AlfalfaGEDB | MS.gene86336

M. sativa cultivar XinJiangDaYe / MS.gene86336

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86336.t1	RHN76864.1	91.2	431	38	0	23	453	325	755	8.00E-219	769.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86336.t1	Q9LMN7	52.9	418	174	9	40	453	335	733	2.9e-108	393.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86336.t1	A0A396JI89	91.2	431	38	0	23	453	325	755	5.7e-219	769.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049272	MS.gene86336	0.805119	1.56E-49	-1.69E-46
MS.gene049435	MS.gene86336	0.806643	7.45E-50	-1.69E-46
MS.gene049850	MS.gene86336	0.808088	3.68E-50	-1.69E-46
MS.gene049958	MS.gene86336	0.804563	2.03E-49	-1.69E-46
MS.gene050355	MS.gene86336	0.800687	1.28E-48	-1.69E-46
MS.gene050442	MS.gene86336	0.806277	8.90E-50	-1.69E-46
MS.gene051719	MS.gene86336	0.812893	3.37E-51	-1.69E-46
MS.gene051720	MS.gene86336	0.81268	3.75E-51	-1.69E-46
MS.gene052020	MS.gene86336	0.80646	8.14E-50	-1.69E-46
MS.gene052582	MS.gene86336	0.802682	5.00E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 87 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGAAAGGGTGCCAT+TGG	0.510973	1.3:-9737792	None:intergenic
AAAAGTGATGTCTATAGCTT+TGG	0.378017	1.3:+9738106	MS.gene86336:CDS
AAACAAACAAGAGATCAAGG+AGG	0.782860	1.3:+9738276	MS.gene86336:CDS
AAATTCTTTGAGCAGAATGG+TGG	0.605947	1.3:+9737416	MS.gene86336:CDS
AACCAACACTGCCAAAGTGT+CGG	0.629352	1.3:+9737970	MS.gene86336:CDS
AAGACCTAGCATGAAGGAAG+TGG	0.555651	1.3:+9738342	MS.gene86336:CDS
AAGGACAATAGATAGTACTA+TGG	0.469942	1.3:-9737137	None:intergenic
AAGTTATTCAAGAAGGTATG+TGG	0.477258	1.3:+9738245	MS.gene86336:CDS
AATATTGTCACAACACCGAT+GGG	0.597278	1.3:+9737030	MS.gene86336:CDS
AATCGATCAATTCGTTAATG+AGG	0.568759	1.3:+9737673	MS.gene86336:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGATGTCTATAGCTT+TGG	+	chr1.3:9738106-9738125	MS.gene86336:CDS	30.0%
AAGGACAATAGATAGTACTA+TGG	-	chr1.3:9737140-9737159	None:intergenic	30.0%
AATCGATCAATTCGTTAATG+AGG	+	chr1.3:9737673-9737692	MS.gene86336:CDS	30.0%
ACAAACTCATAAACCAACAA+AGG	-	chr1.3:9737770-9737789	None:intergenic	30.0%
AGAAAACAAACAAGAGATCA+AGG	+	chr1.3:9738273-9738292	MS.gene86336:CDS	30.0%
AGTGATAACATTCTCTTAGA+TGG	+	chr1.3:9737947-9737966	MS.gene86336:CDS	30.0%
ATAGTACTATCTATTGTCCT+TGG	+	chr1.3:9737139-9737158	MS.gene86336:CDS	30.0%
CATTAACGAATTGATCGATT+TGG	-	chr1.3:9737673-9737692	None:intergenic	30.0%
TGTGTGTATAAAACCAGAAA+GGG	-	chr1.3:9737804-9737823	None:intergenic	30.0%
AAACAAACAAGAGATCAAGG+AGG	+	chr1.3:9738276-9738295	MS.gene86336:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	9737029	9738561	9737029	ID=MS.gene86336
chr1.3	mRNA	9737029	9738561	9737029	ID=MS.gene86336.t1;Parent=MS.gene86336
chr1.3	exon	9737029	9737160	9737029	ID=MS.gene86336.t1.exon1;Parent=MS.gene86336.t1
chr1.3	CDS	9737029	9737160	9737029	ID=cds.MS.gene86336.t1;Parent=MS.gene86336.t1
chr1.3	exon	9737330	9738561	9737330	ID=MS.gene86336.t1.exon2;Parent=MS.gene86336.t1
chr1.3	CDS	9737330	9738561	9737330	ID=cds.MS.gene86336.t1;Parent=MS.gene86336.t1

Gene Sequence

>MS.gene86336

CAATATTGTCACAACACCGATGGGAGTCACACATGTTTGTGTCAAAGGGGTATTCAGGAGATGGAAAAAAGGAAGGAGGGTGCCAACTCCTTGATAAAAATAAAAATTCCATAGTACTATCTATTGTCCTTGGTAAGCAACTAAGCAATACCCTAGTGATTTTGTTCAAATTCTTTTTCTTTCTTCAATTTTTCAATTTTGTTTATAATCCTTACATTCATGGTCATTCACTCTGATGTTGATATTAATTACTTTAGTGAACTATTCATAATATTATTTTAATGATATATTTTGAGTGCAGGAGTAGGAGTAACATTTATTCTTCTCTTTTTGGGGACATTCTCGTACTTAATGTATCATAAAAGGAAATTCATCAAATTGAGAGAGAAATTCTTTGAGCAGAATGGTGGTTTGATTTTGAAACAAAAACTCTCAACAAGAGAAGACTCCTCCTATCAAACAAGACAAGACTCCTCAACTCAAAGTGCTAAAATATTCACACAAGATCAGCTAAACAAGGCAACCAAAAACTTCGACGAGAGTTTAATCATTGGCAAAGGTGGTTTTGGTACCGTTTTCAAAGGATTTCTAGATGATAAAAGAATTGTTGCTATCAAAAAATCAAAAATAATAGATAGAAGCCAAATCGATCAATTCGTTAATGAGGTGGTTGTTCTCTCTCAAATAAATCATAGGAATGTTGTCAAACTCTTGGGATGTTGTTTAGAGACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTACCAATGGCACCCTTTCTGGTTTTATACACACACACGGTATTAAGGTGAATAATGAAACATGGAAAACTCGTCTTAAGATAGCCGCAGAGGTAGCAGAAGCTTTGTCGTATCTACATTCATATGCCTCAACACCCATCATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTGTCGGATTTTGGAGCTTCAAGATTGGTTCCAATCGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACGATTGGATACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTGTGGAGTTGCTAACAGGGGAGAAGCCTTTTAGTTTTGGTAGGCCGGAAGAGAGAAGAAGTCTTGCTATGCACTTTCTGTCTTGCATGAAAAAGGATAATGTGTTTGAAGTTATTCAAGAAGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTGGCTATTCTTGCGGCGAAGTGTTTGAGACTTAGAGGGGAAGAAAGACCTAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGAATAAGCACTCTTGGATCAATGATGACTCAAATGTAGAGAAGAGTCCGTACTTGCTTCATGAATCATCATCTAGCTTTTATGAACCTGGTGATAGCAGCACACATGGAGATATGGGATATGACAGCTTGAAAGACCATGTACTGATAGCATTGGATGATGGCAGATGA

Protein sequence

>MS.gene86336.t1

QYCHNTDGSHTCLCQRGIQEMEKRKEGANSLIKIKIPUYYLLSLEUEUHLFFSFWGHSRTUCIIKGNSSNUERNSLSRMVVUFUNKNSQQEKTPPIKQDKTPQLKVLKYSHKISUTRQPKTSTRVUSLAKVVLVPFSKDFUMIKELLLSKNQKUUIEAKSINSLMRWLFSLKUIIGMLSNSWDVVURQKFLCWFMSLLPMAPFLVLYTHTVLRUIMKHGKLVLRUPQRUQKLCRIYIHMPQHPSSIEMSRVITFSUMEPTLPKCRILELQDWFQSIKLKUPQWCKERLDTUIQSICKQANULKKVMSIALEUFLWSCUQGRSLLVLVGRKREEVLLCTFCLAUKRIMCLKLFKKVCGMKKTNKRSRRWLFLRRSVUDLEGKKDLAURKWLWNWREUGUUISTLGSMMTQMURRVRTCFMNHHLAFMNLVIAAHMEIWDMTAUKTMYUUHWMMAD