Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88041.t1 | XP_024638788.1 | 96.7 | 478 | 14 | 2 | 15 | 491 | 5 | 481 | 3.60E-257 | 897.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88041.t1 | F4I316 | 59.2 | 346 | 129 | 4 | 125 | 459 | 216 | 560 | 2.5e-102 | 374.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88041.t1 | I3S0K2 | 93.9 | 491 | 29 | 1 | 1 | 491 | 37 | 526 | 2.2e-256 | 894.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene88041 | 0.814517 | 1.48E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene88041 | 0.820437 | 6.86E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene88041 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene88041 | 0.807597 | 4.68E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene88041 | 0.819714 | 1.00E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene88041 | 0.822989 | 1.76E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene88041 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene88041 | 0.839435 | 1.59E-57 | -1.69E-46 |
| MS.gene05188 | MS.gene88041 | 0.808293 | 3.33E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene88041 | 0.819413 | 1.18E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene88041 | 0.822219 | 2.66E-53 | -1.69E-46 |
| MS.gene053786 | MS.gene88041 | 0.825731 | 4.00E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene88041 | 0.804758 | 1.85E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene88041 | 0.813155 | 2.95E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene88041 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene88041 | 0.813339 | 2.69E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene88041 | 0.823489 | 1.35E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene88041 | 0.81882 | 1.61E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene88041 | 0.808583 | 2.88E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene88041 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene88041 | 0.820907 | 5.35E-53 | -1.69E-46 |
| MS.gene060932 | MS.gene88041 | 0.813319 | 2.72E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene88041 | 0.839629 | 1.41E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene88041 | 0.800811 | 1.21E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88041.t1 | MTR_4g030960 | 93.686 | 491 | 30 | 1 | 1 | 491 | 37 | 526 | 0.0 | 933 |
| MS.gene88041.t1 | MTR_1g069420 | 84.454 | 476 | 73 | 1 | 17 | 491 | 42 | 517 | 0.0 | 801 |
| MS.gene88041.t1 | MTR_3g006320 | 63.002 | 473 | 159 | 7 | 20 | 491 | 52 | 509 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88041.t1 | AT1G71360 | 52.672 | 393 | 181 | 3 | 93 | 480 | 125 | 517 | 1.91e-135 | 404 |
| MS.gene88041.t1 | AT1G71360 | 52.538 | 394 | 182 | 3 | 92 | 480 | 150 | 543 | 4.16e-135 | 404 |
| MS.gene88041.t1 | AT1G22882 | 55.556 | 378 | 132 | 4 | 122 | 476 | 213 | 577 | 4.29e-134 | 402 |
| MS.gene88041.t1 | AT4G23950 | 44.838 | 339 | 152 | 5 | 163 | 491 | 170 | 483 | 1.69e-85 | 274 |
| MS.gene88041.t1 | AT4G23950 | 44.706 | 340 | 152 | 6 | 163 | 491 | 170 | 484 | 8.93e-84 | 270 |
Find 94 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTATCTCACCCATTT+TGG | 0.194693 | 4.3:+69505301 | None:intergenic |
| AGACGTAAATTTATTTGTTT+TGG | 0.203943 | 4.3:-69504909 | MS.gene88041:CDS |
| TTGTTCTTAAAGAGCCAAAA+TGG | 0.262822 | 4.3:-69505315 | MS.gene88041:CDS |
| ATCCCTGCTTAATATATTAG+AGG | 0.264131 | 4.3:+69505558 | None:intergenic |
| GGCTTTGAAGATTCAACTTC+AGG | 0.266206 | 4.3:+69505284 | None:intergenic |
| TTTCGGTTGGATTATCAAAA+TGG | 0.280038 | 4.3:-69506056 | MS.gene88041:CDS |
| GATTTCAAAGTCTTTCAAAT+TGG | 0.322234 | 4.3:+69505420 | None:intergenic |
| TGAACTTTCCAACAGATGTT+TGG | 0.325943 | 4.3:-69505387 | MS.gene88041:CDS |
| AAGTACGAACTTTCTGCATT+AGG | 0.328303 | 4.3:+69504933 | None:intergenic |
| ACATGAAACGGCAAACATTA+AGG | 0.334447 | 4.3:-69505023 | MS.gene88041:CDS |
| ATGCCAGTGATCTCAATTCT+TGG | 0.334479 | 4.3:-69504636 | MS.gene88041:CDS |
| GAACTTTCCAACAGATGTTT+GGG | 0.347879 | 4.3:-69505386 | MS.gene88041:CDS |
| AATGTTTGCCGTTTCATGTT+TGG | 0.366928 | 4.3:+69505027 | None:intergenic |
| CAACAAGTTGGCAGGATGCC+TGG | 0.376214 | 4.3:-69504974 | MS.gene88041:CDS |
| CGGATTTCTTCAACTGGATC+AGG | 0.377073 | 4.3:+69504998 | None:intergenic |
| TTTATTAGAAGCTAAAACTT+TGG | 0.377508 | 4.3:+69505594 | None:intergenic |
| TCGAAGTGTAATACATAGAT+TGG | 0.392545 | 4.3:-69505662 | MS.gene88041:CDS |
| CAGATGTTTGGGATTTCCTT+GGG | 0.397990 | 4.3:-69505375 | MS.gene88041:CDS |
| AAAGAATCTCATTGATCATC+AGG | 0.399245 | 4.3:-69504780 | MS.gene88041:CDS |
| TGTTGACGGATTTCTTCAAC+TGG | 0.401246 | 4.3:+69504992 | None:intergenic |
| AACTACATGATCCTCTCTAT+TGG | 0.423268 | 4.3:+69505822 | None:intergenic |
| ACAGATGTTTGGGATTTCCT+TGG | 0.426261 | 4.3:-69505376 | MS.gene88041:CDS |
| TTATCTCGGGCTGTGCCTCT+TGG | 0.428365 | 4.3:-69505745 | MS.gene88041:CDS |
| AGATGGATCTGAAGAGCTTT+CGG | 0.433864 | 4.3:-69506073 | MS.gene88041:CDS |
| TTGAAAGACTTTGAAATCCA+TGG | 0.438972 | 4.3:-69505415 | MS.gene88041:CDS |
| CAAGACAATCTACTTGCATC+TGG | 0.441632 | 4.3:-69505169 | MS.gene88041:CDS |
| TTGAATCTTCAAAGCCACTA+TGG | 0.444477 | 4.3:-69505277 | MS.gene88041:CDS |
| CAATTATGCTTCGGCATCAA+AGG | 0.453952 | 4.3:-69505620 | MS.gene88041:CDS |
| CTCTTCTTCCAAACATGAAA+CGG | 0.457428 | 4.3:-69505035 | MS.gene88041:CDS |
| CGATGCTTGCTTTCCGTCAG+AGG | 0.460007 | 4.3:-69505968 | MS.gene88041:CDS |
| GTGCCTCTAATATATTAAGC+AGG | 0.461361 | 4.3:-69505561 | MS.gene88041:CDS |
| ATCAGTTCTAAAGTTAAGTC+AGG | 0.463772 | 4.3:-69505697 | MS.gene88041:CDS |
| AACAAGTTGGCAGGATGCCT+GGG | 0.465917 | 4.3:-69504973 | MS.gene88041:CDS |
| GGTGGAGATGCTGAGGCTAA+TGG | 0.472870 | 4.3:-69505928 | MS.gene88041:CDS |
| TTGAGCATGCCTCACATTCG+AGG | 0.476058 | 4.3:+69505342 | None:intergenic |
| AAAATCTGATATCTTATCTC+GGG | 0.484874 | 4.3:-69505758 | MS.gene88041:CDS |
| TGTTCAATCACAGCAGGATC+AGG | 0.490358 | 4.3:+69505109 | None:intergenic |
| GGATCTGAAGAGCTTTCGGT+TGG | 0.496922 | 4.3:-69506069 | MS.gene88041:CDS |
| GCTTCTAATAAAGAAGGAAA+AGG | 0.498751 | 4.3:-69505583 | MS.gene88041:CDS |
| TGTTCTTAAAGAGCCAAAAT+GGG | 0.500054 | 4.3:-69505314 | MS.gene88041:CDS |
| GCATCCTGCCAACTTGTTGA+CGG | 0.500920 | 4.3:+69504978 | None:intergenic |
| GTCTTGATGAATTCAAGAGC+AGG | 0.506199 | 4.3:-69505723 | MS.gene88041:CDS |
| AGGAAATCCCAAACATCTGT+TGG | 0.507573 | 4.3:+69505379 | None:intergenic |
| GAAGAAGAGATATCTGAAGC+AGG | 0.516512 | 4.3:+69505049 | None:intergenic |
| TGCAGAATACAATTATGCTT+CGG | 0.521102 | 4.3:-69505629 | MS.gene88041:CDS |
| TTGGAAAGTTCAGACTTCCA+TGG | 0.523368 | 4.3:+69505398 | None:intergenic |
| TTAGTGAGTCACACAATGGT+AGG | 0.534117 | 4.3:-69505900 | MS.gene88041:CDS |
| TCGAAATCCGTGTTCTGTGG+TGG | 0.535966 | 4.3:-69505521 | MS.gene88041:CDS |
| CAGAGATTTCACAAAATCCA+TGG | 0.536981 | 4.3:+69506022 | None:intergenic |
| TGAACATGTTCAATCACAGC+AGG | 0.538033 | 4.3:+69505103 | None:intergenic |
| CGAAATCCGTGTTCTGTGGT+GGG | 0.540374 | 4.3:-69505520 | MS.gene88041:CDS |
| GAGGCTTTAATATACTCTAA+AGG | 0.542963 | 4.3:-69505949 | MS.gene88041:CDS |
| TCACACAATGGTAGGGAAAG+TGG | 0.547155 | 4.3:-69505892 | MS.gene88041:CDS |
| AAATCCGTCAACAAGTTGGC+AGG | 0.547210 | 4.3:-69504982 | MS.gene88041:CDS |
| AATTATGCTTCGGCATCAAA+GGG | 0.548259 | 4.3:-69505619 | MS.gene88041:CDS |
| AGTCTTTCAAATTGGAAGAG+TGG | 0.555467 | 4.3:+69505428 | None:intergenic |
| TAATTGTATTCTGCACCGCC+AGG | 0.555812 | 4.3:+69505637 | None:intergenic |
| AATCTACTTGCATCTGGAGA+AGG | 0.555840 | 4.3:-69505163 | MS.gene88041:CDS |
| CTTCCAAGAATTGAGATCAC+TGG | 0.557290 | 4.3:+69504633 | None:intergenic |
| CAATCACAGCAGGATCAGGA+TGG | 0.558041 | 4.3:+69505113 | None:intergenic |
| GGAACTTTCAGAAGAAACCT+TGG | 0.560587 | 4.3:-69505482 | MS.gene88041:CDS |
| AGTGGTGCTTATGCGGTACC+TGG | 0.565403 | 4.3:-69505874 | MS.gene88041:CDS |
| TCTAAAGTTAAGTCAGGCAC+TGG | 0.565512 | 4.3:-69505691 | MS.gene88041:CDS |
| CGAATGTGAGGCATGCTCAA+AGG | 0.565768 | 4.3:-69505339 | MS.gene88041:CDS |
| CTCTAAAGGTGGAGATGCTG+AGG | 0.568214 | 4.3:-69505935 | MS.gene88041:CDS |
| GGTGGGAAAATTTGTCATCA+TGG | 0.568310 | 4.3:-69505503 | MS.gene88041:CDS |
| GAGTATATTAAAGCCTCTGA+CGG | 0.573061 | 4.3:+69505955 | None:intergenic |
| AATCACAGCAGGATCAGGAT+GGG | 0.580916 | 4.3:+69505114 | None:intergenic |
| TAGTGAGTCACACAATGGTA+GGG | 0.581433 | 4.3:-69505899 | MS.gene88041:CDS |
| AATAAAATTCAGAACCATAG+TGG | 0.582520 | 4.3:+69505263 | None:intergenic |
| AGAGATATCTGAAGCAGGGA+CGG | 0.584287 | 4.3:+69505054 | None:intergenic |
| ATCCTCCAGCATCCTCTCAA+CGG | 0.584718 | 4.3:+69505204 | None:intergenic |
| ATCTTGAGAACAGTATCCCC+AGG | 0.590052 | 4.3:+69504956 | None:intergenic |
| GAAGAAATCCGTCAACAAGT+TGG | 0.592762 | 4.3:-69504986 | MS.gene88041:CDS |
| TGCCTCTAATATATTAAGCA+GGG | 0.599484 | 4.3:-69505560 | MS.gene88041:CDS |
| GGATGCCGTTGAGAGGATGC+TGG | 0.600025 | 4.3:-69505209 | MS.gene88041:CDS |
| GTAATACATAGATTGGAGCC+TGG | 0.603227 | 4.3:-69505655 | MS.gene88041:CDS |
| TACTGATTCTGCCAATAGAG+AGG | 0.605773 | 4.3:-69505833 | MS.gene88041:CDS |
| ATCACAGCAGGATCAGGATG+GGG | 0.610550 | 4.3:+69505115 | None:intergenic |
| TTGGTGTGGATGCCGTTGAG+AGG | 0.612570 | 4.3:-69505216 | MS.gene88041:CDS |
| TATTTCTATAGTATCTACCA+AGG | 0.616012 | 4.3:+69505465 | None:intergenic |
| AAAGAGTATAGCAAAGACAC+AGG | 0.618523 | 4.3:-69504842 | MS.gene88041:CDS |
| TCTTCGAAATCCGTGTTCTG+TGG | 0.620035 | 4.3:-69505524 | MS.gene88041:CDS |
| TCTTGATGAATTCAAGAGCA+GGG | 0.621293 | 4.3:-69505722 | MS.gene88041:CDS |
| AAATGGAATGAAGTGAACCA+TGG | 0.624684 | 4.3:-69506039 | MS.gene88041:CDS |
| AAGAAGAGATATCTGAAGCA+GGG | 0.630258 | 4.3:+69505050 | None:intergenic |
| GCTTTAATATACTCTAAAGG+TGG | 0.636410 | 4.3:-69505946 | MS.gene88041:CDS |
| TAGGGAAAGTGGTGCTTATG+CGG | 0.637556 | 4.3:-69505881 | MS.gene88041:CDS |
| TCGAGGCAGTAAAATTCCCA+AGG | 0.650182 | 4.3:+69505359 | None:intergenic |
| TTGAATTCATCAAGACCAAG+AGG | 0.657165 | 4.3:+69505730 | None:intergenic |
| ACAAGTTGGCAGGATGCCTG+GGG | 0.671945 | 4.3:-69504972 | MS.gene88041:CDS |
| TTAGTTAGTGAGTCACACAA+TGG | 0.699748 | 4.3:-69505904 | MS.gene88041:CDS |
| TGCCGTTGAGAGGATGCTGG+AGG | 0.725275 | 4.3:-69505206 | MS.gene88041:CDS |
| ATACATAGATTGGAGCCTGG+CGG | 0.731549 | 4.3:-69505652 | MS.gene88041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATAGAAAGTAGTA+TGG | + | chr4.3:69506024-69506043 | None:intergenic | 15.0% |
| !!! | ATACTACTTTCTATTAATTT+TGG | - | chr4.3:69506023-69506042 | MS.gene88041:CDS | 15.0% |
| !!! | TTAATTTTGGAAATGATTTT+TGG | - | chr4.3:69506036-69506055 | MS.gene88041:CDS | 15.0% |
| !! | AAAAATCTGATATCTTATCT+CGG | - | chr4.3:69504952-69504971 | MS.gene88041:CDS | 20.0% |
| !! | TTTATTAGAAGCTAAAACTT+TGG | + | chr4.3:69505120-69505139 | None:intergenic | 20.0% |
| !!! | AGACGTAAATTTATTTGTTT+TGG | - | chr4.3:69505802-69505821 | MS.gene88041:CDS | 20.0% |
| !!! | TAAATTTATTTGTTTTGGAG+CGG | - | chr4.3:69505807-69505826 | MS.gene88041:CDS | 20.0% |
| !!! | TTTTCTTTATTTATATCACC+AGG | + | chr4.3:69504858-69504877 | None:intergenic | 20.0% |
| ! | AAAATCTGATATCTTATCTC+GGG | - | chr4.3:69504953-69504972 | MS.gene88041:CDS | 25.0% |
| ! | AATAAAATTCAGAACCATAG+TGG | + | chr4.3:69505451-69505470 | None:intergenic | 25.0% |
| ! | GATTTCAAAGTCTTTCAAAT+TGG | + | chr4.3:69505294-69505313 | None:intergenic | 25.0% |
| ! | GTTCATAAAAAAACTCTTGA+GGG | - | chr4.3:69505626-69505645 | MS.gene88041:CDS | 25.0% |
| ! | TGTTCATAAAAAAACTCTTG+AGG | - | chr4.3:69505625-69505644 | MS.gene88041:CDS | 25.0% |
| ! | TTCATAAAAAAACTCTTGAG+GGG | - | chr4.3:69505627-69505646 | MS.gene88041:CDS | 25.0% |
| !! | TATTTCTATAGTATCTACCA+AGG | + | chr4.3:69505249-69505268 | None:intergenic | 25.0% |
| !!! | AGTCTTATTTTGTATGTAGA+TGG | - | chr4.3:69504621-69504640 | MS.gene88041:CDS | 25.0% |
| !!! | GTTTTAGCTTCTAATAAAGA+AGG | - | chr4.3:69505122-69505141 | MS.gene88041:CDS | 25.0% |
| AAAGAATCTCATTGATCATC+AGG | - | chr4.3:69505931-69505950 | MS.gene88041:CDS | 30.0% | |
| ATCCCTGCTTAATATATTAG+AGG | + | chr4.3:69505156-69505175 | None:intergenic | 30.0% | |
| GCTTCTAATAAAGAAGGAAA+AGG | - | chr4.3:69505128-69505147 | MS.gene88041:CDS | 30.0% | |
| TCGAAGTGTAATACATAGAT+TGG | - | chr4.3:69505049-69505068 | MS.gene88041:CDS | 30.0% | |
| TGCAGAATACAATTATGCTT+CGG | - | chr4.3:69505082-69505101 | MS.gene88041:CDS | 30.0% | |
| TGCCTCTAATATATTAAGCA+GGG | - | chr4.3:69505151-69505170 | MS.gene88041:CDS | 30.0% | |
| TGTTCTTAAAGAGCCAAAAT+GGG | - | chr4.3:69505397-69505416 | MS.gene88041:CDS | 30.0% | |
| TTGTTCTTAAAGAGCCAAAA+TGG | - | chr4.3:69505396-69505415 | MS.gene88041:CDS | 30.0% | |
| TTTCGGTTGGATTATCAAAA+TGG | - | chr4.3:69504655-69504674 | MS.gene88041:intron | 30.0% | |
| ! | GAGGCTTTAATATACTCTAA+AGG | - | chr4.3:69504762-69504781 | MS.gene88041:intron | 30.0% |
| ! | GCTTTAATATACTCTAAAGG+TGG | - | chr4.3:69504765-69504784 | MS.gene88041:intron | 30.0% |
| !! | ATCAGTTCTAAAGTTAAGTC+AGG | - | chr4.3:69505014-69505033 | MS.gene88041:CDS | 30.0% |
| !! | TTGAAAGACTTTGAAATCCA+TGG | - | chr4.3:69505296-69505315 | MS.gene88041:CDS | 30.0% |
| !!! | TTCAAGATAATGCTGTTTTG+AGG | - | chr4.3:69506132-69506151 | MS.gene88041:CDS | 30.0% |
| AAATGGAATGAAGTGAACCA+TGG | - | chr4.3:69504672-69504691 | MS.gene88041:intron | 35.0% | |
| AACTACATGATCCTCTCTAT+TGG | + | chr4.3:69504892-69504911 | None:intergenic | 35.0% | |
| AAGTACGAACTTTCTGCATT+AGG | + | chr4.3:69505781-69505800 | None:intergenic | 35.0% | |
| AATTATGCTTCGGCATCAAA+GGG | - | chr4.3:69505092-69505111 | MS.gene88041:CDS | 35.0% | |
| ACATGAAACGGCAAACATTA+AGG | - | chr4.3:69505688-69505707 | MS.gene88041:CDS | 35.0% | |
| AGTCTTTCAAATTGGAAGAG+TGG | + | chr4.3:69505286-69505305 | None:intergenic | 35.0% | |
| CAGAGATTTCACAAAATCCA+TGG | + | chr4.3:69504692-69504711 | None:intergenic | 35.0% | |
| CTCTTCTTCCAAACATGAAA+CGG | - | chr4.3:69505676-69505695 | MS.gene88041:CDS | 35.0% | |
| GAACTTTCCAACAGATGTTT+GGG | - | chr4.3:69505325-69505344 | MS.gene88041:CDS | 35.0% | |
| GAGTATATTAAAGCCTCTGA+CGG | + | chr4.3:69504759-69504778 | None:intergenic | 35.0% | |
| GTGCCTCTAATATATTAAGC+AGG | - | chr4.3:69505150-69505169 | MS.gene88041:CDS | 35.0% | |
| TCTTGATGAATTCAAGAGCA+GGG | - | chr4.3:69504989-69505008 | MS.gene88041:CDS | 35.0% | |
| TGAACTTTCCAACAGATGTT+TGG | - | chr4.3:69505324-69505343 | MS.gene88041:CDS | 35.0% | |
| TTAGTTAGTGAGTCACACAA+TGG | - | chr4.3:69504807-69504826 | MS.gene88041:CDS | 35.0% | |
| TTGAATCTTCAAAGCCACTA+TGG | - | chr4.3:69505434-69505453 | MS.gene88041:CDS | 35.0% | |
| TTGAATTCATCAAGACCAAG+AGG | + | chr4.3:69504984-69505003 | None:intergenic | 35.0% | |
| ! | AAAGAGTATAGCAAAGACAC+AGG | - | chr4.3:69505869-69505888 | MS.gene88041:CDS | 35.0% |
| ! | AAGAAGAGATATCTGAAGCA+GGG | + | chr4.3:69505664-69505683 | None:intergenic | 35.0% |
| ! | AATGTTTGCCGTTTCATGTT+TGG | + | chr4.3:69505687-69505706 | None:intergenic | 35.0% |
| !! | CTAAGCGTTGTTGAAGTTTT+TGG | - | chr4.3:69505476-69505495 | MS.gene88041:CDS | 35.0% |
| !!! | AAATGATTTTTGGCTCATGC+AGG | - | chr4.3:69506046-69506065 | MS.gene88041:CDS | 35.0% |
| !!! | ATTTGTTTTGGAGCGGTATA+TGG | - | chr4.3:69505814-69505833 | MS.gene88041:CDS | 35.0% |
| AATCTACTTGCATCTGGAGA+AGG | - | chr4.3:69505548-69505567 | MS.gene88041:CDS | 40.0% | |
| AGATGGATCTGAAGAGCTTT+CGG | - | chr4.3:69504638-69504657 | MS.gene88041:CDS | 40.0% | |
| AGGAAATCCCAAACATCTGT+TGG | + | chr4.3:69505335-69505354 | None:intergenic | 40.0% | |
| ATGCCAGTGATCTCAATTCT+TGG | - | chr4.3:69506075-69506094 | MS.gene88041:CDS | 40.0% | |
| CAAGACAATCTACTTGCATC+TGG | - | chr4.3:69505542-69505561 | MS.gene88041:CDS | 40.0% | |
| CAATTATGCTTCGGCATCAA+AGG | - | chr4.3:69505091-69505110 | MS.gene88041:CDS | 40.0% | |
| CTTCCAAGAATTGAGATCAC+TGG | + | chr4.3:69506081-69506100 | None:intergenic | 40.0% | |
| GAAGAAATCCGTCAACAAGT+TGG | - | chr4.3:69505725-69505744 | MS.gene88041:CDS | 40.0% | |
| GGAACTTTCAGAAGAAACCT+TGG | - | chr4.3:69505229-69505248 | MS.gene88041:CDS | 40.0% | |
| GGTGGGAAAATTTGTCATCA+TGG | - | chr4.3:69505208-69505227 | MS.gene88041:CDS | 40.0% | |
| GTAATACATAGATTGGAGCC+TGG | - | chr4.3:69505056-69505075 | MS.gene88041:CDS | 40.0% | |
| GTCTTGATGAATTCAAGAGC+AGG | - | chr4.3:69504988-69505007 | MS.gene88041:CDS | 40.0% | |
| TAGTGAGTCACACAATGGTA+GGG | - | chr4.3:69504812-69504831 | MS.gene88041:CDS | 40.0% | |
| TGAACATGTTCAATCACAGC+AGG | + | chr4.3:69505611-69505630 | None:intergenic | 40.0% | |
| TTAGTGAGTCACACAATGGT+AGG | - | chr4.3:69504811-69504830 | MS.gene88041:CDS | 40.0% | |
| TTGGAAAGTTCAGACTTCCA+TGG | + | chr4.3:69505316-69505335 | None:intergenic | 40.0% | |
| ! | AATTTTCCCACCACAGAACA+CGG | + | chr4.3:69505200-69505219 | None:intergenic | 40.0% |
| ! | ACAGATGTTTGGGATTTCCT+TGG | - | chr4.3:69505335-69505354 | MS.gene88041:CDS | 40.0% |
| ! | ATTTTACTGCCTCGAATGTG+AGG | - | chr4.3:69505360-69505379 | MS.gene88041:CDS | 40.0% |
| ! | CAGATGTTTGGGATTTCCTT+GGG | - | chr4.3:69505336-69505355 | MS.gene88041:CDS | 40.0% |
| ! | GAAGAAGAGATATCTGAAGC+AGG | + | chr4.3:69505665-69505684 | None:intergenic | 40.0% |
| ! | TCTAAAGTTAAGTCAGGCAC+TGG | - | chr4.3:69505020-69505039 | MS.gene88041:CDS | 40.0% |
| ! | TTCAGGTATCTCACCCATTT+TGG | + | chr4.3:69505413-69505432 | None:intergenic | 40.0% |
| !! | GGCTTTGAAGATTCAACTTC+AGG | + | chr4.3:69505430-69505449 | None:intergenic | 40.0% |
| !! | TACTGATTCTGCCAATAGAG+AGG | - | chr4.3:69504878-69504897 | MS.gene88041:CDS | 40.0% |
| !! | TGTTGACGGATTTCTTCAAC+TGG | + | chr4.3:69505722-69505741 | None:intergenic | 40.0% |
| !!! | CGTTGTTGAAGTTTTTGGTG+TGG | - | chr4.3:69505481-69505500 | MS.gene88041:CDS | 40.0% |
| AATCACAGCAGGATCAGGAT+GGG | + | chr4.3:69505600-69505619 | None:intergenic | 45.0% | |
| ATACATAGATTGGAGCCTGG+CGG | - | chr4.3:69505059-69505078 | MS.gene88041:CDS | 45.0% | |
| ATCTTGAGAACAGTATCCCC+AGG | + | chr4.3:69505758-69505777 | None:intergenic | 45.0% | |
| CGGATTTCTTCAACTGGATC+AGG | + | chr4.3:69505716-69505735 | None:intergenic | 45.0% | |
| TAATTGTATTCTGCACCGCC+AGG | + | chr4.3:69505077-69505096 | None:intergenic | 45.0% | |
| TAGGGAAAGTGGTGCTTATG+CGG | - | chr4.3:69504830-69504849 | MS.gene88041:CDS | 45.0% | |
| TCACACAATGGTAGGGAAAG+TGG | - | chr4.3:69504819-69504838 | MS.gene88041:CDS | 45.0% | |
| TCGAGGCAGTAAAATTCCCA+AGG | + | chr4.3:69505355-69505374 | None:intergenic | 45.0% | |
| TCTTCGAAATCCGTGTTCTG+TGG | - | chr4.3:69505187-69505206 | MS.gene88041:CDS | 45.0% | |
| TGTTCAATCACAGCAGGATC+AGG | + | chr4.3:69505605-69505624 | None:intergenic | 45.0% | |
| ! | AAATCCGTCAACAAGTTGGC+AGG | - | chr4.3:69505729-69505748 | MS.gene88041:CDS | 45.0% |
| ! | AGAGATATCTGAAGCAGGGA+CGG | + | chr4.3:69505660-69505679 | None:intergenic | 45.0% |
| ATCACAGCAGGATCAGGATG+GGG | + | chr4.3:69505599-69505618 | None:intergenic | 50.0% | |
| ATCCTCCAGCATCCTCTCAA+CGG | + | chr4.3:69505510-69505529 | None:intergenic | 50.0% | |
| CAATCACAGCAGGATCAGGA+TGG | + | chr4.3:69505601-69505620 | None:intergenic | 50.0% | |
| CGAAATCCGTGTTCTGTGGT+GGG | - | chr4.3:69505191-69505210 | MS.gene88041:CDS | 50.0% | |
| CGAATGTGAGGCATGCTCAA+AGG | - | chr4.3:69505372-69505391 | MS.gene88041:CDS | 50.0% | |
| GGATCTGAAGAGCTTTCGGT+TGG | - | chr4.3:69504642-69504661 | MS.gene88041:CDS | 50.0% | |
| TCGAAATCCGTGTTCTGTGG+TGG | - | chr4.3:69505190-69505209 | MS.gene88041:CDS | 50.0% | |
| TTGAGCATGCCTCACATTCG+AGG | + | chr4.3:69505372-69505391 | None:intergenic | 50.0% | |
| ! | AACAAGTTGGCAGGATGCCT+GGG | - | chr4.3:69505738-69505757 | MS.gene88041:CDS | 50.0% |
| ! | CTCTAAAGGTGGAGATGCTG+AGG | - | chr4.3:69504776-69504795 | MS.gene88041:CDS | 50.0% |
| !! | GCATCCTGCCAACTTGTTGA+CGG | + | chr4.3:69505736-69505755 | None:intergenic | 50.0% |
| AGTGGTGCTTATGCGGTACC+TGG | - | chr4.3:69504837-69504856 | MS.gene88041:CDS | 55.0% | |
| CGATGCTTGCTTTCCGTCAG+AGG | - | chr4.3:69504743-69504762 | MS.gene88041:intron | 55.0% | |
| GGTGGAGATGCTGAGGCTAA+TGG | - | chr4.3:69504783-69504802 | MS.gene88041:CDS | 55.0% | |
| TTATCTCGGGCTGTGCCTCT+TGG | - | chr4.3:69504966-69504985 | MS.gene88041:CDS | 55.0% | |
| TTGGTGTGGATGCCGTTGAG+AGG | - | chr4.3:69505495-69505514 | MS.gene88041:CDS | 55.0% | |
| ! | ACAAGTTGGCAGGATGCCTG+GGG | - | chr4.3:69505739-69505758 | MS.gene88041:CDS | 55.0% |
| ! | CAACAAGTTGGCAGGATGCC+TGG | - | chr4.3:69505737-69505756 | MS.gene88041:CDS | 55.0% |
| GGATGCCGTTGAGAGGATGC+TGG | - | chr4.3:69505502-69505521 | MS.gene88041:CDS | 60.0% | |
| TGCCGTTGAGAGGATGCTGG+AGG | - | chr4.3:69505505-69505524 | MS.gene88041:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 69504576 | 69506157 | 69504576 | ID=MS.gene88041 |
| chr4.3 | mRNA | 69504576 | 69506157 | 69504576 | ID=MS.gene88041.t1;Parent=MS.gene88041 |
| chr4.3 | exon | 69504772 | 69506157 | 69504772 | ID=MS.gene88041.t1.exon1;Parent=MS.gene88041.t1 |
| chr4.3 | CDS | 69504772 | 69506157 | 69504772 | ID=cds.MS.gene88041.t1;Parent=MS.gene88041.t1 |
| chr4.3 | exon | 69504576 | 69504665 | 69504576 | ID=MS.gene88041.t1.exon2;Parent=MS.gene88041.t1 |
| chr4.3 | CDS | 69504576 | 69504665 | 69504576 | ID=cds.MS.gene88041.t1;Parent=MS.gene88041.t1 |
| Gene Sequence |
| Protein sequence |
