AlfalfaGEDB | MS.gene86799

M. sativa cultivar XinJiangDaYe / MS.gene86799

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86799.t1	KEH42885.1	95.1	266	8	4	1	266	9	269	2.60E-129	471.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86799.t1	Q43385	42.1	259	99	13	29	267	67	294	1.2e-34	148.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86799.t1	A0A072VMR5	95.1	266	8	4	1	266	9	269	1.9e-129	471.5

TFs/TRs:

Gene ID	Type	Classification
MS.gene86799.t1	TF	C2C2-Dof

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene86799	0.812994	3.20E-51	-1.69E-46
MS.gene049350	MS.gene86799	0.82895	6.76E-55	-1.69E-46
MS.gene049711	MS.gene86799	0.814076	1.85E-51	-1.69E-46
MS.gene049807	MS.gene86799	0.837565	4.82E-57	-1.69E-46
MS.gene050258	MS.gene86799	0.809999	1.43E-50	-1.69E-46
MS.gene051201	MS.gene86799	0.812793	3.55E-51	-1.69E-46
MS.gene051279	MS.gene86799	0.825393	4.80E-54	-1.69E-46
MS.gene052155	MS.gene86799	-0.806672	7.34E-50	-1.69E-46
MS.gene052307	MS.gene86799	0.815436	9.26E-52	-1.69E-46
MS.gene052514	MS.gene86799	0.812557	3.99E-51	-1.69E-46
MS.gene052516	MS.gene86799	0.808066	3.72E-50	-1.69E-46
MS.gene052609	MS.gene86799	0.809453	1.88E-50	-1.69E-46
MS.gene053143	MS.gene86799	0.800942	1.14E-48	-1.69E-46
MS.gene053144	MS.gene86799	0.834757	2.49E-56	-1.69E-46
MS.gene053536	MS.gene86799	0.811048	8.50E-51	-1.69E-46
MS.gene053538	MS.gene86799	0.807499	4.91E-50	-1.69E-46
MS.gene054178	MS.gene86799	0.824852	6.45E-54	-1.69E-46
MS.gene054584	MS.gene86799	0.828141	1.06E-54	-1.69E-46
MS.gene054651	MS.gene86799	0.804648	1.95E-49	-1.69E-46
MS.gene055083	MS.gene86799	0.810485	1.13E-50	-1.69E-46
MS.gene055537	MS.gene86799	0.801913	7.19E-49	-1.69E-46
MS.gene056050	MS.gene86799	0.802648	5.08E-49	-1.69E-46
MS.gene056308	MS.gene86799	0.803503	3.38E-49	-1.69E-46
MS.gene056507	MS.gene86799	0.826412	2.75E-54	-1.69E-46
MS.gene05686	MS.gene86799	0.809026	2.32E-50	-1.69E-46
MS.gene057082	MS.gene86799	0.815063	1.12E-51	-1.69E-46
MS.gene057132	MS.gene86799	0.809365	1.96E-50	-1.69E-46
MS.gene058649	MS.gene86799	0.814911	1.21E-51	-1.69E-46
MS.gene058668	MS.gene86799	0.820214	7.72E-53	-1.69E-46
MS.gene05894	MS.gene86799	0.821813	3.31E-53	-1.69E-46
MS.gene059426	MS.gene86799	0.805736	1.16E-49	-1.69E-46
MS.gene059570	MS.gene86799	0.816636	4.99E-52	-1.69E-46
MS.gene061100	MS.gene86799	0.802945	4.41E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86799.t1	MTR_1g077600	95.489	266	7	4	1	266	9	269	0.0	512
MS.gene86799.t1	MTR_1g077600	95.489	266	7	4	1	266	9	269	0.0	511
MS.gene86799.t1	MTR_3g091820	44.755	286	103	13	23	264	30	304	1.67e-59	191
MS.gene86799.t1	MTR_8g027295	44.128	281	110	13	14	264	4	267	2.82e-58	187
MS.gene86799.t1	MTR_2g093220	75.000	72	18	0	19	90	23	94	1.08e-35	129
MS.gene86799.t1	MTR_3g077750	34.000	300	136	15	18	267	41	328	2.27e-34	127
MS.gene86799.t1	MTR_4g461080	47.445	137	65	2	18	147	11	147	2.06e-33	123
MS.gene86799.t1	MTR_8g068210	66.667	72	24	0	25	96	21	92	2.01e-29	114
MS.gene86799.t1	MTR_4g063780	66.667	72	18	1	33	98	72	143	4.62e-29	112
MS.gene86799.t1	MTR_8g079060	54.444	90	36	1	21	105	14	103	5.23e-29	110
MS.gene86799.t1	MTR_3g090430	60.976	82	24	1	16	97	39	112	6.82e-29	112
MS.gene86799.t1	MTR_1g056810	57.292	96	31	2	30	117	6	99	7.10e-29	111
MS.gene86799.t1	MTR_8g015840	65.823	79	23	2	18	96	5	79	7.82e-29	109
MS.gene86799.t1	MTR_3g435480	49.524	105	49	2	38	138	138	242	1.07e-28	114
MS.gene86799.t1	MTR_2g096740	53.261	92	43	0	36	127	62	153	1.22e-28	110
MS.gene86799.t1	MTR_7g024670	74.194	62	16	0	35	96	76	137	1.27e-28	112
MS.gene86799.t1	MTR_2g096740	53.261	92	43	0	36	127	77	168	1.55e-28	110
MS.gene86799.t1	MTR_2g014060	67.692	65	16	1	23	87	17	76	5.02e-28	110
MS.gene86799.t1	MTR_8g479350	61.972	71	27	0	31	101	63	133	5.34e-28	110
MS.gene86799.t1	MTR_4g088580	59.756	82	28	1	38	114	57	138	1.93e-27	109
MS.gene86799.t1	MTR_4g022370	70.690	58	17	0	33	90	79	136	2.98e-27	108
MS.gene86799.t1	MTR_5g031440	74.074	54	14	0	33	86	40	93	2.82e-26	105
MS.gene86799.t1	MTR_4g109980	75.472	53	13	0	34	86	38	90	6.25e-26	103
MS.gene86799.t1	MTR_2g059540	78.000	50	11	0	35	84	30	79	1.01e-25	100
MS.gene86799.t1	MTR_2g013370	57.971	69	28	1	22	90	32	99	1.39e-25	102
MS.gene86799.t1	MTR_4g082060	57.971	69	29	0	20	88	106	174	1.61e-24	102
MS.gene86799.t1	MTR_2g014170	76.000	50	12	0	35	84	44	93	1.70e-24	100
MS.gene86799.t1	MTR_6g012450	48.913	92	44	3	30	121	130	218	3.16e-24	101
MS.gene86799.t1	MTR_7g010950	65.517	58	20	0	36	93	135	192	3.57e-24	101
MS.gene86799.t1	MTR_4g089095	66.667	57	18	1	34	90	48	103	6.88e-24	98.2
MS.gene86799.t1	MTR_7g086780	44.248	113	53	4	16	126	83	187	9.19e-24	99.8
MS.gene86799.t1	MTR_4g089095	66.667	57	18	1	34	90	14	69	1.06e-23	97.1
MS.gene86799.t1	MTR_2g016030	63.636	55	20	0	33	87	44	98	1.73e-23	94.0
MS.gene86799.t1	MTR_5g041420	56.944	72	30	1	25	96	128	198	2.76e-23	97.1
MS.gene86799.t1	MTR_8g044220	56.452	62	27	0	30	91	112	173	3.51e-23	98.2
MS.gene86799.t1	MTR_6g027450	50.000	80	35	1	14	88	62	141	1.24e-22	95.5
MS.gene86799.t1	MTR_6g027460	47.561	82	37	2	7	88	73	148	1.94e-22	95.5
MS.gene86799.t1	MTR_5g041530	55.072	69	31	0	23	91	127	195	3.46e-22	94.7
MS.gene86799.t1	MTR_5g041400	66.667	51	17	0	38	88	121	171	2.21e-20	89.7
MS.gene86799.t1	MTR_5g041380	66.667	51	17	0	38	88	129	179	3.42e-20	89.0
MS.gene86799.t1	MTR_7g059400	24.272	309	146	10	9	265	51	323	4.94e-20	88.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86799.t1	AT4G24060	37.910	335	133	12	1	264	9	339	1.53e-48	164
MS.gene86799.t1	AT3G61850	42.909	275	102	14	29	267	55	310	3.87e-47	159
MS.gene86799.t1	AT3G61850	42.636	258	99	13	29	267	55	282	6.16e-47	158
MS.gene86799.t1	AT3G61850	42.636	258	99	13	29	267	55	282	6.16e-47	158
MS.gene86799.t1	AT3G61850	42.909	275	102	14	29	267	67	322	6.32e-47	159
MS.gene86799.t1	AT3G61850	42.636	258	99	13	29	267	67	294	1.00e-46	158
MS.gene86799.t1	AT1G64620	36.873	339	127	14	1	261	9	338	7.62e-38	136
MS.gene86799.t1	AT2G46590	39.414	307	113	15	23	266	57	353	2.38e-37	135
MS.gene86799.t1	AT2G46590	39.414	307	113	15	23	266	69	365	2.79e-37	135
MS.gene86799.t1	AT5G60200	52.885	104	47	1	30	131	49	152	2.52e-33	122
MS.gene86799.t1	AT1G51700	59.756	82	33	0	27	108	24	105	1.71e-31	115
MS.gene86799.t1	AT3G55370	69.118	68	21	0	33	100	73	140	2.71e-30	115
MS.gene86799.t1	AT3G55370	59.756	82	31	1	19	100	106	185	3.13e-30	116
MS.gene86799.t1	AT3G55370	69.118	68	21	0	33	100	73	140	3.24e-30	116
MS.gene86799.t1	AT1G21340	43.590	156	77	5	20	167	19	171	4.35e-30	114
MS.gene86799.t1	AT4G00940	82.759	58	10	0	33	90	65	122	4.55e-30	114
MS.gene86799.t1	AT4G00940	82.759	58	10	0	33	90	65	122	4.55e-30	114
MS.gene86799.t1	AT4G00940	82.759	58	10	0	33	90	65	122	4.55e-30	114
MS.gene86799.t1	AT2G28510	50.820	122	50	2	34	147	46	165	1.34e-29	113
MS.gene86799.t1	AT3G45610	56.322	87	36	2	20	106	25	109	1.49e-29	112
MS.gene86799.t1	AT5G65590	68.657	67	21	0	31	97	36	102	4.96e-29	112
MS.gene86799.t1	AT3G52440	75.410	61	15	0	38	98	27	87	1.01e-28	110
MS.gene86799.t1	AT3G52440	75.410	61	15	0	38	98	46	106	1.42e-28	110
MS.gene86799.t1	AT1G07640	78.182	55	12	0	36	90	21	75	6.06e-28	108
MS.gene86799.t1	AT4G38000	61.538	65	25	0	26	90	31	95	7.28e-28	107
MS.gene86799.t1	AT2G37590	70.000	60	18	0	33	92	86	145	7.58e-28	109
MS.gene86799.t1	AT1G07640	78.182	55	12	0	36	90	77	131	7.87e-28	109
MS.gene86799.t1	AT1G07640	78.182	55	12	0	36	90	85	139	9.34e-28	109
MS.gene86799.t1	AT5G60850	58.108	74	31	0	34	107	49	122	1.15e-27	108
MS.gene86799.t1	AT3G21270	73.684	57	15	0	36	92	29	85	1.50e-27	105
MS.gene86799.t1	AT3G50410	61.429	70	27	0	21	90	15	84	1.90e-27	106
MS.gene86799.t1	AT1G28310	48.624	109	56	0	36	144	27	135	2.08e-27	107
MS.gene86799.t1	AT5G66940	65.152	66	23	0	32	97	28	93	2.35e-27	105
MS.gene86799.t1	AT1G28310	48.624	109	56	0	36	144	51	159	2.61e-27	108
MS.gene86799.t1	AT2G28810	67.213	61	20	0	27	87	68	128	6.13e-27	107
MS.gene86799.t1	AT2G28810	67.213	61	20	0	27	87	85	145	9.56e-27	106
MS.gene86799.t1	AT5G02460	68.966	58	18	0	33	90	92	149	6.81e-26	105
MS.gene86799.t1	AT5G62940	72.131	61	14	1	26	86	66	123	7.26e-26	104
MS.gene86799.t1	AT1G47655	61.538	65	25	0	21	85	14	78	9.46e-26	101
MS.gene86799.t1	AT4G21050	68.333	60	19	0	38	97	26	85	1.28e-24	98.2
MS.gene86799.t1	AT2G34140	49.398	83	38	1	6	88	32	110	1.90e-24	96.7
MS.gene86799.t1	AT1G69570	60.526	76	26	1	20	95	120	191	2.19e-24	101
MS.gene86799.t1	AT1G29160	50.667	75	37	0	15	89	41	115	6.45e-24	95.5
MS.gene86799.t1	AT5G62430	53.947	76	31	1	16	91	38	109	7.36e-24	98.2
MS.gene86799.t1	AT5G39660	43.878	98	51	1	30	127	132	225	9.21e-24	100
MS.gene86799.t1	AT5G39660	43.878	98	51	1	30	127	132	225	9.21e-24	100
MS.gene86799.t1	AT5G39660	43.878	98	51	1	30	127	132	225	9.21e-24	100
MS.gene86799.t1	AT3G47500	63.793	58	21	0	36	93	110	167	2.15e-23	99.0
MS.gene86799.t1	AT1G26790	54.545	77	31	1	12	88	91	163	7.05e-23	96.7
MS.gene86799.t1	AT4G21040	75.510	49	12	0	38	86	27	75	7.51e-23	94.0
MS.gene86799.t1	AT4G21080	75.510	49	12	0	38	86	27	75	4.28e-22	92.4
MS.gene86799.t1	AT4G21030	53.333	60	28	0	38	97	23	82	1.49e-13	68.2

Find 62 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAATATTGCCTTCTATTAA+TGG	0.125175	1.1:-58116680	None:intergenic
GAAGGCCAAGATCTAAATTT+AGG	0.134252	1.1:+58117031	MS.gene86799:CDS
CTTCTTCATGATGGATCTTA+TGG	0.177246	1.1:-58117012	None:intergenic
CATGATGGATCTTATGGTTT+TGG	0.189658	1.1:-58117006	None:intergenic
GCTTCTTGTTTCTGTTGTTT+TGG	0.223578	1.1:-58116746	None:intergenic
TTGAATATTGAAGGAGATTA+TGG	0.238550	1.1:+58116652	None:intergenic
CCCTCACATATCTGATCATT+TGG	0.252769	1.1:+58117057	MS.gene86799:CDS
TGACGGATTTGAAACAAAAT+TGG	0.261701	1.1:-58116954	None:intergenic
TAACCCAACAATATTGGATT+TGG	0.276934	1.1:+58117363	MS.gene86799:CDS
TACAAATAACCCAACAATAT+TGG	0.279491	1.1:+58117357	MS.gene86799:CDS
TTCCTGTTGGTGGTGGTTCT+AGG	0.290051	1.1:+58116900	MS.gene86799:CDS
CCAATGAATTTCTGTTTAGA+TGG	0.293399	1.1:+58117229	MS.gene86799:CDS
TTCATGCCTGCTCAAGTTCA+AGG	0.318142	1.1:+58117172	MS.gene86799:CDS
AAGGATATTCAACAGGGATT+TGG	0.319140	1.1:+58117413	MS.gene86799:CDS
TTCTTCTACTTCTTCAGCAT+TGG	0.346624	1.1:+58117102	MS.gene86799:CDS
TTTGGATCAGAATAATAATA+AGG	0.356949	1.1:+58117381	MS.gene86799:CDS
GGAACCCTAAATTTAGATCT+TGG	0.357337	1.1:-58117036	None:intergenic
AAGGCCAAGATCTAAATTTA+GGG	0.366987	1.1:+58117032	MS.gene86799:CDS
GATCAACAAGGATATTCAAC+AGG	0.388223	1.1:+58117406	MS.gene86799:CDS
TTTGGCTTCCTTTCCAACAT+AGG	0.393371	1.1:-58116728	None:intergenic
GATCCAAATCCAATATTGTT+GGG	0.402423	1.1:-58117366	None:intergenic
GCAAAACATGTAGAAGGTAT+TGG	0.410442	1.1:+58116852	MS.gene86799:CDS
GATCTTGGCCTTCTTCATGA+TGG	0.411783	1.1:-58117021	None:intergenic
CAGGTTTGAGTTCAAGTTCA+AGG	0.413495	1.1:+58117137	MS.gene86799:CDS
TTCTGTTTAGATGGGATCTC+AGG	0.420885	1.1:+58117238	MS.gene86799:CDS
ACCAACAGGAATGTTTCTAA+TGG	0.426405	1.1:-58116888	None:intergenic
GGGATTTGGACTGGAATGTT+GGG	0.441281	1.1:+58117427	MS.gene86799:CDS
CCTGCTCAAGTTCAAGGTTG+TGG	0.443611	1.1:+58117178	MS.gene86799:CDS
TTCCTAGAACCACCACCAAC+AGG	0.444902	1.1:-58116902	None:intergenic
CCATCTAAACAGAAATTCAT+TGG	0.447886	1.1:-58117229	None:intergenic
ACTGGAATGTTGGGAGGAGG+AGG	0.456613	1.1:+58117436	MS.gene86799:CDS
ATTTCTGCAAAACATGTAGA+AGG	0.460389	1.1:+58116846	MS.gene86799:CDS
GCATTGGAGCTTCTTACTGC+AGG	0.462786	1.1:+58117118	MS.gene86799:CDS
TGATCCAAATCCAATATTGT+TGG	0.463007	1.1:-58117367	None:intergenic
AGGGATTTGGACTGGAATGT+TGG	0.470831	1.1:+58117426	MS.gene86799:CDS
CAATGAATTTCTGTTTAGAT+GGG	0.475119	1.1:+58117230	MS.gene86799:CDS
TGGACTGGAATGTTGGGAGG+AGG	0.475312	1.1:+58117433	MS.gene86799:CDS
GGAATGTTGGGAGGAGGAGG+AGG	0.484270	1.1:+58117439	MS.gene86799:CDS
ACATGTTTCAAATCCTCAAA+AGG	0.498889	1.1:-58117328	None:intergenic
CATAAGATCCATCATGAAGA+AGG	0.500791	1.1:+58117013	MS.gene86799:CDS
AGAAACATTCCTGTTGGTGG+TGG	0.512070	1.1:+58116893	MS.gene86799:CDS
AAGAGACAATTAGTGAAGGA+AGG	0.513089	1.1:+58117296	MS.gene86799:CDS
TATTCAACAGGGATTTGGAC+TGG	0.519358	1.1:+58117418	MS.gene86799:CDS
ATTAGAAACATTCCTGTTGG+TGG	0.530061	1.1:+58116890	MS.gene86799:CDS
AGAGACAATTAGTGAAGGAA+GGG	0.538775	1.1:+58117297	MS.gene86799:CDS
CCACAACCTTGAACTTGAGC+AGG	0.540402	1.1:-58117178	None:intergenic
AGGTTTGAGTTCAAGTTCAA+GGG	0.544319	1.1:+58117138	MS.gene86799:CDS
TCCATTAGAAACATTCCTGT+TGG	0.554777	1.1:+58116887	MS.gene86799:CDS
AAGAAGCAATTAACTGTCCA+AGG	0.557523	1.1:+58116762	MS.gene86799:CDS
TGTAGAAGGTATTGGACTCA+AGG	0.565800	1.1:+58116860	MS.gene86799:CDS
ATGGTGAAGCCATTAATAGA+AGG	0.568853	1.1:+58116671	MS.gene86799:CDS
TTAGATGGGATCTCAGGAAG+TGG	0.574889	1.1:+58117244	MS.gene86799:CDS
TATGCAAGTACTCTTGATCA+TGG	0.590246	1.1:+58117268	MS.gene86799:CDS
GTGTTAATTGAATTACACCT+TGG	0.593541	1.1:-58116779	None:intergenic
ATTTGGACTGGAATGTTGGG+AGG	0.599027	1.1:+58117430	MS.gene86799:CDS
ACTTGCTTAAAATCTTGCAA+AGG	0.603902	1.1:-58117205	None:intergenic
CCAAATGATCAGATATGTGA+GGG	0.610063	1.1:-58117057	None:intergenic
ACCAAATGATCAGATATGTG+AGG	0.628381	1.1:-58117058	None:intergenic
GTTCAAGAGACAATTAGTGA+AGG	0.630784	1.1:+58117292	MS.gene86799:CDS
AGAAGGTATTGGACTCAAGG+TGG	0.674278	1.1:+58116863	MS.gene86799:CDS
AATAATAAGGAAGATCAACA+AGG	0.712044	1.1:+58117394	MS.gene86799:CDS
ATCAACAAGGATATTCAACA+GGG	0.718207	1.1:+58117407	MS.gene86799:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTGGATCAGAATAATAATA+AGG	+	chr1.1:58117381-58117400	MS.gene86799:CDS	20.0%
!	AATAATAAGGAAGATCAACA+AGG	+	chr1.1:58117394-58117413	MS.gene86799:CDS	25.0%
!	ACAATATTGCCTTCTATTAA+TGG	-	chr1.1:58116683-58116702	None:intergenic	25.0%
!	CAATGAATTTCTGTTTAGAT+GGG	+	chr1.1:58117230-58117249	MS.gene86799:CDS	25.0%
!	TACAAATAACCCAACAATAT+TGG	+	chr1.1:58117357-58117376	MS.gene86799:CDS	25.0%
!!!	TCAAGTATGTTTTTTGTTGA+AGG	-	chr1.1:58116980-58116999	None:intergenic	25.0%
	AAGGCCAAGATCTAAATTTA+GGG	+	chr1.1:58117032-58117051	MS.gene86799:CDS	30.0%
	ACATGTTTCAAATCCTCAAA+AGG	-	chr1.1:58117331-58117350	None:intergenic	30.0%
	ACTTGCTTAAAATCTTGCAA+AGG	-	chr1.1:58117208-58117227	None:intergenic	30.0%
	ATCAACAAGGATATTCAACA+GGG	+	chr1.1:58117407-58117426	MS.gene86799:CDS	30.0%
	ATTTCTGCAAAACATGTAGA+AGG	+	chr1.1:58116846-58116865	MS.gene86799:CDS	30.0%
	CCAATGAATTTCTGTTTAGA+TGG	+	chr1.1:58117229-58117248	MS.gene86799:CDS	30.0%
	CCATCTAAACAGAAATTCAT+TGG	-	chr1.1:58117232-58117251	None:intergenic	30.0%
	GATCCAAATCCAATATTGTT+GGG	-	chr1.1:58117369-58117388	None:intergenic	30.0%
	GTGTTAATTGAATTACACCT+TGG	-	chr1.1:58116782-58116801	None:intergenic	30.0%
	TAACCCAACAATATTGGATT+TGG	+	chr1.1:58117363-58117382	MS.gene86799:CDS	30.0%
	TACATGTGAAAAACCTATGT+TGG	+	chr1.1:58116715-58116734	MS.gene86799:CDS	30.0%
	TGATCCAAATCCAATATTGT+TGG	-	chr1.1:58117370-58117389	None:intergenic	30.0%
!	CATGTTTTGCAGAAATATCT+TGG	-	chr1.1:58116842-58116861	None:intergenic	30.0%
!!	TGACGGATTTGAAACAAAAT+TGG	-	chr1.1:58116957-58116976	None:intergenic	30.0%
!!!	ATGTTTTTTGTTGAAGGTGA+CGG	-	chr1.1:58116974-58116993	None:intergenic	30.0%
	AAGAAGCAATTAACTGTCCA+AGG	+	chr1.1:58116762-58116781	MS.gene86799:CDS	35.0%
	AAGAGACAATTAGTGAAGGA+AGG	+	chr1.1:58117296-58117315	MS.gene86799:CDS	35.0%
	AAGGATATTCAACAGGGATT+TGG	+	chr1.1:58117413-58117432	MS.gene86799:CDS	35.0%
	ACCAAATGATCAGATATGTG+AGG	-	chr1.1:58117061-58117080	None:intergenic	35.0%
	AGAGACAATTAGTGAAGGAA+GGG	+	chr1.1:58117297-58117316	MS.gene86799:CDS	35.0%
	ATGGTGAAGCCATTAATAGA+AGG	+	chr1.1:58116671-58116690	MS.gene86799:CDS	35.0%
	ATTAGAAACATTCCTGTTGG+TGG	+	chr1.1:58116890-58116909	MS.gene86799:CDS	35.0%
	CATAAGATCCATCATGAAGA+AGG	+	chr1.1:58117013-58117032	MS.gene86799:CDS	35.0%
	CCAAATGATCAGATATGTGA+GGG	-	chr1.1:58117060-58117079	None:intergenic	35.0%
	GAAGGCCAAGATCTAAATTT+AGG	+	chr1.1:58117031-58117050	MS.gene86799:CDS	35.0%
	GATCAACAAGGATATTCAAC+AGG	+	chr1.1:58117406-58117425	MS.gene86799:CDS	35.0%
	GGAACCCTAAATTTAGATCT+TGG	-	chr1.1:58117039-58117058	None:intergenic	35.0%
	GTGAAAAACCTATGTTGGAA+AGG	+	chr1.1:58116720-58116739	MS.gene86799:CDS	35.0%
	GTTCAAGAGACAATTAGTGA+AGG	+	chr1.1:58117292-58117311	MS.gene86799:CDS	35.0%
	TATGCAAGTACTCTTGATCA+TGG	+	chr1.1:58117268-58117287	MS.gene86799:CDS	35.0%
	TCCATTAGAAACATTCCTGT+TGG	+	chr1.1:58116887-58116906	MS.gene86799:CDS	35.0%
	TTCTTCTACTTCTTCAGCAT+TGG	+	chr1.1:58117102-58117121	MS.gene86799:CDS	35.0%
!	ACCAACAGGAATGTTTCTAA+TGG	-	chr1.1:58116891-58116910	None:intergenic	35.0%
!	AGGTTTGAGTTCAAGTTCAA+GGG	+	chr1.1:58117138-58117157	MS.gene86799:CDS	35.0%
!	GCAAAACATGTAGAAGGTAT+TGG	+	chr1.1:58116852-58116871	MS.gene86799:CDS	35.0%
!!	CTTCTTCATGATGGATCTTA+TGG	-	chr1.1:58117015-58117034	None:intergenic	35.0%
!!!	AAGGGTTTTGTTTCCTTTTG+AGG	+	chr1.1:58117315-58117334	MS.gene86799:CDS	35.0%
!!!	CATGATGGATCTTATGGTTT+TGG	-	chr1.1:58117009-58117028	None:intergenic	35.0%
!!!	GCTTCTTGTTTCTGTTGTTT+TGG	-	chr1.1:58116749-58116768	None:intergenic	35.0%
	CCCTCACATATCTGATCATT+TGG	+	chr1.1:58117057-58117076	MS.gene86799:CDS	40.0%
	TATTCAACAGGGATTTGGAC+TGG	+	chr1.1:58117418-58117437	MS.gene86799:CDS	40.0%
	TTCTGTTTAGATGGGATCTC+AGG	+	chr1.1:58117238-58117257	MS.gene86799:CDS	40.0%
!	CAGGTTTGAGTTCAAGTTCA+AGG	+	chr1.1:58117137-58117156	MS.gene86799:CDS	40.0%
!	TTTGGCTTCCTTTCCAACAT+AGG	-	chr1.1:58116731-58116750	None:intergenic	40.0%
!!	TGTAGAAGGTATTGGACTCA+AGG	+	chr1.1:58116860-58116879	MS.gene86799:CDS	40.0%
	TTAGATGGGATCTCAGGAAG+TGG	+	chr1.1:58117244-58117263	MS.gene86799:CDS	45.0%
	TTCATGCCTGCTCAAGTTCA+AGG	+	chr1.1:58117172-58117191	MS.gene86799:CDS	45.0%
!	AGAAACATTCCTGTTGGTGG+TGG	+	chr1.1:58116893-58116912	MS.gene86799:CDS	45.0%
!	AGGGATTTGGACTGGAATGT+TGG	+	chr1.1:58117426-58117445	MS.gene86799:CDS	45.0%
!	ATTTGGACTGGAATGTTGGG+AGG	+	chr1.1:58117430-58117449	MS.gene86799:CDS	45.0%
!	GATCTTGGCCTTCTTCATGA+TGG	-	chr1.1:58117024-58117043	None:intergenic	45.0%
!	GGGATTTGGACTGGAATGTT+GGG	+	chr1.1:58117427-58117446	MS.gene86799:CDS	45.0%
!!	AGAAGGTATTGGACTCAAGG+TGG	+	chr1.1:58116863-58116882	MS.gene86799:CDS	45.0%
	CCACAACCTTGAACTTGAGC+AGG	-	chr1.1:58117181-58117200	None:intergenic	50.0%
	CCTGCTCAAGTTCAAGGTTG+TGG	+	chr1.1:58117178-58117197	MS.gene86799:CDS	50.0%
	GCATTGGAGCTTCTTACTGC+AGG	+	chr1.1:58117118-58117137	MS.gene86799:CDS	50.0%
	TTCCTAGAACCACCACCAAC+AGG	-	chr1.1:58116905-58116924	None:intergenic	50.0%
!!	TTCCTGTTGGTGGTGGTTCT+AGG	+	chr1.1:58116900-58116919	MS.gene86799:CDS	50.0%
	ACTGGAATGTTGGGAGGAGG+AGG	+	chr1.1:58117436-58117455	MS.gene86799:CDS	55.0%
!	TGGACTGGAATGTTGGGAGG+AGG	+	chr1.1:58117433-58117452	MS.gene86799:CDS	55.0%
	GGAATGTTGGGAGGAGGAGG+AGG	+	chr1.1:58117439-58117458	MS.gene86799:CDS	60.0%
	TGGGAGGAGGAGGAGGATCA+TGG	+	chr1.1:58117446-58117465	MS.gene86799:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	58116665	58117467	58116665	ID=MS.gene86799
chr1.1	mRNA	58116665	58117467	58116665	ID=MS.gene86799.t1;Parent=MS.gene86799
chr1.1	exon	58116665	58117467	58116665	ID=MS.gene86799.t1.exon1;Parent=MS.gene86799.t1
chr1.1	CDS	58116665	58117467	58116665	ID=cds.MS.gene86799.t1;Parent=MS.gene86799.t1

Gene Sequence

>MS.gene86799

GAGATTATGGTGAAGCCATTAATAGAAGGCAATATTGTAGTAGCAACAAATACATGTGAAAAACCTATGTTGGAAAGGAAGCCAAAACAACAGAAACAAGAAGCAATTAACTGTCCAAGGTGTAATTCAATTAACACAAAATTCTGTTACTACAACAACTATAGTTTGACACAACCAAGATATTTCTGCAAAACATGTAGAAGGTATTGGACTCAAGGTGGATCCATTAGAAACATTCCTGTTGGTGGTGGTTCTAGGAAAAACAACAAAAATAGATCTTCTAATTCTTCCAATTTTGTTTCAAATCCGTCACCTTCAACAAAAAACATACTTGATGAAAACCAAAACCATAAGATCCATCATGAAGAAGGCCAAGATCTAAATTTAGGGTTCCCTCACATATCTGATCATTTGGTTCAGCAAAATAACAACACTTCTTCTTCTACTTCTTCAGCATTGGAGCTTCTTACTGCAGGTTTGAGTTCAAGTTCAAGGGATTTGCATTCTTTCATGCCTGCTCAAGTTCAAGGTTGTGGATTTCCTTTGCAAGATTTTAAGCAAGTGCCAATGAATTTCTGTTTAGATGGGATCTCAGGAAGTGGTTATGCAAGTACTCTTGATCATGGTGTTCAAGAGACAATTAGTGAAGGAAGGGTTTTGTTTCCTTTTGAGGATTTGAAACATGTTTCTAGTACAAATAACCCAACAATATTGGATTTGGATCAGAATAATAATAAGGAAGATCAACAAGGATATTCAACAGGGATTTGGACTGGAATGTTGGGAGGAGGAGGAGGATCATG

Protein sequence

>MS.gene86799.t1

EIMVKPLIEGNIVVATNTCEKPMLERKPKQQKQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNNKNRSSNSSNFVSNPSPSTKNILDENQNHKIHHEEGQDLNLGFPHISDHLVQQNNNTSSSTSSALELLTAGLSSSSRDLHSFMPAQVQGCGFPLQDFKQVPMNFCLDGISGSGYASTLDHGVQETISEGRVLFPFEDLKHVSSTNNPTILDLDQNNNKEDQQGYSTGIWTGMLGGGGGS