AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83604


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83604.t1 MTR_2g105060 95.016 321 7 5 1 317 1 316 0.0 611
MS.gene83604.t1 MTR_2g105060 96.341 246 2 3 74 317 1 241 4.96e-174 481
MS.gene83604.t1 MTR_4g007060 59.816 326 106 8 5 317 4 317 3.73e-107 315
MS.gene83604.t1 MTR_4g007060 58.188 287 100 6 44 317 4 283 8.41e-90 270
MS.gene83604.t1 MTR_1g013760 46.643 283 127 7 41 314 9 276 5.70e-71 222
MS.gene83604.t1 MTR_3g106060 46.545 275 114 7 56 314 29 286 3.34e-70 220
MS.gene83604.t1 MTR_4g007060 60.360 222 79 5 1 222 1 213 4.00e-68 213
MS.gene83604.t1 MTR_1g013790 35.897 273 129 8 51 316 6 239 1.07e-39 140
MS.gene83604.t1 MTR_7g110720 27.848 316 149 9 57 310 100 398 1.95e-29 117
MS.gene83604.t1 MTR_7g110720 28.525 305 134 10 57 310 100 371 2.83e-28 113
MS.gene83604.t1 MTR_4g132430 30.357 224 113 5 49 236 110 326 1.32e-27 112
MS.gene83604.t1 MTR_2g023930 32.911 237 95 8 49 231 139 365 5.14e-26 108
MS.gene83604.t1 MTR_2g045360 31.579 266 123 8 55 275 70 321 4.53e-24 102
MS.gene83604.t1 MTR_3g053330 30.870 230 110 6 47 231 86 311 4.59e-24 102
MS.gene83604.t1 MTR_4g094412 53.086 81 33 2 151 231 228 303 1.57e-23 100
MS.gene83604.t1 MTR_4g094412 53.086 81 33 2 151 231 219 294 1.62e-23 100
MS.gene83604.t1 MTR_4g107970 51.250 80 37 1 152 231 161 238 1.22e-22 98.6
MS.gene83604.t1 MTR_7g009730 47.619 84 42 1 146 229 196 277 1.56e-22 98.2
MS.gene83604.t1 MTR_4g107970 51.250 80 37 1 152 231 238 315 1.88e-22 98.2
MS.gene83604.t1 MTR_7g109800 50.617 81 37 2 151 231 127 204 3.84e-22 94.7
MS.gene83604.t1 MTR_1g086790 54.545 77 32 2 156 232 145 218 4.33e-22 95.1
MS.gene83604.t1 MTR_3g104750 40.000 120 60 4 112 229 52 161 4.62e-22 91.3
MS.gene83604.t1 MTR_4g132430 47.191 89 42 2 148 236 109 192 9.70e-22 94.4
MS.gene83604.t1 MTR_2g033820 53.086 81 35 2 156 236 190 267 1.17e-21 94.4
MS.gene83604.t1 MTR_4g094588 51.948 77 34 2 156 232 165 238 2.26e-21 93.2
MS.gene83604.t1 MTR_4g049760 50.000 78 37 1 155 232 276 351 3.62e-21 94.4
MS.gene83604.t1 MTR_7g079010 52.564 78 34 2 152 229 124 198 7.73e-21 89.4
MS.gene83604.t1 MTR_2g088000 31.174 247 88 9 57 231 173 409 2.17e-20 92.0
MS.gene83604.t1 MTR_4g007060 50.794 126 59 2 44 169 4 126 3.98e-20 86.3
MS.gene83604.t1 MTR_5g094430 57.812 64 26 1 169 232 228 290 5.12e-20 90.1
MS.gene83604.t1 MTR_5g094430 46.269 67 31 3 172 238 67 128 1.52e-11 65.1
MS.gene83604.t1 MTR_5g094430 57.812 64 26 1 169 232 250 312 5.58e-20 90.1
MS.gene83604.t1 MTR_5g094430 46.269 67 31 3 172 238 89 150 1.42e-11 65.1
MS.gene83604.t1 MTR_5g094430 57.812 64 26 1 169 232 362 424 6.08e-20 90.5
MS.gene83604.t1 MTR_5g094430 46.269 67 31 3 172 238 201 262 1.58e-11 65.5
MS.gene83604.t1 MTR_4g049790 50.000 78 37 1 155 232 298 373 6.57e-20 90.5
MS.gene83604.t1 MTR_4g013260 40.909 110 49 2 122 231 302 395 7.59e-20 90.1
MS.gene83604.t1 MTR_4g013260 49.231 65 32 1 171 235 184 247 4.79e-16 79.0
MS.gene83604.t1 MTR_7g100510 52.857 70 32 1 162 231 352 420 9.68e-20 89.7
MS.gene83604.t1 MTR_7g100510 53.333 60 26 2 172 231 190 247 1.25e-14 74.3
MS.gene83604.t1 MTR_3g056100 57.812 64 26 1 169 232 256 318 1.04e-19 89.4
MS.gene83604.t1 MTR_3g056100 48.333 60 29 2 172 231 100 157 1.85e-11 65.1
MS.gene83604.t1 MTR_3g056100 57.812 64 26 1 169 232 269 331 1.11e-19 89.4
MS.gene83604.t1 MTR_3g056100 48.333 60 29 2 172 231 100 157 1.92e-11 65.1
MS.gene83604.t1 MTR_5g042920 54.688 64 28 1 169 232 318 380 1.16e-19 89.4
MS.gene83604.t1 MTR_5g042920 45.455 77 32 4 172 246 152 220 8.31e-13 68.9
MS.gene83604.t1 MTR_3g056100 57.812 64 26 1 169 232 413 475 1.21e-19 89.7
MS.gene83604.t1 MTR_3g056100 48.333 60 29 2 172 231 244 301 1.99e-11 65.1
MS.gene83604.t1 MTR_3g056100 57.812 64 26 1 169 232 400 462 1.25e-19 89.7
MS.gene83604.t1 MTR_3g056100 48.333 60 29 2 172 231 244 301 2.06e-11 65.1
MS.gene83604.t1 MTR_4g082580 42.056 107 46 3 137 243 259 349 1.37e-19 88.6
MS.gene83604.t1 MTR_4g082580 48.529 68 34 1 172 239 146 212 4.68e-13 69.7
MS.gene83604.t1 MTR_5g091390 50.649 77 35 2 156 232 144 217 1.49e-19 87.8
MS.gene83604.t1 MTR_7g080000 42.478 113 61 3 121 232 383 492 4.00e-19 88.2
MS.gene83604.t1 MTR_1g015140 50.667 75 34 2 156 230 89 160 4.89e-19 82.8
MS.gene83604.t1 MTR_3g009470 41.667 96 40 2 137 232 476 555 7.13e-19 87.8
MS.gene83604.t1 MTR_3g009470 34.783 115 47 4 171 285 280 366 2.65e-12 67.8
MS.gene83604.t1 MTR_7g011820 56.667 60 25 1 169 228 408 466 8.13e-19 87.0
MS.gene83604.t1 MTR_7g011820 43.373 83 43 3 172 252 229 309 2.18e-11 64.7
MS.gene83604.t1 MTR_5g074400 40.741 108 48 3 125 232 389 480 9.36e-19 87.0
MS.gene83604.t1 MTR_5g074400 50.794 63 29 2 172 234 244 304 5.40e-14 72.8
MS.gene83604.t1 MTR_5g016610 40.385 104 55 2 125 228 160 256 1.07e-18 84.7
MS.gene83604.t1 MTR_7g071120 38.318 107 50 2 126 232 294 384 1.15e-18 86.7
MS.gene83604.t1 MTR_7g071120 45.714 70 36 2 171 240 166 233 3.15e-14 73.6
MS.gene83604.t1 MTR_5g043880 50.685 73 33 2 156 228 111 180 1.39e-18 84.3
MS.gene83604.t1 MTR_8g092140 49.315 73 35 2 156 228 146 216 1.41e-18 83.6
MS.gene83604.t1 MTR_7g028415 38.095 126 64 3 115 229 28 150 1.97e-18 81.6
MS.gene83604.t1 MTR_7g028710 38.095 126 64 3 115 229 28 150 1.97e-18 81.6
MS.gene83604.t1 MTR_7g080020 44.545 110 54 4 126 232 448 553 2.01e-18 86.3
MS.gene83604.t1 MTR_7g080020 49.231 65 29 3 171 233 280 342 1.42e-11 65.9
MS.gene83604.t1 MTR_8g096730 44.872 78 42 1 169 246 68 144 3.42e-18 80.1
MS.gene83604.t1 MTR_4g122530 49.351 77 36 2 155 231 194 267 5.58e-18 84.3
MS.gene83604.t1 MTR_1g077780 50.000 64 31 1 169 232 60 122 5.65e-18 79.7
MS.gene83604.t1 MTR_1g009613 44.048 84 43 1 149 228 236 319 5.69e-18 83.6
MS.gene83604.t1 MTR_3g031220 39.091 110 51 3 123 232 332 425 6.79e-18 84.3
MS.gene83604.t1 MTR_3g031220 50.000 60 28 2 172 231 199 256 6.29e-14 72.4
MS.gene83604.t1 MTR_4g094908 56.140 57 25 0 172 228 267 323 1.28e-17 82.4
MS.gene83604.t1 MTR_3g095040 30.570 193 110 6 88 273 30 205 1.47e-17 80.1
MS.gene83604.t1 MTR_5g097490 50.000 78 36 2 155 232 238 312 1.52e-17 82.8
MS.gene83604.t1 MTR_3g095080 47.945 73 35 2 156 228 131 200 2.69e-17 79.7
MS.gene83604.t1 MTR_3g095080 47.945 73 35 2 156 228 155 224 2.99e-17 80.1
MS.gene83604.t1 MTR_8g092010 47.368 76 37 2 156 231 95 167 8.39e-17 77.4
MS.gene83604.t1 MTR_2g032030 43.038 79 45 0 168 246 264 342 1.03e-16 80.9
MS.gene83604.t1 MTR_2g032030 42.857 77 44 0 168 244 264 340 1.08e-16 80.5
MS.gene83604.t1 MTR_8g007270 39.130 115 60 4 115 228 105 210 1.12e-16 78.2
MS.gene83604.t1 MTR_1g070455 51.667 60 29 0 169 228 291 350 1.55e-16 79.7
MS.gene83604.t1 MTR_7g109600 35.238 105 65 1 135 239 20 121 1.86e-16 78.2
MS.gene83604.t1 MTR_7g062220 45.333 75 30 2 172 236 125 198 6.07e-16 77.4
MS.gene83604.t1 MTR_4g127040 45.570 79 42 1 151 228 224 302 6.68e-16 77.4
MS.gene83604.t1 MTR_8g098945 46.774 62 33 0 172 233 130 191 1.45e-15 75.9
MS.gene83604.t1 MTR_8g028565 37.895 95 53 2 172 266 156 244 1.63e-15 76.6
MS.gene83604.t1 MTR_8g087000 35.870 92 59 0 140 231 45 136 6.26e-15 73.6
MS.gene83604.t1 MTR_3g108960 31.818 110 58 2 124 228 274 371 7.09e-15 75.1
MS.gene83604.t1 MTR_4g130900 43.836 73 40 1 159 231 347 418 9.47e-15 75.1
MS.gene83604.t1 MTR_7g079040 43.077 65 37 0 169 233 152 216 1.17e-14 73.9
MS.gene83604.t1 MTR_0117s0040 43.939 66 37 0 163 228 66 131 1.37e-14 72.4
MS.gene83604.t1 MTR_8g087000 46.667 60 32 0 172 231 78 137 1.43e-14 72.4
MS.gene83604.t1 MTR_4g047580 38.462 78 46 1 155 232 267 342 1.88e-14 74.3
MS.gene83604.t1 MTR_3g031220 50.000 60 28 2 172 231 199 256 3.84e-14 72.8
MS.gene83604.t1 MTR_2g016770 45.000 60 33 0 172 231 36 95 5.41e-14 70.5
MS.gene83604.t1 MTR_2g016770 45.000 60 33 0 172 231 28 87 6.55e-14 70.1
MS.gene83604.t1 MTR_2g024350 45.161 62 34 0 171 232 8 69 7.97e-14 70.1
MS.gene83604.t1 MTR_5g074200 39.394 99 52 4 172 269 221 312 9.56e-14 71.2
MS.gene83604.t1 MTR_1g078260 44.595 74 37 3 156 228 234 304 1.39e-13 71.6
MS.gene83604.t1 MTR_2g083870 36.364 110 66 2 125 231 32 140 1.44e-13 69.7
MS.gene83604.t1 MTR_2g024380 46.774 62 33 0 171 232 251 312 1.67e-13 71.2
MS.gene83604.t1 MTR_6g086555 39.506 81 45 3 156 235 193 270 2.36e-13 70.5
MS.gene83604.t1 MTR_1g099600 43.548 62 35 0 172 233 186 247 7.16e-13 68.6
MS.gene83604.t1 MTR_3g009470 34.783 115 47 4 171 285 280 366 1.93e-12 68.2
MS.gene83604.t1 MTR_5g097500 38.667 75 45 1 158 232 217 290 2.88e-12 66.6
MS.gene83604.t1 MTR_2g075610 42.029 69 38 1 161 227 19 87 3.97e-12 64.3
MS.gene83604.t1 MTR_8g067650 44.444 72 35 1 169 240 337 403 8.68e-12 66.2
MS.gene83604.t1 MTR_8g067635 44.444 72 35 1 169 240 347 413 9.60e-12 65.9
MS.gene83604.t1 MTR_8g099350 47.059 68 32 2 163 226 122 189 9.76e-12 65.5
MS.gene83604.t1 MTR_2g075750 41.176 68 38 1 161 226 18 85 1.06e-11 63.2
MS.gene83604.t1 MTR_5g067680 32.479 117 69 4 120 226 143 259 4.56e-11 63.5
MS.gene83604.t1 MTR_8g069935 42.623 61 35 0 171 231 331 391 5.73e-11 63.5
MS.gene83604.t1 MTR_6g053200 42.188 64 37 0 169 232 328 391 8.35e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83604.t1 AT1G80840 53.474 331 107 12 1 317 1 298 1.33e-98 293
MS.gene83604.t1 AT4G31800 44.282 341 131 10 1 316 1 307 1.29e-78 242
MS.gene83604.t1 AT4G31800 46.947 262 100 7 74 316 1 242 1.07e-67 212
MS.gene83604.t1 AT2G25000 45.660 265 94 8 57 314 2 223 2.03e-63 200
MS.gene83604.t1 AT2G25000 45.660 265 94 8 57 314 2 223 2.03e-63 200
MS.gene83604.t1 AT2G25000 44.765 277 99 8 49 316 37 268 2.47e-63 202
MS.gene83604.t1 AT2G25000 43.986 291 106 9 33 314 3 245 9.53e-63 199
MS.gene83604.t1 AT4G31800 45.494 233 82 8 1 208 1 213 1.56e-49 165
MS.gene83604.t1 AT5G41570 48.936 94 44 3 136 229 66 155 2.85e-23 94.7
MS.gene83604.t1 AT4G01720 25.143 350 152 9 60 310 105 443 4.92e-23 99.4
MS.gene83604.t1 AT4G18170 47.525 101 49 3 133 232 135 232 6.86e-23 97.1
MS.gene83604.t1 AT4G04450 39.252 107 56 1 125 231 161 258 8.61e-23 98.2
MS.gene83604.t1 AT1G64000 52.632 76 33 2 154 229 99 171 8.97e-23 94.0
MS.gene83604.t1 AT1G68150 51.852 81 34 2 151 231 220 295 1.30e-22 97.1
MS.gene83604.t1 AT4G22070 50.000 84 37 2 148 231 279 357 1.56e-22 98.2
MS.gene83604.t1 AT4G22070 50.000 84 37 2 148 231 279 357 1.56e-22 98.2
MS.gene83604.t1 AT4G22070 50.000 84 37 2 148 231 279 357 1.56e-22 98.2
MS.gene83604.t1 AT4G22070 50.000 84 37 2 148 231 279 357 1.56e-22 98.2
MS.gene83604.t1 AT4G04450 39.252 107 56 1 125 231 255 352 2.71e-22 97.4
MS.gene83604.t1 AT1G29860 52.439 82 36 2 156 237 123 201 2.83e-22 94.7
MS.gene83604.t1 AT1G62300 50.000 84 37 2 148 231 294 372 4.07e-22 97.1
MS.gene83604.t1 AT5G15130 38.793 116 55 3 121 231 141 245 1.03e-21 95.9
MS.gene83604.t1 AT5G15130 38.793 116 55 3 121 231 183 287 1.22e-21 95.5
MS.gene83604.t1 AT1G18860 58.065 62 26 0 170 231 238 299 1.78e-21 95.1
MS.gene83604.t1 AT5G07100 33.987 153 80 4 85 232 65 201 3.23e-21 90.5
MS.gene83604.t1 AT5G07100 45.455 77 41 1 159 235 12 87 3.50e-16 76.6
MS.gene83604.t1 AT5G07100 33.987 153 80 4 85 232 65 201 3.23e-21 90.5
MS.gene83604.t1 AT5G07100 45.455 77 41 1 159 235 12 87 3.50e-16 76.6
MS.gene83604.t1 AT5G07100 33.987 153 80 4 85 232 65 201 3.23e-21 90.5
MS.gene83604.t1 AT5G07100 45.455 77 41 1 159 235 12 87 3.50e-16 76.6
MS.gene83604.t1 AT5G07100 33.987 153 80 4 85 232 65 201 3.23e-21 90.5
MS.gene83604.t1 AT5G07100 45.455 77 41 1 159 235 12 87 3.50e-16 76.6
MS.gene83604.t1 AT2G47260 50.000 86 40 2 151 236 156 238 5.05e-21 92.0
MS.gene83604.t1 AT5G49520 51.948 77 34 2 155 231 207 280 5.97e-21 92.8
MS.gene83604.t1 AT5G07100 33.987 153 80 4 85 232 158 294 7.85e-21 91.3
MS.gene83604.t1 AT5G07100 45.455 77 41 1 159 235 105 180 1.20e-15 76.6
MS.gene83604.t1 AT3G62340 53.086 81 35 2 151 231 100 177 9.86e-21 90.5
MS.gene83604.t1 AT2G21900 44.554 101 48 3 133 232 76 169 1.37e-20 88.2
MS.gene83604.t1 AT4G26640 32.512 203 119 6 113 310 144 333 1.42e-20 91.7
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 25 93 3.30e-12 67.0
MS.gene83604.t1 AT4G26640 32.512 203 119 6 113 310 144 333 1.42e-20 91.7
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 25 93 3.30e-12 67.0
MS.gene83604.t1 AT4G26640 32.512 203 119 6 113 310 144 333 1.42e-20 91.7
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 25 93 3.30e-12 67.0
MS.gene83604.t1 AT4G26640 32.512 203 119 6 113 310 144 333 1.42e-20 91.7
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 25 93 3.30e-12 67.0
MS.gene83604.t1 AT5G26170 53.425 73 31 2 156 228 100 169 2.10e-20 87.0
MS.gene83604.t1 AT1G13960 34.694 147 68 3 101 247 366 484 2.28e-20 91.7
MS.gene83604.t1 AT1G13960 50.746 67 31 2 172 238 230 294 2.56e-13 70.9
MS.gene83604.t1 AT4G26640 32.512 203 119 6 113 310 248 437 3.93e-20 90.9
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 129 197 3.72e-12 67.0
MS.gene83604.t1 AT1G13960 34.694 147 68 3 101 247 213 331 4.20e-20 90.1
MS.gene83604.t1 AT1G13960 50.746 67 31 2 172 238 77 141 2.91e-13 70.1
MS.gene83604.t1 AT1G69310 50.000 78 36 2 151 228 129 203 5.38e-20 88.6
MS.gene83604.t1 AT1G69310 50.000 78 36 2 151 228 129 203 5.38e-20 88.6
MS.gene83604.t1 AT1G69310 50.000 78 36 2 151 228 129 203 5.38e-20 88.6
MS.gene83604.t1 AT4G26640 36.429 140 81 3 113 247 280 416 5.62e-20 90.5
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 161 229 3.85e-12 67.4
MS.gene83604.t1 AT4G26640 36.429 140 81 3 113 247 320 456 6.21e-20 90.5
MS.gene83604.t1 AT4G26640 43.662 71 38 2 161 231 201 269 3.84e-12 67.4
MS.gene83604.t1 AT5G46350 40.476 126 54 6 156 280 170 275 8.06e-20 88.6
MS.gene83604.t1 AT5G56270 44.000 100 40 3 133 232 464 547 8.67e-20 90.5
MS.gene83604.t1 AT5G56270 44.737 76 36 3 170 245 272 341 1.64e-12 68.6
MS.gene83604.t1 AT2G03340 56.250 64 27 1 169 232 413 475 9.77e-20 90.1
MS.gene83604.t1 AT2G03340 47.222 72 36 2 172 243 251 320 4.51e-14 73.2
MS.gene83604.t1 AT5G13080 50.000 80 37 2 156 235 54 130 1.86e-19 83.6
MS.gene83604.t1 AT1G55600 50.000 80 37 2 152 231 290 366 2.45e-19 88.6
MS.gene83604.t1 AT1G69810 29.365 252 113 8 43 231 15 264 1.16e-18 86.3
MS.gene83604.t1 AT3G01080 56.667 60 25 1 169 228 342 400 1.21e-18 86.7
MS.gene83604.t1 AT3G01080 56.667 60 25 1 169 228 304 362 1.36e-18 86.3
MS.gene83604.t1 AT2G30250 48.276 87 42 2 146 232 305 388 3.53e-18 84.7
MS.gene83604.t1 AT2G30250 35.577 104 52 4 172 262 167 268 1.53e-12 68.2
MS.gene83604.t1 AT5G64810 37.931 116 67 3 113 228 56 166 4.14e-18 81.3
MS.gene83604.t1 AT3G01970 51.351 74 33 2 155 228 51 121 6.58e-18 79.3
MS.gene83604.t1 AT1G69810 48.750 80 38 2 153 231 129 206 8.36e-18 83.2
MS.gene83604.t1 AT5G52830 42.045 88 51 0 172 259 166 253 8.42e-18 83.2
MS.gene83604.t1 AT2G23320 39.683 126 62 4 103 228 186 297 1.16e-17 82.4
MS.gene83604.t1 AT4G39410 45.783 83 42 2 146 228 200 279 1.44e-17 82.0
MS.gene83604.t1 AT2G46130 48.101 79 38 2 151 229 12 87 1.54e-17 77.4
MS.gene83604.t1 AT2G04880 50.704 71 34 1 169 239 305 374 1.81e-17 83.2
MS.gene83604.t1 AT2G04880 40.244 82 46 3 169 249 109 188 1.44e-12 68.6
MS.gene83604.t1 AT2G04880 50.704 71 34 1 169 239 281 350 1.99e-17 82.8
MS.gene83604.t1 AT2G04880 40.244 82 46 3 169 249 109 188 1.56e-12 68.2
MS.gene83604.t1 AT2G38470 53.125 64 29 1 169 232 360 422 3.04e-17 82.4
MS.gene83604.t1 AT2G38470 39.806 103 54 3 171 273 184 278 2.01e-14 73.9
MS.gene83604.t1 AT2G30590 50.746 67 32 1 169 234 311 377 4.31e-17 81.6
MS.gene83604.t1 AT4G26440 54.688 64 28 1 169 232 370 432 4.35e-17 82.0
MS.gene83604.t1 AT4G26440 44.928 69 32 3 172 240 179 241 1.88e-11 65.1
MS.gene83604.t1 AT4G31550 51.667 60 29 0 169 228 244 303 4.97e-17 80.9
MS.gene83604.t1 AT4G31550 51.667 60 29 0 169 228 243 302 5.02e-17 80.9
MS.gene83604.t1 AT2G44745 38.655 119 68 4 120 236 95 210 5.52e-17 79.0
MS.gene83604.t1 AT1G29280 50.000 60 30 0 172 231 75 134 6.75e-17 79.3
MS.gene83604.t1 AT5G43290 42.857 84 46 2 145 228 89 170 7.27e-17 79.7
MS.gene83604.t1 AT2G34830 35.043 117 70 1 123 233 161 277 8.16e-17 80.9
MS.gene83604.t1 AT2G34830 35.043 117 70 1 123 233 170 286 1.03e-16 80.9
MS.gene83604.t1 AT3G04670 51.667 60 29 0 169 228 260 319 2.96e-16 78.6
MS.gene83604.t1 AT4G24240 44.304 79 43 1 151 228 260 338 4.27e-16 78.2
MS.gene83604.t1 AT2G37260 37.500 120 64 3 113 228 213 325 4.97e-16 78.2
MS.gene83604.t1 AT2G37260 48.000 75 37 2 158 232 72 144 3.88e-14 72.4
MS.gene83604.t1 AT1G69310 48.718 78 33 3 151 228 129 199 5.09e-16 77.4
MS.gene83604.t1 AT2G37260 37.500 120 64 3 113 228 211 323 5.18e-16 78.2
MS.gene83604.t1 AT2G37260 48.000 75 37 2 158 232 70 142 4.09e-14 72.4
MS.gene83604.t1 AT2G37260 37.037 135 69 4 113 238 293 420 8.00e-16 78.2
MS.gene83604.t1 AT2G37260 48.000 75 37 2 158 232 152 224 4.60e-14 72.8
MS.gene83604.t1 AT5G28650 51.667 60 29 0 169 228 260 319 8.02e-16 77.4
MS.gene83604.t1 AT1G30650 45.714 70 38 0 164 233 210 279 8.18e-16 78.2
MS.gene83604.t1 AT2G24570 50.000 60 30 0 169 228 241 300 1.38e-15 76.6
MS.gene83604.t1 AT5G45050 37.500 120 66 2 172 282 1153 1272 1.42e-15 78.2
MS.gene83604.t1 AT5G45050 37.500 120 66 2 172 282 1181 1300 1.46e-15 78.2
MS.gene83604.t1 AT5G45050 37.500 120 66 2 172 282 1042 1161 1.57e-15 77.8
MS.gene83604.t1 AT3G58710 40.323 124 64 3 129 245 24 144 2.10e-15 75.5
MS.gene83604.t1 AT4G01250 38.824 85 52 0 172 256 129 213 2.43e-15 75.5
MS.gene83604.t1 AT3G58710 40.000 125 64 3 129 245 24 145 2.93e-15 75.1
MS.gene83604.t1 AT4G23550 32.192 146 87 4 169 314 138 271 4.07e-15 75.1
MS.gene83604.t1 AT4G30935 42.466 73 41 1 159 231 319 390 4.99e-15 75.9
MS.gene83604.t1 AT2G46130 46.835 79 35 3 151 229 12 83 1.20e-13 66.6
MS.gene83604.t1 AT2G46400 41.096 73 39 2 156 226 91 161 9.54e-12 65.1
MS.gene83604.t1 AT5G45260 37.975 79 47 1 172 248 1209 1287 1.37e-11 65.9
MS.gene83604.t1 AT3G01080 40.000 75 43 2 172 246 206 278 7.95e-11 62.4

Find 59 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTGTGGTACTTCCATTT+TGG 0.140306 2.2:-1475237 None:intergenic
TCATACTTCTTGAAGTTTAC+AGG 0.231811 2.2:-1474253 None:intergenic
AATGGAAGTACCACAGATTT+TGG 0.248540 2.2:+1475241 MS.gene83604:CDS
GCACTTGCTGCTGCCATATC+AGG 0.283466 2.2:+1475311 MS.gene83604:CDS
AATCTAATGGGAGGAGTAAC+TGG 0.300205 2.2:+1474649 MS.gene83604:CDS
GGATATCAGTGGAGAAAATA+TGG 0.332364 2.2:+1474918 MS.gene83604:CDS
GATGATAAATAATCCCAAAA+TGG 0.343074 2.2:+1475223 MS.gene83604:CDS
TTTATCATCATATTCTTAGA+AGG 0.347068 2.2:-1475209 None:intergenic
AATAGTAGAAACTTGCATTA+AGG 0.347618 2.2:+1474729 MS.gene83604:CDS
CAAGTACAGTTACACTTGAT+TGG 0.350481 2.2:+1475162 MS.gene83604:CDS
AAGCAGCAGTAACAATCTAA+TGG 0.359770 2.2:+1474636 MS.gene83604:CDS
AAGGTACTACTGGACTAATT+TGG 0.361772 2.2:-1475130 None:intergenic
TTCTTCTTCACTGTGCAGCT+TGG 0.402986 2.2:-1474999 None:intergenic
AGCATTTGAAGTATGCTCTT+GGG 0.421783 2.2:-1474968 None:intergenic
TTCCTACAACGATTGTTTGT+CGG 0.422479 2.2:-1475107 None:intergenic
CAAGTTTCTACTATTTGCCT+TGG 0.425526 2.2:-1474721 None:intergenic
GGGCTTTGCTCCTTATGATC+AGG 0.429712 2.2:-1474586 None:intergenic
GAGAAAGAATCCTGATCATA+AGG 0.436763 2.2:+1474576 MS.gene83604:CDS
AGCAGCAGTAACAATCTAAT+GGG 0.440609 2.2:+1474637 MS.gene83604:CDS
TCAGTCAAGTGGTGCCTTGG+TGG 0.446693 2.2:+1474450 MS.gene83604:intron
GAGCATTTGAAGTATGCTCT+TGG 0.457888 2.2:-1474969 None:intergenic
ATCATGGATTAACACTTCCT+TGG 0.460598 2.2:+1474189 MS.gene83604:CDS
GTGGAGAAAATATGGACAAA+AGG 0.461765 2.2:+1474926 MS.gene83604:CDS
TTGAAGTATGCTCTTGGGGA+TGG 0.464325 2.2:-1474963 None:intergenic
TTCTTAGAAGGTTCAGAAGA+AGG 0.464649 2.2:-1475197 None:intergenic
CAATCAAGTGTAACTGTACT+TGG 0.475314 2.2:-1475161 None:intergenic
AGCAAAGCCCATCTCAGAAA+AGG 0.487615 2.2:+1474599 MS.gene83604:CDS
GTCAAGTGGTGCCTTGGTGG+AGG 0.490012 2.2:+1474453 MS.gene83604:intron
TGCTCTGAAGTTAAGATCCT+TGG 0.493603 2.2:-1475288 None:intergenic
TGTAAACTTCAAGAAGTATG+AGG 0.496827 2.2:+1474255 MS.gene83604:CDS
TCATCCTCATCCTTCTCAAA+CGG 0.516116 2.2:+1475082 MS.gene83604:CDS
GCAGAAAACAAGAAGTTGAC+AGG 0.521855 2.2:+1474493 MS.gene83604:CDS
TATGTTGCAACCACAACTGA+TGG 0.530178 2.2:-1475044 None:intergenic
CACATTGAGAAACAATCTGA+TGG 0.530744 2.2:+1474546 MS.gene83604:CDS
GGTGCAGAAGAAGGTACTAC+TGG 0.531405 2.2:-1475140 None:intergenic
ACTGTACTTGGTGCAGAAGA+AGG 0.542764 2.2:-1475149 None:intergenic
CAACATTAATCCACGCAGTA+GGG 0.544477 2.2:+1474216 MS.gene83604:CDS
TCAACATTAATCCACGCAGT+AGG 0.551260 2.2:+1474215 MS.gene83604:CDS
GTTGTGGTTGCAACATATGA+AGG 0.552701 2.2:+1475050 MS.gene83604:CDS
AGCCGACAAACAATCGTTGT+AGG 0.557166 2.2:+1475105 MS.gene83604:CDS
TATATCTTCTGCAAAAGAAG+AGG 0.565925 2.2:+1474309 MS.gene83604:CDS
TTTGTCGGCTCCGTTTGAGA+AGG 0.566050 2.2:-1475092 None:intergenic
TGGATTAATGTTGAGATCCA+AGG 0.586656 2.2:-1474206 None:intergenic
GAAGAAGGTGCAAAGAAGTG+TGG 0.601905 2.2:+1475016 MS.gene83604:CDS
ATATGGACAAAAGGTGACAA+GGG 0.608161 2.2:+1474935 MS.gene83604:CDS
ATCAATCATGCAAGAAACCA+AGG 0.612418 2.2:+1474704 MS.gene83604:CDS
GCATTTGAAGTATGCTCTTG+GGG 0.616672 2.2:-1474967 None:intergenic
TACTTCTTGAAGTTTACAGG+AGG 0.621579 2.2:-1474250 None:intergenic
AATATGGACAAAAGGTGACA+AGG 0.623618 2.2:+1474934 MS.gene83604:CDS
ATCTGTTCCACCAAAATCTG+TGG 0.633715 2.2:-1475251 None:intergenic
GGCTCCGTTTGAGAAGGATG+AGG 0.643319 2.2:-1475086 None:intergenic
AAACTTCAAGAAGTATGAGG+TGG 0.647098 2.2:+1474258 MS.gene83604:CDS
TTGTGAAAGATGGATATCAG+TGG 0.648462 2.2:+1474907 MS.gene83604:CDS
TGTGGATGATCCATCAGTTG+TGG 0.652865 2.2:+1475034 MS.gene83604:CDS
AGCAGTAACAATCTAATGGG+AGG 0.658927 2.2:+1474640 MS.gene83604:CDS
AAGCTGCACAGTGAAGAAGA+AGG 0.665099 2.2:+1475001 MS.gene83604:CDS
GATGGCTACTTCATTGACCA+AGG 0.672567 2.2:+1475271 MS.gene83604:CDS
TGTTCATGAACCCTACTGCG+TGG 0.674456 2.2:-1474226 None:intergenic
TCGTTTCAGCTCCTCCACCA+AGG 0.688042 2.2:-1474464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACAATTTTTTCTCATTA+GGG + chr2.2:1474281-1474300 MS.gene83604:CDS 15.0%
!! TTATGAATACTAGATATATG+AGG + chr2.2:1474384-1474403 MS.gene83604:intron 20.0%
!! TTTATCATCATATTCTTAGA+AGG - chr2.2:1475212-1475231 None:intergenic 20.0%
!!! GAAAACAATTTTTTCTCATT+AGG + chr2.2:1474280-1474299 MS.gene83604:CDS 20.0%
! AATAGTAGAAACTTGCATTA+AGG + chr2.2:1474729-1474748 MS.gene83604:CDS 25.0%
! GAAGAAAAATGAATCTTACA+AGG - chr2.2:1474801-1474820 None:intergenic 25.0%
! GATGATAAATAATCCCAAAA+TGG + chr2.2:1475223-1475242 MS.gene83604:CDS 25.0%
!! TACTAGATATATGAGGTTTT+TGG + chr2.2:1474391-1474410 MS.gene83604:intron 25.0%
!! TATTGATATTTTCAGTCAAG+TGG + chr2.2:1474439-1474458 MS.gene83604:intron 25.0%
!! TATTTTCAGATTGTGAAAGA+TGG + chr2.2:1474897-1474916 MS.gene83604:intron 25.0%
AAAGAAGAGGTAAGTTAGTT+TGG + chr2.2:1474322-1474341 MS.gene83604:intron 30.0%
AGTCATACAACCTAATGAAA+TGG - chr2.2:1474841-1474860 None:intergenic 30.0%
ATTTGCAAAGCCATTTCATT+AGG + chr2.2:1474828-1474847 MS.gene83604:intron 30.0%
TATATCTTCTGCAAAAGAAG+AGG + chr2.2:1474309-1474328 MS.gene83604:CDS 30.0%
TCATACTTCTTGAAGTTTAC+AGG - chr2.2:1474256-1474275 None:intergenic 30.0%
! GTAAGTTAGTTTGGTTACTT+TGG + chr2.2:1474331-1474350 MS.gene83604:intron 30.0%
! GTGTAACATTTTTCCTGATA+TGG - chr2.2:1475327-1475346 None:intergenic 30.0%
! TGTAAACTTCAAGAAGTATG+AGG + chr2.2:1474255-1474274 MS.gene83604:CDS 30.0%
AAGCAGCAGTAACAATCTAA+TGG + chr2.2:1474636-1474655 MS.gene83604:CDS 35.0%
AATATGGACAAAAGGTGACA+AGG + chr2.2:1474934-1474953 MS.gene83604:CDS 35.0%
AGCAGCAGTAACAATCTAAT+GGG + chr2.2:1474637-1474656 MS.gene83604:CDS 35.0%
ATATGGACAAAAGGTGACAA+GGG + chr2.2:1474935-1474954 MS.gene83604:CDS 35.0%
ATCAATCATGCAAGAAACCA+AGG + chr2.2:1474704-1474723 MS.gene83604:CDS 35.0%
CAAGTACAGTTACACTTGAT+TGG + chr2.2:1475162-1475181 MS.gene83604:CDS 35.0%
CAAGTTTCTACTATTTGCCT+TGG - chr2.2:1474724-1474743 None:intergenic 35.0%
CAATCAAGTGTAACTGTACT+TGG - chr2.2:1475164-1475183 None:intergenic 35.0%
CACATTGAGAAACAATCTGA+TGG + chr2.2:1474546-1474565 MS.gene83604:CDS 35.0%
GAGAAAGAATCCTGATCATA+AGG + chr2.2:1474576-1474595 MS.gene83604:CDS 35.0%
GGATATCAGTGGAGAAAATA+TGG + chr2.2:1474918-1474937 MS.gene83604:CDS 35.0%
GTGGAGAAAATATGGACAAA+AGG + chr2.2:1474926-1474945 MS.gene83604:CDS 35.0%
TACTTCTTGAAGTTTACAGG+AGG - chr2.2:1474253-1474272 None:intergenic 35.0%
TGGATTAATGTTGAGATCCA+AGG - chr2.2:1474209-1474228 None:intergenic 35.0%
TTCCTACAACGATTGTTTGT+CGG - chr2.2:1475110-1475129 None:intergenic 35.0%
TTCTTAGAAGGTTCAGAAGA+AGG - chr2.2:1475200-1475219 None:intergenic 35.0%
TTGTGAAAGATGGATATCAG+TGG + chr2.2:1474907-1474926 MS.gene83604:CDS 35.0%
! AAACTTCAAGAAGTATGAGG+TGG + chr2.2:1474258-1474277 MS.gene83604:CDS 35.0%
! AAGGTACTACTGGACTAATT+TGG - chr2.2:1475133-1475152 None:intergenic 35.0%
! AATCTGTGGTACTTCCATTT+TGG - chr2.2:1475240-1475259 None:intergenic 35.0%
! AGCATTTGAAGTATGCTCTT+GGG - chr2.2:1474971-1474990 None:intergenic 35.0%
! ATCATGGATTAACACTTCCT+TGG + chr2.2:1474189-1474208 MS.gene83604:CDS 35.0%
! ATCTGTGGTACTTCCATTTT+GGG - chr2.2:1475239-1475258 None:intergenic 35.0%
!! TCAGATTTCCTTTTCTGAGA+TGG - chr2.2:1474610-1474629 None:intergenic 35.0%
!!! AATGGAAGTACCACAGATTT+TGG + chr2.2:1475241-1475260 MS.gene83604:CDS 35.0%
!!! CAGATTTCCTTTTCTGAGAT+GGG - chr2.2:1474609-1474628 None:intergenic 35.0%
AATCTAATGGGAGGAGTAAC+TGG + chr2.2:1474649-1474668 MS.gene83604:CDS 40.0%
AGCAGTAACAATCTAATGGG+AGG + chr2.2:1474640-1474659 MS.gene83604:CDS 40.0%
ATCTGTTCCACCAAAATCTG+TGG - chr2.2:1475254-1475273 None:intergenic 40.0%
CAACATTAATCCACGCAGTA+GGG + chr2.2:1474216-1474235 MS.gene83604:CDS 40.0%
GCAGAAAACAAGAAGTTGAC+AGG + chr2.2:1474493-1474512 MS.gene83604:CDS 40.0%
GTTGTGGTTGCAACATATGA+AGG + chr2.2:1475050-1475069 MS.gene83604:CDS 40.0%
TATGTTGCAACCACAACTGA+TGG - chr2.2:1475047-1475066 None:intergenic 40.0%
TCAACATTAATCCACGCAGT+AGG + chr2.2:1474215-1474234 MS.gene83604:CDS 40.0%
TCATCCTCATCCTTCTCAAA+CGG + chr2.2:1475082-1475101 MS.gene83604:CDS 40.0%
! GAGCATTTGAAGTATGCTCT+TGG - chr2.2:1474972-1474991 None:intergenic 40.0%
! GCATTTGAAGTATGCTCTTG+GGG - chr2.2:1474970-1474989 None:intergenic 40.0%
!! ACAGATTTTGGTGGAACAGA+TGG + chr2.2:1475253-1475272 MS.gene83604:CDS 40.0%
!! TGCTCTGAAGTTAAGATCCT+TGG - chr2.2:1475291-1475310 None:intergenic 40.0%
AAGCTGCACAGTGAAGAAGA+AGG + chr2.2:1475001-1475020 MS.gene83604:CDS 45.0%
AGCAAAGCCCATCTCAGAAA+AGG + chr2.2:1474599-1474618 MS.gene83604:CDS 45.0%
AGCCGACAAACAATCGTTGT+AGG + chr2.2:1475105-1475124 MS.gene83604:CDS 45.0%
GATGGCTACTTCATTGACCA+AGG + chr2.2:1475271-1475290 MS.gene83604:CDS 45.0%
TGTGGATGATCCATCAGTTG+TGG + chr2.2:1475034-1475053 MS.gene83604:CDS 45.0%
TTCTTCTTCACTGTGCAGCT+TGG - chr2.2:1475002-1475021 None:intergenic 45.0%
TTGAAGTATGCTCTTGGGGA+TGG - chr2.2:1474966-1474985 None:intergenic 45.0%
! GAAGAAGGTGCAAAGAAGTG+TGG + chr2.2:1475016-1475035 MS.gene83604:CDS 45.0%
! TTTTCAGTCAAGTGGTGCCT+TGG + chr2.2:1474447-1474466 MS.gene83604:intron 45.0%
!! ACTGTACTTGGTGCAGAAGA+AGG - chr2.2:1475152-1475171 None:intergenic 45.0%
!!! GGAAGTACCACAGATTTTGG+TGG + chr2.2:1475244-1475263 MS.gene83604:CDS 45.0%
GGGCTTTGCTCCTTATGATC+AGG - chr2.2:1474589-1474608 None:intergenic 50.0%
TGTTCATGAACCCTACTGCG+TGG - chr2.2:1474229-1474248 None:intergenic 50.0%
!! GGTGCAGAAGAAGGTACTAC+TGG - chr2.2:1475143-1475162 None:intergenic 50.0%
!! TTTGTCGGCTCCGTTTGAGA+AGG - chr2.2:1475095-1475114 None:intergenic 50.0%
GGCTCCGTTTGAGAAGGATG+AGG - chr2.2:1475089-1475108 None:intergenic 55.0%
TCAGTCAAGTGGTGCCTTGG+TGG + chr2.2:1474450-1474469 MS.gene83604:intron 55.0%
TCGTTTCAGCTCCTCCACCA+AGG - chr2.2:1474467-1474486 None:intergenic 55.0%
! GCACTTGCTGCTGCCATATC+AGG + chr2.2:1475311-1475330 MS.gene83604:CDS 55.0%
GTCAAGTGGTGCCTTGGTGG+AGG + chr2.2:1474453-1474472 MS.gene83604:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1474175 1475355 1474175 ID=MS.gene83604
chr2.2 mRNA 1474175 1475355 1474175 ID=MS.gene83604.t1;Parent=MS.gene83604
chr2.2 exon 1474175 1474330 1474175 ID=MS.gene83604.t1.exon1;Parent=MS.gene83604.t1
chr2.2 CDS 1474175 1474330 1474175 ID=cds.MS.gene83604.t1;Parent=MS.gene83604.t1
chr2.2 exon 1474454 1474801 1474454 ID=MS.gene83604.t1.exon2;Parent=MS.gene83604.t1
chr2.2 CDS 1474454 1474801 1474454 ID=cds.MS.gene83604.t1;Parent=MS.gene83604.t1
chr2.2 exon 1474906 1475355 1474906 ID=MS.gene83604.t1.exon3;Parent=MS.gene83604.t1
chr2.2 CDS 1474906 1475355 1474906 ID=cds.MS.gene83604.t1;Parent=MS.gene83604.t1
Gene Sequence

>MS.gene83604

ATGGATTTTTCATCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCACGCAGTAGGGTTCATGAACAACCTCCTGTAAACTTCAAGAAGTATGAGGTGGAAAACAATTTTTTCTCATTAGGGATGAGTATATCTTCTGCAAAAGAAGAGGTAAGTTAGTTTGGTTACTTTGGTTCTGAATGATTTTCTTATTAGTCAGTACATTATGAATACTAGATATATGAGGTTTTTGGTTTTTACTAATTAAAGTTGCATGAATATTGATATTTTCAGTCAAGTGGTGCCTTGGTGGAGGAGCTGAAACGAGTGAGTGCAGAAAACAAGAAGTTGACAGGAATGTTGACTGAGATGTGTGAGAATTACAACACATTGAGAAACAATCTGATGGAATATATGAGAAAGAATCCTGATCATAAGGAGCAAAGCCCATCTCAGAAAAGGAAATCTGATGAAATAAGCAGCAGTAACAATCTAATGGGAGGAGTAACTGGAAACAACTCTGAGAGCAGTTCAAGTGATGAAGATCAATCATGCAAGAAACCAAGGCAAATAGTAGAAACTTGCATTAAGGCTAAAGTTTCAAGAGTTTATTTCAAGACAGAATCATCTGATTCAAGCCTTGTAAGATTCATTTTTCTTCATTATTAATTTGCAAAGCCATTTCATTAGGTTGTATGACTTGTAAGTGATTTTGTTTGACATTTTTTGTGTTAATTTATTTTCAGATTGTGAAAGATGGATATCAGTGGAGAAAATATGGACAAAAGGTGACAAGGGATAATCCATCCCCAAGAGCATACTTCAAATGCTCATTTGCTCCAAGCTGCACAGTGAAGAAGAAGGTGCAAAGAAGTGTGGATGATCCATCAGTTGTGGTTGCAACATATGAAGGAGAGCATAATCATCCTCATCCTTCTCAAACGGAGCCGACAAACAATCGTTGTAGGAACCAAATTAGTCCAGTAGTACCTTCTTCTGCACCAAGTACAGTTACACTTGATTGGACAAAGAAAGCACCTTCTTCTGAACCTTCTAAGAATATGATGATAAATAATCCCAAAATGGAAGTACCACAGATTTTGGTGGAACAGATGGCTACTTCATTGACCAAGGATCTTAACTTCAGAGCAGCACTTGCTGCTGCCATATCAGGAAAAATGTTACACCAAAATTAG

Protein sequence

>MS.gene83604.t1

MDFSSSWINTSLDLNINPRSRVHEQPPVNFKKYEVENNFFSLGMSISSAKEESSGALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMRKNPDHKEQSPSQKRKSDEISSSNNLMGGVTGNNSESSSSDEDQSCKKPRQIVETCIKAKVSRVYFKTESSDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVDDPSVVVATYEGEHNHPHPSQTEPTNNRCRNQISPVVPSSAPSTVTLDWTKKAPSSEPSKNMMINNPKMEVPQILVEQMATSLTKDLNFRAALAAAISGKMLHQN