Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87544.t1 | XP_003605013.2 | 97.8 | 408 | 8 | 1 | 3 | 410 | 11 | 417 | 2.20E-226 | 794.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87544.t1 | Q08A72 | 56.0 | 423 | 161 | 12 | 3 | 410 | 11 | 423 | 4.8e-113 | 409.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87544.t1 | G7JVQ8 | 97.8 | 408 | 8 | 1 | 3 | 410 | 11 | 417 | 1.6e-226 | 794.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene87544 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene87544 | 0.83126 | 1.85E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene87544 | 0.817429 | 3.31E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene87544 | 0.846037 | 2.79E-59 | -1.69E-46 |
| MS.gene051247 | MS.gene87544 | 0.811002 | 8.70E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene87544 | 0.803848 | 2.87E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene87544 | 0.812157 | 4.88E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene87544 | 0.852714 | 3.85E-61 | -1.69E-46 |
| MS.gene052463 | MS.gene87544 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene87544 | 0.822967 | 1.78E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene87544 | 0.806941 | 6.44E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene87544 | 0.822053 | 2.91E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene87544 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene87544 | 0.853548 | 2.22E-61 | -1.69E-46 |
| MS.gene053296 | MS.gene87544 | 0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene87544 | 0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene87544 | 0.81657 | 5.17E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene87544 | 0.807668 | 4.52E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene87544 | 0.838616 | 2.59E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene87544 | 0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene054991 | MS.gene87544 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene87544 | 0.848257 | 6.88E-60 | -1.69E-46 |
| MS.gene056308 | MS.gene87544 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene87544 | 0.811881 | 5.61E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene87544 | 0.829561 | 4.80E-55 | -1.69E-46 |
| MS.gene057034 | MS.gene87544 | 0.807564 | 4.75E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene87544 | 0.812887 | 3.38E-51 | -1.69E-46 |
| MS.gene058668 | MS.gene87544 | 0.814972 | 1.17E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene87544 | 0.80125 | 9.84E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene87544 | 0.815993 | 6.95E-52 | -1.69E-46 |
| MS.gene059570 | MS.gene87544 | 0.800764 | 1.24E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene87544 | 0.80764 | 4.58E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene87544 | 0.800205 | 1.61E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87544.t1 | MTR_4g022860 | 97.794 | 408 | 8 | 1 | 3 | 410 | 11 | 417 | 0.0 | 810 |
| MS.gene87544.t1 | MTR_2g060720 | 78.935 | 413 | 78 | 5 | 3 | 410 | 11 | 419 | 0.0 | 649 |
| MS.gene87544.t1 | MTR_2g060720 | 78.935 | 413 | 78 | 5 | 3 | 410 | 11 | 419 | 0.0 | 648 |
| MS.gene87544.t1 | MTR_1g053905 | 51.733 | 375 | 122 | 7 | 43 | 410 | 1 | 323 | 6.14e-118 | 348 |
| MS.gene87544.t1 | MTR_4g100880 | 40.548 | 365 | 98 | 10 | 52 | 410 | 19 | 270 | 1.11e-65 | 212 |
| MS.gene87544.t1 | MTR_7g086660 | 46.154 | 91 | 41 | 1 | 41 | 131 | 19 | 101 | 8.13e-19 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87544.t1 | AT2G44440 | 55.609 | 419 | 161 | 12 | 7 | 410 | 15 | 423 | 3.37e-137 | 400 |
| MS.gene87544.t1 | AT5G13020 | 55.932 | 413 | 148 | 14 | 3 | 410 | 11 | 394 | 9.76e-135 | 393 |
| MS.gene87544.t1 | AT5G13020 | 57.544 | 285 | 98 | 8 | 3 | 286 | 11 | 273 | 3.42e-98 | 295 |
| MS.gene87544.t1 | AT5G13020 | 57.706 | 279 | 95 | 8 | 3 | 280 | 11 | 267 | 5.69e-95 | 289 |
| MS.gene87544.t1 | AT3G12140 | 48.663 | 374 | 122 | 11 | 43 | 409 | 1 | 311 | 2.25e-93 | 286 |
| MS.gene87544.t1 | AT3G12140 | 48.128 | 374 | 124 | 8 | 43 | 409 | 1 | 311 | 3.05e-93 | 284 |
| MS.gene87544.t1 | AT3G12140 | 48.128 | 374 | 124 | 8 | 43 | 409 | 1 | 311 | 3.05e-93 | 284 |
| MS.gene87544.t1 | AT5G06780 | 44.892 | 372 | 131 | 9 | 41 | 410 | 6 | 305 | 4.39e-87 | 268 |
| MS.gene87544.t1 | AT5G06780 | 44.865 | 370 | 130 | 9 | 43 | 410 | 1 | 298 | 2.68e-86 | 266 |
Find 145 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCTCAAATTGATGAATT+TGG | 0.057839 | 4.1:-75469269 | None:intergenic |
| GGCATCAGCTTGAGCTTTAA+AGG | 0.189479 | 4.1:-75469316 | None:intergenic |
| TTCATTCTAGTTATTATCTT+TGG | 0.245367 | 4.1:-75472809 | None:intergenic |
| CTGCTCAAATTGATGAATTT+GGG | 0.248430 | 4.1:-75469268 | None:intergenic |
| GAATACCACTGCAGCACTTT+TGG | 0.251017 | 4.1:-75472763 | None:intergenic |
| GTGGGGTGCAGTCACCGTTT+GGG | 0.273854 | 4.1:-75469871 | None:intergenic |
| GTGAAGCAGTTTCCTCCTTC+AGG | 0.298739 | 4.1:+75470097 | MS.gene87544:CDS |
| AGGGTTGTAAATACATCATT+TGG | 0.303513 | 4.1:-75470271 | None:intergenic |
| GAAAGCGAAGAAAGTATTAA+AGG | 0.307793 | 4.1:+75472457 | MS.gene87544:CDS |
| GGTGGGGTGCAGTCACCGTT+TGG | 0.329374 | 4.1:-75469872 | None:intergenic |
| CCCAGGGGAGGACGTCTTGC+TGG | 0.333143 | 4.1:+75469180 | MS.gene87544:CDS |
| TGCTTCTTCCCCTTTGATCC+AGG | 0.337252 | 4.1:-75469930 | None:intergenic |
| CTCAAGCTGATGCCATTACT+TGG | 0.350686 | 4.1:+75469325 | MS.gene87544:CDS |
| TCACCCATGACAGCTCTATT+AGG | 0.372456 | 4.1:-75470142 | None:intergenic |
| CCCGTACCATCACGGTCTTT+TGG | 0.372846 | 4.1:+75469825 | MS.gene87544:CDS |
| AAAGTGCTGCAGTGGTATTC+CGG | 0.376511 | 4.1:+75472766 | MS.gene87544:CDS |
| ATTCTAGTTATTATCTTTGG+TGG | 0.387590 | 4.1:-75472806 | None:intergenic |
| TCTTCGCTTTCTCAATTTCA+AGG | 0.392109 | 4.1:-75472445 | None:intergenic |
| ACACACAGACACACTAATAA+AGG | 0.400164 | 4.1:+75472293 | MS.gene87544:CDS |
| TTCTCAATTTCAAGGGGATC+AGG | 0.400539 | 4.1:-75472437 | None:intergenic |
| GAGGAACACCGAGAACTTCT+AGG | 0.404953 | 4.1:+75469482 | MS.gene87544:CDS |
| ATTCCATACCCCAGGGTGTA+TGG | 0.428479 | 4.1:+75469228 | MS.gene87544:CDS |
| CTTCGCTTTCTCAATTTCAA+GGG | 0.434239 | 4.1:-75472444 | None:intergenic |
| TCTTCTGCAAAACGAGGATC+TGG | 0.437978 | 4.1:+75469906 | MS.gene87544:CDS |
| CAGTTTCCTCCTTCAGGACC+TGG | 0.440455 | 4.1:+75470103 | MS.gene87544:CDS |
| CCCAGCAAGACGTCCTCCCC+TGG | 0.440734 | 4.1:-75469181 | None:intergenic |
| CCAGGAGTTGGAAGAGGTAG+AGG | 0.441154 | 4.1:+75472189 | MS.gene87544:CDS |
| TTGGTTCAATTCCATACCCC+AGG | 0.441243 | 4.1:+75469220 | MS.gene87544:CDS |
| TGCGAGATGCAGAAACTGTC+GGG | 0.449640 | 4.1:-75469782 | None:intergenic |
| TCATAGAAGTTATTGTCGTC+AGG | 0.452667 | 4.1:-75470226 | None:intergenic |
| TTGCGAGATGCAGAAACTGT+CGG | 0.458045 | 4.1:-75469783 | None:intergenic |
| TCTACCAACTGAATATCTTC+AGG | 0.459149 | 4.1:-75472081 | None:intergenic |
| TGGGGTGCAGTCACCGTTTG+GGG | 0.462044 | 4.1:-75469870 | None:intergenic |
| GTCCTGGTCATGGGATGAAT+AGG | 0.465538 | 4.1:+75472145 | MS.gene87544:CDS |
| CCTCTACCTCTTCCAACTCC+TGG | 0.466468 | 4.1:-75472189 | None:intergenic |
| CGTGAGAGTGGTCCAGGAGT+TGG | 0.470322 | 4.1:+75472177 | MS.gene87544:CDS |
| GGATCTGGTCCTGGATCAAA+GGG | 0.471818 | 4.1:+75469921 | MS.gene87544:CDS |
| TCACCATACACCCTGGGGTA+TGG | 0.471834 | 4.1:-75469231 | None:intergenic |
| GGAGGACGTCTTGCTGGGAA+TGG | 0.480010 | 4.1:+75469186 | MS.gene87544:CDS |
| GGTGTATGGTGAAATTGATA+TGG | 0.486233 | 4.1:+75469242 | MS.gene87544:CDS |
| GTAGGGCGTGAGAGTGGTCC+AGG | 0.486551 | 4.1:+75472171 | MS.gene87544:CDS |
| CACAGTTTGGTCTATGACAT+GGG | 0.488038 | 4.1:+75470371 | MS.gene87544:CDS |
| GATGCAGAAACTGTCGGGCT+GGG | 0.488318 | 4.1:-75469777 | None:intergenic |
| ACCAAAAGACCGTGATGGTA+CGG | 0.489800 | 4.1:-75469826 | None:intergenic |
| AGATGCAGAAACTGTCGGGC+TGG | 0.491223 | 4.1:-75469778 | None:intergenic |
| TAACCCGACCTAGAAGTTCT+CGG | 0.494738 | 4.1:-75469490 | None:intergenic |
| TGCAAATGAAACATGGGAAT+GGG | 0.495232 | 4.1:+75470397 | MS.gene87544:CDS |
| TCATTCGATGCTCCACTGAT+TGG | 0.497222 | 4.1:+75470181 | MS.gene87544:CDS |
| AGTACCTAATAGAGCTGTCA+TGG | 0.500967 | 4.1:+75470138 | MS.gene87544:CDS |
| CCAAATTCATCAATTTGAGC+AGG | 0.505306 | 4.1:+75469269 | MS.gene87544:CDS |
| GCAAAACGAGGATCTGGTCC+TGG | 0.506667 | 4.1:+75469912 | MS.gene87544:CDS |
| CTCCTTCAGGACCTGGTGGA+AGG | 0.508001 | 4.1:+75470110 | MS.gene87544:CDS |
| ATGACACAATACGGAGGATA+AGG | 0.509272 | 4.1:+75469519 | MS.gene87544:CDS |
| TTGAATTTCACAGGTGGAGA+GGG | 0.510074 | 4.1:+75472397 | MS.gene87544:intron |
| AGGATCTGGTCCTGGATCAA+AGG | 0.512402 | 4.1:+75469920 | MS.gene87544:CDS |
| TACTCAGCATGCCGGTCTGA+TGG | 0.515617 | 4.1:-75469728 | None:intergenic |
| TTGTCATCACAGAATGGCAT+AGG | 0.516282 | 4.1:+75472243 | MS.gene87544:CDS |
| CAGACCGGCATGCTGAGTAC+TGG | 0.518275 | 4.1:+75469732 | MS.gene87544:CDS |
| CTGCAAATGAAACATGGGAA+TGG | 0.530885 | 4.1:+75470396 | MS.gene87544:CDS |
| ACACCGAGAACTTCTAGGTC+GGG | 0.532796 | 4.1:+75469487 | MS.gene87544:CDS |
| AGATATTCAGTTGGTAGAAG+AGG | 0.538459 | 4.1:+75472086 | MS.gene87544:CDS |
| TTCGCTTTCTCAATTTCAAG+GGG | 0.538679 | 4.1:-75472443 | None:intergenic |
| TGTAGTATCTGAATATCATC+GGG | 0.543121 | 4.1:-75472273 | None:intergenic |
| CCAGGGGAGGACGTCTTGCT+GGG | 0.545719 | 4.1:+75469181 | MS.gene87544:CDS |
| TTGCAGGGTCAAATATTACC+TGG | 0.548796 | 4.1:+75470064 | MS.gene87544:intron |
| ATCCTGAAAGTAATCATCGC+GGG | 0.550186 | 4.1:+75472112 | MS.gene87544:CDS |
| CAGGAGTTGGAAGAGGTAGA+GGG | 0.551041 | 4.1:+75472190 | MS.gene87544:CDS |
| TTGCAGAAGAAGAAGATGGC+TGG | 0.551182 | 4.1:-75469893 | None:intergenic |
| GTGTAGTATCTGAATATCAT+CGG | 0.551674 | 4.1:-75472274 | None:intergenic |
| ATCAATTTCACCATACACCC+TGG | 0.551914 | 4.1:-75469238 | None:intergenic |
| TGGGGACTGCAAATGAAACA+TGG | 0.553926 | 4.1:+75470390 | MS.gene87544:CDS |
| CCCATCAAAATAGAATTCCC+AGG | 0.553961 | 4.1:+75469163 | MS.gene87544:CDS |
| TTCCTTCCACCAGGTCCTGA+AGG | 0.555307 | 4.1:-75470112 | None:intergenic |
| CCAAAAGACCGTGATGGTAC+GGG | 0.558822 | 4.1:-75469825 | None:intergenic |
| CATGGGATGAATAGGTCTGT+AGG | 0.560661 | 4.1:+75472153 | MS.gene87544:CDS |
| GGAGCAACCACTCTGTAAGC+CGG | 0.562554 | 4.1:-75472785 | None:intergenic |
| TATTCAGTTGGTAGAAGAGG+AGG | 0.562816 | 4.1:+75472089 | MS.gene87544:CDS |
| AGTGGTCCAGGAGTTGGAAG+AGG | 0.563371 | 4.1:+75472183 | MS.gene87544:CDS |
| GGTACTTGATTCCTTCCACC+AGG | 0.563847 | 4.1:-75470121 | None:intergenic |
| AAGAGGTAGAGGGGTTCCAA+AGG | 0.564857 | 4.1:+75472200 | MS.gene87544:CDS |
| AGAGGTAGAGGGGTTCCAAA+GGG | 0.565630 | 4.1:+75472201 | MS.gene87544:CDS |
| AGTAAAATATACCCAAGTAA+TGG | 0.565852 | 4.1:-75469337 | None:intergenic |
| TTTCCTCCTTCAGGACCTGG+TGG | 0.566342 | 4.1:+75470106 | MS.gene87544:CDS |
| GGGAATGGAAGATCTGCTGT+TGG | 0.569786 | 4.1:+75469201 | MS.gene87544:CDS |
| TCAATTTCACCATACACCCT+GGG | 0.573648 | 4.1:-75469237 | None:intergenic |
| TCGATGCTCCACTGATTGGT+AGG | 0.574556 | 4.1:+75470185 | MS.gene87544:CDS |
| GCTGGGAATTGAATCATGTA+GGG | 0.576134 | 4.1:-75469760 | None:intergenic |
| ATGGGATGAATAGGTCTGTA+GGG | 0.581808 | 4.1:+75472154 | MS.gene87544:CDS |
| CCAGCAAGACGTCCTCCCCT+GGG | 0.581825 | 4.1:-75469180 | None:intergenic |
| ATCTCCTGAAGATATTCAGT+TGG | 0.582166 | 4.1:+75472077 | MS.gene87544:CDS |
| AGAGCTGAGATTATCTAATG+AGG | 0.582738 | 4.1:+75469463 | MS.gene87544:CDS |
| TGTCATGGGTGAACGTGCTG+AGG | 0.583339 | 4.1:+75470153 | MS.gene87544:CDS |
| GACCTATTCATCCCATGACC+AGG | 0.584806 | 4.1:-75472147 | None:intergenic |
| CAACCCCAAAAGTGCTGCAG+TGG | 0.586960 | 4.1:+75472758 | MS.gene87544:CDS |
| GATCTCTCTGATGGTGAAAG+TGG | 0.588196 | 4.1:+75472626 | MS.gene87544:CDS |
| CATAGGGAATGGAGACAGAC+AGG | 0.588526 | 4.1:+75469702 | MS.gene87544:intron |
| CAGACAGGTGGCCATCAGAC+CGG | 0.589553 | 4.1:+75469717 | MS.gene87544:CDS |
| GTTGAATTTCACAGGTGGAG+AGG | 0.592278 | 4.1:+75472396 | MS.gene87544:intron |
| TGGTTCAATTCCATACCCCA+GGG | 0.592703 | 4.1:+75469221 | MS.gene87544:CDS |
| CAGAAGAAGAAGATGGCTGG+TGG | 0.600522 | 4.1:-75469890 | None:intergenic |
| GGCTGGGAATTGAATCATGT+AGG | 0.601011 | 4.1:-75469761 | None:intergenic |
| CCATCAAAATAGAATTCCCA+GGG | 0.601242 | 4.1:+75469164 | MS.gene87544:CDS |
| GTAGGAAAGTGCGGACAAGA+TGG | 0.603782 | 4.1:+75470203 | MS.gene87544:CDS |
| GCACAGTTTGGTCTATGACA+TGG | 0.605238 | 4.1:+75470370 | MS.gene87544:CDS |
| CACTGATTGGTAGGAAAGTG+CGG | 0.605489 | 4.1:+75470194 | MS.gene87544:CDS |
| ACTTTCACCATCAGAGAGAT+CGG | 0.607034 | 4.1:-75472624 | None:intergenic |
| ATGGGTGAACGTGCTGAGGG+TGG | 0.608637 | 4.1:+75470157 | MS.gene87544:CDS |
| ATCACAGAATGGCATAGGAA+AGG | 0.610087 | 4.1:+75472248 | MS.gene87544:CDS |
| TCAAGCTGATGCCATTACTT+GGG | 0.611928 | 4.1:+75469326 | MS.gene87544:CDS |
| AACACCGAGAACTTCTAGGT+CGG | 0.612291 | 4.1:+75469486 | MS.gene87544:CDS |
| GGGGACTGCAAATGAAACAT+GGG | 0.614165 | 4.1:+75470391 | MS.gene87544:CDS |
| TAATTCGATGCAGGATCATG+AGG | 0.616423 | 4.1:+75472571 | MS.gene87544:intron |
| CTTCCACCAGGTCCTGAAGG+AGG | 0.616463 | 4.1:-75470109 | None:intergenic |
| AGACTTACCGATCTCTCTGA+TGG | 0.617087 | 4.1:+75472617 | MS.gene87544:CDS |
| CGCACTTTCCTACCAATCAG+TGG | 0.617421 | 4.1:-75470193 | None:intergenic |
| TGCTTCACTGAAGATACACC+AGG | 0.621212 | 4.1:-75470082 | None:intergenic |
| GTCATGGGTGAACGTGCTGA+GGG | 0.621893 | 4.1:+75470154 | MS.gene87544:CDS |
| TTAATGCGGATGACACAATA+CGG | 0.623917 | 4.1:+75469510 | MS.gene87544:CDS |
| GAAGAAGAAGATGGCTGGTG+GGG | 0.624129 | 4.1:-75469888 | None:intergenic |
| TCTTCTTCTTCTGCAAAACG+AGG | 0.624484 | 4.1:+75469900 | MS.gene87544:CDS |
| GTACCTAATAGAGCTGTCAT+GGG | 0.624974 | 4.1:+75470139 | MS.gene87544:CDS |
| TCCTGAAAGTAATCATCGCG+GGG | 0.625668 | 4.1:+75472113 | MS.gene87544:CDS |
| AGGTCTGTAGGGCGTGAGAG+TGG | 0.633155 | 4.1:+75472165 | MS.gene87544:CDS |
| ACTTCTAGGTCGGGTTAATG+CGG | 0.636230 | 4.1:+75469496 | MS.gene87544:CDS |
| TGGTATTCCGGCTTACAGAG+TGG | 0.641011 | 4.1:+75472778 | MS.gene87544:CDS |
| GGTTGGCGGAAGATCATCAT+CGG | 0.642391 | 4.1:-75469142 | None:intergenic |
| GGAATGGGTTAAACTGTCAG+AGG | 0.647279 | 4.1:+75470412 | MS.gene87544:CDS |
| AGAAGAAGAAGATGGCTGGT+GGG | 0.648969 | 4.1:-75469889 | None:intergenic |
| TTGACCAGTACTCAGCATGC+CGG | 0.650107 | 4.1:-75469736 | None:intergenic |
| TTCGATGCAGGATCATGAGG+AGG | 0.651732 | 4.1:+75472574 | MS.gene87544:intron |
| CACAGACACACTAATAAAGG+AGG | 0.653674 | 4.1:+75472296 | MS.gene87544:CDS |
| AGGAGTTGGAAGAGGTAGAG+GGG | 0.655509 | 4.1:+75472191 | MS.gene87544:CDS |
| CAAAATAGAATTCCCAGGGG+AGG | 0.658548 | 4.1:+75469168 | MS.gene87544:CDS |
| TTACGCCACCCGTACCATCA+CGG | 0.668133 | 4.1:+75469817 | MS.gene87544:CDS |
| GGCCCACCAAAAGACCGTGA+TGG | 0.676611 | 4.1:-75469831 | None:intergenic |
| AAAGACCGTGATGGTACGGG+TGG | 0.683601 | 4.1:-75469822 | None:intergenic |
| GGGGTGCAGTCACCGTTTGG+GGG | 0.692295 | 4.1:-75469869 | None:intergenic |
| ACAGTTTGGTCTATGACATG+GGG | 0.692814 | 4.1:+75470372 | MS.gene87544:CDS |
| GATCCTGAAAGTAATCATCG+CGG | 0.726995 | 4.1:+75472111 | MS.gene87544:CDS |
| CCTGAAAGTAATCATCGCGG+GGG | 0.730541 | 4.1:+75472114 | MS.gene87544:CDS |
| CAATTTCACCATACACCCTG+GGG | 0.738333 | 4.1:-75469236 | None:intergenic |
| AGGGAATGGAGACAGACAGG+TGG | 0.738677 | 4.1:+75469705 | MS.gene87544:intron |
| ATGCGGATGACACAATACGG+AGG | 0.776450 | 4.1:+75469513 | MS.gene87544:CDS |
| GATCTGGTCCTGGATCAAAG+GGG | 0.798736 | 4.1:+75469922 | MS.gene87544:CDS |
| CATCAAAATAGAATTCCCAG+GGG | 0.800693 | 4.1:+75469165 | MS.gene87544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTGAAAAAAATTATATTA+TGG | - | chr4.1:75471794-75471813 | None:intergenic | 10.0% |
| !! | AACTATTTCAAAGTTATATT+TGG | + | chr4.1:75470508-75470527 | MS.gene87544:intron | 15.0% |
| !! | GAGTTTACATATATTAATTA+GGG | + | chr4.1:75471648-75471667 | MS.gene87544:intron | 15.0% |
| !! | TGAGTTTACATATATTAATT+AGG | + | chr4.1:75471647-75471666 | MS.gene87544:intron | 15.0% |
| !!! | GTATATATTTTTTATTTGCA+GGG | + | chr4.1:75470049-75470068 | MS.gene87544:intron | 15.0% |
| !!! | TGTATATATTTTTTATTTGC+AGG | + | chr4.1:75470048-75470067 | MS.gene87544:intron | 15.0% |
| !! | AAAAAATCAAATCAAGTCAA+GGG | - | chr4.1:75469109-75469128 | None:intergenic | 20.0% |
| !! | AAATAGTCCATAATGATATT+CGG | + | chr4.1:75470556-75470575 | MS.gene87544:intron | 20.0% |
| !! | AAGTTATATTTGGTATCAAA+TGG | + | chr4.1:75470518-75470537 | MS.gene87544:intron | 20.0% |
| !! | ATACTATTTCAGATTTCAAA+AGG | - | chr4.1:75471483-75471502 | None:intergenic | 20.0% |
| !! | CATTAACTACTTTGTAAAAA+AGG | - | chr4.1:75470838-75470857 | None:intergenic | 20.0% |
| !! | GAATTATATATAGATAGATC+AGG | - | chr4.1:75472557-75472576 | None:intergenic | 20.0% |
| !! | TAAAAAATCAAATCAAGTCA+AGG | - | chr4.1:75469110-75469129 | None:intergenic | 20.0% |
| !! | TAAACCAAAGCAAAATAAAA+TGG | - | chr4.1:75471324-75471343 | None:intergenic | 20.0% |
| !! | TCAACAGAAACTTAAATATA+CGG | - | chr4.1:75472381-75472400 | None:intergenic | 20.0% |
| !! | TCTGATAAAAATATGAAACA+AGG | + | chr4.1:75469542-75469561 | MS.gene87544:intron | 20.0% |
| !! | TTGCTTTCATACAATATAAA+TGG | - | chr4.1:75471829-75471848 | None:intergenic | 20.0% |
| !!! | AATTCCATTTTATTTTGCTT+TGG | + | chr4.1:75471317-75471336 | MS.gene87544:intron | 20.0% |
| !!! | ATTTGATTTTTTATAATCGC+AGG | + | chr4.1:75469117-75469136 | MS.gene87544:intron | 20.0% |
| !!! | GAAATCTGAAATAGTATTAA+AGG | + | chr4.1:75471486-75471505 | MS.gene87544:intron | 20.0% |
| !!! | TAGATGTATAACTGATTTTT+AGG | + | chr4.1:75471268-75471287 | MS.gene87544:intron | 20.0% |
| !!! | TTAGTCTTAATGAAAAAGAT+TGG | - | chr4.1:75470897-75470916 | None:intergenic | 20.0% |
| !!! | TTAGTTGCATTAATTAGTTT+TGG | + | chr4.1:75472714-75472733 | MS.gene87544:intron | 20.0% |
| !!! | TTTGATTTTCTTGCAAAAAA+TGG | + | chr4.1:75472521-75472540 | MS.gene87544:intron | 20.0% |
| ! | AAGAAGACTAAACAATAACA+TGG | - | chr4.1:75472696-75472715 | None:intergenic | 25.0% |
| ! | AAGTAAGAGCTTAAAATACT+CGG | - | chr4.1:75471628-75471647 | None:intergenic | 25.0% |
| ! | AATAGTCCATAATGATATTC+GGG | + | chr4.1:75470557-75470576 | MS.gene87544:intron | 25.0% |
| ! | AATGTTCGATAATATCTAGA+TGG | + | chr4.1:75471961-75471980 | MS.gene87544:intron | 25.0% |
| ! | ACATATATTAATTAGGGATC+AGG | + | chr4.1:75471654-75471673 | MS.gene87544:intron | 25.0% |
| ! | AGTAAAATATACCCAAGTAA+TGG | - | chr4.1:75469340-75469359 | None:intergenic | 25.0% |
| ! | AGTGAATTGACAGAAAAATA+TGG | - | chr4.1:75470467-75470486 | None:intergenic | 25.0% |
| ! | ATATTGCAACCAATATTTCT+AGG | - | chr4.1:75469026-75469045 | None:intergenic | 25.0% |
| ! | ATATTTCAGCTACATATTAG+TGG | - | chr4.1:75470319-75470338 | None:intergenic | 25.0% |
| ! | ATCTATATATAATTCGATGC+AGG | + | chr4.1:75472562-75472581 | MS.gene87544:intron | 25.0% |
| ! | CATTTATACTTTAGATATGC+AGG | - | chr4.1:75470799-75470818 | None:intergenic | 25.0% |
| ! | TAGTATAGGTTGTGAAATAA+AGG | + | chr4.1:75470934-75470953 | MS.gene87544:intron | 25.0% |
| ! | TCATTAAGACTAATAACCAA+GGG | + | chr4.1:75470904-75470923 | MS.gene87544:intron | 25.0% |
| ! | TTAATTTATTTCCTGAACTG+TGG | + | chr4.1:75471890-75471909 | MS.gene87544:intron | 25.0% |
| ! | TTCATTAAGACTAATAACCA+AGG | + | chr4.1:75470903-75470922 | MS.gene87544:intron | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr4.1:75471141-75471160 | None:intergenic | 25.0% |
| ! | TTTCACTATCAAAATGGAAT+AGG | - | chr4.1:75472489-75472508 | None:intergenic | 25.0% |
| !!! | ATTCCATTTTGATAGTGAAA+AGG | + | chr4.1:75472489-75472508 | MS.gene87544:intron | 25.0% |
| !!! | TATATTCCTCTTACTTTTCA+GGG | + | chr4.1:75470344-75470363 | MS.gene87544:intron | 25.0% |
| !!! | TATTAAGTGCTGAATTAAGT+AGG | + | chr4.1:75471710-75471729 | MS.gene87544:intron | 25.0% |
| !!! | TTATATTCCTCTTACTTTTC+AGG | + | chr4.1:75470343-75470362 | MS.gene87544:intron | 25.0% |
| !!! | TTTTTTCAACTTAACGTTTG+TGG | + | chr4.1:75471803-75471822 | MS.gene87544:intron | 25.0% |
| !!! | TTTTTTTTCCACTGCATTAA+TGG | + | chr4.1:75471755-75471774 | MS.gene87544:intron | 25.0% |
| AAATGATGTATTTACAACCC+TGG | + | chr4.1:75470273-75470292 | MS.gene87544:intron | 30.0% | |
| AACAGATAACCAAATATTCC+AGG | - | chr4.1:75470294-75470313 | None:intergenic | 30.0% | |
| AAGTTTCTGTTGAATTTCAC+AGG | + | chr4.1:75472388-75472407 | MS.gene87544:intron | 30.0% | |
| ACAGATAACCAAATATTCCA+GGG | - | chr4.1:75470293-75470312 | None:intergenic | 30.0% | |
| AGGGTTGTAAATACATCATT+TGG | - | chr4.1:75470274-75470293 | None:intergenic | 30.0% | |
| AGTTATACATCTATGAAGCA+CGG | - | chr4.1:75471261-75471280 | None:intergenic | 30.0% | |
| ATTTACAACCCTGGAATATT+TGG | + | chr4.1:75470282-75470301 | MS.gene87544:intron | 30.0% | |
| CCAAGGGAAATATTTAGTAT+AGG | + | chr4.1:75470920-75470939 | MS.gene87544:intron | 30.0% | |
| CCTATACTAAATATTTCCCT+TGG | - | chr4.1:75470923-75470942 | None:intergenic | 30.0% | |
| CTCATTATATTCATTGCTCT+TGG | - | chr4.1:75471515-75471534 | None:intergenic | 30.0% | |
| CTGCTCAAATTGATGAATTT+GGG | - | chr4.1:75469271-75469290 | None:intergenic | 30.0% | |
| CTTTGTTGGATAATGACATA+GGG | + | chr4.1:75469686-75469705 | MS.gene87544:intron | 30.0% | |
| GAGCAATGAATATAATGAGT+AGG | + | chr4.1:75471516-75471535 | MS.gene87544:intron | 30.0% | |
| GTAGATTGAAGTCAAAATAG+TGG | - | chr4.1:75471681-75471700 | None:intergenic | 30.0% | |
| GTGTAGTATCTGAATATCAT+CGG | - | chr4.1:75472277-75472296 | None:intergenic | 30.0% | |
| TAATCAAACTTTCTTTCTCC+TGG | - | chr4.1:75469430-75469449 | None:intergenic | 30.0% | |
| TATGAAACAAGGTTTCTTGT+TGG | + | chr4.1:75469553-75469572 | MS.gene87544:intron | 30.0% | |
| TGTAGTATCTGAATATCATC+GGG | - | chr4.1:75472276-75472295 | None:intergenic | 30.0% | |
| TGTATACATTCTCTTAGCTT+TGG | + | chr4.1:75470009-75470028 | MS.gene87544:intron | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr4.1:75471172-75471191 | MS.gene87544:intron | 30.0% | |
| TTTGCTAATCAATGCTTTGT+TGG | + | chr4.1:75469672-75469691 | MS.gene87544:intron | 30.0% | |
| TTTGTAAAAAAGGATGCTTC+TGG | - | chr4.1:75470828-75470847 | None:intergenic | 30.0% | |
| ! | AAATGACATGTATTTTCTCC+AGG | + | chr4.1:75469409-75469428 | MS.gene87544:intron | 30.0% |
| ! | AGCTCATGAGTATTTCTATA+AGG | - | chr4.1:75472670-75472689 | None:intergenic | 30.0% |
| ! | ATAACAGCCTATATTTTGCA+AGG | - | chr4.1:75470965-75470984 | None:intergenic | 30.0% |
| ! | ATCAGTCTAGAGTATATATG+TGG | - | chr4.1:75469970-75469989 | None:intergenic | 30.0% |
| ! | CTCTTTTTGCCTAGAAATAT+TGG | + | chr4.1:75469014-75469033 | MS.gene87544:intron | 30.0% |
| ! | TATGTACCCAATACCATTTT+TGG | - | chr4.1:75470866-75470885 | None:intergenic | 30.0% |
| !! | ATGTACCCAATACCATTTTT+GGG | - | chr4.1:75470865-75470884 | None:intergenic | 30.0% |
| !! | CGAAAAAGTTTTATCGCTTT+GGG | + | chr4.1:75470689-75470708 | MS.gene87544:intron | 30.0% |
| !! | GAAAGCGAAGAAAGTATTAA+AGG | + | chr4.1:75472457-75472476 | MS.gene87544:CDS | 30.0% |
| !! | TCGAAAAAGTTTTATCGCTT+TGG | + | chr4.1:75470688-75470707 | MS.gene87544:intron | 30.0% |
| !!! | GATTTTTTGTCATCACAGAA+TGG | + | chr4.1:75472237-75472256 | MS.gene87544:CDS | 30.0% |
| !!! | GCATTAATTAGTTTTGGAAC+TGG | + | chr4.1:75472720-75472739 | MS.gene87544:intron | 30.0% |
| !!! | GTTGTTTTTGAGTATAAGCA+CGG | + | chr4.1:75471074-75471093 | MS.gene87544:intron | 30.0% |
| AAATCAAAGAACCACAGTTC+AGG | - | chr4.1:75471904-75471923 | None:intergenic | 35.0% | |
| AAGACGTATAATGCCTAACT+TGG | + | chr4.1:75471378-75471397 | MS.gene87544:intron | 35.0% | |
| AATAGAGATTGATTGCGTTG+TGG | + | chr4.1:75471008-75471027 | MS.gene87544:intron | 35.0% | |
| ACACACAGACACACTAATAA+AGG | + | chr4.1:75472293-75472312 | MS.gene87544:CDS | 35.0% | |
| AGACGTATAATGCCTAACTT+GGG | + | chr4.1:75471379-75471398 | MS.gene87544:intron | 35.0% | |
| AGAGCTGAGATTATCTAATG+AGG | + | chr4.1:75469463-75469482 | MS.gene87544:CDS | 35.0% | |
| AGGAACTAGAGATGTACTAA+AGG | + | chr4.1:75471536-75471555 | MS.gene87544:intron | 35.0% | |
| AGTATATATGTGGTACTCAC+AGG | - | chr4.1:75469960-75469979 | None:intergenic | 35.0% | |
| ATAGGTTGTGAAATAAAGGC+TGG | + | chr4.1:75470938-75470957 | MS.gene87544:intron | 35.0% | |
| ATATGCTCTTTCCTTGTATC+TGG | + | chr4.1:75471938-75471957 | MS.gene87544:intron | 35.0% | |
| ATCTCCTGAAGATATTCAGT+TGG | + | chr4.1:75472077-75472096 | MS.gene87544:CDS | 35.0% | |
| CACATTCCCGAATATCATTA+TGG | - | chr4.1:75470566-75470585 | None:intergenic | 35.0% | |
| CATAATGATATTCGGGAATG+TGG | + | chr4.1:75470564-75470583 | MS.gene87544:intron | 35.0% | |
| CATACCTAATGTTTGTGATC+AGG | + | chr4.1:75469372-75469391 | MS.gene87544:intron | 35.0% | |
| CATCAAAATAGAATTCCCAG+GGG | + | chr4.1:75469165-75469184 | MS.gene87544:CDS | 35.0% | |
| CCAAATTCATCAATTTGAGC+AGG | + | chr4.1:75469269-75469288 | MS.gene87544:CDS | 35.0% | |
| CCATCAAAATAGAATTCCCA+GGG | + | chr4.1:75469164-75469183 | MS.gene87544:CDS | 35.0% | |
| CCTGCTCAAATTGATGAATT+TGG | - | chr4.1:75469272-75469291 | None:intergenic | 35.0% | |
| CTCGTAAATGCTAATCGATT+TGG | - | chr4.1:75470738-75470757 | None:intergenic | 35.0% | |
| CTTAAAATACTCGGTACTTG+AGG | - | chr4.1:75471619-75471638 | None:intergenic | 35.0% | |
| CTTCGCTTTCTCAATTTCAA+GGG | - | chr4.1:75472447-75472466 | None:intergenic | 35.0% | |
| GAAACCTGATCACAAACATT+AGG | - | chr4.1:75469379-75469398 | None:intergenic | 35.0% | |
| GGTGTATGGTGAAATTGATA+TGG | + | chr4.1:75469242-75469261 | MS.gene87544:CDS | 35.0% | |
| TATCGAACATTCCAGATACA+AGG | - | chr4.1:75471952-75471971 | None:intergenic | 35.0% | |
| TCAAAAACAACACGAGCTTT+CGG | - | chr4.1:75471065-75471084 | None:intergenic | 35.0% | |
| TCATAGAAGTTATTGTCGTC+AGG | - | chr4.1:75470229-75470248 | None:intergenic | 35.0% | |
| TCTACCAACTGAATATCTTC+AGG | - | chr4.1:75472084-75472103 | None:intergenic | 35.0% | |
| TCTTCGCTTTCTCAATTTCA+AGG | - | chr4.1:75472448-75472467 | None:intergenic | 35.0% | |
| TCTTTATCCTAATGCGTGTT+TGG | - | chr4.1:75471362-75471381 | None:intergenic | 35.0% | |
| TGCAAATGAAACATGGGAAT+GGG | + | chr4.1:75470397-75470416 | MS.gene87544:CDS | 35.0% | |
| TTAATGCGGATGACACAATA+CGG | + | chr4.1:75469510-75469529 | MS.gene87544:CDS | 35.0% | |
| TTCGCTTTCTCAATTTCAAG+GGG | - | chr4.1:75472446-75472465 | None:intergenic | 35.0% | |
| TTGGATAATGACATAGGGAA+TGG | + | chr4.1:75469691-75469710 | MS.gene87544:intron | 35.0% | |
| TTTCTGTTGAATTTCACAGG+TGG | + | chr4.1:75472391-75472410 | MS.gene87544:intron | 35.0% | |
| TTTGAGTATAAGCACGGATA+CGG | + | chr4.1:75471080-75471099 | MS.gene87544:intron | 35.0% | |
| ! | AAAGAGCATATCTGCAATCT+TGG | - | chr4.1:75471929-75471948 | None:intergenic | 35.0% |
| ! | AAGAGCATATCTGCAATCTT+GGG | - | chr4.1:75471928-75471947 | None:intergenic | 35.0% |
| ! | GCACCTTTTCACTATCAAAA+TGG | - | chr4.1:75472495-75472514 | None:intergenic | 35.0% |
| ! | GCTTTGTTGGATAATGACAT+AGG | + | chr4.1:75469685-75469704 | MS.gene87544:intron | 35.0% |
| ! | TCAATCTCTATTGATGACTC+CGG | - | chr4.1:75471000-75471019 | None:intergenic | 35.0% |
| ! | TCTTTTCTAGATTGACCCTT+TGG | - | chr4.1:75472219-75472238 | None:intergenic | 35.0% |
| !! | ACATTCTCTTAGCTTTGGTT+TGG | + | chr4.1:75470014-75470033 | MS.gene87544:intron | 35.0% |
| !! | AGATATTCAGTTGGTAGAAG+AGG | + | chr4.1:75472086-75472105 | MS.gene87544:CDS | 35.0% |
| !! | TAAATGCTAATCGATTTGGC+AGG | - | chr4.1:75470734-75470753 | None:intergenic | 35.0% |
| !! | TGTACCCAATACCATTTTTG+GGG | - | chr4.1:75470864-75470883 | None:intergenic | 35.0% |
| !!! | ATTCTATTTTGATGGGTTGG+CGG | - | chr4.1:75469159-75469178 | None:intergenic | 35.0% |
| !!! | CCTGGGAATTCTATTTTGAT+GGG | - | chr4.1:75469166-75469185 | None:intergenic | 35.0% |
| !!! | GGAATTCTATTTTGATGGGT+TGG | - | chr4.1:75469162-75469181 | None:intergenic | 35.0% |
| ACAGTTTGGTCTATGACATG+GGG | + | chr4.1:75470372-75470391 | MS.gene87544:CDS | 40.0% | |
| ACTTTCACCATCAGAGAGAT+CGG | - | chr4.1:75472627-75472646 | None:intergenic | 40.0% | |
| AGACACACTAATAAAGGAGG+TGG | + | chr4.1:75472299-75472318 | MS.gene87544:intron | 40.0% | |
| AGGTGTACTAATGTGACAAC+TGG | - | chr4.1:75470779-75470798 | None:intergenic | 40.0% | |
| AGTACCTAATAGAGCTGTCA+TGG | + | chr4.1:75470138-75470157 | MS.gene87544:CDS | 40.0% | |
| AGTTAATGACCCCCCAAAAA+TGG | + | chr4.1:75470850-75470869 | MS.gene87544:intron | 40.0% | |
| ATCAATTTCACCATACACCC+TGG | - | chr4.1:75469241-75469260 | None:intergenic | 40.0% | |
| ATCACAGAATGGCATAGGAA+AGG | + | chr4.1:75472248-75472267 | MS.gene87544:CDS | 40.0% | |
| ATCCTAATGCGTGTTTGGAT+TGG | - | chr4.1:75471357-75471376 | None:intergenic | 40.0% | |
| ATCCTGAAAGTAATCATCGC+GGG | + | chr4.1:75472112-75472131 | MS.gene87544:CDS | 40.0% | |
| ATGACACAATACGGAGGATA+AGG | + | chr4.1:75469519-75469538 | MS.gene87544:CDS | 40.0% | |
| ATGGGATGAATAGGTCTGTA+GGG | + | chr4.1:75472154-75472173 | MS.gene87544:CDS | 40.0% | |
| ATGGTGAAAGTGGTACTTCT+CGG | + | chr4.1:75472636-75472655 | MS.gene87544:intron | 40.0% | |
| CACAGACACACTAATAAAGG+AGG | + | chr4.1:75472296-75472315 | MS.gene87544:CDS | 40.0% | |
| CACAGTTTGGTCTATGACAT+GGG | + | chr4.1:75470371-75470390 | MS.gene87544:CDS | 40.0% | |
| CCCATCAAAATAGAATTCCC+AGG | + | chr4.1:75469163-75469182 | MS.gene87544:CDS | 40.0% | |
| CTGCAAATGAAACATGGGAA+TGG | + | chr4.1:75470396-75470415 | MS.gene87544:CDS | 40.0% | |
| GAAAAATATGGCACCACAAC+AGG | - | chr4.1:75470455-75470474 | None:intergenic | 40.0% | |
| GACAACGATATTGTTGATGC+TGG | + | chr4.1:75471580-75471599 | MS.gene87544:intron | 40.0% | |
| GACGTATAATGCCTAACTTG+GGG | + | chr4.1:75471380-75471399 | MS.gene87544:intron | 40.0% | |
| GATCCTGAAAGTAATCATCG+CGG | + | chr4.1:75472111-75472130 | MS.gene87544:CDS | 40.0% | |
| GCTGAATTAAGTAGGCAAAC+AGG | + | chr4.1:75471718-75471737 | MS.gene87544:intron | 40.0% | |
| GCTGGGAATTGAATCATGTA+GGG | - | chr4.1:75469763-75469782 | None:intergenic | 40.0% | |
| GTACCTAATAGAGCTGTCAT+GGG | + | chr4.1:75470139-75470158 | MS.gene87544:CDS | 40.0% | |
| TAATTCGATGCAGGATCATG+AGG | + | chr4.1:75472571-75472590 | MS.gene87544:intron | 40.0% | |
| TCAAGCTGATGCCATTACTT+GGG | + | chr4.1:75469326-75469345 | MS.gene87544:CDS | 40.0% | |
| TCAATTTCACCATACACCCT+GGG | - | chr4.1:75469240-75469259 | None:intergenic | 40.0% | |
| TCTGATGCATTATCCTGTTG+TGG | + | chr4.1:75470439-75470458 | MS.gene87544:intron | 40.0% | |
| TCTTCTTCTTCTGCAAAACG+AGG | + | chr4.1:75469900-75469919 | MS.gene87544:CDS | 40.0% | |
| TGACTCTTCCATTAATGCAG+TGG | - | chr4.1:75471766-75471785 | None:intergenic | 40.0% | |
| TTCTCAATTTCAAGGGGATC+AGG | - | chr4.1:75472440-75472459 | None:intergenic | 40.0% | |
| TTGAATTTCACAGGTGGAGA+GGG | + | chr4.1:75472397-75472416 | MS.gene87544:intron | 40.0% | |
| TTGCAGGGTCAAATATTACC+TGG | + | chr4.1:75470064-75470083 | MS.gene87544:intron | 40.0% | |
| TTGTCATCACAGAATGGCAT+AGG | + | chr4.1:75472243-75472262 | MS.gene87544:CDS | 40.0% | |
| ! | AATACCACTGCAGCACTTTT+GGG | - | chr4.1:75472765-75472784 | None:intergenic | 40.0% |
| ! | CGTTTTGCAGAAGAAGAAGA+TGG | - | chr4.1:75469900-75469919 | None:intergenic | 40.0% |
| !! | CCCTGGGAATTCTATTTTGA+TGG | - | chr4.1:75469167-75469186 | None:intergenic | 40.0% |
| !! | GTACCCAATACCATTTTTGG+GGG | - | chr4.1:75470863-75470882 | None:intergenic | 40.0% |
| !! | TACCCAATACCATTTTTGGG+GGG | - | chr4.1:75470862-75470881 | None:intergenic | 40.0% |
| !! | TATTCAGTTGGTAGAAGAGG+AGG | + | chr4.1:75472089-75472108 | MS.gene87544:CDS | 40.0% |
| !! | TTCCTCTTACTTTTCAGGGA+CGG | + | chr4.1:75470348-75470367 | MS.gene87544:intron | 40.0% |
| AACACCGAGAACTTCTAGGT+CGG | + | chr4.1:75469486-75469505 | MS.gene87544:CDS | 45.0% | |
| ACCAAAAGACCGTGATGGTA+CGG | - | chr4.1:75469829-75469848 | None:intergenic | 45.0% | |
| ACTTCTAGGTCGGGTTAATG+CGG | + | chr4.1:75469496-75469515 | MS.gene87544:CDS | 45.0% | |
| AGAAGAAGAAGATGGCTGGT+GGG | - | chr4.1:75469892-75469911 | None:intergenic | 45.0% | |
| AGACTTACCGATCTCTCTGA+TGG | + | chr4.1:75472617-75472636 | MS.gene87544:CDS | 45.0% | |
| CAAAATAGAATTCCCAGGGG+AGG | + | chr4.1:75469168-75469187 | MS.gene87544:CDS | 45.0% | |
| CAATTTCACCATACACCCTG+GGG | - | chr4.1:75469239-75469258 | None:intergenic | 45.0% | |
| CACCAATCCAAACACGCATT+AGG | + | chr4.1:75471352-75471371 | MS.gene87544:intron | 45.0% | |
| CATGGGATGAATAGGTCTGT+AGG | + | chr4.1:75472153-75472172 | MS.gene87544:CDS | 45.0% | |
| CTCAAGCTGATGCCATTACT+TGG | + | chr4.1:75469325-75469344 | MS.gene87544:CDS | 45.0% | |
| CTGTTATGCTAGTTCGAGAC+CGG | + | chr4.1:75470978-75470997 | MS.gene87544:intron | 45.0% | |
| GACCCCCCAAAAATGGTATT+GGG | + | chr4.1:75470857-75470876 | MS.gene87544:intron | 45.0% | |
| GCACAGTTTGGTCTATGACA+TGG | + | chr4.1:75470370-75470389 | MS.gene87544:CDS | 45.0% | |
| GGCTGGACCTTGCAAAATAT+AGG | + | chr4.1:75470955-75470974 | MS.gene87544:intron | 45.0% | |
| GGCTGGGAATTGAATCATGT+AGG | - | chr4.1:75469764-75469783 | None:intergenic | 45.0% | |
| GGGGACTGCAAATGAAACAT+GGG | + | chr4.1:75470391-75470410 | MS.gene87544:CDS | 45.0% | |
| GTTGAATTTCACAGGTGGAG+AGG | + | chr4.1:75472396-75472415 | MS.gene87544:intron | 45.0% | |
| TAACCCGACCTAGAAGTTCT+CGG | - | chr4.1:75469493-75469512 | None:intergenic | 45.0% | |
| TATAAGCACGGATACGGACA+CGG | + | chr4.1:75471086-75471105 | MS.gene87544:intron | 45.0% | |
| TCACCCATGACAGCTCTATT+AGG | - | chr4.1:75470145-75470164 | None:intergenic | 45.0% | |
| TCATTCGATGCTCCACTGAT+TGG | + | chr4.1:75470181-75470200 | MS.gene87544:CDS | 45.0% | |
| TCCTGAAAGTAATCATCGCG+GGG | + | chr4.1:75472113-75472132 | MS.gene87544:CDS | 45.0% | |
| TCCTTCATTTCACCCCCAAA+CGG | + | chr4.1:75469857-75469876 | MS.gene87544:CDS | 45.0% | |
| TCTTCTGCAAAACGAGGATC+TGG | + | chr4.1:75469906-75469925 | MS.gene87544:CDS | 45.0% | |
| TGACCCCCCAAAAATGGTAT+TGG | + | chr4.1:75470856-75470875 | MS.gene87544:intron | 45.0% | |
| TGCTTCACTGAAGATACACC+AGG | - | chr4.1:75470085-75470104 | None:intergenic | 45.0% | |
| TGGGGACTGCAAATGAAACA+TGG | + | chr4.1:75470390-75470409 | MS.gene87544:CDS | 45.0% | |
| TGGTTCAATTCCATACCCCA+GGG | + | chr4.1:75469221-75469240 | MS.gene87544:CDS | 45.0% | |
| TTGCAGAAGAAGAAGATGGC+TGG | - | chr4.1:75469896-75469915 | None:intergenic | 45.0% | |
| TTGCGAGATGCAGAAACTGT+CGG | - | chr4.1:75469786-75469805 | None:intergenic | 45.0% | |
| TTGGTTCAATTCCATACCCC+AGG | + | chr4.1:75469220-75469239 | MS.gene87544:CDS | 45.0% | |
| ! | ATACCACTGCAGCACTTTTG+GGG | - | chr4.1:75472764-75472783 | None:intergenic | 45.0% |
| ! | CACTGATTGGTAGGAAAGTG+CGG | + | chr4.1:75470194-75470213 | MS.gene87544:CDS | 45.0% |
| ! | CTAATGCGTGTTTGGATTGG+TGG | - | chr4.1:75471354-75471373 | None:intergenic | 45.0% |
| ! | GAATACCACTGCAGCACTTT+TGG | - | chr4.1:75472766-75472785 | None:intergenic | 45.0% |
| ! | GATCTCTCTGATGGTGAAAG+TGG | + | chr4.1:75472626-75472645 | MS.gene87544:CDS | 45.0% |
| ! | GGCATCAGCTTGAGCTTTAA+AGG | - | chr4.1:75469319-75469338 | None:intergenic | 45.0% |
| ! | TACCATCACGGTCTTTTGGT+GGG | + | chr4.1:75469829-75469848 | MS.gene87544:CDS | 45.0% |
| !! | AAAGTGCTGCAGTGGTATTC+CGG | + | chr4.1:75472766-75472785 | MS.gene87544:CDS | 45.0% |
| !! | CGTGTTTGGATTGGTGGAAA+GGG | - | chr4.1:75471348-75471367 | None:intergenic | 45.0% |
| !! | GGAATGGGTTAAACTGTCAG+AGG | + | chr4.1:75470412-75470431 | MS.gene87544:CDS | 45.0% |
| !!! | GTTTTGGAACTGGTACAGTG+TGG | + | chr4.1:75472730-75472749 | MS.gene87544:intron | 45.0% |
| AAGAGGTAGAGGGGTTCCAA+AGG | + | chr4.1:75472200-75472219 | MS.gene87544:CDS | 50.0% | |
| ACACCGAGAACTTCTAGGTC+GGG | + | chr4.1:75469487-75469506 | MS.gene87544:CDS | 50.0% | |
| ACCGTTTGGGGGTGAAATGA+AGG | - | chr4.1:75469861-75469880 | None:intergenic | 50.0% | |
| ACTGGGACATGCCTAATCTG+AGG | + | chr4.1:75471230-75471249 | MS.gene87544:intron | 50.0% | |
| AGAGGTAGAGGGGTTCCAAA+GGG | + | chr4.1:75472201-75472220 | MS.gene87544:CDS | 50.0% | |
| AGGAGTTGGAAGAGGTAGAG+GGG | + | chr4.1:75472191-75472210 | MS.gene87544:CDS | 50.0% | |
| AGGATCTGGTCCTGGATCAA+AGG | + | chr4.1:75469920-75469939 | MS.gene87544:CDS | 50.0% | |
| ATGCCTAACTTGGGGCTGTT+AGG | + | chr4.1:75471388-75471407 | MS.gene87544:intron | 50.0% | |
| ATGCGGATGACACAATACGG+AGG | + | chr4.1:75469513-75469532 | MS.gene87544:CDS | 50.0% | |
| ATTCCATACCCCAGGGTGTA+TGG | + | chr4.1:75469228-75469247 | MS.gene87544:CDS | 50.0% | |
| CAGAAGAAGAAGATGGCTGG+TGG | - | chr4.1:75469893-75469912 | None:intergenic | 50.0% | |
| CAGGAGTTGGAAGAGGTAGA+GGG | + | chr4.1:75472190-75472209 | MS.gene87544:CDS | 50.0% | |
| CATAGGGAATGGAGACAGAC+AGG | + | chr4.1:75469702-75469721 | MS.gene87544:intron | 50.0% | |
| CCAAAAGACCGTGATGGTAC+GGG | - | chr4.1:75469828-75469847 | None:intergenic | 50.0% | |
| CCTGAAAGTAATCATCGCGG+GGG | + | chr4.1:75472114-75472133 | MS.gene87544:CDS | 50.0% | |
| CGCACTTTCCTACCAATCAG+TGG | - | chr4.1:75470196-75470215 | None:intergenic | 50.0% | |
| GAAGAAGAAGATGGCTGGTG+GGG | - | chr4.1:75469891-75469910 | None:intergenic | 50.0% | |
| GACCTATTCATCCCATGACC+AGG | - | chr4.1:75472150-75472169 | None:intergenic | 50.0% | |
| GAGGAACACCGAGAACTTCT+AGG | + | chr4.1:75469482-75469501 | MS.gene87544:CDS | 50.0% | |
| GATCTGGTCCTGGATCAAAG+GGG | + | chr4.1:75469922-75469941 | MS.gene87544:CDS | 50.0% | |
| GGATCTGGTCCTGGATCAAA+GGG | + | chr4.1:75469921-75469940 | MS.gene87544:CDS | 50.0% | |
| GGCTGTTAGGCACTAACACA+GGG | + | chr4.1:75471401-75471420 | MS.gene87544:intron | 50.0% | |
| GGGAATGGAAGATCTGCTGT+TGG | + | chr4.1:75469201-75469220 | MS.gene87544:CDS | 50.0% | |
| GGTACTTGATTCCTTCCACC+AGG | - | chr4.1:75470124-75470143 | None:intergenic | 50.0% | |
| GGTTGGCGGAAGATCATCAT+CGG | - | chr4.1:75469145-75469164 | None:intergenic | 50.0% | |
| GTCACTTCAGTGTGTTGCGA+TGG | + | chr4.1:75471030-75471049 | MS.gene87544:intron | 50.0% | |
| GTCCTGGTCATGGGATGAAT+AGG | + | chr4.1:75472145-75472164 | MS.gene87544:CDS | 50.0% | |
| GTGAAGCAGTTTCCTCCTTC+AGG | + | chr4.1:75470097-75470116 | MS.gene87544:CDS | 50.0% | |
| TGCCGTCCCTGAAAAGTAAG+AGG | - | chr4.1:75470353-75470372 | None:intergenic | 50.0% | |
| TGCGAGATGCAGAAACTGTC+GGG | - | chr4.1:75469785-75469804 | None:intergenic | 50.0% | |
| TGCTTCTTCCCCTTTGATCC+AGG | - | chr4.1:75469933-75469952 | None:intergenic | 50.0% | |
| TGGGGGTGAAATGAAGGAGA+AGG | - | chr4.1:75469855-75469874 | None:intergenic | 50.0% | |
| TGGTATTCCGGCTTACAGAG+TGG | + | chr4.1:75472778-75472797 | MS.gene87544:CDS | 50.0% | |
| TTCGATGCAGGATCATGAGG+AGG | + | chr4.1:75472574-75472593 | MS.gene87544:intron | 50.0% | |
| TTGACCAGTACTCAGCATGC+CGG | - | chr4.1:75469739-75469758 | None:intergenic | 50.0% | |
| ! | AGTAATCATCGCGGGGGTTT+TGG | + | chr4.1:75472120-75472139 | MS.gene87544:CDS | 50.0% |
| ! | GTAATCATCGCGGGGGTTTT+GGG | + | chr4.1:75472121-75472140 | MS.gene87544:CDS | 50.0% |
| ! | GTACCATCACGGTCTTTTGG+TGG | + | chr4.1:75469828-75469847 | MS.gene87544:CDS | 50.0% |
| ! | GTAGGAAAGTGCGGACAAGA+TGG | + | chr4.1:75470203-75470222 | MS.gene87544:CDS | 50.0% |
| ! | TAATCATCGCGGGGGTTTTG+GGG | + | chr4.1:75472122-75472141 | MS.gene87544:CDS | 50.0% |
| ! | TCGATGCTCCACTGATTGGT+AGG | + | chr4.1:75470185-75470204 | MS.gene87544:CDS | 50.0% |
| !! | GCGTGTTTGGATTGGTGGAA+AGG | - | chr4.1:75471349-75471368 | None:intergenic | 50.0% |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | + | chr4.1:75471183-75471202 | MS.gene87544:intron | 50.0% |
| !! | TTTTCAGGGACGGCACAGTT+TGG | + | chr4.1:75470358-75470377 | MS.gene87544:intron | 50.0% |
| AAAGACCGTGATGGTACGGG+TGG | - | chr4.1:75469825-75469844 | None:intergenic | 55.0% | |
| ACACGACACGTGTCTGACAC+TGG | + | chr4.1:75471212-75471231 | MS.gene87544:intron | 55.0% | |
| AGATGCAGAAACTGTCGGGC+TGG | - | chr4.1:75469781-75469800 | None:intergenic | 55.0% | |
| AGGGAATGGAGACAGACAGG+TGG | + | chr4.1:75469705-75469724 | MS.gene87544:intron | 55.0% | |
| AGTGGTCCAGGAGTTGGAAG+AGG | + | chr4.1:75472183-75472202 | MS.gene87544:CDS | 55.0% | |
| CACGACACGTGTCTGACACT+GGG | + | chr4.1:75471213-75471232 | MS.gene87544:intron | 55.0% | |
| CAGTTTCCTCCTTCAGGACC+TGG | + | chr4.1:75470103-75470122 | MS.gene87544:CDS | 55.0% | |
| CCAGGAGTTGGAAGAGGTAG+AGG | + | chr4.1:75472189-75472208 | MS.gene87544:CDS | 55.0% | |
| CCCCCGCGATGATTACTTTC+AGG | - | chr4.1:75472117-75472136 | None:intergenic | 55.0% | |
| CCTCTACCTCTTCCAACTCC+TGG | - | chr4.1:75472192-75472211 | None:intergenic | 55.0% | |
| GATGCAGAAACTGTCGGGCT+GGG | - | chr4.1:75469780-75469799 | None:intergenic | 55.0% | |
| GCAAAACGAGGATCTGGTCC+TGG | + | chr4.1:75469912-75469931 | MS.gene87544:CDS | 55.0% | |
| GCACGGACACTCCTCAGATT+AGG | - | chr4.1:75471244-75471263 | None:intergenic | 55.0% | |
| GGAGCAACCACTCTGTAAGC+CGG | - | chr4.1:75472788-75472807 | None:intergenic | 55.0% | |
| GGGCTGTTAGGCACTAACAC+AGG | + | chr4.1:75471400-75471419 | MS.gene87544:intron | 55.0% | |
| GTCATGGGTGAACGTGCTGA+GGG | + | chr4.1:75470154-75470173 | MS.gene87544:CDS | 55.0% | |
| GTGCCTAACAGCCCCAAGTT+AGG | - | chr4.1:75471394-75471413 | None:intergenic | 55.0% | |
| TACTCAGCATGCCGGTCTGA+TGG | - | chr4.1:75469731-75469750 | None:intergenic | 55.0% | |
| TCACCATACACCCTGGGGTA+TGG | - | chr4.1:75469234-75469253 | None:intergenic | 55.0% | |
| TGTCATGGGTGAACGTGCTG+AGG | + | chr4.1:75470153-75470172 | MS.gene87544:CDS | 55.0% | |
| TTACGCCACCCGTACCATCA+CGG | + | chr4.1:75469817-75469836 | MS.gene87544:CDS | 55.0% | |
| TTCCTTCCACCAGGTCCTGA+AGG | - | chr4.1:75470115-75470134 | None:intergenic | 55.0% | |
| TTTCCTCCTTCAGGACCTGG+TGG | + | chr4.1:75470106-75470125 | MS.gene87544:CDS | 55.0% | |
| ! | CCCGTACCATCACGGTCTTT+TGG | + | chr4.1:75469825-75469844 | MS.gene87544:CDS | 55.0% |
| !! | AATCATCGCGGGGGTTTTGG+GGG | + | chr4.1:75472123-75472142 | MS.gene87544:CDS | 55.0% |
| !! | CAACCCCAAAAGTGCTGCAG+TGG | + | chr4.1:75472758-75472777 | MS.gene87544:CDS | 55.0% |
| !!! | GTTTTGGGGGTCCTGGTCAT+GGG | + | chr4.1:75472136-75472155 | MS.gene87544:CDS | 55.0% |
| ACGGATACGGACACGGACAC+CGG | + | chr4.1:75471093-75471112 | MS.gene87544:intron | 60.0% | |
| AGGTCTGTAGGGCGTGAGAG+TGG | + | chr4.1:75472165-75472184 | MS.gene87544:CDS | 60.0% | |
| ATGGGTGAACGTGCTGAGGG+TGG | + | chr4.1:75470157-75470176 | MS.gene87544:CDS | 60.0% | |
| CAGACAGGTGGCCATCAGAC+CGG | + | chr4.1:75469717-75469736 | MS.gene87544:CDS | 60.0% | |
| CAGACCGGCATGCTGAGTAC+TGG | + | chr4.1:75469732-75469751 | MS.gene87544:CDS | 60.0% | |
| CGTGAGAGTGGTCCAGGAGT+TGG | + | chr4.1:75472177-75472196 | MS.gene87544:CDS | 60.0% | |
| CTCCTTCAGGACCTGGTGGA+AGG | + | chr4.1:75470110-75470129 | MS.gene87544:CDS | 60.0% | |
| CTTCCACCAGGTCCTGAAGG+AGG | - | chr4.1:75470112-75470131 | None:intergenic | 60.0% | |
| GGAGGACGTCTTGCTGGGAA+TGG | + | chr4.1:75469186-75469205 | MS.gene87544:CDS | 60.0% | |
| GGCCCACCAAAAGACCGTGA+TGG | - | chr4.1:75469834-75469853 | None:intergenic | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | - | chr4.1:75471115-75471134 | None:intergenic | 60.0% | |
| GTGGGGTGCAGTCACCGTTT+GGG | - | chr4.1:75469874-75469893 | None:intergenic | 60.0% | |
| TGGGGTGCAGTCACCGTTTG+GGG | - | chr4.1:75469873-75469892 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+CGG | + | chr4.1:75471189-75471208 | MS.gene87544:intron | 60.0% |
| !!! | GGTTTTGGGGGTCCTGGTCA+TGG | + | chr4.1:75472135-75472154 | MS.gene87544:CDS | 60.0% |
| CACGGACACCGGACACGACA+CGG | + | chr4.1:75471104-75471123 | MS.gene87544:intron | 65.0% | |
| CCAGCAAGACGTCCTCCCCT+GGG | - | chr4.1:75469183-75469202 | None:intergenic | 65.0% | |
| CCAGGGGAGGACGTCTTGCT+GGG | + | chr4.1:75469181-75469200 | MS.gene87544:CDS | 65.0% | |
| GGGGTGCAGTCACCGTTTGG+GGG | - | chr4.1:75469872-75469891 | None:intergenic | 65.0% | |
| GGTGGGGTGCAGTCACCGTT+TGG | - | chr4.1:75469875-75469894 | None:intergenic | 65.0% | |
| GTAGGGCGTGAGAGTGGTCC+AGG | + | chr4.1:75472171-75472190 | MS.gene87544:CDS | 65.0% | |
| CCCAGCAAGACGTCCTCCCC+TGG | - | chr4.1:75469184-75469203 | None:intergenic | 70.0% | |
| CCCAGGGGAGGACGTCTTGC+TGG | + | chr4.1:75469180-75469199 | MS.gene87544:CDS | 70.0% | |
| !!! | CGCGGGGGTTTTGGGGGTCC+TGG | + | chr4.1:75472129-75472148 | MS.gene87544:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 75468974 | 75472818 | 75468974 | ID=MS.gene87544 |
| chr4.1 | mRNA | 75468974 | 75472818 | 75468974 | ID=MS.gene87544.t1;Parent=MS.gene87544 |
| chr4.1 | exon | 75468974 | 75468977 | 75468974 | ID=MS.gene87544.t1.exon1;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75468974 | 75468977 | 75468974 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75469139 | 75469347 | 75469139 | ID=MS.gene87544.t1.exon2;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75469139 | 75469347 | 75469139 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75469431 | 75469540 | 75469431 | ID=MS.gene87544.t1.exon3;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75469431 | 75469540 | 75469431 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75469707 | 75469959 | 75469707 | ID=MS.gene87544.t1.exon4;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75469707 | 75469959 | 75469707 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75470070 | 75470279 | 75470070 | ID=MS.gene87544.t1.exon5;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75470070 | 75470279 | 75470070 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75470365 | 75470433 | 75470365 | ID=MS.gene87544.t1.exon6;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75470365 | 75470433 | 75470365 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75472075 | 75472317 | 75472075 | ID=MS.gene87544.t1.exon7;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75472075 | 75472317 | 75472075 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75472410 | 75472478 | 75472410 | ID=MS.gene87544.t1.exon8;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75472410 | 75472478 | 75472410 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75472584 | 75472647 | 75472584 | ID=MS.gene87544.t1.exon9;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75472584 | 75472647 | 75472584 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| chr4.1 | exon | 75472748 | 75472818 | 75472748 | ID=MS.gene87544.t1.exon10;Parent=MS.gene87544.t1 |
| chr4.1 | CDS | 75472748 | 75472818 | 75472748 | ID=cds.MS.gene87544.t1;Parent=MS.gene87544.t1 |
| Gene Sequence |
| Protein sequence |
