AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83120.t1 MTR_1g031180 95.652 299 13 0 18 316 18 316 0.0 596
MS.gene83120.t1 MTR_3g098470 75.974 308 74 0 9 316 4 311 0.0 507
MS.gene83120.t1 MTR_8g096060 71.667 300 82 1 17 316 14 310 2.17e-165 462
MS.gene83120.t1 MTR_4g087460 41.695 295 154 8 34 316 16 304 3.60e-71 223
MS.gene83120.t1 MTR_7g076660 39.792 289 149 6 42 316 9 286 6.81e-63 201
MS.gene83120.t1 MTR_8g031610 41.000 300 140 8 42 316 7 294 1.13e-62 201
MS.gene83120.t1 MTR_7g076660 39.792 289 149 6 42 316 10 287 1.37e-62 200
MS.gene83120.t1 MTR_8g031630 39.867 301 143 9 42 316 9 297 5.94e-62 199
MS.gene83120.t1 MTR_7g076655 39.792 289 149 6 42 316 9 286 2.42e-61 197
MS.gene83120.t1 MTR_5g062280 39.935 308 141 8 37 316 4 295 4.79e-61 196
MS.gene83120.t1 MTR_8g031600 40.264 303 144 7 40 316 7 298 4.04e-60 194
MS.gene83120.t1 MTR_8g031650 39.667 300 143 9 43 316 104 391 4.31e-60 197
MS.gene83120.t1 MTR_8g031650 34.711 121 68 4 182 297 2 116 5.33e-13 69.3
MS.gene83120.t1 MTR_8g032000 37.627 295 147 5 42 310 9 292 6.02e-60 194
MS.gene83120.t1 MTR_8g032010 37.374 297 149 5 38 308 5 290 3.48e-59 192
MS.gene83120.t1 MTR_8g031960 38.667 300 146 6 41 314 9 296 4.56e-59 191
MS.gene83120.t1 MTR_8g031980 37.294 303 152 6 39 315 6 296 7.79e-59 191
MS.gene83120.t1 MTR_8g031650 39.667 300 143 9 43 316 270 557 1.46e-58 197
MS.gene83120.t1 MTR_8g031650 38.947 285 134 9 42 297 9 282 9.16e-55 187
MS.gene83120.t1 MTR_8g031910 41.096 292 142 8 37 311 4 282 8.94e-58 188
MS.gene83120.t1 MTR_8g031990 36.066 305 158 6 38 316 5 298 3.86e-57 186
MS.gene83120.t1 MTR_8g031900 35.473 296 159 5 42 316 9 293 5.68e-57 186
MS.gene83120.t1 MTR_8g032020 36.424 302 154 6 42 316 10 300 8.26e-56 183
MS.gene83120.t1 MTR_3g079320 36.824 296 148 5 42 308 13 298 1.12e-55 183
MS.gene83120.t1 MTR_7g076665 36.577 298 155 6 42 316 9 295 2.85e-54 179
MS.gene83120.t1 MTR_7g076660 38.235 272 143 6 59 316 2 262 5.16e-54 177
MS.gene83120.t1 MTR_8g031940 38.095 294 144 8 42 308 9 291 1.01e-53 177
MS.gene83120.t1 MTR_7g106800 37.943 282 126 7 42 316 11 250 1.94e-47 160
MS.gene83120.t1 MTR_8g031850 32.374 278 154 4 42 316 9 255 2.54e-44 152
MS.gene83120.t1 MTR_5g083430 37.755 196 110 4 121 316 1 184 2.86e-35 126
MS.gene83120.t1 MTR_8g032030 39.645 169 74 5 39 180 6 173 1.02e-30 116
MS.gene83120.t1 MTR_3g068070 34.028 144 92 3 34 175 12 154 4.79e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83120.t1 AT5G51030 64.194 310 111 0 7 316 5 314 3.15e-160 449
MS.gene83120.t1 AT5G61830 66.134 313 103 2 7 316 4 316 1.13e-156 441
MS.gene83120.t1 AT5G61830 66.134 313 103 2 7 316 4 316 1.13e-156 441
MS.gene83120.t1 AT3G59710 45.936 283 142 5 28 308 7 280 2.41e-79 243
MS.gene83120.t1 AT3G59710 46.071 280 140 5 31 308 39 309 6.35e-78 241
MS.gene83120.t1 AT3G59710 45.390 282 143 5 29 308 18 290 8.12e-77 237
MS.gene83120.t1 AT3G61220 38.127 299 150 8 42 316 9 296 5.06e-58 189
MS.gene83120.t1 AT3G61220 38.127 299 150 8 42 316 16 303 7.57e-58 189
MS.gene83120.t1 AT3G61220 38.127 299 150 8 42 316 40 327 1.50e-57 189
MS.gene83120.t1 AT2G24190 37.248 298 151 8 42 315 9 294 3.21e-56 184
MS.gene83120.t1 AT2G24190 37.248 298 151 8 42 315 14 299 3.57e-56 184
MS.gene83120.t1 AT1G01800 34.884 301 160 7 41 316 6 295 2.84e-53 176
MS.gene83120.t1 AT1G01800 32.787 183 112 3 134 316 89 260 2.82e-26 105
MS.gene83120.t1 AT5G50130 25.890 309 170 13 30 315 27 299 1.48e-13 70.9
MS.gene83120.t1 AT5G50130 34.416 154 90 7 30 175 27 177 4.77e-13 68.6
MS.gene83120.t1 AT5G50130 34.416 154 90 7 30 175 27 177 5.16e-13 68.2
MS.gene83120.t1 AT5G50130 34.416 154 90 7 30 175 27 177 9.20e-13 68.2
MS.gene83120.t1 AT5G50130 34.416 154 90 7 30 175 27 177 9.44e-13 68.2
MS.gene83120.t1 AT5G50130 26.780 295 157 13 44 315 8 266 1.13e-11 65.1
MS.gene83120.t1 AT5G50130 27.458 295 154 13 44 315 8 265 3.56e-11 63.5
MS.gene83120.t1 AT1G63380 30.556 144 94 3 38 175 16 159 8.30e-11 62.0
MS.gene83120.t1 AT1G63380 30.556 144 94 3 38 175 23 166 8.52e-11 62.0
MS.gene83120.t1 AT5G50130 36.429 140 78 7 44 175 8 144 9.70e-11 62.0
MS.gene83120.t1 AT5G50130 36.429 140 78 7 44 175 8 144 9.81e-11 62.0
MS.gene83120.t1 AT1G63380 30.556 144 94 3 38 175 20 163 9.85e-11 62.0

Find 73 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGTGGTTTAGATATTC+TGG 0.214993 1.2:+16375116 MS.gene83120:CDS
TTGAAGAGATTAACCTTCTA+AGG 0.249355 1.2:+16374577 MS.gene83120:CDS
GTGCCGGTGCTGAATCAATT+AGG 0.250860 1.2:+16374998 MS.gene83120:CDS
GTTATCGAAACAAATTATTA+TGG 0.280899 1.2:+16375913 MS.gene83120:CDS
GCTGGTGTTAATTTCAATCT+TGG 0.282930 1.2:+16375859 MS.gene83120:CDS
TACCTTTGGTGATCGGAATA+AGG 0.301057 1.2:-16374606 None:intergenic
ATATGCATTAACAGCAAGTT+TGG 0.308682 1.2:-16376884 None:intergenic
ACCGGTGGAAACAGAGGAAT+TGG 0.324067 1.2:+16374910 MS.gene83120:CDS
GAAACTATTGCTGTGGTTAC+CGG 0.337618 1.2:+16374892 MS.gene83120:CDS
TATATGTAGGTGGTGGTCTA+AGG 0.345916 1.2:+16374870 MS.gene83120:intron
CAGTGGTTGCAGGAAAATTA+TGG 0.362541 1.2:+16375099 MS.gene83120:CDS
ACAACAGATGGTTTCATCAT+TGG 0.362823 1.2:-16375964 None:intergenic
AATAAGGAATAGACCTTAGA+AGG 0.365707 1.2:-16374590 None:intergenic
CTGCATGACCAAACAGTTAT+GGG 0.371616 1.2:+16377063 MS.gene83120:CDS
CCACTTTGTTCAGTGGTTGC+AGG 0.392622 1.2:+16375089 MS.gene83120:CDS
CTGGTGTTAATTTCAATCTT+GGG 0.397363 1.2:+16375860 MS.gene83120:CDS
GTTGATGAAGGAGCTGATAC+TGG 0.397844 1.2:+16377024 MS.gene83120:CDS
TGGGTGAAGACGGCTTTAAC+AGG 0.403091 1.2:+16376982 MS.gene83120:CDS
TCACGTCTAGGTCGACTAAA+TGG 0.403784 1.2:+16376012 MS.gene83120:CDS
TAATGCATATACAAGGCTTA+TGG 0.405823 1.2:+16376897 MS.gene83120:CDS
TGCCGGTGCTGAATCAATTA+GGG 0.411417 1.2:+16374999 MS.gene83120:CDS
AAGGAGCTGATACTGGAGTA+TGG 0.435415 1.2:+16377031 MS.gene83120:CDS
TCTGCATGACCAAACAGTTA+TGG 0.441007 1.2:+16377062 MS.gene83120:CDS
TTTCAGAGGAACTGATTGAC+AGG 0.453128 1.2:+16376776 MS.gene83120:CDS
GAAGATGGAAGCTGGACATC+AGG 0.461972 1.2:+16376826 MS.gene83120:CDS
CCACTGAACAAAGTGGTTGA+TGG 0.467844 1.2:-16375082 None:intergenic
ACAAGAAGGTGGTTTGGATG+TGG 0.467884 1.2:+16375026 MS.gene83120:CDS
CTCTGTTGAAAATGCTCGCA+AGG 0.489621 1.2:+16375891 MS.gene83120:CDS
TGTAGACAACTTGCTACTCA+TGG 0.493777 1.2:+16374943 MS.gene83120:CDS
TTAACTGCTATTGCCCGGGT+TGG 0.500994 1.2:+16376962 MS.gene83120:CDS
TAACTGCTATTGCCCGGGTT+GGG 0.501130 1.2:+16376963 MS.gene83120:CDS
AATCACCAATGTAGCCTTGA+GGG 0.505474 1.2:+16376729 MS.gene83120:CDS
AGATTGATACCTTTGGTGAT+CGG 0.520596 1.2:-16374613 None:intergenic
CCGGTGGAAACAGAGGAATT+GGG 0.522291 1.2:+16374911 MS.gene83120:CDS
AATGGGTAAGGCGGAGAAGA+AGG 0.522301 1.2:+16374524 None:intergenic
AAGAAGTAGAAGATGGAAGC+TGG 0.523692 1.2:+16376818 MS.gene83120:CDS
CCCAATTCCTCTGTTTCCAC+CGG 0.527914 1.2:-16374911 None:intergenic
CCATCAACCACTTTGTTCAG+TGG 0.531554 1.2:+16375082 MS.gene83120:CDS
TAACTGTTTGGTCATGCAGA+AGG 0.533186 1.2:-16377059 None:intergenic
GAGTAATCAGTATATATTTG+AGG 0.535718 1.2:-16376856 None:intergenic
TAATGGTAGGTAAACAATGC+TGG 0.537419 1.2:+16375841 MS.gene83120:intron
TTTGTTAACTGCTATTGCCC+GGG 0.539327 1.2:+16376958 MS.gene83120:CDS
TTGCCCGGGTTGGGTGAAGA+CGG 0.541413 1.2:+16376972 MS.gene83120:CDS
ATGATGAAACCATCTGTTGT+TGG 0.543637 1.2:+16375967 MS.gene83120:CDS
TTCCTTATTCCGATCACCAA+AGG 0.551276 1.2:+16374604 MS.gene83120:CDS
GGAAACAATACTGTTGATGA+AGG 0.553897 1.2:+16377012 MS.gene83120:CDS
TTGCTCCCTCAAGGCTACAT+TGG 0.555869 1.2:-16376734 None:intergenic
TGTTAATTTCAATCTTGGGT+CGG 0.555972 1.2:+16375864 MS.gene83120:CDS
TCACTGCATATAAATGGGTA+AGG 0.561657 1.2:+16374512 None:intergenic
TAATGTCGAGTTTCTTTCAG+AGG 0.562473 1.2:+16376762 MS.gene83120:CDS
CCTGCAACCACTGAACAAAG+TGG 0.566437 1.2:-16375089 None:intergenic
TTGCTGTTAATGCATATACA+AGG 0.568806 1.2:+16376890 MS.gene83120:CDS
AAAGCCGTCTTCACCCAACC+CGG 0.568919 1.2:-16376976 None:intergenic
GATGGAAGCTGGACATCAGG+TGG 0.570671 1.2:+16376829 MS.gene83120:CDS
AAGCTTTCTGAGCGACCAGA+AGG 0.588998 1.2:+16376925 MS.gene83120:CDS
ATTACTCAGTTGCTCCCTCA+AGG 0.591631 1.2:-16376743 None:intergenic
ATTCGAGCACCAACAACAGA+TGG 0.594225 1.2:-16375976 None:intergenic
AACTGTTTGGTCATGCAGAA+GGG 0.596240 1.2:-16377058 None:intergenic
AACCCTAATTGATTCAGCAC+CGG 0.597240 1.2:-16375001 None:intergenic
ACATCAAGAGATGCTAGTGC+CGG 0.610592 1.2:+16374982 MS.gene83120:CDS
GTCTAAGGAAACTATTGCTG+TGG 0.611318 1.2:+16374885 MS.gene83120:CDS
GTAAACGTAAGCTCACGTCT+AGG 0.620748 1.2:+16376000 MS.gene83120:CDS
TCAAATATATACTGATTACT+CGG 0.632162 1.2:+16376858 MS.gene83120:CDS
GTGGTTACCGGTGGAAACAG+AGG 0.633974 1.2:+16374904 MS.gene83120:CDS
CATATACAAGGCTTATGGTG+AGG 0.637017 1.2:+16376902 MS.gene83120:CDS
ATGGAAGCTGGACATCAGGT+GGG 0.637642 1.2:+16376830 MS.gene83120:CDS
ACTATTGCTGTGGTTACCGG+TGG 0.638100 1.2:+16374895 MS.gene83120:CDS
AAGCCGTCTTCACCCAACCC+GGG 0.642912 1.2:-16376975 None:intergenic
GAATCACCAATGTAGCCTTG+AGG 0.646638 1.2:+16376728 MS.gene83120:CDS
TGGTTGCAGGAAAATTATGG+TGG 0.649893 1.2:+16375102 MS.gene83120:CDS
GAAGCTGGACATCAGGTGGG+TGG 0.658112 1.2:+16376833 MS.gene83120:CDS
CTGCATATAAATGGGTAAGG+CGG 0.662103 1.2:+16374515 None:intergenic
TAAGGCGGAGAAGAAGGTGA+AGG 0.686757 1.2:+16374530 MS.gene83120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAAAAAATTATTAACGT+TGG - chr1.2:16376502-16376521 None:intergenic 15.0%
!! TTTCTAACTATTATCTTTAA+TGG + chr1.2:16375824-16375843 MS.gene83120:intron 15.0%
!!! TGCAATTTTTTTTTTTTAGT+AGG + chr1.2:16376213-16376232 MS.gene83120:intron 15.0%
!! AAATGTAGAAATGATAACAA+TGG + chr1.2:16376688-16376707 MS.gene83120:intron 20.0%
!! AATGTAGAAATGATAACAAT+GGG + chr1.2:16376689-16376708 MS.gene83120:intron 20.0%
!! ATAGTATAATTTCAGTAAAC+TGG - chr1.2:16374774-16374793 None:intergenic 20.0%
!! GTTATCGAAACAAATTATTA+TGG + chr1.2:16375913-16375932 MS.gene83120:CDS 20.0%
!! TAACTATTATCTTTAATGGT+AGG + chr1.2:16375828-16375847 MS.gene83120:intron 20.0%
!! TAGTATAATTTCAGTAAACT+GGG - chr1.2:16374773-16374792 None:intergenic 20.0%
!! TTTATGTGTGAAAAATTGTT+CGG - chr1.2:16376170-16376189 None:intergenic 20.0%
!! TTTCCAAAATCAATTGTTTA+TGG + chr1.2:16374793-16374812 MS.gene83120:intron 20.0%
!!! AATTTTAAGTGATACAGTAA+TGG - chr1.2:16376396-16376415 None:intergenic 20.0%
!!! ATTCCATAAACAATTGATTT+TGG - chr1.2:16374799-16374818 None:intergenic 20.0%
!!! ATTTCACTTTTAAGTGTTTT+TGG + chr1.2:16374643-16374662 MS.gene83120:intron 20.0%
!!! ATTTTAAGTGATACAGTAAT+GGG - chr1.2:16376395-16376414 None:intergenic 20.0%
!!! TCAAATATATACTGATTACT+CGG + chr1.2:16376858-16376877 MS.gene83120:CDS 20.0%
!!! TCTTTCCTAATAATTTTTCT+AGG - chr1.2:16375586-16375605 None:intergenic 20.0%
!!! TTATCCATTTTGATTACTTT+TGG + chr1.2:16375198-16375217 MS.gene83120:intron 20.0%
! AAGTTATATAGCACAAAACA+AGG - chr1.2:16376663-16376682 None:intergenic 25.0%
! AGATTTGTAAATTAACGAGT+TGG + chr1.2:16375603-16375622 MS.gene83120:intron 25.0%
! AGTATAATTTCAGTAAACTG+GGG - chr1.2:16374772-16374791 None:intergenic 25.0%
! AGTCTGAATTACATATATTG+TGG + chr1.2:16376469-16376488 MS.gene83120:intron 25.0%
! ATCAAAATGGATAAAACTCT+TGG - chr1.2:16375192-16375211 None:intergenic 25.0%
! CAATCCAAAAGTAATCAAAA+TGG - chr1.2:16375205-16375224 None:intergenic 25.0%
! GAAAAAATTAGAAAAAGCTC+CGG - chr1.2:16374838-16374857 None:intergenic 25.0%
! GAAGACCTAGAAAAATTATT+AGG + chr1.2:16375578-16375597 MS.gene83120:intron 25.0%
! GAGTAATCAGTATATATTTG+AGG - chr1.2:16376859-16376878 None:intergenic 25.0%
! TCTTTCACATTTGATCTAAA+TGG + chr1.2:16375285-16375304 MS.gene83120:intron 25.0%
! TGAGAATAAAATAAGCATAG+TGG + chr1.2:16375347-16375366 MS.gene83120:intron 25.0%
! TGGTGTATGATAGAATATTA+TGG + chr1.2:16375635-16375654 MS.gene83120:intron 25.0%
!! TTTTTACAAGAAGTAGAAGA+TGG + chr1.2:16376811-16376830 MS.gene83120:CDS 25.0%
!!! AGATGCATTTTTTTACTTTG+AGG - chr1.2:16376123-16376142 None:intergenic 25.0%
!!! TGCTTATTTTATTCTCATGT+TGG - chr1.2:16375344-16375363 None:intergenic 25.0%
AAAAACTTCCCATAACTGTT+TGG - chr1.2:16377074-16377093 None:intergenic 30.0%
AAGTCTGAGCAAAAATATGA+AGG - chr1.2:16376090-16376109 None:intergenic 30.0%
AATAAGGAATAGACCTTAGA+AGG - chr1.2:16374593-16374612 None:intergenic 30.0%
ACTTTGTCCCATATGAAATA+GGG + chr1.2:16376294-16376313 MS.gene83120:intron 30.0%
AGCAGTTAACAAAAATCTTC+TGG - chr1.2:16376951-16376970 None:intergenic 30.0%
AGTAATGGTAAAACACGTTT+AGG - chr1.2:16376277-16376296 None:intergenic 30.0%
ATATGCATTAACAGCAAGTT+TGG - chr1.2:16376887-16376906 None:intergenic 30.0%
ATGACTATATTAGAGAGAGT+TGG + chr1.2:16375424-16375443 MS.gene83120:intron 30.0%
CTCATTACTACAGAATCTAT+AGG - chr1.2:16375517-16375536 None:intergenic 30.0%
GCAAAATAGATTGATACCTT+TGG - chr1.2:16374623-16374642 None:intergenic 30.0%
TAATGCATATACAAGGCTTA+TGG + chr1.2:16376897-16376916 MS.gene83120:CDS 30.0%
TACTTTGTCCCATATGAAAT+AGG + chr1.2:16376293-16376312 MS.gene83120:intron 30.0%
TCACTATAACATCTACTTTG+TGG + chr1.2:16376607-16376626 MS.gene83120:intron 30.0%
TGACTATATTAGAGAGAGTT+GGG + chr1.2:16375425-16375444 MS.gene83120:intron 30.0%
TGATCTTAACATTGTGAACA+TGG + chr1.2:16375721-16375740 MS.gene83120:intron 30.0%
TGTTAATTTCAATCTTGGGT+CGG + chr1.2:16375864-16375883 MS.gene83120:CDS 30.0%
TTATGGTGGTTTAGATATTC+TGG + chr1.2:16375116-16375135 MS.gene83120:CDS 30.0%
TTGAAGAGATTAACCTTCTA+AGG + chr1.2:16374577-16374596 MS.gene83120:CDS 30.0%
TTTCATATGGGACAAAGTAA+TGG - chr1.2:16376292-16376311 None:intergenic 30.0%
! ACTATGAAGTATGTTGATTG+TGG + chr1.2:16375777-16375796 MS.gene83120:intron 30.0%
! CATCTCACTGTCATATTTTT+GGG + chr1.2:16376138-16376157 MS.gene83120:intron 30.0%
! CTGGTGTTAATTTCAATCTT+GGG + chr1.2:16375860-16375879 MS.gene83120:CDS 30.0%
! TCAATTAGGGTTTTACAAGA+AGG + chr1.2:16375012-16375031 MS.gene83120:CDS 30.0%
! TTGCTGTTAATGCATATACA+AGG + chr1.2:16376890-16376909 MS.gene83120:CDS 30.0%
!! CAATTTTGAGTATATGTAGG+TGG + chr1.2:16374860-16374879 MS.gene83120:intron 30.0%
!! CGTCAATTTTGAGTATATGT+AGG + chr1.2:16374857-16374876 MS.gene83120:intron 30.0%
AAGGAATTGCAGCATTTGAA+AGG - chr1.2:16376553-16376572 None:intergenic 35.0%
AATTTCAAACCACTCTTGTC+CGG + chr1.2:16374816-16374835 MS.gene83120:intron 35.0%
ACAACAGATGGTTTCATCAT+TGG - chr1.2:16375967-16375986 None:intergenic 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr1.2:16375453-16375472 MS.gene83120:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr1.2:16375450-16375469 MS.gene83120:intron 35.0%
AGTAATGAGAGTAGATCAGA+TGG + chr1.2:16375528-16375547 MS.gene83120:intron 35.0%
ATGATGAAACCATCTGTTGT+TGG + chr1.2:16375967-16375986 MS.gene83120:CDS 35.0%
CTTTGTCCCATATGAAATAG+GGG + chr1.2:16376295-16376314 MS.gene83120:intron 35.0%
GAAAACATACTTAGGTGGTT+TGG + chr1.2:16375475-16375494 MS.gene83120:intron 35.0%
GACTATATTAGAGAGAGTTG+GGG + chr1.2:16375426-16375445 MS.gene83120:intron 35.0%
TAATGGTAGGTAAACAATGC+TGG + chr1.2:16375841-16375860 MS.gene83120:intron 35.0%
TAATGTCGAGTTTCTTTCAG+AGG + chr1.2:16376762-16376781 MS.gene83120:CDS 35.0%
TACAGACCCCTATTTCATAT+GGG - chr1.2:16376304-16376323 None:intergenic 35.0%
TAGCTACTTCCTCTTATAGA+GGG + chr1.2:16376341-16376360 MS.gene83120:intron 35.0%
TTAGCTACTTCCTCTTATAG+AGG + chr1.2:16376340-16376359 MS.gene83120:intron 35.0%
TTCTATCATACACCATGTGT+CGG - chr1.2:16375630-16375649 None:intergenic 35.0%
! AAATAAGCATAGTGGAGATG+AGG + chr1.2:16375355-16375374 MS.gene83120:intron 35.0%
! AGATTGATACCTTTGGTGAT+CGG - chr1.2:16374616-16374635 None:intergenic 35.0%
! AGTGATACAGTAATGGGATA+AGG - chr1.2:16376389-16376408 None:intergenic 35.0%
! ATAAGTTAGTTGATGCAGTG+AGG + chr1.2:16376426-16376445 MS.gene83120:intron 35.0%
! ATTAGGGTTTTACAAGAAGG+TGG + chr1.2:16375015-16375034 MS.gene83120:CDS 35.0%
! GCATCTCACTGTCATATTTT+TGG + chr1.2:16376137-16376156 MS.gene83120:intron 35.0%
! GCTGGTGTTAATTTCAATCT+TGG + chr1.2:16375859-16375878 MS.gene83120:CDS 35.0%
! GGAAACAATACTGTTGATGA+AGG + chr1.2:16377012-16377031 MS.gene83120:CDS 35.0%
! GTGATACAGTAATGGGATAA+GGG - chr1.2:16376388-16376407 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr1.2:16375457-16375476 None:intergenic 35.0%
! TTTTGTTAACTGCTATTGCC+CGG + chr1.2:16376957-16376976 MS.gene83120:CDS 35.0%
!! AGATGGTGGAAAACATACTT+AGG + chr1.2:16375467-16375486 MS.gene83120:intron 35.0%
!! TTTTGAGTATATGTAGGTGG+TGG + chr1.2:16374863-16374882 MS.gene83120:intron 35.0%
!!! AAGTTTTTTTGCTGAGAGAC+GGG + chr1.2:16377086-16377105 MS.gene83120:CDS 35.0%
!!! GAAGTTTTTTTGCTGAGAGA+CGG + chr1.2:16377085-16377104 MS.gene83120:CDS 35.0%
AACTGTTTGGTCATGCAGAA+GGG - chr1.2:16377061-16377080 None:intergenic 40.0%
AAGAAGTAGAAGATGGAAGC+TGG + chr1.2:16376818-16376837 MS.gene83120:CDS 40.0%
AATGAGAGTAGATCAGATGG+AGG + chr1.2:16375531-16375550 MS.gene83120:intron 40.0%
AGCTACTTCCTCTTATAGAG+GGG + chr1.2:16376342-16376361 MS.gene83120:intron 40.0%
ATCTAAATGGAACAGAGTGC+TGG + chr1.2:16375298-16375317 MS.gene83120:intron 40.0%
CAGTGGTTGCAGGAAAATTA+TGG + chr1.2:16375099-16375118 MS.gene83120:CDS 40.0%
CATATACAAGGCTTATGGTG+AGG + chr1.2:16376902-16376921 MS.gene83120:CDS 40.0%
CTACAGACCCCTATTTCATA+TGG - chr1.2:16376305-16376324 None:intergenic 40.0%
CTGCATGACCAAACAGTTAT+GGG + chr1.2:16377063-16377082 MS.gene83120:CDS 40.0%
GAAACTATTGCTGTGGTTAC+CGG + chr1.2:16374892-16374911 MS.gene83120:CDS 40.0%
GATTACAACAGCACAGACTA+TGG - chr1.2:16375166-16375185 None:intergenic 40.0%
GTCTAAGGAAACTATTGCTG+TGG + chr1.2:16374885-16374904 MS.gene83120:CDS 40.0%
GTGAACATGGAATTAAGCAC+AGG + chr1.2:16375734-16375753 MS.gene83120:intron 40.0%
TAAAGTAGCGGTCACTCTAA+TGG + chr1.2:16376244-16376263 MS.gene83120:intron 40.0%
TAACTGTTTGGTCATGCAGA+AGG - chr1.2:16377062-16377081 None:intergenic 40.0%
TACATTTGCCCCTCTATAAG+AGG - chr1.2:16376353-16376372 None:intergenic 40.0%
TAGGCCGATAGTTAAAGTAG+CGG + chr1.2:16376232-16376251 MS.gene83120:intron 40.0%
TCTGCATGACCAAACAGTTA+TGG + chr1.2:16377062-16377081 MS.gene83120:CDS 40.0%
TGGTGGAAAACATACTTAGG+TGG + chr1.2:16375470-16375489 MS.gene83120:intron 40.0%
TGGTTGCAGGAAAATTATGG+TGG + chr1.2:16375102-16375121 MS.gene83120:CDS 40.0%
TTCCTTATTCCGATCACCAA+AGG + chr1.2:16374604-16374623 MS.gene83120:CDS 40.0%
TTTCAGAGGAACTGATTGAC+AGG + chr1.2:16376776-16376795 MS.gene83120:CDS 40.0%
TTTGTTAACTGCTATTGCCC+GGG + chr1.2:16376958-16376977 MS.gene83120:CDS 40.0%
! AACCCTAATTGATTCAGCAC+CGG - chr1.2:16375004-16375023 None:intergenic 40.0%
! AATCACCAATGTAGCCTTGA+GGG + chr1.2:16376729-16376748 MS.gene83120:CDS 40.0%
! ACAAAAATCTTCTGGCCTTC+TGG - chr1.2:16376943-16376962 None:intergenic 40.0%
! ATACAGTAATGGGATAAGGG+CGG - chr1.2:16376385-16376404 None:intergenic 40.0%
! GGTTTTACAAGAAGGTGGTT+TGG + chr1.2:16375020-16375039 MS.gene83120:CDS 40.0%
! GTGACCGCTACTTTAACTAT+CGG - chr1.2:16376239-16376258 None:intergenic 40.0%
! TACCTTTGGTGATCGGAATA+AGG - chr1.2:16374609-16374628 None:intergenic 40.0%
! TATATGTAGGTGGTGGTCTA+AGG + chr1.2:16374870-16374889 MS.gene83120:intron 40.0%
!! CATCTCTAGAGTATGCTAGA+AGG - chr1.2:16376572-16376591 None:intergenic 40.0%
!! TGTAGACAACTTGCTACTCA+TGG + chr1.2:16374943-16374962 MS.gene83120:CDS 40.0%
AAGGAGCTGATACTGGAGTA+TGG + chr1.2:16377031-16377050 MS.gene83120:CDS 45.0%
ACATCAAGAGATGCTAGTGC+CGG + chr1.2:16374982-16375001 MS.gene83120:CDS 45.0%
ATTACTCAGTTGCTCCCTCA+AGG - chr1.2:16376746-16376765 None:intergenic 45.0%
ATTCGAGCACCAACAACAGA+TGG - chr1.2:16375979-16375998 None:intergenic 45.0%
CCACTGAACAAAGTGGTTGA+TGG - chr1.2:16375085-16375104 None:intergenic 45.0%
CCATCAACCACTTTGTTCAG+TGG + chr1.2:16375082-16375101 MS.gene83120:CDS 45.0%
CTCTGTTGAAAATGCTCGCA+AGG + chr1.2:16375891-16375910 MS.gene83120:CDS 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr1.2:16375550-16375569 MS.gene83120:intron 45.0%
GTAAACGTAAGCTCACGTCT+AGG + chr1.2:16376000-16376019 MS.gene83120:CDS 45.0%
GTGGTGAGACTAGATGAGAT+AGG + chr1.2:16375394-16375413 MS.gene83120:intron 45.0%
TCACGTCTAGGTCGACTAAA+TGG + chr1.2:16376012-16376031 MS.gene83120:CDS 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - chr1.2:16375684-16375703 None:intergenic 45.0%
! ACAAGAAGGTGGTTTGGATG+TGG + chr1.2:16375026-16375045 MS.gene83120:CDS 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - chr1.2:16375685-16375704 None:intergenic 45.0%
! GAATCACCAATGTAGCCTTG+AGG + chr1.2:16376728-16376747 MS.gene83120:CDS 45.0%
! GTTGATGAAGGAGCTGATAC+TGG + chr1.2:16377024-16377043 MS.gene83120:CDS 45.0%
! TACAGTAATGGGATAAGGGC+GGG - chr1.2:16376384-16376403 None:intergenic 45.0%
! TGCCGGTGCTGAATCAATTA+GGG + chr1.2:16374999-16375018 MS.gene83120:CDS 45.0%
!! ACGGCTTTAACAGGTTTTGC+AGG + chr1.2:16376991-16377010 MS.gene83120:CDS 45.0%
AAGCTTTCTGAGCGACCAGA+AGG + chr1.2:16376925-16376944 MS.gene83120:CDS 50.0%
ACCGGTGGAAACAGAGGAAT+TGG + chr1.2:16374910-16374929 MS.gene83120:CDS 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - chr1.2:16375672-16375691 None:intergenic 50.0%
ACTATTGCTGTGGTTACCGG+TGG + chr1.2:16374895-16374914 MS.gene83120:CDS 50.0%
AGGATGTTGCGTTGGATGTG+TGG + chr1.2:16375375-16375394 MS.gene83120:intron 50.0%
AGTCAGATCACTAGAGGCAG+AGG + chr1.2:16375556-16375575 MS.gene83120:intron 50.0%
ATGGAAGCTGGACATCAGGT+GGG + chr1.2:16376830-16376849 MS.gene83120:CDS 50.0%
ATGTAGCTGACCCCACTTAG+TGG + chr1.2:16375671-16375690 MS.gene83120:intron 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr1.2:16375683-16375702 MS.gene83120:intron 50.0%
CCACTTTGTTCAGTGGTTGC+AGG + chr1.2:16375089-16375108 MS.gene83120:CDS 50.0%
CCCAATTCCTCTGTTTCCAC+CGG - chr1.2:16374914-16374933 None:intergenic 50.0%
CCGGTGGAAACAGAGGAATT+GGG + chr1.2:16374911-16374930 MS.gene83120:CDS 50.0%
CCTGCAACCACTGAACAAAG+TGG - chr1.2:16375092-16375111 None:intergenic 50.0%
GAAAAAGCTCCGGACAAGAG+TGG - chr1.2:16374828-16374847 None:intergenic 50.0%
GAAGATGGAAGCTGGACATC+AGG + chr1.2:16376826-16376845 MS.gene83120:CDS 50.0%
TAACTGCTATTGCCCGGGTT+GGG + chr1.2:16376963-16376982 MS.gene83120:CDS 50.0%
TAAGGCGGAGAAGAAGGTGA+AGG + chr1.2:16374530-16374549 MS.gene83120:CDS 50.0%
TGACCCCACTTAGTGGGAAA+AGG + chr1.2:16375678-16375697 MS.gene83120:intron 50.0%
TGGAGATGAGGATGTTGCGT+TGG + chr1.2:16375367-16375386 MS.gene83120:intron 50.0%
TGTAGCTGACCCCACTTAGT+GGG + chr1.2:16375672-16375691 MS.gene83120:intron 50.0%
TTAACTGCTATTGCCCGGGT+TGG + chr1.2:16376962-16376981 MS.gene83120:CDS 50.0%
TTGCTCCCTCAAGGCTACAT+TGG - chr1.2:16376737-16376756 None:intergenic 50.0%
! ACAGTAATGGGATAAGGGCG+GGG - chr1.2:16376383-16376402 None:intergenic 50.0%
! AGTTGATGCAGTGAGGCAGA+TGG + chr1.2:16376433-16376452 MS.gene83120:intron 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr1.2:16375686-16375705 None:intergenic 50.0%
! GTGCCGGTGCTGAATCAATT+AGG + chr1.2:16374998-16375017 MS.gene83120:CDS 50.0%
! TAACGAGTTGGACCGACACA+TGG + chr1.2:16375615-16375634 MS.gene83120:intron 50.0%
! TGGGTGAAGACGGCTTTAAC+AGG + chr1.2:16376982-16377001 MS.gene83120:CDS 50.0%
AAAGCCGTCTTCACCCAACC+CGG - chr1.2:16376979-16376998 None:intergenic 55.0%
GATGGAAGCTGGACATCAGG+TGG + chr1.2:16376829-16376848 MS.gene83120:CDS 55.0%
GTGGTTACCGGTGGAAACAG+AGG + chr1.2:16374904-16374923 MS.gene83120:CDS 55.0%
! TGGTTTTTCACCGTGCCAGC+AGG - chr1.2:16375324-16375343 None:intergenic 55.0%
AAGCCGTCTTCACCCAACCC+GGG - chr1.2:16376978-16376997 None:intergenic 60.0%
AATGGGATAAGGGCGGGGTC+AGG - chr1.2:16376378-16376397 None:intergenic 60.0%
GAAGCTGGACATCAGGTGGG+TGG + chr1.2:16376833-16376852 MS.gene83120:CDS 60.0%
! TTGCCCGGGTTGGGTGAAGA+CGG + chr1.2:16376972-16376991 MS.gene83120:CDS 60.0%
!! AGAGTGCTGGCCTGCTGGCA+CGG + chr1.2:16375311-16375330 MS.gene83120:intron 65.0%
!! GGAACAGAGTGCTGGCCTGC+TGG + chr1.2:16375306-16375325 MS.gene83120:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 16374525 16377122 16374525 ID=MS.gene83120
chr1.2 mRNA 16374525 16377122 16374525 ID=MS.gene83120.t1;Parent=MS.gene83120
chr1.2 exon 16374525 16374625 16374525 ID=MS.gene83120.t1.exon1;Parent=MS.gene83120.t1
chr1.2 CDS 16374525 16374625 16374525 ID=cds.MS.gene83120.t1;Parent=MS.gene83120.t1
chr1.2 exon 16374879 16375137 16374879 ID=MS.gene83120.t1.exon2;Parent=MS.gene83120.t1
chr1.2 CDS 16374879 16375137 16374879 ID=cds.MS.gene83120.t1;Parent=MS.gene83120.t1
chr1.2 exon 16375850 16376044 16375850 ID=MS.gene83120.t1.exon3;Parent=MS.gene83120.t1
chr1.2 CDS 16375850 16376044 16375850 ID=cds.MS.gene83120.t1;Parent=MS.gene83120.t1
chr1.2 exon 16376727 16377122 16376727 ID=MS.gene83120.t1.exon4;Parent=MS.gene83120.t1
chr1.2 CDS 16376727 16377122 16376727 ID=cds.MS.gene83120.t1;Parent=MS.gene83120.t1
Gene Sequence

>MS.gene83120

ATGGGTAAGGCGGAGAAGAAGGTGAAGGCAAAAGAACGAAGAGAAAAGAGACTTGAAGAGATTAACCTTCTAAGGTCTATTCCTTATTCCGATCACCAAAGGTATCAATCTATTTTGCATTTCACTTTTAAGTGTTTTTGGAAATAAGCTAAACACAACTTAAGAATAGTATATCATAAATTGCTTATGTAAGCTCTTACAAACAGTTTCATAAGTGCTTATGCAAGTTCATAAGATTACAATGCCCCAGTTTACTGAAATTATACTATTTCCAAAATCAATTGTTTATGGAATTTCAAACCACTCTTGTCCGGAGCTTTTTCTAATTTTTTCGTCAATTTTGAGTATATGTAGGTGGTGGTCTAAGGAAACTATTGCTGTGGTTACCGGTGGAAACAGAGGAATTGGGTTTGAGATTTGTAGACAACTTGCTACTCATGGATTGACTGTTATACTAACATCAAGAGATGCTAGTGCCGGTGCTGAATCAATTAGGGTTTTACAAGAAGGTGGTTTGGATGTGGTTTATCATCGACTTGACATTGTCGACGATTCATCCATCAACCACTTTGTTCAGTGGTTGCAGGAAAATTATGGTGGTTTAGATATTCTGGTCAGTTTCTAAAATTTGCTTTCTTCCATAGTCTGTGCTGTTGTAATCTATCCAAGAGTTTTATCCATTTTGATTACTTTTGGATTGTCAACTTCTATTATCTATAATATTCACAAAATCAAGTTGCTTTAGATATATTTATTTATTTCTTTCACATTTGATCTAAATGGAACAGAGTGCTGGCCTGCTGGCACGGTGAAAAACCAACATGAGAATAAAATAAGCATAGTGGAGATGAGGATGTTGCGTTGGATGTGTGGTGAGACTAGATGAGATAGGATTAGAAATGACTATATTAGAGAGAGTTGGGGTAGCACCTATAGTAGAAAAGATGGTGGAAAACATACTTAGGTGGTTTGGACATGTAGAGAGAAGACCTATAGATTCTGTAGTAATGAGAGTAGATCAGATGGAGGATAGTCAGATCACTAGAGGCAGAGGAAGACCTAGAAAAATTATTAGGAAAGATTTGTAAATTAACGAGTTGGACCGACACATGGTGTATGATAGAATATTATGGCGTAATTTGATCCATGTAGCTGACCCCACTTAGTGGGAAAAGGCTTGGTTGTTATTGTATGTTTGATCTTAACATTGTGAACATGGAATTAAGCACAGGAGATAATTAATTGAATTTTTACTATGAAGTATGTTGATTGTGGTTTAACACATTTCTTTGTTTTATGTTTCTAACTATTATCTTTAATGGTAGGTAAACAATGCTGGTGTTAATTTCAATCTTGGGTCGGATAACTCTGTTGAAAATGCTCGCAAGGTTATCGAAACAAATTATTATGGCATCAAAAAGTTGACTGAAGCTCTTATTCCAATGATGAAACCATCTGTTGTTGGTGCTCGAATTGTAAACGTAAGCTCACGTCTAGGTCGACTAAATGGAAGACGAAATGTAAGTTAAAATCATTTATGAAAAAGTTGTAATCTCAACATTCCTTCATATTTTTGCTCAGACTTCATCTAGCATCCTCAAAGTAAAAAAATGCATCTCACTGTCATATTTTTGGGTCTAAACCGAACAATTTTTCACACATAAATGTTCTTTTGAAATATAAAACTTTGCAATTTTTTTTTTTTAGTAGGCCGATAGTTAAAGTAGCGGTCACTCTAATGGTATATCGCCTAAACGTGTTTTACCATTACTTTGTCCCATATGAAATAGGGGTCTGTAGCTGATGTTTATCAGTTTAGCTACTTCCTCTTATAGAGGGGCAAATGTACTCCTGACCCCGCCCTTATCCCATTACTGTATCACTTAAAATTACTTTCTGACATAAGTTAGTTGATGCAGTGAGGCAGATGGTTACATAAACTATAGTCTGAATTACATATATTGTGGTGAAATTCCAACGTTAATAATTTTTTTTACTTACATAAATATAGATAAAATGAAAAATCCTTTCAAATGCTGCAATTCCTTCTAGCATACTCTAGAGATGTATTTCTTAGACAGTTCACTATAACATCTACTTTGTGGTAAATGTTTTCATTAGTAGCTTTGATTGCGCCTTGTTTTGTGCTATATAACTTCTGCAAAATGTAGAAATGATAACAATGGGTTGCTTGATTGACAGAGAATCACCAATGTAGCCTTGAGGGAGCAACTGAGTAATGTCGAGTTTCTTTCAGAGGAACTGATTGACAGGACTCTATCTACATTTTTACAAGAAGTAGAAGATGGAAGCTGGACATCAGGTGGGTGGCCTCAAATATATACTGATTACTCGGTATCCAAACTTGCTGTTAATGCATATACAAGGCTTATGGTGAGGAAGCTTTCTGAGCGACCAGAAGGCCAGAAGATTTTTGTTAACTGCTATTGCCCGGGTTGGGTGAAGACGGCTTTAACAGGTTTTGCAGGAAACAATACTGTTGATGAAGGAGCTGATACTGGAGTATGGCTAGCCCTTCTGCATGACCAAACAGTTATGGGAAGTTTTTTTGCTGAGAGACGGGAAATTAACTTTTAA

Protein sequence

>MS.gene83120.t1

MGKAEKKVKAKERREKRLEEINLLRSIPYSDHQRWWSKETIAVVTGGNRGIGFEICRQLATHGLTVILTSRDASAGAESIRVLQEGGLDVVYHRLDIVDDSSINHFVQWLQENYGGLDILVNNAGVNFNLGSDNSVENARKVIETNYYGIKKLTEALIPMMKPSVVGARIVNVSSRLGRLNGRRNRITNVALREQLSNVEFLSEELIDRTLSTFLQEVEDGSWTSGGWPQIYTDYSVSKLAVNAYTRLMVRKLSERPEGQKIFVNCYCPGWVKTALTGFAGNNTVDEGADTGVWLALLHDQTVMGSFFAERREINF