40.0% |
| ! | TTTTTGCAGTTACCAGCTGA+TGG | - | chr6.3:78697486-78697505 | MS.gene82571:intron | 40.0% |
| !! | TGTTTTGAATATCAGGGGAG+GGG | + | chr6.3:78699047-78699066 | None:intergenic | 40.0% |
| AAACAACCTACTGCATGGGA+TGG | - | chr6.3:78698866-78698885 | MS.gene82571:intron | 45.0% | |
| AACTGATCCATCAGCTAGCA+AGG | - | chr6.3:78701448-78701467 | MS.gene82571:intron | 45.0% | |
| AGATTGAGCAAAGGGTGAAC+CGG | + | chr6.3:78698560-78698579 | None:intergenic | 45.0% | |
| AGGGTGAACCGGTTATATCT+CGG | + | chr6.3:78698549-78698568 | None:intergenic | 45.0% | |
| ATTCAAGCTTCTCTTAGGGG+AGG | - | chr6.3:78699685-78699704 | MS.gene82571:intron | 45.0% | |
| CTGCCATTATTGGTCATGCA+TGG | - | chr6.3:78701410-78701429 | MS.gene82571:intron | 45.0% | |
| CTTCTTGTTAGGCGAGTCAA+TGG | - | chr6.3:78698814-78698833 | MS.gene82571:intron | 45.0% | |
| GCAAGGAAGTTAGCATCATC+TGG | - | chr6.3:78698015-78698034 | MS.gene82571:CDS | 45.0% | |
| GCCTTCCATACACTTCTAGA+GGG | - | chr6.3:78701524-78701543 | MS.gene82571:CDS | 45.0% | |
| GTGTGGAATTTATTGGCGGT+AGG | - | chr6.3:78701108-78701127 | MS.gene82571:intron | 45.0% | |
| TACAATGCCTTGCTAGCTGA+TGG | + | chr6.3:78701458-78701477 | None:intergenic | 45.0% | |
| TGCCTTCCATACACTTCTAG+AGG | - | chr6.3:78701523-78701542 | MS.gene82571:CDS | 45.0% | |
| TTCAAGCATCATATAGGGGG+TGG | - | chr6.3:78699596-78699615 | MS.gene82571:intron | 45.0% | |
| TTCAAGCTTCTCTTAGGGGA+GGG | - | chr6.3:78699686-78699705 | MS.gene82571:intron | 45.0% | |
| ! | ACCCTCTAGAAGTGTATGGA+AGG | + | chr6.3:78701528-78701547 | None:intergenic | 45.0% |
| ! | ATGGCTAAATCGGCCGATTT+CGG | - | chr6.3:78698616-78698635 | MS.gene82571:intron | 45.0% |
| ! | CGCATCACCATGTGATTTGT+TGG | - | chr6.3:78700013-78700032 | MS.gene82571:intron | 45.0% |
| ! | GTTCACCCTCTAGAAGTGTA+TGG | + | chr6.3:78701532-78701551 | None:intergenic | 45.0% |
| !! | TTCAAGCATCTTTTAGGGGG+AGG | + | chr6.3:78698987-78699006 | None:intergenic | 45.0% |
| !! | ATAAATAAATAAATTATTGA+GGG | + | chr6.3:78699154-78699173 | None:intergenic | 5.0% |
| !! | TATAAATAAATAAATTATTG+AGG | + | chr6.3:78699155-78699174 | None:intergenic | 5.0% |
| !!! | ACATATTTTAATTTTATTTT+TGG | + | chr6.3:78699336-78699355 | None:intergenic | 5.0% |
| !!! | TAAAAAAATATTTTCATTAA+GGG | + | chr6.3:78700871-78700890 | None:intergenic | 5.0% |
| ACCAGCTGATGGAGTGAAGA+TGG | - | chr6.3:78697497-78697516 | MS.gene82571:intron | 50.0% | |
| CCATCAGAAAGGCCAAATCC+AGG | + | chr6.3:78698066-78698085 | None:intergenic | 50.0% | |
| CTCGTGCGCCTTATGCAATT+CGG | + | chr6.3:78701282-78701301 | None:intergenic | 50.0% | |
| GACTCGCCTAACAAGAAGCT+TGG | + | chr6.3:78698812-78698831 | None:intergenic | 50.0% | |
| GGCCTTTCTGATGGTCTTCA+TGG | - | chr6.3:78698072-78698091 | MS.gene82571:intron | 50.0% | |
| TCAAGCTTCTCTTAGGGGAG+GGG | - | chr6.3:78699687-78699706 | MS.gene82571:intron | 50.0% | |
| TCACGAGCAAGTCTTCTTGC+AGG | + | chr6.3:78696734-78696753 | None:intergenic | 50.0% | |
| TCCATCTTCACTCCATCAGC+TGG | + | chr6.3:78697501-78697520 | None:intergenic | 50.0% | |
| TGATGGAGTGAAGATGGACG+AGG | - | chr6.3:78697503-78697522 | MS.gene82571:intron | 50.0% | |
| TTGTTAGGCGAGTCAATGGG+AGG | - | chr6.3:78698818-78698837 | MS.gene82571:intron | 50.0% | |
| ! | CCTGGATTTGGCCTTTCTGA+TGG | - | chr6.3:78698063-78698082 | MS.gene82571:intron | 50.0% |
| ! | TGCAAGAAGACTTGCTCGTG+AGG | - | chr6.3:78696733-78696752 | MS.gene82571:CDS | 50.0% |
| !! | ATCTTTTAGGGGGAGGAGAG+GGG | + | chr6.3:78698980-78698999 | None:intergenic | 50.0% |
| !! | CATCTTTTAGGGGGAGGAGA+GGG | + | chr6.3:78698981-78699000 | None:intergenic | 50.0% |
| !! | GCATCTTTTAGGGGGAGGAG+AGG | + | chr6.3:78698982-78699001 | None:intergenic | 55.0% |
| GCAGCACCATCCCATGCAGT+AGG | + | chr6.3:78698875-78698894 | None:intergenic | 60.0% | |
| TGCAGGTGCCTCGTCCATGT+TGG | + | chr6.3:78696717-78696736 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 78696653 | 78701631 | 78696653 | ID=MS.gene82571 |
| chr6.3 | mRNA | 78696653 | 78701631 | 78696653 | ID=MS.gene82571.t1;Parent=MS.gene82571 |
| chr6.3 | exon | 78701485 | 78701631 | 78701485 | ID=MS.gene82571.t1.exon1;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78701485 | 78701631 | 78701485 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78700760 | 78700789 | 78700760 | ID=MS.gene82571.t1.exon2;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78700760 | 78700789 | 78700760 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78700393 | 78700519 | 78700393 | ID=MS.gene82571.t1.exon3;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78700393 | 78700519 | 78700393 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78700128 | 78700274 | 78700128 | ID=MS.gene82571.t1.exon4;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78700128 | 78700274 | 78700128 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78699368 | 78699498 | 78699368 | ID=MS.gene82571.t1.exon5;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78699368 | 78699498 | 78699368 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78697918 | 78698058 | 78697918 | ID=MS.gene82571.t1.exon6;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78697918 | 78698058 | 78697918 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78697587 | 78697685 | 78697587 | ID=MS.gene82571.t1.exon7;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78697587 | 78697685 | 78697587 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| chr6.3 | exon | 78696653 | 78696880 | 78696653 | ID=MS.gene82571.t1.exon8;Parent=MS.gene82571.t1 |
| chr6.3 | CDS | 78696653 | 78696880 | 78696653 | ID=cds.MS.gene82571.t1;Parent=MS.gene82571.t1 |
| Gene Sequence |
| Protein sequence |
