AlfalfaGEDB | MS.gene88645

M. sativa cultivar XinJiangDaYe / MS.gene88645

KEGG: K06085
GO: -
PFAM: PF11559.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88645.t1	XP_013458523.1	99.2	375	3	0	1	375	1	375	3.50E-196	694.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88645.t1	Q9Y2D8	26.8	321	220	5	8	318	43	358	1.4e-23	112.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88645.t1	A0A072URX3	99.2	375	3	0	1	375	1	375	2.5e-196	694.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049178	MS.gene88645	0.808311	3.30E-50	-1.69E-46
MS.gene049887	MS.gene88645	0.819387	1.19E-52	-1.69E-46
MS.gene050807	MS.gene88645	0.802863	4.58E-49	-1.69E-46
MS.gene050838	MS.gene88645	0.824114	9.62E-54	-1.69E-46
MS.gene051063	MS.gene88645	0.823761	1.16E-53	-1.69E-46
MS.gene051687	MS.gene88645	0.80486	1.76E-49	-1.69E-46
MS.gene051700	MS.gene88645	0.802251	6.13E-49	-1.69E-46
MS.gene051746	MS.gene88645	0.81064	1.04E-50	-1.69E-46
MS.gene051748	MS.gene88645	0.818616	1.79E-52	-1.69E-46
MS.gene051903	MS.gene88645	0.809472	1.86E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene88645.t1	MTR_4g127970	99.200	375	3	1	375	1	375	771
MS.gene88645.t1	MTR_4g127970	99.194	372	3	1	372	1	372	763
MS.gene88645.t1	MTR_4g127970	99.176	364	3	1	364	1	364	748

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88645.t1	AT5G57410	79.255	376	72	3	1	373	1	373	0.0	597
MS.gene88645.t1	AT5G57410	78.836	378	74	3	1	375	1	375	0.0	597
MS.gene88645.t1	AT2G18876	76.676	373	86	1	4	375	6	378	0.0	576
MS.gene88645.t1	AT5G57410	82.388	335	54	2	42	373	1	333	0.0	551
MS.gene88645.t1	AT2G18876	77.857	280	62	0	96	375	1	280	9.43e-156	439

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Find 71 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATACATTAAGTTGC+AGG	0.407699	8.4:+6542225	MS.gene88645:CDS
AACATCTTGCAAAGTCTGAC+AGG	0.478571	8.4:+6544501	MS.gene88645:CDS
AACCAAATGTAACGAGTGAT+TGG	0.476259	8.4:-6541332	None:intergenic
AACCAATCACTCGTTACATT+TGG	0.384759	8.4:+6541330	MS.gene88645:CDS
AAGAAGAAAGAATCTAGGTC+GGG	0.563858	8.4:+6542424	MS.gene88645:CDS
AAGAGAGGGATGAATTTCAG+AGG	0.623845	8.4:+6542031	MS.gene88645:CDS
AAGATCTAAGTCTCCTTCAG+GGG	0.653936	8.4:-6541058	None:intergenic
AAGCTCAACTTGTTGAAGCA+AGG	0.554611	8.4:+6544014	MS.gene88645:CDS
AAGGAGCATTATACAAGAGC+AGG	0.468589	8.4:+6544033	MS.gene88645:CDS
AAGGGAGGCAACGTGGAACA+TGG	0.578914	8.4:+6542568	MS.gene88645:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACAATATCACAACAC+AGG	-	chr8.4:6545641-6545660	None:intergenic	30.0%
AAATGAGAACGGAATTAAAG+TGG	-	chr8.4:6543038-6543057	None:intergenic	30.0%
AAGAGAGAATTGAAGATGAT+AGG	-	chr8.4:6541206-6541225	None:intergenic	30.0%
AATACATGAGATGAAGAAGA+AGG	+	chr8.4:6542201-6542220	MS.gene88645:CDS	30.0%
AGAAAACACTAAGAATACCT+TGG	-	chr8.4:6544527-6544546	None:intergenic	30.0%
AGAGAGAATTGAAGATGATA+GGG	-	chr8.4:6541205-6541224	None:intergenic	30.0%
AGGAAAATCAATGAAACATG+GGG	-	chr8.4:6542875-6542894	None:intergenic	30.0%
ATTATTAATTGCGTCCCAAT+TGG	+	chr8.4:6545605-6545624	MS.gene88645:intron	30.0%
ATTGGAAGCCTGTAATAATA+TGG	+	chr8.4:6545543-6545562	MS.gene88645:intron	30.0%
CAAAAATTTCTCTGATGCTT+GGG	-	chr8.4:6543190-6543209	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	6541051	6545687	6541051	ID=MS.gene88645
chr8.4	mRNA	6541051	6545687	6541051	ID=MS.gene88645.t1;Parent=MS.gene88645
chr8.4	exon	6541051	6541083	6541051	ID=MS.gene88645.t1.exon1;Parent=MS.gene88645.t1
chr8.4	CDS	6541051	6541083	6541051	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6541161	6541189	6541161	ID=MS.gene88645.t1.exon2;Parent=MS.gene88645.t1
chr8.4	CDS	6541161	6541189	6541161	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6541278	6541389	6541278	ID=MS.gene88645.t1.exon3;Parent=MS.gene88645.t1
chr8.4	CDS	6541278	6541389	6541278	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6541485	6541582	6541485	ID=MS.gene88645.t1.exon4;Parent=MS.gene88645.t1
chr8.4	CDS	6541485	6541582	6541485	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6541673	6541769	6541673	ID=MS.gene88645.t1.exon5;Parent=MS.gene88645.t1
chr8.4	CDS	6541673	6541769	6541673	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6541982	6542071	6541982	ID=MS.gene88645.t1.exon6;Parent=MS.gene88645.t1
chr8.4	CDS	6541982	6542071	6541982	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6542184	6542246	6542184	ID=MS.gene88645.t1.exon7;Parent=MS.gene88645.t1
chr8.4	CDS	6542184	6542246	6542184	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6542397	6542471	6542397	ID=MS.gene88645.t1.exon8;Parent=MS.gene88645.t1
chr8.4	CDS	6542397	6542471	6542397	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6542564	6542629	6542564	ID=MS.gene88645.t1.exon9;Parent=MS.gene88645.t1
chr8.4	CDS	6542564	6542629	6542564	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6542717	6542794	6542717	ID=MS.gene88645.t1.exon10;Parent=MS.gene88645.t1
chr8.4	CDS	6542717	6542794	6542717	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6543565	6543675	6543565	ID=MS.gene88645.t1.exon11;Parent=MS.gene88645.t1
chr8.4	CDS	6543565	6543675	6543565	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6543755	6543832	6543755	ID=MS.gene88645.t1.exon12;Parent=MS.gene88645.t1
chr8.4	CDS	6543755	6543832	6543755	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6543935	6544054	6543935	ID=MS.gene88645.t1.exon13;Parent=MS.gene88645.t1
chr8.4	CDS	6543935	6544054	6543935	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6544485	6544528	6544485	ID=MS.gene88645.t1.exon14;Parent=MS.gene88645.t1
chr8.4	CDS	6544485	6544528	6544485	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6544611	6544629	6544611	ID=MS.gene88645.t1.exon15;Parent=MS.gene88645.t1
chr8.4	CDS	6544611	6544629	6544611	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1
chr8.4	exon	6545673	6545687	6545673	ID=MS.gene88645.t1.exon16;Parent=MS.gene88645.t1
chr8.4	CDS	6545673	6545687	6545673	ID=cds.MS.gene88645.t1;Parent=MS.gene88645.t1

Gene Sequence

>MS.gene88645

ATGCCTTCCCCTGAAGGAGACTTAGATCTTAGGGTAAAACTCAATTAAATTACTATTCCCTTTTTTTCTTCTTTAATTTCTTTCCCTAACTGTCTCATTTTTTCTTTCAGCCATCTTCTCATTCTGCTTTCACAACCGGGTCAGTTCAAAACCCTATCATCTTCAATTCTCTCTTTCGTAGGGTTTTCGTTTTCGCAACGACTAACGACATTGTCGTTTTGTTTCAGAGAATACACATTCGCCGATGTAAACAATTTGGAACATTGCGCTAAGTATTTGAACCAATCACTCGTTACATTTGGTTTCCCTGCTTCACTTGATCTATTCTCAAACGATCCCGTAAGAATTTTGATCTTTGATTTTTTTGTTTCGATAATTACATTTTTTTTTTGTTCTTGTTTTTAAAAATGGTGTTGTTTTTGAAAATGTGGTAGGTTTCTATAGCAAGGACGTGCAATTGCATATACTTCTTGCTTCAGCAAAGACAGCGTGATGTCGAATTTAGAGAGTCTGCGAATGAACAAAGACAACGGTAATTGGTTCAATTTTGATATCATTAGGTTAATGTTCTGTGTTTGTTTGTGTGTTTGGTCTTGAAAGTGTTTTGATTTTGATGTTATAGATTGTTGTCGGATATATCAAGATATGAGGCTAAAGTTGAGAGGCTTGATGGACAACTACAAGCTAAAGATAGAGAGATAGCGACGATAACTAGAACGGTGAGGCAATGATTTTAAATTATGGTTTTGGTAAAATTTCAAGCATTGAATTGAAAGTGTATCTATAATGCGAGCATTGAATGATTTCCTTATTTACAAAATAATGTTAGTAGATTTGTTTGTTTTTGCTCTTTAGCGGTGGGATTTTTGTTTTGGGTACAATCTAGTGGTGGAATTTATTTTCTTTGTTAAGTGTTAACTCTCTTGTTTAGGAAGCTAAAAATACTGCAGCTCTCAAGGCCCAAATTGAGAAGCTGCAAAAAGAGAGGGATGAATTTCAGAGGATGGTTATTGGTAATCAGGTTAGAAGCTGTATTTACTTTGATTATTTTTCGTGTCTTGTTCTACAACTCCTACTTTAAAATGGATTAGCTCTGACTCTTTATCAATCTTACTATTTGATCGGTGCTAAAGCAAGTTAGGACTCAACAAATACATGAGATGAAGAAGAAGGAAAAGGAATACATTAAGTTGCAGGTAGGATATCTTTGACTTTTGTTGTTTAATGTGAATGGTATTTTGGTGATTCGTGCTGCTATATGGTAGGGTTTTTACCATTGAATTATTTCACGAACCCGCAAGTTATTAGACTTAGAAATATGAAAGGCTGGTACATTTTACTTGCAGGAGAGACTAAACCAAGTGTTGATGGAGAAGAAGAAAGAATCTAGGTCGGGCATGGAGATAATGAATTTGCTTCAGGTTTCAACCATCCACGTAGTTTTGAATGTTGCTTGTAACTTTTAAGATTGTGAATTTTGTGATAATTTGGTATTTGTGATGTGCATAAACAGAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAACTGACAATGATTTTTATAAAAAGATTGTATGCAAGCTTTCACCCTATCATTATAAACTTTATATTCTGGACACATTTTCATCTTTCACAATTTATTTATTATAATAATGAAAGGTGGACGCTTATGAGGTGAAAAATCAAGAACTGATAGCAGAAAATGCTGATTTAAGGGCATTGTTGAGATCAATGCAGGTGGGTTCTTGATTAGTAAGTTATTTGCTGAAATTTCTACTTGCAGACGTATAAGAATGCAACCTATGTGTTTTTTTCCCCATGTTTCATTGATTTTCCTTGATGTGATTTTGGATTTTCTAGCAACTTTTGTTTTGTTAACATCTTGTCAATGTATTTTTCTTTCTTAACGTGTTCATTCTTTAAGAGGTCTCTGGGTATTTGTGTTTGCGCGCGCGCGCACACACACAAATGAATTCGCCACTTTAATTCCGTTCTCATTTCATTCATAAATTTTTTATGCTTTGGGGCTGATTTTAGATATGTTAGCATTAGAGAGAAACTTGGAGGAAAAACCTCATGAATGGTGGTTGTATGGGTTTTGGTGGTTGCATATCTCATTGGAGGAAAAACCCAAGCATCAGAGAAATTTTTGGTGTTGGTGGTTGTTGCTGACTGGTTTTTAGACATAAAGACAACAATATAAATTCTTTAATGCATTTGGGGAACTAATTATTTTGGTGATGCAAAGTCCAATTGGACGGAGATTGGATGGCAATAATAACTAAATGGAACCGGGAAAAAAAGGAAAACATGAACTCTAATAAATCTGGTCTGGTGGCTTTCAGCATGTTTCTTCCTTTGTTTTTCATCCATCGTTGTAATTTTTATTTTGCGTAGGATCTGTACTTCCTTCCTTGTAAAGGCCGTTGTTCTATAATAATACCCACCCCCCTCTAAAGCAGGGTACTCAACCTAGATTATGAGATTTGTAAGTGTATTGATTACAGGTGGATATGCGTGATTTCTTAAATGCTCCTAACGGACTACCAAACCAATCTCCCACTACTAATGAAAAATCTGAAAGTAATCCTTCACATTCTCCGATGGTTGGAAGAACGGTATGGAAATTTACTAGTTTATTGTCCTTTGTTCGCATTGTCAAACTCTCCATGAAATTTATGAGTTTGTTACTTGCAGGACGTATTTGATCTTCCTTTTCACATGGCTAGAGATCAAATTGAAGAGAGTCTAAGAGCAAAGATGGCTTCTATAAAGGTTATTATTATTAGCATCACTTTTCTGTTTCCATCATTAAGTACTTGCATATATGAATTGTTTGTGTTTGGTTGTTAACGGCTTGAAAGTTGAAATATGAAGGAGCGCATGGTCCAATTGCAAGATGCTCAGAAAGAGGCAGAAGTCACTTCGGAAGCTACTGAGAGAGAACTTGAGCTTGAAGCTCAACTTGTTGAAGCAAGGAGCATTATACAAGAGCAGGTAATGTTTTATGCTCTCGCAATTGCAACAAGTTAGGTCCAAGGCATTTAGAATCCTGTTTTACTATGATGCAAAATAACAAAAGCTGATACTTTTTATTTTGAAATGCTATTCATCTGATGTTTTATGGTGTTTGGCCAATGCAAATTAGTTCTTTATGATGACAGCATAAACTAAATTGCTATTGAATTGGTGTTTCTTTTAGGATCGATATATGCTTACAACTTATAAGTCCATGTCTTTTGGTGGGTGCAGCCCTAAACATGTATCTTATTTTCAATCAGCTCTCTCCTTTAACAAATCCACGGCTTTTTTCTTCTTTCTTTTGCAATTGAATTGCCTGACAGTACTTTGCTCAGTGCTGGATCATGCTAATTTGGCTATGCATTTCAAATTTACGAGAATAATGTGATAATATGTTATATTGCAGGCATCTATAATGTCTAAACATCTTGCAAAGTCTGACAGGCCAAGGTATTCTTAGTGTTTTCTATTTGTTATAAATTGCCTAATATGTACTGCTGCAGTAAATTGATTTACTTTTTGAATTTTACAGGGAATCGGCACCGGCTGAGGTATGTATTTTATGTATATGTTTGTCTGTTTCATGTTTTGGGTTGGGATTCTGTTGTGTCACTTTATAATCAACCTAATTTTATAGTGTGAATTTGTTGGTGGTTGGTGGAAAAGTATCTTTGGAGATTTACTTTCAGTGAGATGTATTTTATTTTGTAATGATTAGGGCCTCAAACAAAATTGTTGCATGGCTAATCCTATCTGAGTTTGGGTTTCTTAAATTTCTTATTGAGATAGTTTATGATGTTTTCACATCAGATAAAACATCTAATATATTATGTATTTTTTTCTGTCGATTACGCGCATGCAAATGGGAGGTTAGGATTTGTTTTGGGGGTCTTACTCCTGGATAAATTTTCCTATTAGTTATGTTTATCGAGGTTATAGGAGTAAAAAGTTTTGCTTGTAAGAGTGCAACTTTCAAAAGAAGGTTTTTTGTTAATAAGTTGATACAACTTAATTAGCATGATAGGACAAGATGTGTACCTAACTTTTTAACGTTTTGTGATTTTGTAAATATGTTCAAAATGTATTGATCTGATTAAAATCCACTGGCTTTCCTATTGTGGGAACAACTCATTTTGTATCTTCTTAGACATCCAGTTTTAAAGATACAACTGGTTTGTACTAGGAATTAGAGCTTTAAAGAACATTAGAAATGGGTTTATGTCAAACTTATTCCTCTGCTAGCAGCAGAAGGGGTTCAACTATTAATGCTGACATGGTCCGTGTCTCTGTGGTGTTGATAGGGGTGGTGCTGGACACCCTTTTGATAATTGTCCGTGGCGGTTGTCAAAAAAACTGCCACACCATTTCCGCCATGACCGGCATTTAACTACACAACACTAAATGAGATTCAATCATAAAGTTAAAATCTTTATCATGTATCATCGCATGATCATATTGGTAGTAATTGGAAGCCTGTAATAATATGGTAAAATTGTTGTTACCACTTTACATTTAGAAGTAGATTCATTATTAATTGCGTCCCAATTGGTCACCTTATGCCTGTGTTGTGATATTGTTCTTTTCTGATTTACAGGGAGTATGCAACTAA

Protein sequence

>MS.gene88645.t1

MPSPEGDLDLRPSSHSAFTTGEYTFADVNNLEHCAKYLNQSLVTFGFPASLDLFSNDPVSIARTCNCIYFLLQQRQRDVEFRESANEQRQRLLSDISRYEAKVERLDGQLQAKDREIATITRTEAKNTAALKAQIEKLQKERDEFQRMVIGNQQVRTQQIHEMKKKEKEYIKLQERLNQVLMEKKKESRSGMEIMNLLQKEGRQRGTWNGKKTDNDFYKKIVDAYEVKNQELIAENADLRALLRSMQVDMRDFLNAPNGLPNQSPTTNEKSESNPSHSPMVGRTDVFDLPFHMARDQIEESLRAKMASIKERMVQLQDAQKEAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESAPAEGVCN