Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91401.t1 | XP_013469882.1 | 99.4 | 349 | 2 | 0 | 1 | 349 | 1 | 349 | 3.00E-189 | 671 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91401.t1 | O23787 | 80.1 | 356 | 64 | 3 | 1 | 349 | 1 | 356 | 7.0e-155 | 548.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91401.t1 | A0A072W0W5 | 99.4 | 349 | 2 | 0 | 1 | 349 | 1 | 349 | 2.1e-189 | 671.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene91401 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene049257 | MS.gene91401 | 0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene050315 | MS.gene91401 | 0.822011 | 2.98E-53 | -1.69E-46 |
| MS.gene050811 | MS.gene91401 | -0.82541 | 4.76E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene91401 | 0.80879 | 2.60E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene91401 | 0.816826 | 4.53E-52 | -1.69E-46 |
| MS.gene054343 | MS.gene91401 | 0.84001 | 1.12E-57 | -1.69E-46 |
| MS.gene054344 | MS.gene91401 | 0.812205 | 4.77E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene91401 | 0.829434 | 5.16E-55 | -1.69E-46 |
| MS.gene056633 | MS.gene91401 | 0.814205 | 1.73E-51 | -1.69E-46 |
| MS.gene057196 | MS.gene91401 | 0.84321 | 1.61E-58 | -1.69E-46 |
| MS.gene057332 | MS.gene91401 | 0.802975 | 4.35E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene91401 | 0.801111 | 1.05E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene91401 | 0.811394 | 7.16E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene91401 | 0.808064 | 3.72E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene91401 | 0.827042 | 1.95E-54 | -1.69E-46 |
| MS.gene059103 | MS.gene91401 | -0.800139 | 1.66E-48 | -1.69E-46 |
| MS.gene05914 | MS.gene91401 | 0.812698 | 3.72E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene91401 | 0.826783 | 2.24E-54 | -1.69E-46 |
| MS.gene059480 | MS.gene91401 | -0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene91401 | 0.831707 | 1.43E-55 | -1.69E-46 |
| MS.gene059683 | MS.gene91401 | 0.812933 | 3.30E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene91401 | 0.808901 | 2.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91401.t1 | MTR_1g105480 | 99.427 | 349 | 2 | 0 | 1 | 349 | 1 | 349 | 0.0 | 716 |
| MS.gene91401.t1 | MTR_4g081130 | 77.183 | 355 | 70 | 4 | 1 | 349 | 1 | 350 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91401.t1 | AT5G54770 | 79.429 | 350 | 67 | 3 | 4 | 349 | 1 | 349 | 0.0 | 561 |
Find 96 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTGAAGAATGAGGATT+TGG | 0.249214 | 1.3:+71905104 | None:intergenic |
| AAGTGAACCAGAGCTTATTT+TGG | 0.293889 | 1.3:-71903739 | MS.gene91401:CDS |
| GTTCCTGGTATGATTGTTAC+TGG | 0.328065 | 1.3:-71904325 | MS.gene91401:CDS |
| TGTGGACATGATGGTCCTTT+TGG | 0.329730 | 1.3:-71904463 | MS.gene91401:CDS |
| CATTTGGCATTGAAGGCATT+GGG | 0.344159 | 1.3:-71903798 | MS.gene91401:CDS |
| CGTCATCGTCGGTGCGGGTT+CGG | 0.365933 | 1.3:-71904896 | MS.gene91401:CDS |
| ACCGAGCCATGCACCGCCAC+CGG | 0.369028 | 1.3:+71904798 | None:intergenic |
| ATGATGGCGATACTGATGTT+TGG | 0.371853 | 1.3:+71904838 | None:intergenic |
| AGCTGCACATTTGGCATTGA+AGG | 0.371858 | 1.3:-71903805 | MS.gene91401:CDS |
| GGTATGATTGATCATGTTCC+TGG | 0.372899 | 1.3:-71904409 | MS.gene91401:CDS |
| TTGCTGGTGTTGTTACAAAC+TGG | 0.379842 | 1.3:-71904564 | MS.gene91401:CDS |
| CCGAGCCATGCACCGCCACC+GGG | 0.388024 | 1.3:+71904799 | None:intergenic |
| AGGACAGAAAGCTGCACATT+TGG | 0.390045 | 1.3:-71903814 | MS.gene91401:CDS |
| TATTTGTAGGGTCCAACATT+TGG | 0.390626 | 1.3:-71903852 | MS.gene91401:intron |
| TGTTGTTACAAACTGGGCTT+TGG | 0.398106 | 1.3:-71904557 | MS.gene91401:CDS |
| TTTGGAGCAATGATGATATC+AGG | 0.399325 | 1.3:-71903834 | MS.gene91401:CDS |
| TTGCATGGATCCTAATGTTA+TGG | 0.401616 | 1.3:-71904509 | MS.gene91401:CDS |
| ACCTTAGCTTCCATAACATT+AGG | 0.407939 | 1.3:+71904499 | None:intergenic |
| CCATTGAAGAATGAGGATTT+GGG | 0.411622 | 1.3:+71905105 | None:intergenic |
| AGAGACGATGGATTCTTTGA+TGG | 0.420701 | 1.3:+71904975 | None:intergenic |
| ACATTTGGCATTGAAGGCAT+TGG | 0.420776 | 1.3:-71903799 | MS.gene91401:CDS |
| TGATGGCGATACTGATGTTT+GGG | 0.421589 | 1.3:+71904839 | None:intergenic |
| GGGAGGAACAATGCAATTGA+TGG | 0.425697 | 1.3:-71903777 | MS.gene91401:CDS |
| TTGAAGGTGTTTATATCGTA+AGG | 0.427759 | 1.3:+71905006 | None:intergenic |
| CTTACAAGGGAAGTTGTTCC+TGG | 0.428163 | 1.3:-71904340 | MS.gene91401:CDS |
| CATCTCTTCCTCGATGAAAT+CGG | 0.434159 | 1.3:-71904736 | MS.gene91401:CDS |
| CAACCATGGCGGAGAAGAGC+TGG | 0.441613 | 1.3:+71904773 | None:intergenic |
| CCCGGTGGCGGTGCATGGCT+CGG | 0.443680 | 1.3:-71904799 | MS.gene91401:CDS |
| GTTAAGAGGTTGAAGAGTAT+TGG | 0.445858 | 1.3:-71904430 | MS.gene91401:CDS |
| GTGGAGGTGCGGGTAGCAAT+TGG | 0.448004 | 1.3:+71905078 | None:intergenic |
| ATGCTATTGTTCGTCTTACA+AGG | 0.448172 | 1.3:-71904354 | MS.gene91401:CDS |
| CCCAAATCCTCATTCTTCAA+TGG | 0.449478 | 1.3:-71905105 | MS.gene91401:CDS |
| GTGAAGGAAAACAGAGTTGC+TGG | 0.450665 | 1.3:-71904580 | MS.gene91401:CDS |
| TCAGCCCCGGTGGCGGTGCA+TGG | 0.454457 | 1.3:-71904804 | MS.gene91401:CDS |
| ATCGTCGGTGCGGGTTCGGC+CGG | 0.455969 | 1.3:-71904892 | MS.gene91401:CDS |
| TTCGTAAGCGCATGAAAGAC+CGG | 0.467780 | 1.3:+71904873 | None:intergenic |
| CGATTTCATCGAGGAAGAGA+TGG | 0.469540 | 1.3:+71904737 | None:intergenic |
| TTTGGCTTCTGCTGAATCAC+AGG | 0.481383 | 1.3:-71903721 | MS.gene91401:CDS |
| GGATTTGGGAGTTGAAGAGA+GGG | 0.481980 | 1.3:+71905119 | None:intergenic |
| TGGTCTTCCATTGAAGAATG+AGG | 0.487141 | 1.3:+71905098 | None:intergenic |
| TTTCAATGCTGTTGCTGCTG+AGG | 0.487900 | 1.3:-71904611 | MS.gene91401:CDS |
| TTTGATGACGGTGGAGGTGC+GGG | 0.488359 | 1.3:+71905068 | None:intergenic |
| GGTGGATTTGATGACGGTGG+AGG | 0.493483 | 1.3:+71905062 | None:intergenic |
| ATCATCATTGCTCCAAATGT+TGG | 0.493887 | 1.3:+71903840 | None:intergenic |
| GTGAGTTCTTGTGGACATGA+TGG | 0.494717 | 1.3:-71904472 | MS.gene91401:CDS |
| ATATCAAGTGCTTTCATCCC+AGG | 0.498595 | 1.3:+71904391 | None:intergenic |
| TGGTATGATTGTTACTGGTA+TGG | 0.499259 | 1.3:-71904320 | MS.gene91401:CDS |
| TCCTAATGTTATGGAAGCTA+AGG | 0.499413 | 1.3:-71904500 | MS.gene91401:CDS |
| GACGTCGTCATCGTCGGTGC+GGG | 0.500597 | 1.3:-71904901 | MS.gene91401:CDS |
| AGGATTTGGGAGTTGAAGAG+AGG | 0.501201 | 1.3:+71905118 | None:intergenic |
| TGCTGGTGTTGTTACAAACT+GGG | 0.501512 | 1.3:-71904563 | MS.gene91401:CDS |
| TTGGTGCTACTGGTGTTAAG+AGG | 0.502640 | 1.3:-71904444 | MS.gene91401:CDS |
| TGCAAGAAGCTTGCTCATGA+TGG | 0.508423 | 1.3:+71904651 | None:intergenic |
| TTTGATGGGTGCGAATTTGA+AGG | 0.512764 | 1.3:+71904990 | None:intergenic |
| TGGCCAGCTCTTCTCCGCCA+TGG | 0.524431 | 1.3:-71904776 | MS.gene91401:CDS |
| GAGACGATGGATTCTTTGAT+GGG | 0.528361 | 1.3:+71904976 | None:intergenic |
| CAATCCGTCAGCCCCGGTGG+CGG | 0.528507 | 1.3:-71904811 | MS.gene91401:CDS |
| TGCACCGCCACCGGGGCTGA+CGG | 0.530127 | 1.3:+71904807 | None:intergenic |
| CCATGCAAGATTGTGTATCA+TGG | 0.534946 | 1.3:+71904524 | None:intergenic |
| ATGGAAGTTGCTGAAATTGA+TGG | 0.535463 | 1.3:-71904301 | MS.gene91401:CDS |
| TGAAGGTGTTTATATCGTAA+GGG | 0.535810 | 1.3:+71905007 | None:intergenic |
| AATACCCCTAATGGCATCCA+TGG | 0.539198 | 1.3:-71905163 | None:intergenic |
| CCATGATACACAATCTTGCA+TGG | 0.547093 | 1.3:-71904524 | MS.gene91401:CDS |
| TCATCGAGGAAGAGATGGGC+TGG | 0.548914 | 1.3:+71904742 | None:intergenic |
| ATCGAACAATCCGTCAGCCC+CGG | 0.549798 | 1.3:-71904817 | MS.gene91401:CDS |
| ATTTGATGACGGTGGAGGTG+CGG | 0.553149 | 1.3:+71905067 | None:intergenic |
| GCAGAAGCCAAAATAAGCTC+TGG | 0.553231 | 1.3:+71903732 | None:intergenic |
| TTAACACCAGTAGCACCAAA+AGG | 0.554005 | 1.3:+71904448 | None:intergenic |
| AGTGAGAGATGCAGTGGCCA+TGG | 0.554618 | 1.3:+71905146 | None:intergenic |
| AAGGTTGTTGTGAGTTCTTG+TGG | 0.556055 | 1.3:-71904481 | MS.gene91401:CDS |
| GAAGGTGTTTATATCGTAAG+GGG | 0.560183 | 1.3:+71905008 | None:intergenic |
| CATATCTGTCATGTAACGAC+GGG | 0.569723 | 1.3:+71904942 | None:intergenic |
| GGTCATTTCACGAGAGACGA+TGG | 0.571046 | 1.3:+71904963 | None:intergenic |
| GACGATGACGACGTCGGTGT+CGG | 0.577296 | 1.3:+71904909 | None:intergenic |
| TGCTGAGGATTTGATTGTGA+AGG | 0.582701 | 1.3:-71904596 | MS.gene91401:CDS |
| GGAAGTAGTGAGAGATGCAG+TGG | 0.583000 | 1.3:+71905140 | None:intergenic |
| GGCTGGTTTGCGAACAACCA+TGG | 0.583743 | 1.3:+71904759 | None:intergenic |
| AATTGATGGTGCCCCAAGAA+TGG | 0.586166 | 1.3:-71904287 | MS.gene91401:intron |
| GATTTCATCGAGGAAGAGAT+GGG | 0.594086 | 1.3:+71904738 | None:intergenic |
| GACGACGTCGGTGTCGGCGT+AGG | 0.595030 | 1.3:+71904915 | None:intergenic |
| CGACGTCGTCATCGTCGGTG+CGG | 0.596105 | 1.3:-71904902 | MS.gene91401:CDS |
| TGGCATTGAAGGCATTGGGG+AGG | 0.601090 | 1.3:-71903794 | MS.gene91401:CDS |
| CGAGCCATGCACCGCCACCG+GGG | 0.601463 | 1.3:+71904800 | None:intergenic |
| GCTGACGGATTGTTCGATGA+TGG | 0.605605 | 1.3:+71904822 | None:intergenic |
| GACACCGACGTCGTCATCGT+CGG | 0.606029 | 1.3:-71904907 | MS.gene91401:CDS |
| TGCTATTGTTCGTCTTACAA+GGG | 0.611924 | 1.3:-71904353 | MS.gene91401:CDS |
| GTATGATTGATCATGTTCCT+GGG | 0.612511 | 1.3:-71904408 | MS.gene91401:CDS |
| AAGGTGTTTATATCGTAAGG+GGG | 0.614649 | 1.3:+71905009 | None:intergenic |
| ATTTGGCATTGAAGGCATTG+GGG | 0.623024 | 1.3:-71903797 | MS.gene91401:CDS |
| GAACAATCCGTCAGCCCCGG+TGG | 0.648251 | 1.3:-71904814 | MS.gene91401:CDS |
| TCATATCTGTCATGTAACGA+CGG | 0.659308 | 1.3:+71904941 | None:intergenic |
| GGTGGCGGTGCATGGCTCGG+TGG | 0.665089 | 1.3:-71904796 | MS.gene91401:CDS |
| ATACCAGTAACAATCATACC+AGG | 0.680671 | 1.3:+71904322 | None:intergenic |
| ATTCGACACCGATTTCATCG+AGG | 0.721644 | 1.3:+71904728 | None:intergenic |
| CGCACCGACGATGACGACGT+CGG | 0.729324 | 1.3:+71904903 | None:intergenic |
| TGGTTTGCGAACAACCATGG+CGG | 0.729876 | 1.3:+71904762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAACACTTATTATATA+AGG | - | chr1.3:71904864-71904883 | MS.gene91401:CDS | 10.0% |
| !!! | AGATAAAATAAATTTTTTGA+AGG | + | chr1.3:71904771-71904790 | None:intergenic | 10.0% |
| !!! | CTTTTTTATTTCAATTATTT+CGG | - | chr1.3:71904597-71904616 | MS.gene91401:CDS | 10.0% |
| !! | AGCATAAACACTTATTATAT+AGG | + | chr1.3:71904834-71904853 | None:intergenic | 20.0% |
| !! | ATAAGGCATAGAAAAATATT+GGG | - | chr1.3:71904881-71904900 | MS.gene91401:CDS | 20.0% |
| !! | TATAAGGCATAGAAAAATAT+TGG | - | chr1.3:71904880-71904899 | MS.gene91401:CDS | 20.0% |
| ! | AAAATATTTCAACTGCATGT+TGG | - | chr1.3:71904913-71904932 | MS.gene91401:CDS | 25.0% |
| ! | AAATATTTCAACTGCATGTT+GGG | - | chr1.3:71904914-71904933 | MS.gene91401:CDS | 25.0% |
| ! | ATAAAAAAGCTTACCATTCT+TGG | + | chr1.3:71904586-71904605 | None:intergenic | 25.0% |
| ! | ATTTGATTAAGATGTGCTAA+CGG | - | chr1.3:71904970-71904989 | MS.gene91401:CDS | 25.0% |
| ! | TAAAAAAGCTTACCATTCTT+GGG | + | chr1.3:71904585-71904604 | None:intergenic | 25.0% |
| ! | TAAGGCATAGAAAAATATTG+GGG | - | chr1.3:71904882-71904901 | MS.gene91401:CDS | 25.0% |
| ! | TTATTATATAGGCAAGTGTT+TGG | + | chr1.3:71904823-71904842 | None:intergenic | 25.0% |
| !!! | TTTTGTTGGTGATATTTGTA+GGG | - | chr1.3:71904993-71905012 | MS.gene91401:CDS | 25.0% |
| AAAAAAGCTTACCATTCTTG+GGG | + | chr1.3:71904584-71904603 | None:intergenic | 30.0% | |
| AAGGCATAGAAAAATATTGG+GGG | - | chr1.3:71904883-71904902 | MS.gene91401:CDS | 30.0% | |
| AGAAGTTGTTTATCCAAACA+AGG | - | chr1.3:71904797-71904816 | MS.gene91401:CDS | 30.0% | |
| TTGTGTGTTTGTGATAAGTT+AGG | - | chr1.3:71904638-71904657 | MS.gene91401:CDS | 30.0% | |
| ! | GCATTGAAAAGTTTTACGTT+AGG | + | chr1.3:71904235-71904254 | None:intergenic | 30.0% |
| !! | TGAAGGTGTTTATATCGTAA+GGG | + | chr1.3:71903853-71903872 | None:intergenic | 30.0% |
| !! | TTGAAGGTGTTTATATCGTA+AGG | + | chr1.3:71903854-71903873 | None:intergenic | 30.0% |
| !!! | GTTTTGTTGGTGATATTTGT+AGG | - | chr1.3:71904992-71905011 | MS.gene91401:CDS | 30.0% |
| !!! | TAGTGACATGGTGATTTTTT+GGG | + | chr1.3:71903822-71903841 | None:intergenic | 30.0% |
| !!! | TTAGTGACATGGTGATTTTT+TGG | + | chr1.3:71903823-71903842 | None:intergenic | 30.0% |
| ACCTTAGCTTCCATAACATT+AGG | + | chr1.3:71904361-71904380 | None:intergenic | 35.0% | |
| AGGCATAGAAAAATATTGGG+GGG | - | chr1.3:71904884-71904903 | MS.gene91401:CDS | 35.0% | |
| ATACCAGTAACAATCATACC+AGG | + | chr1.3:71904538-71904557 | None:intergenic | 35.0% | |
| ATCATCATTGCTCCAAATGT+TGG | + | chr1.3:71905020-71905039 | None:intergenic | 35.0% | |
| ATGCTATTGTTCGTCTTACA+AGG | - | chr1.3:71904503-71904522 | MS.gene91401:CDS | 35.0% | |
| ATGGAAGTTGCTGAAATTGA+TGG | - | chr1.3:71904556-71904575 | MS.gene91401:CDS | 35.0% | |
| CCATTGAAGAATGAGGATTT+GGG | + | chr1.3:71903755-71903774 | None:intergenic | 35.0% | |
| GATGCAATTTGGAGATGATA+AGG | - | chr1.3:71904944-71904963 | MS.gene91401:CDS | 35.0% | |
| GTATGATTGATCATGTTCCT+GGG | - | chr1.3:71904449-71904468 | MS.gene91401:CDS | 35.0% | |
| TATTTGTAGGGTCCAACATT+TGG | - | chr1.3:71905005-71905024 | MS.gene91401:CDS | 35.0% | |
| TCATATCTGTCATGTAACGA+CGG | + | chr1.3:71903919-71903938 | None:intergenic | 35.0% | |
| TCCATTGAAGAATGAGGATT+TGG | + | chr1.3:71903756-71903775 | None:intergenic | 35.0% | |
| TCCTAATGTTATGGAAGCTA+AGG | - | chr1.3:71904357-71904376 | MS.gene91401:CDS | 35.0% | |
| TGCTATTGTTCGTCTTACAA+GGG | - | chr1.3:71904504-71904523 | MS.gene91401:CDS | 35.0% | |
| TGGTATGATTGTTACTGGTA+TGG | - | chr1.3:71904537-71904556 | MS.gene91401:CDS | 35.0% | |
| TTGCATGGATCCTAATGTTA+TGG | - | chr1.3:71904348-71904367 | MS.gene91401:CDS | 35.0% | |
| ! | AAGGTGTTTATATCGTAAGG+GGG | + | chr1.3:71903851-71903870 | None:intergenic | 35.0% |
| ! | AAGTGAACCAGAGCTTATTT+TGG | - | chr1.3:71905118-71905137 | MS.gene91401:CDS | 35.0% |
| ! | GTTAAGAGGTTGAAGAGTAT+TGG | - | chr1.3:71904427-71904446 | MS.gene91401:CDS | 35.0% |
| ! | TTTGGAGCAATGATGATATC+AGG | - | chr1.3:71905023-71905042 | MS.gene91401:CDS | 35.0% |
| !! | GAAGGTGTTTATATCGTAAG+GGG | + | chr1.3:71903852-71903871 | None:intergenic | 35.0% |
| !! | GATACTGATGTTTGGGTTTT+TGG | + | chr1.3:71904014-71904033 | None:intergenic | 35.0% |
| !!! | AGTGACATGGTGATTTTTTG+GGG | + | chr1.3:71903821-71903840 | None:intergenic | 35.0% |
| AAGGTTGTTGTGAGTTCTTG+TGG | - | chr1.3:71904376-71904395 | MS.gene91401:CDS | 40.0% | |
| ATATCAAGTGCTTTCATCCC+AGG | + | chr1.3:71904469-71904488 | None:intergenic | 40.0% | |
| CATATCTGTCATGTAACGAC+GGG | + | chr1.3:71903918-71903937 | None:intergenic | 40.0% | |
| CATCTCTTCCTCGATGAAAT+CGG | - | chr1.3:71904121-71904140 | MS.gene91401:intron | 40.0% | |
| CCATGATACACAATCTTGCA+TGG | - | chr1.3:71904333-71904352 | MS.gene91401:CDS | 40.0% | |
| CCATGCAAGATTGTGTATCA+TGG | + | chr1.3:71904336-71904355 | None:intergenic | 40.0% | |
| CCCAAATCCTCATTCTTCAA+TGG | - | chr1.3:71903752-71903771 | MS.gene91401:CDS | 40.0% | |
| GATTTCATCGAGGAAGAGAT+GGG | + | chr1.3:71904122-71904141 | None:intergenic | 40.0% | |
| GGTATGATTGATCATGTTCC+TGG | - | chr1.3:71904448-71904467 | MS.gene91401:CDS | 40.0% | |
| GTTCCTGGTATGATTGTTAC+TGG | - | chr1.3:71904532-71904551 | MS.gene91401:CDS | 40.0% | |
| TATTTCAACTGCATGTTGGG+TGG | - | chr1.3:71904917-71904936 | MS.gene91401:CDS | 40.0% | |
| TGCTGAGGATTTGATTGTGA+AGG | - | chr1.3:71904261-71904280 | MS.gene91401:intron | 40.0% | |
| TGGTCTTCCATTGAAGAATG+AGG | + | chr1.3:71903762-71903781 | None:intergenic | 40.0% | |
| TGTTGTTACAAACTGGGCTT+TGG | - | chr1.3:71904300-71904319 | MS.gene91401:CDS | 40.0% | |
| TTAACACCAGTAGCACCAAA+AGG | + | chr1.3:71904412-71904431 | None:intergenic | 40.0% | |
| ! | ACATTTGGCATTGAAGGCAT+TGG | - | chr1.3:71905058-71905077 | MS.gene91401:CDS | 40.0% |
| ! | AGAGACGATGGATTCTTTGA+TGG | + | chr1.3:71903885-71903904 | None:intergenic | 40.0% |
| ! | ATGATGGCGATACTGATGTT+TGG | + | chr1.3:71904022-71904041 | None:intergenic | 40.0% |
| ! | GAGACGATGGATTCTTTGAT+GGG | + | chr1.3:71903884-71903903 | None:intergenic | 40.0% |
| ! | TGATGGCGATACTGATGTTT+GGG | + | chr1.3:71904021-71904040 | None:intergenic | 40.0% |
| ! | TTTGATGGGTGCGAATTTGA+AGG | + | chr1.3:71903870-71903889 | None:intergenic | 40.0% |
| !! | AGATGTGCTAACGGTTTTGT+TGG | - | chr1.3:71904979-71904998 | MS.gene91401:CDS | 40.0% |
| !! | ATTTGGCATTGAAGGCATTG+GGG | - | chr1.3:71905060-71905079 | MS.gene91401:CDS | 40.0% |
| !! | CATTTGGCATTGAAGGCATT+GGG | - | chr1.3:71905059-71905078 | MS.gene91401:CDS | 40.0% |
| !! | TGCTGGTGTTGTTACAAACT+GGG | - | chr1.3:71904294-71904313 | MS.gene91401:CDS | 40.0% |
| !! | TTGCTGGTGTTGTTACAAAC+TGG | - | chr1.3:71904293-71904312 | MS.gene91401:CDS | 40.0% |
| !!! | GTGACATGGTGATTTTTTGG+GGG | + | chr1.3:71903820-71903839 | None:intergenic | 40.0% |
| !!! | TGACATGGTGATTTTTTGGG+GGG | + | chr1.3:71903819-71903838 | None:intergenic | 40.0% |
| AGGACAGAAAGCTGCACATT+TGG | - | chr1.3:71905043-71905062 | MS.gene91401:CDS | 45.0% | |
| AGGATTTGGGAGTTGAAGAG+AGG | + | chr1.3:71903742-71903761 | None:intergenic | 45.0% | |
| CGATTTCATCGAGGAAGAGA+TGG | + | chr1.3:71904123-71904142 | None:intergenic | 45.0% | |
| CTTACAAGGGAAGTTGTTCC+TGG | - | chr1.3:71904517-71904536 | MS.gene91401:CDS | 45.0% | |
| GCAGAAGCCAAAATAAGCTC+TGG | + | chr1.3:71905128-71905147 | None:intergenic | 45.0% | |
| GGATTTGGGAGTTGAAGAGA+GGG | + | chr1.3:71903741-71903760 | None:intergenic | 45.0% | |
| GGGAGGAACAATGCAATTGA+TGG | - | chr1.3:71905080-71905099 | MS.gene91401:CDS | 45.0% | |
| GTGAAGGAAAACAGAGTTGC+TGG | - | chr1.3:71904277-71904296 | MS.gene91401:intron | 45.0% | |
| GTGAGTTCTTGTGGACATGA+TGG | - | chr1.3:71904385-71904404 | MS.gene91401:CDS | 45.0% | |
| GTTTATATCGTAAGGGGGTG+TGG | + | chr1.3:71903846-71903865 | None:intergenic | 45.0% | |
| TTCGTAAGCGCATGAAAGAC+CGG | + | chr1.3:71903987-71904006 | None:intergenic | 45.0% | |
| TTTCAATGCTGTTGCTGCTG+AGG | - | chr1.3:71904246-71904265 | MS.gene91401:intron | 45.0% | |
| ! | AGCTGCACATTTGGCATTGA+AGG | - | chr1.3:71905052-71905071 | MS.gene91401:CDS | 45.0% |
| ! | TGCAAGAAGCTTGCTCATGA+TGG | + | chr1.3:71904209-71904228 | None:intergenic | 45.0% |
| ! | TGTGGACATGATGGTCCTTT+TGG | - | chr1.3:71904394-71904413 | MS.gene91401:CDS | 45.0% |
| ! | TTTGGCTTCTGCTGAATCAC+AGG | - | chr1.3:71905136-71905155 | MS.gene91401:CDS | 45.0% |
| !! | AATTGATGGTGCCCCAAGAA+TGG | - | chr1.3:71904570-71904589 | MS.gene91401:CDS | 45.0% |
| !! | ATTCGACACCGATTTCATCG+AGG | + | chr1.3:71904132-71904151 | None:intergenic | 45.0% |
| !! | TGGGTGGTTCTGATGCAATT+TGG | - | chr1.3:71904933-71904952 | MS.gene91401:CDS | 45.0% |
| !! | TTGGTGCTACTGGTGTTAAG+AGG | - | chr1.3:71904413-71904432 | MS.gene91401:CDS | 45.0% |
| GGAAGTAGTGAGAGATGCAG+TGG | + | chr1.3:71903720-71903739 | None:intergenic | 50.0% | |
| GGTCATTTCACGAGAGACGA+TGG | + | chr1.3:71903897-71903916 | None:intergenic | 50.0% | |
| ! | TGGTTTGCGAACAACCATGG+CGG | + | chr1.3:71904098-71904117 | None:intergenic | 50.0% |
| ! | TTGGGGGGTGGATTTGATGA+CGG | + | chr1.3:71903804-71903823 | None:intergenic | 50.0% |
| !! | ATTTGATGACGGTGGAGGTG+CGG | + | chr1.3:71903793-71903812 | None:intergenic | 50.0% |
| !! | GCTGACGGATTGTTCGATGA+TGG | + | chr1.3:71904038-71904057 | None:intergenic | 50.0% |
| !! | GGCAAGTGTTTGGCCTTGTT+TGG | + | chr1.3:71904813-71904832 | None:intergenic | 50.0% |
| !!! | CATGGTGATTTTTTGGGGGG+TGG | + | chr1.3:71903816-71903835 | None:intergenic | 50.0% |
| !!! | GATGGTCCTTTTGGTGCTAC+TGG | - | chr1.3:71904403-71904422 | MS.gene91401:CDS | 50.0% |
| AGTGAGAGATGCAGTGGCCA+TGG | + | chr1.3:71903714-71903733 | None:intergenic | 55.0% | |
| ATCGAACAATCCGTCAGCCC+CGG | - | chr1.3:71904040-71904059 | MS.gene91401:intron | 55.0% | |
| TCATCGAGGAAGAGATGGGC+TGG | + | chr1.3:71904118-71904137 | None:intergenic | 55.0% | |
| ! | AGGGGGTGTGGTTAGTGACA+TGG | + | chr1.3:71903834-71903853 | None:intergenic | 55.0% |
| !! | GGCTGGTTTGCGAACAACCA+TGG | + | chr1.3:71904101-71904120 | None:intergenic | 55.0% |
| !! | GGTGGATTTGATGACGGTGG+AGG | + | chr1.3:71903798-71903817 | None:intergenic | 55.0% |
| !! | TGGCATTGAAGGCATTGGGG+AGG | - | chr1.3:71905063-71905082 | MS.gene91401:CDS | 55.0% |
| !! | TTTGATGACGGTGGAGGTGC+GGG | + | chr1.3:71903792-71903811 | None:intergenic | 55.0% |
| GACACCGACGTCGTCATCGT+CGG | - | chr1.3:71903950-71903969 | MS.gene91401:intron | 60.0% | |
| GACGATGACGACGTCGGTGT+CGG | + | chr1.3:71903951-71903970 | None:intergenic | 60.0% | |
| ! | CAACCATGGCGGAGAAGAGC+TGG | + | chr1.3:71904087-71904106 | None:intergenic | 60.0% |
| ! | GTGGAGGTGCGGGTAGCAAT+TGG | + | chr1.3:71903782-71903801 | None:intergenic | 60.0% |
| !! | GGGGGTGGATTTGATGACGG+TGG | + | chr1.3:71903801-71903820 | None:intergenic | 60.0% |
| CGACGTCGTCATCGTCGGTG+CGG | - | chr1.3:71903955-71903974 | MS.gene91401:intron | 65.0% | |
| CGTCATCGTCGGTGCGGGTT+CGG | - | chr1.3:71903961-71903980 | MS.gene91401:intron | 65.0% | |
| GAACAATCCGTCAGCCCCGG+TGG | - | chr1.3:71904043-71904062 | MS.gene91401:intron | 65.0% | |
| GACGTCGTCATCGTCGGTGC+GGG | - | chr1.3:71903956-71903975 | MS.gene91401:intron | 65.0% | |
| TGGCCAGCTCTTCTCCGCCA+TGG | - | chr1.3:71904081-71904100 | MS.gene91401:intron | 65.0% | |
| ! | CGCACCGACGATGACGACGT+CGG | + | chr1.3:71903957-71903976 | None:intergenic | 65.0% |
| ACCGAGCCATGCACCGCCAC+CGG | + | chr1.3:71904062-71904081 | None:intergenic | 70.0% | |
| ATCGTCGGTGCGGGTTCGGC+CGG | - | chr1.3:71903965-71903984 | MS.gene91401:intron | 70.0% | |
| CAATCCGTCAGCCCCGGTGG+CGG | - | chr1.3:71904046-71904065 | MS.gene91401:intron | 70.0% | |
| !! | GACGACGTCGGTGTCGGCGT+AGG | + | chr1.3:71903945-71903964 | None:intergenic | 70.0% |
| CCGAGCCATGCACCGCCACC+GGG | + | chr1.3:71904061-71904080 | None:intergenic | 75.0% | |
| CGAGCCATGCACCGCCACCG+GGG | + | chr1.3:71904060-71904079 | None:intergenic | 75.0% | |
| TGCACCGCCACCGGGGCTGA+CGG | + | chr1.3:71904053-71904072 | None:intergenic | 75.0% | |
| ! | CCCGGTGGCGGTGCATGGCT+CGG | - | chr1.3:71904058-71904077 | MS.gene91401:intron | 75.0% |
| ! | GGTGGCGGTGCATGGCTCGG+TGG | - | chr1.3:71904061-71904080 | MS.gene91401:intron | 75.0% |
| ! | TCAGCCCCGGTGGCGGTGCA+TGG | - | chr1.3:71904053-71904072 | MS.gene91401:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71903704 | 71905175 | 71903704 | ID=MS.gene91401 |
| chr1.3 | mRNA | 71903704 | 71905175 | 71903704 | ID=MS.gene91401.t1;Parent=MS.gene91401 |
| chr1.3 | exon | 71904288 | 71905175 | 71904288 | ID=MS.gene91401.t1.exon1;Parent=MS.gene91401.t1 |
| chr1.3 | CDS | 71904288 | 71905175 | 71904288 | ID=cds.MS.gene91401.t1;Parent=MS.gene91401.t1 |
| chr1.3 | exon | 71903704 | 71903865 | 71903704 | ID=MS.gene91401.t1.exon2;Parent=MS.gene91401.t1 |
| chr1.3 | CDS | 71903704 | 71903865 | 71903704 | ID=cds.MS.gene91401.t1;Parent=MS.gene91401.t1 |
| Gene Sequence |
| Protein sequence |
