Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85519.t1 | XP_003598626.1 | 97.2 | 400 | 8 | 1 | 1 | 397 | 1 | 400 | 4.70E-207 | 730.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85519.t1 | Q8L7A4 | 65.1 | 393 | 122 | 4 | 8 | 397 | 5 | 385 | 9.1e-143 | 508.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85519.t1 | G7IYV8 | 97.2 | 400 | 8 | 1 | 1 | 397 | 1 | 400 | 3.4e-207 | 730.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene85519 | 0.807221 | 5.62E-50 | -1.69E-46 |
| MS.gene051184 | MS.gene85519 | 0.819596 | 1.07E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene85519 | 0.803322 | 3.68E-49 | -1.69E-46 |
| MS.gene051655 | MS.gene85519 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene85519 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene053298 | MS.gene85519 | 0.820246 | 7.59E-53 | -1.69E-46 |
| MS.gene053786 | MS.gene85519 | 0.803716 | 3.05E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene85519 | 0.807771 | 4.30E-50 | -1.69E-46 |
| MS.gene056752 | MS.gene85519 | 0.80692 | 6.51E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene85519 | -0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene058429 | MS.gene85519 | 0.812869 | 3.41E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene85519 | 0.808281 | 3.35E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene85519 | 0.804778 | 1.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85519 | MS.gene74542 | PPI |
| MS.gene85519 | MS.gene03069 | PPI |
| MS.gene02100 | MS.gene85519 | PPI |
| MS.gene85519 | MS.gene47863 | PPI |
| MS.gene85519 | MS.gene003302 | PPI |
| MS.gene27907 | MS.gene85519 | PPI |
| MS.gene85519 | MS.gene058831 | PPI |
| MS.gene058821 | MS.gene85519 | PPI |
| MS.gene85519 | MS.gene023667 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85519.t1 | MTR_3g017500 | 97.000 | 400 | 9 | 1 | 1 | 397 | 1 | 400 | 0.0 | 793 |
| MS.gene85519.t1 | MTR_3g017500 | 90.428 | 397 | 11 | 1 | 1 | 397 | 1 | 370 | 0.0 | 723 |
| MS.gene85519.t1 | MTR_8g038400 | 74.648 | 355 | 89 | 1 | 44 | 397 | 13 | 367 | 0.0 | 545 |
| MS.gene85519.t1 | MTR_8g088320 | 47.727 | 352 | 147 | 5 | 44 | 395 | 6 | 320 | 1.11e-114 | 337 |
| MS.gene85519.t1 | MTR_2g030230 | 45.714 | 350 | 152 | 4 | 48 | 397 | 18 | 329 | 2.86e-107 | 319 |
| MS.gene85519.t1 | MTR_2g011590 | 45.283 | 159 | 78 | 2 | 239 | 393 | 3 | 156 | 1.13e-37 | 134 |
| MS.gene85519.t1 | MTR_3g067585 | 44.444 | 162 | 81 | 2 | 236 | 393 | 1 | 157 | 1.97e-37 | 133 |
| MS.gene85519.t1 | MTR_8g107340 | 41.250 | 160 | 93 | 1 | 236 | 395 | 17 | 175 | 4.56e-37 | 133 |
| MS.gene85519.t1 | MTR_2g027100 | 45.860 | 157 | 84 | 1 | 236 | 391 | 1 | 157 | 2.33e-34 | 125 |
| MS.gene85519.t1 | MTR_1g031650 | 44.231 | 156 | 85 | 2 | 239 | 393 | 5 | 159 | 6.72e-34 | 124 |
| MS.gene85519.t1 | MTR_6g069470 | 38.728 | 173 | 102 | 2 | 223 | 395 | 3 | 171 | 2.89e-31 | 117 |
| MS.gene85519.t1 | MTR_4g084280 | 39.394 | 165 | 91 | 2 | 236 | 396 | 1 | 160 | 1.20e-30 | 115 |
| MS.gene85519.t1 | MTR_6g080710 | 43.478 | 115 | 64 | 1 | 51 | 165 | 19 | 132 | 7.09e-24 | 100 |
| MS.gene85519.t1 | MTR_2g080950 | 41.803 | 122 | 63 | 3 | 51 | 172 | 19 | 132 | 1.86e-23 | 102 |
| MS.gene85519.t1 | MTR_8g464390 | 44.248 | 113 | 55 | 3 | 51 | 163 | 19 | 123 | 9.15e-23 | 100 |
| MS.gene85519.t1 | MTR_1g031650 | 42.623 | 122 | 69 | 1 | 272 | 393 | 2 | 122 | 6.55e-22 | 91.3 |
| MS.gene85519.t1 | MTR_8g100100 | 39.583 | 144 | 61 | 4 | 51 | 169 | 497 | 639 | 2.63e-20 | 93.6 |
| MS.gene85519.t1 | MTR_8g100100 | 39.583 | 144 | 61 | 4 | 51 | 169 | 503 | 645 | 2.87e-20 | 93.6 |
| MS.gene85519.t1 | MTR_7g020860 | 39.552 | 134 | 56 | 3 | 54 | 163 | 508 | 640 | 6.59e-19 | 89.4 |
| MS.gene85519.t1 | MTR_8g067090 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 5.35e-18 | 85.5 |
| MS.gene85519.t1 | MTR_8g471120 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 5.35e-18 | 85.5 |
| MS.gene85519.t1 | MTR_7g020860 | 50.575 | 87 | 40 | 2 | 51 | 135 | 505 | 590 | 5.65e-18 | 86.3 |
| MS.gene85519.t1 | MTR_1g069000 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 9.20e-18 | 85.1 |
| MS.gene85519.t1 | MTR_8g067080 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 9.81e-18 | 84.7 |
| MS.gene85519.t1 | MTR_8g067080 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 1.00e-17 | 84.7 |
| MS.gene85519.t1 | MTR_8g471110 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 1.00e-17 | 84.7 |
| MS.gene85519.t1 | MTR_7g099830 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 3.21e-17 | 83.6 |
| MS.gene85519.t1 | MTR_3g098680 | 35.000 | 140 | 66 | 3 | 48 | 163 | 497 | 635 | 4.90e-17 | 83.6 |
| MS.gene85519.t1 | MTR_4g074170 | 41.818 | 110 | 55 | 5 | 32 | 133 | 457 | 565 | 3.94e-15 | 77.8 |
| MS.gene85519.t1 | MTR_1g008950 | 36.264 | 91 | 56 | 2 | 241 | 329 | 4 | 94 | 5.37e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85519.t1 | AT3G07940 | 66.410 | 390 | 116 | 4 | 11 | 397 | 8 | 385 | 0.0 | 527 |
| MS.gene85519.t1 | AT4G05330 | 48.571 | 350 | 152 | 4 | 48 | 397 | 15 | 336 | 1.94e-117 | 345 |
| MS.gene85519.t1 | AT4G05330 | 48.571 | 350 | 152 | 4 | 48 | 397 | 15 | 336 | 1.94e-117 | 345 |
| MS.gene85519.t1 | AT4G21160 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.52e-117 | 345 |
| MS.gene85519.t1 | AT4G21160 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.52e-117 | 345 |
| MS.gene85519.t1 | AT4G21160 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.52e-117 | 345 |
| MS.gene85519.t1 | AT4G21160 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.52e-117 | 345 |
| MS.gene85519.t1 | AT3G07940 | 58.491 | 265 | 95 | 4 | 11 | 272 | 8 | 260 | 4.04e-106 | 314 |
| MS.gene85519.t1 | AT4G05330 | 48.607 | 323 | 138 | 4 | 75 | 397 | 7 | 301 | 1.30e-104 | 311 |
| MS.gene85519.t1 | AT1G70790 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 4.05e-37 | 133 |
| MS.gene85519.t1 | AT1G70790 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 4.05e-37 | 133 |
| MS.gene85519.t1 | AT1G70790 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 4.05e-37 | 133 |
| MS.gene85519.t1 | AT1G66360 | 42.593 | 162 | 92 | 1 | 236 | 396 | 1 | 162 | 1.06e-36 | 132 |
| MS.gene85519.t1 | AT1G70800 | 42.073 | 164 | 94 | 1 | 228 | 391 | 2 | 164 | 1.87e-36 | 131 |
| MS.gene85519.t1 | AT1G73580 | 42.500 | 160 | 91 | 1 | 236 | 395 | 4 | 162 | 2.66e-36 | 130 |
| MS.gene85519.t1 | AT1G70810 | 41.139 | 158 | 92 | 1 | 236 | 393 | 1 | 157 | 4.04e-34 | 125 |
| MS.gene85519.t1 | AT5G37740 | 41.875 | 160 | 91 | 1 | 236 | 393 | 1 | 160 | 1.33e-33 | 123 |
| MS.gene85519.t1 | AT2G01540 | 42.484 | 153 | 87 | 1 | 240 | 391 | 6 | 158 | 6.07e-33 | 122 |
| MS.gene85519.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.36e-32 | 119 |
| MS.gene85519.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.36e-32 | 119 |
| MS.gene85519.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.36e-32 | 119 |
| MS.gene85519.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.36e-32 | 119 |
| MS.gene85519.t1 | AT1G48590 | 39.024 | 164 | 91 | 2 | 236 | 395 | 6 | 164 | 6.82e-32 | 119 |
| MS.gene85519.t1 | AT1G48590 | 39.024 | 164 | 91 | 2 | 236 | 395 | 6 | 164 | 6.82e-32 | 119 |
| MS.gene85519.t1 | AT1G48590 | 37.097 | 186 | 96 | 3 | 226 | 395 | 15 | 195 | 1.06e-31 | 119 |
| MS.gene85519.t1 | AT1G23140 | 37.888 | 161 | 99 | 1 | 236 | 396 | 1 | 160 | 2.86e-31 | 117 |
| MS.gene85519.t1 | AT3G17980 | 36.585 | 164 | 95 | 2 | 236 | 395 | 13 | 171 | 6.31e-31 | 116 |
| MS.gene85519.t1 | AT5G37740 | 39.412 | 170 | 91 | 2 | 236 | 393 | 1 | 170 | 1.44e-30 | 115 |
| MS.gene85519.t1 | AT5G54310 | 38.235 | 170 | 89 | 3 | 51 | 212 | 19 | 180 | 8.58e-25 | 106 |
| MS.gene85519.t1 | AT3G17660 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 5.65e-24 | 98.2 |
| MS.gene85519.t1 | AT3G17660 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 1.14e-23 | 99.0 |
| MS.gene85519.t1 | AT3G17660 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 3.63e-23 | 97.8 |
| MS.gene85519.t1 | AT1G70790 | 43.697 | 119 | 66 | 1 | 274 | 391 | 3 | 121 | 2.72e-22 | 92.4 |
| MS.gene85519.t1 | AT5G13300 | 46.789 | 109 | 52 | 3 | 29 | 135 | 485 | 589 | 1.79e-19 | 91.3 |
| MS.gene85519.t1 | AT5G61980 | 40.146 | 137 | 57 | 3 | 51 | 163 | 501 | 636 | 9.37e-19 | 89.0 |
| MS.gene85519.t1 | AT2G35210 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 1.31e-17 | 84.0 |
| MS.gene85519.t1 | AT3G17660 | 37.931 | 116 | 48 | 4 | 51 | 163 | 19 | 113 | 1.74e-17 | 81.3 |
| MS.gene85519.t1 | AT2G35210 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 2.39e-17 | 83.6 |
| MS.gene85519.t1 | AT1G48590 | 29.570 | 186 | 78 | 4 | 226 | 395 | 15 | 163 | 2.62e-17 | 79.3 |
| MS.gene85519.t1 | AT5G46750 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 4.12e-17 | 82.8 |
| MS.gene85519.t1 | AT2G37550 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 1.01e-16 | 82.0 |
| MS.gene85519.t1 | AT2G37550 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 1.01e-16 | 82.0 |
| MS.gene85519.t1 | AT1G10870 | 40.000 | 130 | 57 | 5 | 59 | 169 | 478 | 605 | 1.01e-16 | 82.8 |
| MS.gene85519.t1 | AT4G17890 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 1.92e-16 | 80.9 |
| MS.gene85519.t1 | AT3G53710 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.40e-16 | 80.9 |
| MS.gene85519.t1 | AT3G53710 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.40e-16 | 80.9 |
| MS.gene85519.t1 | AT3G53710 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.40e-16 | 80.9 |
| MS.gene85519.t1 | AT4G17890 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 2.63e-16 | 80.5 |
| MS.gene85519.t1 | AT1G10870 | 38.519 | 135 | 57 | 5 | 59 | 169 | 478 | 610 | 4.38e-16 | 80.9 |
| MS.gene85519.t1 | AT1G60860 | 54.688 | 64 | 27 | 1 | 59 | 120 | 367 | 430 | 6.33e-15 | 77.0 |
| MS.gene85519.t1 | AT1G60860 | 54.688 | 64 | 27 | 1 | 59 | 120 | 307 | 370 | 7.30e-15 | 76.6 |
| MS.gene85519.t1 | AT1G60860 | 54.688 | 64 | 27 | 1 | 59 | 120 | 478 | 541 | 7.47e-15 | 77.0 |
| MS.gene85519.t1 | AT1G03370 | 37.778 | 90 | 55 | 1 | 243 | 331 | 3 | 92 | 9.70e-12 | 67.4 |
| MS.gene85519.t1 | AT1G03370 | 37.778 | 90 | 55 | 1 | 243 | 331 | 3 | 92 | 1.75e-11 | 66.6 |
Find 69 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAATACTTACACCCATTT+TGG | 0.186231 | 3.4:+12042758 | None:intergenic |
| ATTAAGGTTAATGTAGTTAA+AGG | 0.211722 | 3.4:-12040650 | MS.gene85519:CDS |
| TGAATTTGTTGGATTGATTA+AGG | 0.287189 | 3.4:-12040666 | MS.gene85519:CDS |
| AGTCAATGCAGCTTGGAAAA+TGG | 0.292719 | 3.4:-12040026 | MS.gene85519:CDS |
| TCTTGCGTGGGATGGTATAA+AGG | 0.303502 | 3.4:+12041477 | None:intergenic |
| GTGGATCATCAGAGCCAAAA+TGG | 0.335283 | 3.4:-12042772 | MS.gene85519:CDS |
| AGAACAATTTAAATCCTGTT+TGG | 0.340329 | 3.4:-12040452 | MS.gene85519:CDS |
| TCAATGGAAGAATTCGGTTT+TGG | 0.341563 | 3.4:+12041695 | None:intergenic |
| ATGAACGTACCTTAGATATA+TGG | 0.344737 | 3.4:+12041932 | None:intergenic |
| GCAGGTATGGTTGAATTTGT+TGG | 0.378256 | 3.4:-12040677 | MS.gene85519:CDS |
| CCTTATGTCATCCTTTCTCT+TGG | 0.379448 | 3.4:-12040590 | MS.gene85519:CDS |
| AACATCAGGTCTTCAAGTCT+TGG | 0.381673 | 3.4:-12042003 | MS.gene85519:intron |
| GTCAATGCAGCTTGGAAAAT+GGG | 0.386273 | 3.4:-12040025 | MS.gene85519:CDS |
| CCTAGGAGTCCATATATCTA+AGG | 0.390014 | 3.4:-12041941 | MS.gene85519:intron |
| TTAAGAGGAGGGATGTTCTC+AGG | 0.396970 | 3.4:+12040405 | None:intergenic |
| AGAGAGCGATGGATGTTATC+TGG | 0.401047 | 3.4:-12042996 | MS.gene85519:intron |
| TCTCTCATCTATTGAGTAAG+AGG | 0.407997 | 3.4:+12039871 | None:intergenic |
| GGCTATCATTTCGAAACAGC+TGG | 0.413504 | 3.4:-12041363 | MS.gene85519:CDS |
| TCTCAGGGATTGACAGCATT+AGG | 0.419633 | 3.4:+12040421 | None:intergenic |
| CGCTCCTCAATGGAAGAATT+CGG | 0.431409 | 3.4:+12041689 | None:intergenic |
| ATTAGGCTTTCATTCCAAAC+AGG | 0.437169 | 3.4:+12040438 | None:intergenic |
| AAACAACTAGAAATCGTATT+GGG | 0.442080 | 3.4:-12041384 | MS.gene85519:CDS |
| AGTCGATTCATTGGTCAACT+TGG | 0.444047 | 3.4:-12041777 | MS.gene85519:CDS |
| CAAACAACTAGAAATCGTAT+TGG | 0.459695 | 3.4:-12041385 | MS.gene85519:CDS |
| TTTATTTGCATCAAGTGCTC+TGG | 0.459972 | 3.4:-12041976 | MS.gene85519:CDS |
| GGAATAATATCTCTTGAAGA+AGG | 0.465885 | 3.4:-12039970 | MS.gene85519:CDS |
| TTTACTGTTATAGGCAGGTA+TGG | 0.466561 | 3.4:-12040690 | MS.gene85519:intron |
| GACAATCTGATGCGTCAAGC+AGG | 0.474603 | 3.4:-12042815 | MS.gene85519:CDS |
| AAAATCAGAGCGCTCCTCAA+TGG | 0.477617 | 3.4:+12041679 | None:intergenic |
| AGACGAACAAGTCGATTCAT+TGG | 0.483436 | 3.4:-12041786 | MS.gene85519:CDS |
| GTTTGAGGAACTGCTCTGAC+TGG | 0.484449 | 3.4:+12041444 | None:intergenic |
| TGAAGAAGGGAAAGTGAGAC+AGG | 0.489048 | 3.4:-12039956 | MS.gene85519:CDS |
| TTGTGGAGGATTGTAGTTTG+AGG | 0.495974 | 3.4:+12041429 | None:intergenic |
| CTTGCGTGGGATGGTATAAA+GGG | 0.496671 | 3.4:+12041478 | None:intergenic |
| TGTCACTGAATCTAGATGAA+TGG | 0.499000 | 3.4:-12041811 | MS.gene85519:CDS |
| CCAAGAGAAAGGATGACATA+AGG | 0.500819 | 3.4:+12040590 | None:intergenic |
| TGACTTTGAGAATTTAAACT+TGG | 0.501348 | 3.4:+12043020 | None:intergenic |
| GATTCATTGGTCAACTTGGG+TGG | 0.513627 | 3.4:-12041773 | MS.gene85519:CDS |
| TCACTATATCTCTGATAGCT+AGG | 0.520516 | 3.4:+12040621 | None:intergenic |
| CAAGAGAAAGGATGACATAA+GGG | 0.522273 | 3.4:+12040591 | None:intergenic |
| CCTTAGATATATGGACTCCT+AGG | 0.529324 | 3.4:+12041941 | None:intergenic |
| GTCGATTCATTGGTCAACTT+GGG | 0.529688 | 3.4:-12041776 | MS.gene85519:CDS |
| GACAATACACTTGTGAAAGA+TGG | 0.535420 | 3.4:-12039991 | MS.gene85519:CDS |
| TGGATCATCAGAGCCAAAAT+GGG | 0.539189 | 3.4:-12042771 | MS.gene85519:CDS |
| ATCATGGAGTCAATGCAGCT+TGG | 0.540788 | 3.4:-12040033 | MS.gene85519:CDS |
| TAAGAGGAGGGATGTTCTCA+GGG | 0.542262 | 3.4:+12040406 | None:intergenic |
| TCACTTGGTGACCAAGAGAA+AGG | 0.546656 | 3.4:+12040579 | None:intergenic |
| GCTATCATTTCGAAACAGCT+GGG | 0.550078 | 3.4:-12041362 | MS.gene85519:CDS |
| ATATGAGAAATCATCAATCA+TGG | 0.553492 | 3.4:-12040049 | MS.gene85519:CDS |
| TGGATGAAGTTGTTCTTGCG+TGG | 0.558865 | 3.4:+12041464 | None:intergenic |
| CAGTGCAAAAGAGATCATAA+AGG | 0.562906 | 3.4:+12043048 | None:intergenic |
| GGATGAAGTTGTTCTTGCGT+GGG | 0.571202 | 3.4:+12041465 | None:intergenic |
| GATCACTAGGTCCACAGGAA+AGG | 0.571277 | 3.4:-12042841 | MS.gene85519:intron |
| AACAAGTTCTGTGCTGATTG+TGG | 0.576035 | 3.4:-12042791 | MS.gene85519:CDS |
| CTTCCGATCACTAGGTCCAC+AGG | 0.578366 | 3.4:-12042846 | MS.gene85519:intron |
| AAAACCGAATTCTTCCATTG+AGG | 0.580396 | 3.4:-12041693 | MS.gene85519:CDS |
| GAATAATATCTCTTGAAGAA+GGG | 0.592669 | 3.4:-12039969 | MS.gene85519:CDS |
| TACAAAGAAGAGTAACTCGT+TGG | 0.593650 | 3.4:-12041314 | MS.gene85519:intron |
| TCTGAAATCAATAGTATACC+AGG | 0.593876 | 3.4:-12044808 | MS.gene85519:intron |
| GAAGTTGTTCTTGCGTGGGA+TGG | 0.594112 | 3.4:+12041469 | None:intergenic |
| TCTGGTATACATAGAAGCCT+AGG | 0.599149 | 3.4:-12041958 | MS.gene85519:CDS |
| AGATTGTCTAACCTTTCCTG+TGG | 0.600164 | 3.4:+12042830 | None:intergenic |
| CTCAAAGTCAAAGAGAGCGA+TGG | 0.600889 | 3.4:-12043007 | MS.gene85519:CDS |
| GGGACAAATCAAATTCTCCT+CGG | 0.602338 | 3.4:+12041498 | None:intergenic |
| ACAATCTGATGCGTCAAGCA+GGG | 0.621759 | 3.4:-12042814 | MS.gene85519:CDS |
| CTTGGAAAATGGGTAGCAAG+TGG | 0.649585 | 3.4:-12040015 | MS.gene85519:CDS |
| AGGCTACAAAATGTTGAGAG+AGG | 0.650552 | 3.4:-12039922 | MS.gene85519:CDS |
| CTATCATTTCGAAACAGCTG+GGG | 0.665639 | 3.4:-12041361 | MS.gene85519:CDS |
| TGAGACAGGAAATCTCATTG+AGG | 0.699747 | 3.4:-12039942 | MS.gene85519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATCAAAACTAAAT+TGG | + | chr3.4:12042233-12042252 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTAAGTTAATTA+GGG | - | chr3.4:12040764-12040783 | MS.gene85519:intron | 10.0% |
| !!! | TTTTGAATTTTAAGTTAATT+AGG | - | chr3.4:12040763-12040782 | MS.gene85519:intron | 10.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | + | chr3.4:12041748-12041767 | None:intergenic | 15.0% |
| !! | TAATAGAACAAAAAAATTAC+AGG | + | chr3.4:12043558-12043577 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | + | chr3.4:12041749-12041768 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATTTTATTATCC+AGG | - | chr3.4:12043159-12043178 | MS.gene85519:intron | 15.0% |
| !!! | TTGAAATATTACATTTTTCT+TGG | - | chr3.4:12043968-12043987 | MS.gene85519:intron | 15.0% |
| !!! | TTTTAAATTATTATCTGTGT+CGG | + | chr3.4:12040140-12040159 | None:intergenic | 15.0% |
| !! | AAAAGAAAAGTGAAAAACAA+TGG | + | chr3.4:12043145-12043164 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAATTTGTCCG+AGG | + | chr3.4:12042544-12042563 | None:intergenic | 20.0% |
| !! | AAATGTTACATAGACTAAAA+TGG | + | chr3.4:12043595-12043614 | None:intergenic | 20.0% |
| !! | AAATTAAACATGATCTATGA+GGG | - | chr3.4:12041020-12041039 | MS.gene85519:intron | 20.0% |
| !! | AAATTAAATGTCTCAATTGT+AGG | - | chr3.4:12041625-12041644 | MS.gene85519:intron | 20.0% |
| !! | AACTATCCTATTAATCTATA+AGG | + | chr3.4:12040817-12040836 | None:intergenic | 20.0% |
| !! | AAGCAAAAAATATATACTAC+AGG | - | chr3.4:12043757-12043776 | MS.gene85519:intron | 20.0% |
| !! | ACAATAAATTATCTGTTATC+AGG | - | chr3.4:12041055-12041074 | MS.gene85519:intron | 20.0% |
| !! | AGCAAAAAATATATACTACA+GGG | - | chr3.4:12043758-12043777 | MS.gene85519:intron | 20.0% |
| !! | ATAGACTAAAATGGAAAAAT+AGG | + | chr3.4:12043586-12043605 | None:intergenic | 20.0% |
| !! | ATTAAGGTTAATGTAGTTAA+AGG | - | chr3.4:12044061-12044080 | MS.gene85519:intron | 20.0% |
| !! | ATTCATATTTATCTTGAGAT+AGG | - | chr3.4:12043116-12043135 | MS.gene85519:intron | 20.0% |
| !! | TACAAATGCTTAAAAACAAA+CGG | + | chr3.4:12041462-12041481 | None:intergenic | 20.0% |
| !! | TAGACTAAAATGGAAAAATA+GGG | + | chr3.4:12043585-12043604 | None:intergenic | 20.0% |
| !! | TTCAGTGTAATTATATTTGT+CGG | + | chr3.4:12040644-12040663 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTCTGAATTTTG+AGG | - | chr3.4:12040855-12040874 | MS.gene85519:intron | 20.0% |
| !!! | ATTCAAAAATGACGATTTTA+TGG | - | chr3.4:12044593-12044612 | MS.gene85519:intron | 20.0% |
| !!! | ATTCAACTTACTATTTTAAG+AGG | + | chr3.4:12044324-12044343 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTCTGAATTTTGA+GGG | - | chr3.4:12040856-12040875 | MS.gene85519:intron | 20.0% |
| !!! | TAATTTGTTTATCCAAACAT+GGG | + | chr3.4:12042275-12042294 | None:intergenic | 20.0% |
| !!! | TCCATTTTCTTAAATATTAC+TGG | + | chr3.4:12041259-12041278 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+TGG | + | chr3.4:12042276-12042295 | None:intergenic | 20.0% |
| !!! | TTCAAAAATGACGATTTTAT+GGG | - | chr3.4:12044594-12044613 | MS.gene85519:intron | 20.0% |
| ! | AAACAACTAGAAATCGTATT+GGG | - | chr3.4:12043327-12043346 | MS.gene85519:intron | 25.0% |
| ! | ACAGATAATTTATTGTAGAC+AGG | + | chr3.4:12041051-12041070 | None:intergenic | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr3.4:12040165-12040184 | MS.gene85519:intron | 25.0% |
| ! | ACATGATTTGACATGATTAT+AGG | - | chr3.4:12042874-12042893 | MS.gene85519:intron | 25.0% |
| ! | ACTTATCATAATGTTTGCAA+AGG | - | chr3.4:12044181-12044200 | MS.gene85519:intron | 25.0% |
| ! | AGAACAATTTAAATCCTGTT+TGG | - | chr3.4:12044259-12044278 | MS.gene85519:intron | 25.0% |
| ! | ATATGAGAAATCATCAATCA+TGG | - | chr3.4:12044662-12044681 | MS.gene85519:intron | 25.0% |
| ! | ATCAAATAACCAACATTATC+CGG | - | chr3.4:12041765-12041784 | MS.gene85519:CDS | 25.0% |
| ! | ATTCATTACATCACTTTGAT+GGG | + | chr3.4:12039969-12039988 | None:intergenic | 25.0% |
| ! | CATCATTTGAAAAATAAGCA+TGG | - | chr3.4:12044365-12044384 | MS.gene85519:intron | 25.0% |
| ! | CTAAAGATGGATATATTACA+GGG | + | chr3.4:12043518-12043537 | None:intergenic | 25.0% |
| ! | GAAATTAAACATGATCTATG+AGG | - | chr3.4:12041019-12041038 | MS.gene85519:intron | 25.0% |
| ! | GAATAATATCTCTTGAAGAA+GGG | - | chr3.4:12044742-12044761 | MS.gene85519:intron | 25.0% |
| ! | GCCAGTAATATTTAAGAAAA+TGG | - | chr3.4:12041255-12041274 | MS.gene85519:intron | 25.0% |
| ! | TGAGTTCCTTATAGATTAAT+AGG | - | chr3.4:12040808-12040827 | MS.gene85519:intron | 25.0% |
| ! | TGCTAAAACAAAATGTTACA+AGG | - | chr3.4:12043834-12043853 | MS.gene85519:intron | 25.0% |
| ! | TTGAAAAATAAGCATGGAAT+TGG | - | chr3.4:12044371-12044390 | MS.gene85519:intron | 25.0% |
| !! | AATTTGTTTATCCAAACATG+GGG | + | chr3.4:12042274-12042293 | None:intergenic | 25.0% |
| !! | ACTTTGAGAATTTAAACTTG+AGG | - | chr3.4:12041410-12041429 | MS.gene85519:CDS | 25.0% |
| !! | GATTTTATTAGGTAACTAAC+TGG | - | chr3.4:12043049-12043068 | MS.gene85519:CDS | 25.0% |
| !! | TGACTTTGAGAATTTAAACT+TGG | + | chr3.4:12041427-12041408 | None:intergenic | 25.0% |
| !! | TTTAATTTCTTTCCTTGAGA+AGG | + | chr3.4:12041008-12041027 | None:intergenic | 25.0% |
| !!! | AACTCGACTTTTTTTTCATA+AGG | + | chr3.4:12041439-12041458 | None:intergenic | 25.0% |
| !!! | AACTTACTATTTTAAGAGGA+GGG | + | chr3.4:12044320-12044339 | None:intergenic | 25.0% |
| !!! | TCATAACGTTTTTTTTCTTG+TGG | + | chr3.4:12043302-12043321 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTGGATTGATTA+AGG | - | chr3.4:12044045-12044064 | MS.gene85519:intron | 25.0% |
| !!! | TTGTTTGAAAAGCATTATCT+TGG | - | chr3.4:12042022-12042041 | MS.gene85519:intron | 25.0% |
| !!! | TTTGGTTTTTTTATGTAGCT+TGG | + | chr3.4:12043001-12043020 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGATAAGTGCTTA+TGG | - | chr3.4:12042366-12042385 | MS.gene85519:intron | 25.0% |
| AAACTATACAAATCATGCTG+CGG | + | chr3.4:12042189-12042208 | None:intergenic | 30.0% | |
| AAATGATGTCTCACAGAAAA+TGG | + | chr3.4:12044353-12044372 | None:intergenic | 30.0% | |
| AAGGAACAATAAGATTTGTG+TGG | + | chr3.4:12042079-12042098 | None:intergenic | 30.0% | |
| AATTAGGGATGTTACTACAA+TGG | - | chr3.4:12040779-12040798 | MS.gene85519:intron | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | + | chr3.4:12041834-12041853 | None:intergenic | 30.0% | |
| ATAGAAAGTTTCATGTCTCA+AGG | + | chr3.4:12042605-12042624 | None:intergenic | 30.0% | |
| ATGAACGTACCTTAGATATA+TGG | + | chr3.4:12042782-12042801 | None:intergenic | 30.0% | |
| CAAACAACTAGAAATCGTAT+TGG | - | chr3.4:12043326-12043345 | MS.gene85519:intron | 30.0% | |
| CATCAAAGTGATGTAATGAA+TGG | - | chr3.4:12039968-12039987 | MS.gene85519:CDS | 30.0% | |
| CATGTTTAACCAAAACAAAG+AGG | + | chr3.4:12040455-12040474 | None:intergenic | 30.0% | |
| CATTCATTACATCACTTTGA+TGG | + | chr3.4:12039970-12039989 | None:intergenic | 30.0% | |
| CCTAAAGATGGATATATTAC+AGG | + | chr3.4:12043519-12043538 | None:intergenic | 30.0% | |
| CCTGTAATATATCCATCTTT+AGG | - | chr3.4:12043516-12043535 | MS.gene85519:intron | 30.0% | |
| CTTCAAATTAAAGGTTTGTC+AGG | + | chr3.4:12041319-12041338 | None:intergenic | 30.0% | |
| CTTTGAGTCTCTAACATATA+GGG | + | chr3.4:12043740-12043759 | None:intergenic | 30.0% | |
| GAAACAATAAAAGAGACAGA+TGG | + | chr3.4:12041369-12041388 | None:intergenic | 30.0% | |
| GAACAACAAGAATAAGTCAT+TGG | - | chr3.4:12040001-12040020 | MS.gene85519:CDS | 30.0% | |
| GGAATAATATCTCTTGAAGA+AGG | - | chr3.4:12044741-12044760 | MS.gene85519:intron | 30.0% | |
| GTCAGTGTAATTATATGAGT+CGG | + | chr3.4:12040615-12040634 | None:intergenic | 30.0% | |
| GTTTATGATAAACCAATCCA+TGG | - | chr3.4:12040474-12040493 | MS.gene85519:CDS | 30.0% | |
| GTTTCAACAAAACCTAAAGA+TGG | + | chr3.4:12043531-12043550 | None:intergenic | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | + | chr3.4:12041835-12041854 | None:intergenic | 30.0% | |
| TCCCTATATGTTTGAAAACT+CGG | - | chr3.4:12043632-12043651 | MS.gene85519:intron | 30.0% | |
| TCTCAGTTATAACTTAGACA+AGG | + | chr3.4:12042098-12042117 | None:intergenic | 30.0% | |
| TTAATATCTGATCTTGCAGT+CGG | - | chr3.4:12044218-12044237 | MS.gene85519:intron | 30.0% | |
| TTCATTACATCACTTTGATG+GGG | + | chr3.4:12039968-12039987 | None:intergenic | 30.0% | |
| TTCTCCCTATTTACTGTTAT+AGG | - | chr3.4:12044012-12044031 | MS.gene85519:intron | 30.0% | |
| TTGACTTATTTAAGCTGATC+TGG | + | chr3.4:12042459-12042478 | None:intergenic | 30.0% | |
| TTTCTCAAGACATCTTGTAT+TGG | - | chr3.4:12041084-12041103 | MS.gene85519:intron | 30.0% | |
| ! | ACCGAGTTTTCAAACATATA+GGG | + | chr3.4:12043636-12043655 | None:intergenic | 30.0% |
| ! | AGGGATAAAGGTATATTACA+GGG | - | chr3.4:12043884-12043903 | MS.gene85519:intron | 30.0% |
| ! | AGGTATAGAAAGTTTTTACC+TGG | + | chr3.4:12039924-12039943 | None:intergenic | 30.0% |
| ! | AGTTGAAATTGATAGTCCTA+AGG | + | chr3.4:12042132-12042151 | None:intergenic | 30.0% |
| ! | ATATGAGCTGCAACAATTTT+TGG | - | chr3.4:12043187-12043206 | MS.gene85519:intron | 30.0% |
| ! | ATCACAAGAAGTTTAGAATG+AGG | - | chr3.4:12042574-12042593 | MS.gene85519:intron | 30.0% |
| ! | TACCGAGTTTTCAAACATAT+AGG | + | chr3.4:12043637-12043656 | None:intergenic | 30.0% |
| ! | TAGGGATAAAGGTATATTAC+AGG | - | chr3.4:12043883-12043902 | MS.gene85519:intron | 30.0% |
| ! | TCTGAAATCAATAGTATACC+AGG | - | chr3.4:12039903-12039922 | MS.gene85519:CDS | 30.0% |
| ! | TTACTTCTTAAGCGATGTTT+TGG | - | chr3.4:12044429-12044448 | MS.gene85519:intron | 30.0% |
| !! | CAACTTACTATTTTAAGAGG+AGG | + | chr3.4:12044321-12044340 | None:intergenic | 30.0% |
| !! | CATAGGTATTGAATTGTTGT+CGG | - | chr3.4:12040182-12040201 | MS.gene85519:intron | 30.0% |
| !!! | AATTTTGGCTCATTCAAAAG+TGG | + | chr3.4:12044457-12044476 | None:intergenic | 30.0% |
| !!! | TAACGTTTTTTTTCTTGTGG+AGG | + | chr3.4:12043299-12043318 | None:intergenic | 30.0% |
| AAAACCGAATTCTTCCATTG+AGG | - | chr3.4:12043018-12043037 | MS.gene85519:CDS | 35.0% | |
| AACATAAACACTTGTGAGAC+CGG | + | chr3.4:12041787-12041806 | None:intergenic | 35.0% | |
| AATGTCTCAATTGTAGGATC+AGG | - | chr3.4:12041631-12041650 | MS.gene85519:intron | 35.0% | |
| AATTGAAGACGTGTATGTGT+TGG | - | chr3.4:12040059-12040078 | MS.gene85519:CDS | 35.0% | |
| ACCTGCCTATAACAGTAAAT+AGG | + | chr3.4:12044020-12044039 | None:intergenic | 35.0% | |
| ACGTTTAATTACCCCATGTT+TGG | - | chr3.4:12042260-12042279 | MS.gene85519:intron | 35.0% | |
| ACTGAGAATCATCTTGAGAA+TGG | - | chr3.4:12043913-12043932 | MS.gene85519:intron | 35.0% | |
| AGAAATCGAACGCAAACTAT+AGG | + | chr3.4:12044506-12044525 | None:intergenic | 35.0% | |
| AGCTTCTGATGTTTCTTGTA+TGG | - | chr3.4:12041168-12041187 | MS.gene85519:intron | 35.0% | |
| ATTAGGCTTTCATTCCAAAC+AGG | + | chr3.4:12044276-12044295 | None:intergenic | 35.0% | |
| ATTTCTTTCCTTGAGAAGGT+TGG | + | chr3.4:12041004-12041023 | None:intergenic | 35.0% | |
| CAAGAGAAAGGATGACATAA+GGG | + | chr3.4:12044123-12044142 | None:intergenic | 35.0% | |
| CACAAACACTCTTTGGATTA+GGG | + | chr3.4:12040243-12040262 | None:intergenic | 35.0% | |
| CAGTGCAAAAGAGATCATAA+AGG | + | chr3.4:12041666-12041685 | None:intergenic | 35.0% | |
| CCTGCCTATAACAGTAAATA+GGG | + | chr3.4:12044019-12044038 | None:intergenic | 35.0% | |
| CTGAGAATCATCTTGAGAAT+GGG | - | chr3.4:12043914-12043933 | MS.gene85519:intron | 35.0% | |
| GACAATACACTTGTGAAAGA+TGG | - | chr3.4:12044720-12044739 | MS.gene85519:intron | 35.0% | |
| GTTTAACCAAAACAAAGAGG+AGG | + | chr3.4:12040452-12040471 | None:intergenic | 35.0% | |
| GTTTATCTCTCCTACTTGTA+AGG | - | chr3.4:12042500-12042519 | MS.gene85519:intron | 35.0% | |
| TACAAAGAAGAGTAACTCGT+TGG | - | chr3.4:12043397-12043416 | MS.gene85519:intron | 35.0% | |
| TATGAAGCACAAACACTCTT+TGG | + | chr3.4:12040250-12040269 | None:intergenic | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | + | chr3.4:12041825-12041844 | None:intergenic | 35.0% | |
| TCACTATATCTCTGATAGCT+AGG | + | chr3.4:12044093-12044112 | None:intergenic | 35.0% | |
| TCATGACAAGCTATGAAACA+CGG | - | chr3.4:12040543-12040562 | MS.gene85519:intron | 35.0% | |
| TCGTATACAATCTGCATGTA+AGG | + | chr3.4:12044564-12044583 | None:intergenic | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | - | chr3.4:12042900-12042919 | MS.gene85519:intron | 35.0% | |
| TTGCATTAGTCACTACCATA+TGG | + | chr3.4:12040903-12040922 | None:intergenic | 35.0% | |
| TTTACTGTTATAGGCAGGTA+TGG | - | chr3.4:12044021-12044040 | MS.gene85519:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | - | chr3.4:12042735-12042754 | MS.gene85519:intron | 35.0% | |
| TTTCTTTCCTTGAGAAGGTT+GGG | + | chr3.4:12041003-12041022 | None:intergenic | 35.0% | |
| TTTGTCGCAATTTCACAAGT+CGG | - | chr3.4:12041569-12041588 | MS.gene85519:intron | 35.0% | |
| ! | AAATGACGATTTTATGGGAG+AGG | - | chr3.4:12044599-12044618 | MS.gene85519:intron | 35.0% |
| ! | ACAAACACTCTTTGGATTAG+GGG | + | chr3.4:12040242-12040261 | None:intergenic | 35.0% |
| ! | ACGTCTTCAATTTGAAGTGT+CGG | + | chr3.4:12040051-12040070 | None:intergenic | 35.0% |
| ! | CAAGAAACATCAGAAGCTTT+TGG | + | chr3.4:12041166-12041185 | None:intergenic | 35.0% |
| ! | CTCAAGATGATTCTCAGTTT+TGG | + | chr3.4:12043911-12043930 | None:intergenic | 35.0% |
| ! | GCACTGTCACTTCAAATTAA+AGG | + | chr3.4:12041328-12041347 | None:intergenic | 35.0% |
| ! | GCTTTGAGTCTCTAACATAT+AGG | + | chr3.4:12043741-12043760 | None:intergenic | 35.0% |
| ! | GTGAATACTTACACCCATTT+TGG | + | chr3.4:12041956-12041975 | None:intergenic | 35.0% |
| ! | TACACCTCTAGCATCAATTT+TGG | + | chr3.4:12044472-12044491 | None:intergenic | 35.0% |
| ! | TCAATGGAAGAATTCGGTTT+TGG | + | chr3.4:12043019-12043038 | None:intergenic | 35.0% |
| !!! | TAAGCATGGAATTGGTCTTT+TGG | - | chr3.4:12044379-12044398 | MS.gene85519:intron | 35.0% |
| !!! | TTTTGCCTCTGGCTTTAAAT+GGG | + | chr3.4:12043717-12043736 | None:intergenic | 35.0% |
| AACATCAGGTCTTCAAGTCT+TGG | - | chr3.4:12042708-12042727 | MS.gene85519:intron | 40.0% | |
| AGATTGTCTAACCTTTCCTG+TGG | + | chr3.4:12041884-12041903 | None:intergenic | 40.0% | |
| AGGAGAGATAAACCACACTA+AGG | + | chr3.4:12042493-12042512 | None:intergenic | 40.0% | |
| AGGCTACAAAATGTTGAGAG+AGG | - | chr3.4:12044789-12044808 | MS.gene85519:intron | 40.0% | |
| AGTCAATGCAGCTTGGAAAA+TGG | - | chr3.4:12044685-12044704 | MS.gene85519:intron | 40.0% | |
| AGTGACAGTGCTACATACAA+AGG | - | chr3.4:12041337-12041356 | MS.gene85519:CDS | 40.0% | |
| ATCTCTTCTCAACCATGGAT+TGG | + | chr3.4:12040489-12040508 | None:intergenic | 40.0% | |
| ATTACATCACTTTGATGGGG+AGG | + | chr3.4:12039965-12039984 | None:intergenic | 40.0% | |
| CCAAGAGAAAGGATGACATA+AGG | + | chr3.4:12044124-12044143 | None:intergenic | 40.0% | |
| CCCTATTTACTGTTATAGGC+AGG | - | chr3.4:12044016-12044035 | MS.gene85519:intron | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | - | chr3.4:12042770-12042789 | MS.gene85519:CDS | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | + | chr3.4:12042773-12042792 | None:intergenic | 40.0% | |
| CCTTATGTCATCCTTTCTCT+TGG | - | chr3.4:12044121-12044140 | MS.gene85519:intron | 40.0% | |
| CTATCATTTCGAAACAGCTG+GGG | - | chr3.4:12043350-12043369 | MS.gene85519:intron | 40.0% | |
| CTGAATATAACCACCTGTGT+TGG | + | chr3.4:12040298-12040317 | None:intergenic | 40.0% | |
| GAGTTTCACTTGCAAGAGAA+AGG | - | chr3.4:12041486-12041505 | MS.gene85519:CDS | 40.0% | |
| GATATATGAGACACCAACAC+AGG | - | chr3.4:12040282-12040301 | MS.gene85519:intron | 40.0% | |
| GCACAAACACTCTTTGGATT+AGG | + | chr3.4:12040244-12040263 | None:intergenic | 40.0% | |
| GCAGGTATGGTTGAATTTGT+TGG | - | chr3.4:12044034-12044053 | MS.gene85519:intron | 40.0% | |
| GCTATCATTTCGAAACAGCT+GGG | - | chr3.4:12043349-12043368 | MS.gene85519:intron | 40.0% | |
| GGAAGAAAGAATGAGGGAAA+AGG | + | chr3.4:12039944-12039963 | None:intergenic | 40.0% | |
| GGAGAGATAAACCACACTAA+GGG | + | chr3.4:12042492-12042511 | None:intergenic | 40.0% | |
| GGGACAAATCAAATTCTCCT+CGG | + | chr3.4:12043216-12043235 | None:intergenic | 40.0% | |
| GGTGTAGTATCTATGAAGCA+CGG | - | chr3.4:12040080-12040099 | MS.gene85519:CDS | 40.0% | |
| GTCAATGCAGCTTGGAAAAT+GGG | - | chr3.4:12044686-12044705 | MS.gene85519:intron | 40.0% | |
| GTGACAGTGCTACATACAAA+GGG | - | chr3.4:12041338-12041357 | MS.gene85519:CDS | 40.0% | |
| GTGACATGAAAACACTCACT+TGG | + | chr3.4:12044150-12044169 | None:intergenic | 40.0% | |
| GTGTATAATGGTATCTCGAC+AGG | - | chr3.4:12041593-12041612 | MS.gene85519:intron | 40.0% | |
| GTTTGCGTTCGATTTCTTTC+TGG | - | chr3.4:12044509-12044528 | MS.gene85519:intron | 40.0% | |
| TAACCAAAACAAAGAGGAGG+AGG | + | chr3.4:12040449-12040468 | None:intergenic | 40.0% | |
| TACTTGTCGTCTATGAACCA+CGG | + | chr3.4:12040742-12040761 | None:intergenic | 40.0% | |
| TATGAAACACGGATACTCCT+CGG | - | chr3.4:12040554-12040573 | MS.gene85519:intron | 40.0% | |
| TCTGGTATACATAGAAGCCT+AGG | - | chr3.4:12042753-12042772 | MS.gene85519:intron | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | - | chr3.4:12042113-12042132 | MS.gene85519:intron | 40.0% | |
| TGAGACAGGAAATCTCATTG+AGG | - | chr3.4:12044769-12044788 | MS.gene85519:intron | 40.0% | |
| TGAGCCAAAATTGATGCTAG+AGG | - | chr3.4:12044465-12044484 | MS.gene85519:intron | 40.0% | |
| TGGATCATCAGAGCCAAAAT+GGG | - | chr3.4:12041940-12041959 | MS.gene85519:intron | 40.0% | |
| TTAGCACTTGTGAGAGCTTA+TGG | + | chr3.4:12042434-12042453 | None:intergenic | 40.0% | |
| TTAGTCACTACCATATGGTG+CGG | + | chr3.4:12040898-12040917 | None:intergenic | 40.0% | |
| TTGTGGAGGATTGTAGTTTG+AGG | + | chr3.4:12043285-12043304 | None:intergenic | 40.0% | |
| ! | AAAACTCGGTATCTAGCTCA+AGG | - | chr3.4:12043646-12043665 | MS.gene85519:intron | 40.0% |
| ! | AACATATAGGGTTTTGCCTC+TGG | + | chr3.4:12043728-12043747 | None:intergenic | 40.0% |
| ! | AGACGAACAAGTCGATTCAT+TGG | - | chr3.4:12042925-12042944 | MS.gene85519:intron | 40.0% |
| ! | AGTCGATTCATTGGTCAACT+TGG | - | chr3.4:12042934-12042953 | MS.gene85519:intron | 40.0% |
| ! | GCTTTTGCTGCTGATACTAA+TGG | + | chr3.4:12044642-12044661 | None:intergenic | 40.0% |
| ! | GTCGATTCATTGGTCAACTT+GGG | - | chr3.4:12042935-12042954 | MS.gene85519:intron | 40.0% |
| ! | TTGCAGCTCATATTTTCTCC+TGG | + | chr3.4:12043180-12043199 | None:intergenic | 40.0% |
| !! | AACAAGTTCTGTGCTGATTG+TGG | - | chr3.4:12041920-12041939 | MS.gene85519:intron | 40.0% |
| !! | ACTAAGAGCACCTTACAAGT+AGG | + | chr3.4:12042513-12042532 | None:intergenic | 40.0% |
| !! | GATTGGTCTCTCGAATTAGT+CGG | + | chr3.4:12043673-12043692 | None:intergenic | 40.0% |
| !! | GCAACAATTTTTGGATTCCG+AGG | - | chr3.4:12043196-12043215 | MS.gene85519:intron | 40.0% |
| !! | TGAAGTGTCGGTGTTAGATA+CGG | + | chr3.4:12040039-12040058 | None:intergenic | 40.0% |
| !! | TTTGCCTCTGGCTTTAAATG+GGG | + | chr3.4:12043716-12043735 | None:intergenic | 40.0% |
| !!! | AGGAGCGCTCTGATTTTATT+AGG | - | chr3.4:12043038-12043057 | MS.gene85519:CDS | 40.0% |
| !!! | GTTTTGCCTCTGGCTTTAAA+TGG | + | chr3.4:12043718-12043737 | None:intergenic | 40.0% |
| AACCACACTAAGGGACTGTT+TGG | + | chr3.4:12042483-12042502 | None:intergenic | 45.0% | |
| AATCTGACTGTCCTCTAGCA+GGG | - | chr3.4:12043689-12043708 | MS.gene85519:intron | 45.0% | |
| ACAATCTGATGCGTCAAGCA+GGG | - | chr3.4:12041897-12041916 | MS.gene85519:intron | 45.0% | |
| ACAGTGCTACATACAAAGGG+AGG | - | chr3.4:12041341-12041360 | MS.gene85519:CDS | 45.0% | |
| AGAGAGCGATGGATGTTATC+TGG | - | chr3.4:12041715-12041734 | MS.gene85519:CDS | 45.0% | |
| ATACGACACGAACACTGACA+TGG | + | chr3.4:12040700-12040719 | None:intergenic | 45.0% | |
| ATATGAGACACCAACACAGG+TGG | - | chr3.4:12040285-12040304 | MS.gene85519:intron | 45.0% | |
| ATCACTTCCCAACCTTCTCA+AGG | - | chr3.4:12040993-12041012 | MS.gene85519:intron | 45.0% | |
| ATCATGGAGTCAATGCAGCT+TGG | - | chr3.4:12044678-12044697 | MS.gene85519:intron | 45.0% | |
| ATCCAAACAGTCCCTTAGTG+TGG | - | chr3.4:12042478-12042497 | MS.gene85519:intron | 45.0% | |
| ATGGGGAGGAAGAAAGAATG+AGG | + | chr3.4:12039951-12039970 | None:intergenic | 45.0% | |
| CAGCGCATTGTTTGAACATC+AGG | - | chr3.4:12042694-12042713 | MS.gene85519:intron | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | + | chr3.4:12043025-12043044 | None:intergenic | 45.0% | |
| CTCAAAGTCAAAGAGAGCGA+TGG | - | chr3.4:12041704-12041723 | MS.gene85519:CDS | 45.0% | |
| CTTGCGTGGGATGGTATAAA+GGG | + | chr3.4:12043236-12043255 | None:intergenic | 45.0% | |
| CTTGGAAAATGGGTAGCAAG+TGG | - | chr3.4:12044696-12044715 | MS.gene85519:intron | 45.0% | |
| CTTGTGAGACCGGATAATGT+TGG | + | chr3.4:12041777-12041796 | None:intergenic | 45.0% | |
| GATTCATTGGTCAACTTGGG+TGG | - | chr3.4:12042938-12042957 | MS.gene85519:intron | 45.0% | |
| GCAACATCTCTTCTCAACCA+TGG | + | chr3.4:12040494-12040513 | None:intergenic | 45.0% | |
| GCTCTTAGTAACACTGTCCT+CGG | - | chr3.4:12042524-12042543 | MS.gene85519:intron | 45.0% | |
| GGATGAAGTTGTTCTTGCGT+GGG | + | chr3.4:12043249-12043268 | None:intergenic | 45.0% | |
| GGCTATCATTTCGAAACAGC+TGG | - | chr3.4:12043348-12043367 | MS.gene85519:intron | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | - | chr3.4:12041939-12041958 | MS.gene85519:intron | 45.0% | |
| TAAGAGGAGGGATGTTCTCA+GGG | + | chr3.4:12044308-12044327 | None:intergenic | 45.0% | |
| TACGACACGAACACTGACAT+GGG | + | chr3.4:12040699-12040718 | None:intergenic | 45.0% | |
| TAGTCACTACCATATGGTGC+GGG | + | chr3.4:12040897-12040916 | None:intergenic | 45.0% | |
| TATCTATGAAGCACGGACAC+CGG | - | chr3.4:12040087-12040106 | MS.gene85519:CDS | 45.0% | |
| TCACAAGTCGGCGTGTATAA+TGG | - | chr3.4:12041581-12041600 | MS.gene85519:intron | 45.0% | |
| TCGTCTATGAACCACGGATA+CGG | + | chr3.4:12040736-12040755 | None:intergenic | 45.0% | |
| TCTCAGGGATTGACAGCATT+AGG | + | chr3.4:12044293-12044312 | None:intergenic | 45.0% | |
| TCTGCTTACTTCCGATCACT+AGG | - | chr3.4:12041857-12041876 | MS.gene85519:intron | 45.0% | |
| TCTTGCGTGGGATGGTATAA+AGG | + | chr3.4:12043237-12043256 | None:intergenic | 45.0% | |
| TGAAGAAGGGAAAGTGAGAC+AGG | - | chr3.4:12044755-12044774 | MS.gene85519:intron | 45.0% | |
| TGGATGAAGTTGTTCTTGCG+TGG | + | chr3.4:12043250-12043269 | None:intergenic | 45.0% | |
| TGGGGAGGAAGAAAGAATGA+GGG | + | chr3.4:12039950-12039969 | None:intergenic | 45.0% | |
| TTAAGAGGAGGGATGTTCTC+AGG | + | chr3.4:12044309-12044328 | None:intergenic | 45.0% | |
| TTCCAGTATCAGAAACGCGT+CGG | + | chr3.4:12040217-12040236 | None:intergenic | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+CGG | + | chr3.4:12041871-12041890 | None:intergenic | 45.0% | |
| ! | AAAATCAGAGCGCTCCTCAA+TGG | + | chr3.4:12043035-12043054 | None:intergenic | 45.0% |
| ! | TCACTTGGTGACCAAGAGAA+AGG | + | chr3.4:12044135-12044154 | None:intergenic | 45.0% |
| !! | TGAAGCACTGATACAGACAC+TGG | - | chr3.4:12041211-12041230 | MS.gene85519:intron | 45.0% |
| AAACAAAGAGGAGGAGGAGG+AGG | + | chr3.4:12040443-12040462 | None:intergenic | 50.0% | |
| AACAATAGCCCCGCACCATA+TGG | - | chr3.4:12040885-12040904 | MS.gene85519:intron | 50.0% | |
| ACACGGATACTCCTCGGATT+AGG | - | chr3.4:12040560-12040579 | MS.gene85519:intron | 50.0% | |
| ACTGAGACACTCCTAATCCG+AGG | + | chr3.4:12040574-12040593 | None:intergenic | 50.0% | |
| AGTCACTACCATATGGTGCG+GGG | + | chr3.4:12040896-12040915 | None:intergenic | 50.0% | |
| ATCTGACTGTCCTCTAGCAG+GGG | - | chr3.4:12043690-12043709 | MS.gene85519:intron | 50.0% | |
| ATGAACCACGGATACGGACA+TGG | + | chr3.4:12040730-12040749 | None:intergenic | 50.0% | |
| CAATCTGACTGTCCTCTAGC+AGG | - | chr3.4:12043688-12043707 | MS.gene85519:intron | 50.0% | |
| CCAAAACAAAGAGGAGGAGG+AGG | + | chr3.4:12040446-12040465 | None:intergenic | 50.0% | |
| CTGCTAGAGGACAGTCAGAT+TGG | + | chr3.4:12043690-12043709 | None:intergenic | 50.0% | |
| GAAGTTGTTCTTGCGTGGGA+TGG | + | chr3.4:12043245-12043264 | None:intergenic | 50.0% | |
| GACAATCTGATGCGTCAAGC+AGG | - | chr3.4:12041896-12041915 | MS.gene85519:intron | 50.0% | |
| GATCACTAGGTCCACAGGAA+AGG | - | chr3.4:12041870-12041889 | MS.gene85519:intron | 50.0% | |
| GTCAGTGTTCGTGTCGTATC+CGG | - | chr3.4:12040701-12040720 | MS.gene85519:intron | 50.0% | |
| GTTTGAGGAACTGCTCTGAC+TGG | + | chr3.4:12043270-12043289 | None:intergenic | 50.0% | |
| !! | CCTCCTCCTCCTCTTTGTTT+TGG | - | chr3.4:12040443-12040462 | MS.gene85519:CDS | 50.0% |
| ACGGATACGGACATGGACAC+CGG | + | chr3.4:12040723-12040742 | None:intergenic | 55.0% | |
| CACCGACGCGTTTCTGATAC+TGG | - | chr3.4:12040212-12040231 | MS.gene85519:intron | 55.0% | |
| CTTCCGATCACTAGGTCCAC+AGG | - | chr3.4:12041865-12041884 | MS.gene85519:intron | 55.0% | |
| TTAAATGGGGCCCCTGCTAG+AGG | + | chr3.4:12043703-12043722 | None:intergenic | 55.0% | |
| ! | GTCGGTGTCTATGTCGTGTC+TGG | + | chr3.4:12040122-12040141 | None:intergenic | 55.0% |
| CAAAGAGGAGGAGGAGGAGG+AGG | + | chr3.4:12040440-12040459 | None:intergenic | 60.0% | |
| GAGTCGGACACGACACGTGT+TGG | + | chr3.4:12040599-12040618 | None:intergenic | 60.0% | |
| GGTGTCCATGTCCGTATCCG+TGG | - | chr3.4:12040722-12040741 | MS.gene85519:intron | 60.0% | |
| TCGTGTCTGGTGTCCGTGTC+CGG | + | chr3.4:12040109-12040128 | None:intergenic | 60.0% | |
| TGAAGCACGGACACCGGACA+CGG | - | chr3.4:12040093-12040112 | MS.gene85519:CDS | 60.0% | |
| ! | GGGGCCCCATTTAAAGCCAG+AGG | - | chr3.4:12043709-12043728 | MS.gene85519:intron | 60.0% |
| AGAGGAGGAGGAGGAGGAGG+AGG | + | chr3.4:12040437-12040456 | None:intergenic | 65.0% | |
| AGGAGGAGGAGGAGGAGGAG+GGG | + | chr3.4:12040432-12040451 | None:intergenic | 65.0% | |
| GAGGAGGAGGAGGAGGAGGA+GGG | + | chr3.4:12040433-12040452 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGGAGGAGG+AGG | + | chr3.4:12040431-12040450 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12039879 | 12044854 | 12039879 | ID=MS.gene85519 |
| chr3.4 | mRNA | 12039879 | 12044854 | 12039879 | ID=MS.gene85519.t1;Parent=MS.gene85519 |
| chr3.4 | exon | 12044809 | 12044854 | 12044809 | ID=MS.gene85519.t1.exon1;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12044809 | 12044854 | 12044809 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12042997 | 12043086 | 12042997 | ID=MS.gene85519.t1.exon2;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12042997 | 12043086 | 12042997 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12042770 | 12042854 | 12042770 | ID=MS.gene85519.t1.exon3;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12042770 | 12042854 | 12042770 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12041942 | 12042017 | 12041942 | ID=MS.gene85519.t1.exon4;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12041942 | 12042017 | 12041942 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12041674 | 12041837 | 12041674 | ID=MS.gene85519.t1.exon5;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12041674 | 12041837 | 12041674 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12041315 | 12041552 | 12041315 | ID=MS.gene85519.t1.exon6;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12041315 | 12041552 | 12041315 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12040583 | 12040699 | 12040583 | ID=MS.gene85519.t1.exon7;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12040583 | 12040699 | 12040583 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12040401 | 12040496 | 12040401 | ID=MS.gene85519.t1.exon8;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12040401 | 12040496 | 12040401 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| chr3.4 | exon | 12039879 | 12040160 | 12039879 | ID=MS.gene85519.t1.exon9;Parent=MS.gene85519.t1 |
| chr3.4 | CDS | 12039879 | 12040160 | 12039879 | ID=cds.MS.gene85519.t1;Parent=MS.gene85519.t1 |
| Gene Sequence |
| Protein sequence |
