Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86336.t1 | RHN76864.1 | 91.2 | 431 | 38 | 0 | 23 | 453 | 325 | 755 | 8.00E-219 | 769.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86336.t1 | Q9LMN7 | 52.9 | 418 | 174 | 9 | 40 | 453 | 335 | 733 | 2.9e-108 | 393.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86336.t1 | A0A396JI89 | 91.2 | 431 | 38 | 0 | 23 | 453 | 325 | 755 | 5.7e-219 | 769.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene86336 | 0.805119 | 1.56E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene86336 | 0.806643 | 7.45E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene86336 | 0.808088 | 3.68E-50 | -1.69E-46 |
| MS.gene049958 | MS.gene86336 | 0.804563 | 2.03E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene86336 | 0.800687 | 1.28E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene86336 | 0.806277 | 8.90E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene86336 | 0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene86336 | 0.81268 | 3.75E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene86336 | 0.80646 | 8.14E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene86336 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene86336 | 0.806312 | 8.74E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene86336 | 0.801713 | 7.91E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene86336 | 0.809925 | 1.49E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene86336 | 0.802159 | 6.40E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene86336 | -0.814134 | 1.80E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene86336 | 0.820259 | 7.54E-53 | -1.69E-46 |
| MS.gene05468 | MS.gene86336 | 0.825315 | 5.01E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene86336 | 0.81545 | 9.19E-52 | -1.69E-46 |
| MS.gene054801 | MS.gene86336 | 0.815921 | 7.21E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene86336 | 0.814313 | 1.64E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene86336 | 0.824135 | 9.51E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene86336 | 0.803294 | 3.73E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene86336 | 0.825129 | 5.55E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene86336 | 0.806818 | 6.84E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 87 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACCAATGGCACCCTTTC+TGG | 0.104995 | 1.3:+9737788 | MS.gene86336:CDS |
| CTTTCTGTCTTGCATGAAAA+AGG | 0.205396 | 1.3:+9738210 | MS.gene86336:CDS |
| ACTGCCAAAGTGTCGGATTT+TGG | 0.212446 | 1.3:+9737977 | MS.gene86336:CDS |
| CGTACTTAATGTATCATAAA+AGG | 0.252427 | 1.3:+9737372 | MS.gene86336:CDS |
| TATACACACACACGGTATTA+AGG | 0.278330 | 1.3:+9737814 | MS.gene86336:CDS |
| ATCATTGGCAAAGGTGGTTT+TGG | 0.281387 | 1.3:+9737575 | MS.gene86336:CDS |
| GCGAAGTGTTTGAGACTTAG+AGG | 0.288864 | 1.3:+9738313 | MS.gene86336:CDS |
| TTTGTGTCAAAGGGGTATTC+AGG | 0.299946 | 1.3:+9737064 | MS.gene86336:CDS |
| GGAGTCTTGTCTTGTTTGAT+AGG | 0.329928 | 1.3:-9737480 | None:intergenic |
| GTTCTTGTGGAGTTGCTAAC+AGG | 0.332674 | 1.3:+9738133 | MS.gene86336:CDS |
| TCCGGCCTACCAAAACTAAA+AGG | 0.333262 | 1.3:-9738163 | None:intergenic |
| CATTAACGAATTGATCGATT+TGG | 0.338144 | 1.3:-9737670 | None:intergenic |
| GCAAGACTTCTTCTCTCTTC+CGG | 0.340790 | 1.3:-9738181 | None:intergenic |
| AGTGATAACATTCTCTTAGA+TGG | 0.368122 | 1.3:+9737947 | MS.gene86336:CDS |
| AAAAGTGATGTCTATAGCTT+TGG | 0.378017 | 1.3:+9738106 | MS.gene86336:CDS |
| GAAGGAAGTGGCTATGGAAT+TGG | 0.382948 | 1.3:+9738354 | MS.gene86336:CDS |
| TAGCAGCACACATGGAGATA+TGG | 0.388227 | 1.3:+9738486 | MS.gene86336:CDS |
| TATCACTCTTGACATCTCTA+TGG | 0.394898 | 1.3:-9737931 | None:intergenic |
| AGAGACAGAAGTTCCTTTGT+TGG | 0.398274 | 1.3:+9737754 | MS.gene86336:CDS |
| TAGGAATGTTGTCAAACTCT+TGG | 0.419987 | 1.3:+9737721 | MS.gene86336:CDS |
| GAGAAATTCTTTGAGCAGAA+TGG | 0.437284 | 1.3:+9737413 | MS.gene86336:CDS |
| AGCAGCACACATGGAGATAT+GGG | 0.447628 | 1.3:+9738487 | MS.gene86336:CDS |
| TTCTCTCTCAAATAAATCAT+AGG | 0.453119 | 1.3:+9737702 | MS.gene86336:CDS |
| GCTACTTCAGTTTGATCGAT+TGG | 0.453914 | 1.3:-9738016 | None:intergenic |
| GGTTAATGAATAAGCACTCT+TGG | 0.462005 | 1.3:+9738386 | MS.gene86336:CDS |
| AGGAATGTTGTCAAACTCTT+GGG | 0.465439 | 1.3:+9737722 | MS.gene86336:CDS |
| GTCACACATGTTTGTGTCAA+AGG | 0.467061 | 1.3:+9737054 | MS.gene86336:CDS |
| AAGGACAATAGATAGTACTA+TGG | 0.469942 | 1.3:-9737137 | None:intergenic |
| TCACACATGTTTGTGTCAAA+GGG | 0.470258 | 1.3:+9737055 | MS.gene86336:CDS |
| TTCGACGAGAGTTTAATCAT+TGG | 0.475468 | 1.3:+9737560 | MS.gene86336:CDS |
| AAGTTATTCAAGAAGGTATG+TGG | 0.477258 | 1.3:+9738245 | MS.gene86336:CDS |
| ATCTAGAAATCCTTTGAAAA+CGG | 0.481519 | 1.3:-9737600 | None:intergenic |
| ATCCGACACTTTGGCAGTGT+TGG | 0.482167 | 1.3:-9737972 | None:intergenic |
| GTTTATGAGTTTGTTACCAA+TGG | 0.483247 | 1.3:+9737776 | MS.gene86336:CDS |
| ATAGTACTATCTATTGTCCT+TGG | 0.484003 | 1.3:+9737139 | MS.gene86336:CDS |
| TGGCTTGTTTGCATATACTC+TGG | 0.486208 | 1.3:-9738073 | None:intergenic |
| CCATGTGTGCTGCTATCACC+AGG | 0.493346 | 1.3:-9738478 | None:intergenic |
| ATAGCCACTTCCTTCATGCT+AGG | 0.493412 | 1.3:-9738346 | None:intergenic |
| AGCTCCAAAATCCGACACTT+TGG | 0.493974 | 1.3:-9737981 | None:intergenic |
| GGAAGTGGCTATGGAATTGG+AGG | 0.494416 | 1.3:+9738357 | MS.gene86336:CDS |
| CTTGACATCTCTATGGATGA+TGG | 0.495181 | 1.3:-9737924 | None:intergenic |
| GTGTTTGAAGTTATTCAAGA+AGG | 0.506140 | 1.3:+9738238 | MS.gene86336:CDS |
| TAGCATGAAGGAAGTGGCTA+TGG | 0.509305 | 1.3:+9738348 | MS.gene86336:CDS |
| TAGCTTTGGAGTAGTTCTTG+TGG | 0.510014 | 1.3:+9738120 | MS.gene86336:CDS |
| AAAACCAGAAAGGGTGCCAT+TGG | 0.510973 | 1.3:-9737792 | None:intergenic |
| AGAAAACAAACAAGAGATCA+AGG | 0.514929 | 1.3:+9738273 | MS.gene86336:CDS |
| GTCTTGTCTTGTTTGATAGG+AGG | 0.517631 | 1.3:-9737477 | None:intergenic |
| CATCCAATGCTATCAGTACA+TGG | 0.530713 | 1.3:-9738528 | None:intergenic |
| ACAATGGTGCAAGGAACGAT+TGG | 0.533740 | 1.3:+9738040 | MS.gene86336:CDS |
| CCTGGTGATAGCAGCACACA+TGG | 0.534955 | 1.3:+9738478 | MS.gene86336:CDS |
| AGTTTAATCATTGGCAAAGG+TGG | 0.544394 | 1.3:+9737569 | MS.gene86336:CDS |
| CTATGGAATTGGAGGGAATG+AGG | 0.544662 | 1.3:+9738365 | MS.gene86336:CDS |
| GATGATTCATGAAGCAAGTA+CGG | 0.548003 | 1.3:-9738439 | None:intergenic |
| CGAAGTGTTTGAGACTTAGA+GGG | 0.548113 | 1.3:+9738314 | MS.gene86336:CDS |
| TCAAAGGGGTATTCAGGAGA+TGG | 0.549506 | 1.3:+9737070 | MS.gene86336:CDS |
| AAGACCTAGCATGAAGGAAG+TGG | 0.555651 | 1.3:+9738342 | MS.gene86336:CDS |
| TTGACATCTCTATGGATGAT+GGG | 0.561992 | 1.3:-9737923 | None:intergenic |
| CGATCAATTCGTTAATGAGG+TGG | 0.565139 | 1.3:+9737676 | MS.gene86336:CDS |
| AATCGATCAATTCGTTAATG+AGG | 0.568759 | 1.3:+9737673 | MS.gene86336:CDS |
| TTCTTGTGGAGTTGCTAACA+GGG | 0.581278 | 1.3:+9738134 | MS.gene86336:CDS |
| CAATATTGTCACAACACCGA+TGG | 0.589302 | 1.3:+9737029 | MS.gene86336:CDS |
| CACACAAGATCAGCTAAACA+AGG | 0.593431 | 1.3:+9737526 | MS.gene86336:CDS |
| CAAACAAGAGATCAAGGAGG+TGG | 0.594622 | 1.3:+9738279 | MS.gene86336:CDS |
| AATATTGTCACAACACCGAT+GGG | 0.597278 | 1.3:+9737030 | MS.gene86336:CDS |
| AATCGTTCCTTGCACCATTG+TGG | 0.598064 | 1.3:-9738038 | None:intergenic |
| CAAACATGTGTGACTCCCAT+CGG | 0.599700 | 1.3:-9737045 | None:intergenic |
| AGACCATGTACTGATAGCAT+TGG | 0.600481 | 1.3:+9738525 | MS.gene86336:CDS |
| TTAAGGTGAATAATGAAACA+TGG | 0.601304 | 1.3:+9737831 | MS.gene86336:CDS |
| GAGAGTTTAATCATTGGCAA+AGG | 0.602803 | 1.3:+9737566 | MS.gene86336:CDS |
| AAATTCTTTGAGCAGAATGG+TGG | 0.605947 | 1.3:+9737416 | MS.gene86336:CDS |
| TGTGTGTATAAAACCAGAAA+GGG | 0.607206 | 1.3:-9737801 | None:intergenic |
| CAAGGAGGTGGCTATTCTTG+CGG | 0.607853 | 1.3:+9738291 | MS.gene86336:CDS |
| GTGTGTGTATAAAACCAGAA+AGG | 0.608460 | 1.3:-9737802 | None:intergenic |
| ACAAACTCATAAACCAACAA+AGG | 0.614769 | 1.3:-9737767 | None:intergenic |
| GAAGTAGCCACAATGGTGCA+AGG | 0.619873 | 1.3:+9738031 | MS.gene86336:CDS |
| GGAAGAAAGACCTAGCATGA+AGG | 0.624359 | 1.3:+9738336 | MS.gene86336:CDS |
| AACCAACACTGCCAAAGTGT+CGG | 0.629352 | 1.3:+9737970 | MS.gene86336:CDS |
| GTACTGATAGCATTGGATGA+TGG | 0.631590 | 1.3:+9738532 | MS.gene86336:CDS |
| TCTATGGATGATGGGTGTTG+AGG | 0.640523 | 1.3:-9737915 | None:intergenic |
| GAAGTGGCTATGGAATTGGA+GGG | 0.681874 | 1.3:+9738358 | MS.gene86336:CDS |
| TCAAACTGAAGTAGCCACAA+TGG | 0.683818 | 1.3:+9738024 | MS.gene86336:CDS |
| CACACATGTTTGTGTCAAAG+GGG | 0.687593 | 1.3:+9737056 | MS.gene86336:CDS |
| TCGTCTTAAGATAGCCGCAG+AGG | 0.691904 | 1.3:+9737859 | MS.gene86336:CDS |
| TCTTGTGGAGTTGCTAACAG+GGG | 0.699726 | 1.3:+9738135 | MS.gene86336:CDS |
| GAAGTGTTTGAGACTTAGAG+GGG | 0.703558 | 1.3:+9738315 | MS.gene86336:CDS |
| CAAAGCTTCTGCTACCTCTG+CGG | 0.730306 | 1.3:-9737873 | None:intergenic |
| AAACAAACAAGAGATCAAGG+AGG | 0.782860 | 1.3:+9738276 | MS.gene86336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGAATTTTTATTTTTATCA+AGG | - | chr1.3:9737120-9737139 | None:intergenic | 15.0% |
| !!! | AACATTTATTCTTCTCTTTT+TGG | + | chr1.3:9737340-9737359 | MS.gene86336:CDS | 20.0% |
| !!! | ACATTTATTCTTCTCTTTTT+GGG | + | chr1.3:9737341-9737360 | MS.gene86336:CDS | 20.0% |
| !!! | TTTTATTTTTATCAAGGAGT+TGG | - | chr1.3:9737114-9737133 | None:intergenic | 20.0% |
| ! | AGAATTTGAACAAAATCACT+AGG | - | chr1.3:9737183-9737202 | None:intergenic | 25.0% |
| ! | CGTACTTAATGTATCATAAA+AGG | + | chr1.3:9737372-9737391 | MS.gene86336:CDS | 25.0% |
| ! | GAATTTGAACAAAATCACTA+GGG | - | chr1.3:9737182-9737201 | None:intergenic | 25.0% |
| ! | GTTTATAATCCTTACATTCA+TGG | + | chr1.3:9737229-9737248 | MS.gene86336:intron | 25.0% |
| ! | TTAAGGTGAATAATGAAACA+TGG | + | chr1.3:9737831-9737850 | MS.gene86336:CDS | 25.0% |
| ! | TTCTCTCTCAAATAAATCAT+AGG | + | chr1.3:9737702-9737721 | MS.gene86336:CDS | 25.0% |
| !! | ATCTAGAAATCCTTTGAAAA+CGG | - | chr1.3:9737603-9737622 | None:intergenic | 25.0% |
| !! | CATTTATTCTTCTCTTTTTG+GGG | + | chr1.3:9737342-9737361 | MS.gene86336:CDS | 25.0% |
| !!! | TAATGATATATTTTGAGTGC+AGG | + | chr1.3:9737308-9737327 | MS.gene86336:intron | 25.0% |
| AAAAGTGATGTCTATAGCTT+TGG | + | chr1.3:9738106-9738125 | MS.gene86336:CDS | 30.0% | |
| AAGGACAATAGATAGTACTA+TGG | - | chr1.3:9737140-9737159 | None:intergenic | 30.0% | |
| AATCGATCAATTCGTTAATG+AGG | + | chr1.3:9737673-9737692 | MS.gene86336:CDS | 30.0% | |
| ACAAACTCATAAACCAACAA+AGG | - | chr1.3:9737770-9737789 | None:intergenic | 30.0% | |
| AGAAAACAAACAAGAGATCA+AGG | + | chr1.3:9738273-9738292 | MS.gene86336:CDS | 30.0% | |
| AGTGATAACATTCTCTTAGA+TGG | + | chr1.3:9737947-9737966 | MS.gene86336:CDS | 30.0% | |
| ATAGTACTATCTATTGTCCT+TGG | + | chr1.3:9737139-9737158 | MS.gene86336:CDS | 30.0% | |
| CATTAACGAATTGATCGATT+TGG | - | chr1.3:9737673-9737692 | None:intergenic | 30.0% | |
| TGTGTGTATAAAACCAGAAA+GGG | - | chr1.3:9737804-9737823 | None:intergenic | 30.0% | |
| ! | AAGTTATTCAAGAAGGTATG+TGG | + | chr1.3:9738245-9738264 | MS.gene86336:CDS | 30.0% |
| ! | GTGTTTGAAGTTATTCAAGA+AGG | + | chr1.3:9738238-9738257 | MS.gene86336:CDS | 30.0% |
| !! | GTTTATGAGTTTGTTACCAA+TGG | + | chr1.3:9737776-9737795 | MS.gene86336:CDS | 30.0% |
| !!! | CATCACTTTTTTCAGTCAAT+TGG | - | chr1.3:9738096-9738115 | None:intergenic | 30.0% |
| !!! | TATTTTAGCACTTTGAGTTG+AGG | - | chr1.3:9737504-9737523 | None:intergenic | 30.0% |
| AAACAAACAAGAGATCAAGG+AGG | + | chr1.3:9738276-9738295 | MS.gene86336:CDS | 35.0% | |
| AAATTCTTTGAGCAGAATGG+TGG | + | chr1.3:9737416-9737435 | MS.gene86336:CDS | 35.0% | |
| AATATTGTCACAACACCGAT+GGG | + | chr1.3:9737030-9737049 | MS.gene86336:CDS | 35.0% | |
| AGGAATGTTGTCAAACTCTT+GGG | + | chr1.3:9737722-9737741 | MS.gene86336:CDS | 35.0% | |
| AGTGAATGACCATGAATGTA+AGG | - | chr1.3:9737241-9737260 | None:intergenic | 35.0% | |
| AGTTTAATCATTGGCAAAGG+TGG | + | chr1.3:9737569-9737588 | MS.gene86336:CDS | 35.0% | |
| CTTTCTGTCTTGCATGAAAA+AGG | + | chr1.3:9738210-9738229 | MS.gene86336:CDS | 35.0% | |
| GAGAAATTCTTTGAGCAGAA+TGG | + | chr1.3:9737413-9737432 | MS.gene86336:CDS | 35.0% | |
| GAGAGTTTAATCATTGGCAA+AGG | + | chr1.3:9737566-9737585 | MS.gene86336:CDS | 35.0% | |
| GATGATTCATGAAGCAAGTA+CGG | - | chr1.3:9738442-9738461 | None:intergenic | 35.0% | |
| GGTTAATGAATAAGCACTCT+TGG | + | chr1.3:9738386-9738405 | MS.gene86336:CDS | 35.0% | |
| GTATTCAGGAGATGGAAAAA+AGG | + | chr1.3:9737078-9737097 | MS.gene86336:CDS | 35.0% | |
| GTGTGTGTATAAAACCAGAA+AGG | - | chr1.3:9737805-9737824 | None:intergenic | 35.0% | |
| TAGGAATGTTGTCAAACTCT+TGG | + | chr1.3:9737721-9737740 | MS.gene86336:CDS | 35.0% | |
| TATACACACACACGGTATTA+AGG | + | chr1.3:9737814-9737833 | MS.gene86336:CDS | 35.0% | |
| TATCACTCTTGACATCTCTA+TGG | - | chr1.3:9737934-9737953 | None:intergenic | 35.0% | |
| TATTGCTTAGTTGCTTACCA+AGG | - | chr1.3:9737159-9737178 | None:intergenic | 35.0% | |
| TCACACATGTTTGTGTCAAA+GGG | + | chr1.3:9737055-9737074 | MS.gene86336:CDS | 35.0% | |
| TTCGACGAGAGTTTAATCAT+TGG | + | chr1.3:9737560-9737579 | MS.gene86336:CDS | 35.0% | |
| TTGACATCTCTATGGATGAT+GGG | - | chr1.3:9737926-9737945 | None:intergenic | 35.0% | |
| ! | TAAACTCTCGTCGAAGTTTT+TGG | - | chr1.3:9737555-9737574 | None:intergenic | 35.0% |
| !! | TATATTTTGAGTGCAGGAGT+AGG | + | chr1.3:9737314-9737333 | MS.gene86336:intron | 35.0% |
| !!! | AGAAGCCTTTTAGTTTTGGT+AGG | + | chr1.3:9738158-9738177 | MS.gene86336:CDS | 35.0% |
| !!! | TCATCTAGCTTTTATGAACC+TGG | + | chr1.3:9738460-9738479 | MS.gene86336:CDS | 35.0% |
| !!! | TCTGGTTTTATACACACACA+CGG | + | chr1.3:9737806-9737825 | MS.gene86336:CDS | 35.0% |
| AGAGACAGAAGTTCCTTTGT+TGG | + | chr1.3:9737754-9737773 | MS.gene86336:CDS | 40.0% | |
| CAATATTGTCACAACACCGA+TGG | + | chr1.3:9737029-9737048 | MS.gene86336:CDS | 40.0% | |
| CACACAAGATCAGCTAAACA+AGG | + | chr1.3:9737526-9737545 | MS.gene86336:CDS | 40.0% | |
| CACACATGTTTGTGTCAAAG+GGG | + | chr1.3:9737056-9737075 | MS.gene86336:CDS | 40.0% | |
| CATCCAATGCTATCAGTACA+TGG | - | chr1.3:9738531-9738550 | None:intergenic | 40.0% | |
| CGATCAATTCGTTAATGAGG+TGG | + | chr1.3:9737676-9737695 | MS.gene86336:CDS | 40.0% | |
| CTTGACATCTCTATGGATGA+TGG | - | chr1.3:9737927-9737946 | None:intergenic | 40.0% | |
| GAGATGGAAAAAAGGAAGGA+GGG | + | chr1.3:9737086-9737105 | MS.gene86336:CDS | 40.0% | |
| GCTACTTCAGTTTGATCGAT+TGG | - | chr1.3:9738019-9738038 | None:intergenic | 40.0% | |
| GTCACACATGTTTGTGTCAA+AGG | + | chr1.3:9737054-9737073 | MS.gene86336:CDS | 40.0% | |
| TCAAACTGAAGTAGCCACAA+TGG | + | chr1.3:9738024-9738043 | MS.gene86336:CDS | 40.0% | |
| TCAGGAGATGGAAAAAAGGA+AGG | + | chr1.3:9737082-9737101 | MS.gene86336:CDS | 40.0% | |
| TTCTTGTGGAGTTGCTAACA+GGG | + | chr1.3:9738134-9738153 | MS.gene86336:CDS | 40.0% | |
| ! | AGACCATGTACTGATAGCAT+TGG | + | chr1.3:9738525-9738544 | MS.gene86336:CDS | 40.0% |
| ! | ATCATTGGCAAAGGTGGTTT+TGG | + | chr1.3:9737575-9737594 | MS.gene86336:CDS | 40.0% |
| ! | CGAAGTGTTTGAGACTTAGA+GGG | + | chr1.3:9738314-9738333 | MS.gene86336:CDS | 40.0% |
| ! | GAAGTGTTTGAGACTTAGAG+GGG | + | chr1.3:9738315-9738334 | MS.gene86336:CDS | 40.0% |
| ! | GTACTGATAGCATTGGATGA+TGG | + | chr1.3:9738532-9738551 | MS.gene86336:CDS | 40.0% |
| !! | GGAGTCTTGTCTTGTTTGAT+AGG | - | chr1.3:9737483-9737502 | None:intergenic | 40.0% |
| !! | GGTTTTGGTACCGTTTTCAA+AGG | + | chr1.3:9737590-9737609 | MS.gene86336:CDS | 40.0% |
| !! | GTCTTGTCTTGTTTGATAGG+AGG | - | chr1.3:9737480-9737499 | None:intergenic | 40.0% |
| !! | TAGCTTTGGAGTAGTTCTTG+TGG | + | chr1.3:9738120-9738139 | MS.gene86336:CDS | 40.0% |
| !! | TGGCTTGTTTGCATATACTC+TGG | - | chr1.3:9738076-9738095 | None:intergenic | 40.0% |
| !! | TTTGTGTCAAAGGGGTATTC+AGG | + | chr1.3:9737064-9737083 | MS.gene86336:CDS | 40.0% |
| !!! | GGATTTTGGAGCTTCAAGAT+TGG | + | chr1.3:9737991-9738010 | MS.gene86336:CDS | 40.0% |
| AACCAACACTGCCAAAGTGT+CGG | + | chr1.3:9737970-9737989 | MS.gene86336:CDS | 45.0% | |
| AAGACCTAGCATGAAGGAAG+TGG | + | chr1.3:9738342-9738361 | MS.gene86336:CDS | 45.0% | |
| AATCGTTCCTTGCACCATTG+TGG | - | chr1.3:9738041-9738060 | None:intergenic | 45.0% | |
| ACAATGGTGCAAGGAACGAT+TGG | + | chr1.3:9738040-9738059 | MS.gene86336:CDS | 45.0% | |
| AGCAGCACACATGGAGATAT+GGG | + | chr1.3:9738487-9738506 | MS.gene86336:CDS | 45.0% | |
| AGCTCCAAAATCCGACACTT+TGG | - | chr1.3:9737984-9738003 | None:intergenic | 45.0% | |
| ATAGCCACTTCCTTCATGCT+AGG | - | chr1.3:9738349-9738368 | None:intergenic | 45.0% | |
| CAAACAAGAGATCAAGGAGG+TGG | + | chr1.3:9738279-9738298 | MS.gene86336:CDS | 45.0% | |
| CAAACATGTGTGACTCCCAT+CGG | - | chr1.3:9737048-9737067 | None:intergenic | 45.0% | |
| CTATGGAATTGGAGGGAATG+AGG | + | chr1.3:9738365-9738384 | MS.gene86336:CDS | 45.0% | |
| GAAGGAAGTGGCTATGGAAT+TGG | + | chr1.3:9738354-9738373 | MS.gene86336:CDS | 45.0% | |
| GAAGTGGCTATGGAATTGGA+GGG | + | chr1.3:9738358-9738377 | MS.gene86336:CDS | 45.0% | |
| GCAAGACTTCTTCTCTCTTC+CGG | - | chr1.3:9738184-9738203 | None:intergenic | 45.0% | |
| GGAAGAAAGACCTAGCATGA+AGG | + | chr1.3:9738336-9738355 | MS.gene86336:CDS | 45.0% | |
| GGAGATGGAAAAAAGGAAGG+AGG | + | chr1.3:9737085-9737104 | MS.gene86336:CDS | 45.0% | |
| GTTCTTGTGGAGTTGCTAAC+AGG | + | chr1.3:9738133-9738152 | MS.gene86336:CDS | 45.0% | |
| TAGCAGCACACATGGAGATA+TGG | + | chr1.3:9738486-9738505 | MS.gene86336:CDS | 45.0% | |
| TAGCATGAAGGAAGTGGCTA+TGG | + | chr1.3:9738348-9738367 | MS.gene86336:CDS | 45.0% | |
| TCCGGCCTACCAAAACTAAA+AGG | - | chr1.3:9738166-9738185 | None:intergenic | 45.0% | |
| TCTTGTGGAGTTGCTAACAG+GGG | + | chr1.3:9738135-9738154 | MS.gene86336:CDS | 45.0% | |
| ! | GCGAAGTGTTTGAGACTTAG+AGG | + | chr1.3:9738313-9738332 | MS.gene86336:CDS | 45.0% |
| !! | AAAACCAGAAAGGGTGCCAT+TGG | - | chr1.3:9737795-9737814 | None:intergenic | 45.0% |
| !! | TCAAAGGGGTATTCAGGAGA+TGG | + | chr1.3:9737070-9737089 | MS.gene86336:CDS | 45.0% |
| !! | TCTATGGATGATGGGTGTTG+AGG | - | chr1.3:9737918-9737937 | None:intergenic | 45.0% |
| !!! | ACTGCCAAAGTGTCGGATTT+TGG | + | chr1.3:9737977-9737996 | MS.gene86336:CDS | 45.0% |
| !!! | GCCTTTTAGTTTTGGTAGGC+CGG | + | chr1.3:9738162-9738181 | MS.gene86336:CDS | 45.0% |
| !!! | GGGGAGAAGCCTTTTAGTTT+TGG | + | chr1.3:9738154-9738173 | MS.gene86336:CDS | 45.0% |
| ATCCGACACTTTGGCAGTGT+TGG | - | chr1.3:9737975-9737994 | None:intergenic | 50.0% | |
| CAAAGCTTCTGCTACCTCTG+CGG | - | chr1.3:9737876-9737895 | None:intergenic | 50.0% | |
| CAAGGAGGTGGCTATTCTTG+CGG | + | chr1.3:9738291-9738310 | MS.gene86336:CDS | 50.0% | |
| GAAGTAGCCACAATGGTGCA+AGG | + | chr1.3:9738031-9738050 | MS.gene86336:CDS | 50.0% | |
| GGAAGTGGCTATGGAATTGG+AGG | + | chr1.3:9738357-9738376 | MS.gene86336:CDS | 50.0% | |
| GTTACCAATGGCACCCTTTC+TGG | + | chr1.3:9737788-9737807 | MS.gene86336:CDS | 50.0% | |
| TCGTCTTAAGATAGCCGCAG+AGG | + | chr1.3:9737859-9737878 | MS.gene86336:CDS | 50.0% | |
| CCTGGTGATAGCAGCACACA+TGG | + | chr1.3:9738478-9738497 | MS.gene86336:CDS | 55.0% | |
| ! | CCATGTGTGCTGCTATCACC+AGG | - | chr1.3:9738481-9738500 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9737029 | 9738561 | 9737029 | ID=MS.gene86336 |
| chr1.3 | mRNA | 9737029 | 9738561 | 9737029 | ID=MS.gene86336.t1;Parent=MS.gene86336 |
| chr1.3 | exon | 9737029 | 9737160 | 9737029 | ID=MS.gene86336.t1.exon1;Parent=MS.gene86336.t1 |
| chr1.3 | CDS | 9737029 | 9737160 | 9737029 | ID=cds.MS.gene86336.t1;Parent=MS.gene86336.t1 |
| chr1.3 | exon | 9737330 | 9738561 | 9737330 | ID=MS.gene86336.t1.exon2;Parent=MS.gene86336.t1 |
| chr1.3 | CDS | 9737330 | 9738561 | 9737330 | ID=cds.MS.gene86336.t1;Parent=MS.gene86336.t1 |
| Gene Sequence |
| Protein sequence |
