AlfalfaGEDB | MS.gene91401

M. sativa cultivar XinJiangDaYe / MS.gene91401

KEGG: K03146
GO: GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01946.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91401.t1	XP_013469882.1	99.4	349	2	0	1	349	1	349	3.00E-189	671

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91401.t1	O23787	80.1	356	64	3	1	349	1	356	7.0e-155	548.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91401.t1	A0A072W0W5	99.4	349	2	0	1	349	1	349	2.1e-189	671.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene91401	0.81682	4.54E-52	-1.69E-46
MS.gene049257	MS.gene91401	0.800002	1.77E-48	-1.69E-46
MS.gene050315	MS.gene91401	0.822011	2.98E-53	-1.69E-46
MS.gene05081	MS.gene91401	0.80879	2.60E-50	-1.69E-46
MS.gene050811	MS.gene91401	-0.82541	4.76E-54	-1.69E-46
MS.gene051838	MS.gene91401	0.816826	4.53E-52	-1.69E-46
MS.gene054343	MS.gene91401	0.84001	1.12E-57	-1.69E-46
MS.gene054344	MS.gene91401	0.812205	4.77E-51	-1.69E-46
MS.gene055370	MS.gene91401	0.829434	5.16E-55	-1.69E-46
MS.gene056633	MS.gene91401	0.814205	1.73E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91401.t1	MTR_1g105480	99.427	349	2	0	1	349	1	349	0.0	716
MS.gene91401.t1	MTR_4g081130	77.183	355	70	4	1	349	1	350	0.0	546

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91401.t1	AT5G54770	79.429	350	67	3	4	349	1	349	0.0	561

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Find 96 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTGTTTATATCGTAAGG+GGG	0.614649	1.3:+71905009	None:intergenic
AAGGTTGTTGTGAGTTCTTG+TGG	0.556055	1.3:-71904481	MS.gene91401:CDS
AAGTGAACCAGAGCTTATTT+TGG	0.293889	1.3:-71903739	MS.gene91401:CDS
AATACCCCTAATGGCATCCA+TGG	0.539198	1.3:-71905163	None:intergenic
AATTGATGGTGCCCCAAGAA+TGG	0.586166	1.3:-71904287	MS.gene91401:intron
ACATTTGGCATTGAAGGCAT+TGG	0.420776	1.3:-71903799	MS.gene91401:CDS
ACCGAGCCATGCACCGCCAC+CGG	0.369028	1.3:+71904798	None:intergenic
ACCTTAGCTTCCATAACATT+AGG	0.407939	1.3:+71904499	None:intergenic
AGAGACGATGGATTCTTTGA+TGG	0.420701	1.3:+71904975	None:intergenic
AGCTGCACATTTGGCATTGA+AGG	0.371858	1.3:-71903805	MS.gene91401:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGCTTACCATTCTTG+GGG	+	chr1.3:71904584-71904603	None:intergenic	30.0%
AAGGCATAGAAAAATATTGG+GGG	-	chr1.3:71904883-71904902	MS.gene91401:CDS	30.0%
AGAAGTTGTTTATCCAAACA+AGG	-	chr1.3:71904797-71904816	MS.gene91401:CDS	30.0%
TTGTGTGTTTGTGATAAGTT+AGG	-	chr1.3:71904638-71904657	MS.gene91401:CDS	30.0%
ACCTTAGCTTCCATAACATT+AGG	+	chr1.3:71904361-71904380	None:intergenic	35.0%
AGGCATAGAAAAATATTGGG+GGG	-	chr1.3:71904884-71904903	MS.gene91401:CDS	35.0%
ATACCAGTAACAATCATACC+AGG	+	chr1.3:71904538-71904557	None:intergenic	35.0%
ATCATCATTGCTCCAAATGT+TGG	+	chr1.3:71905020-71905039	None:intergenic	35.0%
ATGCTATTGTTCGTCTTACA+AGG	-	chr1.3:71904503-71904522	MS.gene91401:CDS	35.0%
ATGGAAGTTGCTGAAATTGA+TGG	-	chr1.3:71904556-71904575	MS.gene91401:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	71903704	71905175	71903704	ID=MS.gene91401
chr1.3	mRNA	71903704	71905175	71903704	ID=MS.gene91401.t1;Parent=MS.gene91401
chr1.3	exon	71904288	71905175	71904288	ID=MS.gene91401.t1.exon1;Parent=MS.gene91401.t1
chr1.3	CDS	71904288	71905175	71904288	ID=cds.MS.gene91401.t1;Parent=MS.gene91401.t1
chr1.3	exon	71903704	71903865	71903704	ID=MS.gene91401.t1.exon2;Parent=MS.gene91401.t1
chr1.3	CDS	71903704	71903865	71903704	ID=cds.MS.gene91401.t1;Parent=MS.gene91401.t1

Gene Sequence

>MS.gene91401

ATGGCATCCATGGCCACTGCATCTCTCACTACTTCCCTCTCTTCAACTCCCAAATCCTCATTCTTCAATGGAAGACCAATTGCTACCCGCACCTCCACCGTCATCAAATCCACCCCCCAAAAAATCACCATGTCACTAACCACACCCCCTTACGATATAAACACCTTCAAATTCGCACCCATCAAAGAATCCATCGTCTCTCGTGAAATGACCCGTCGTTACATGACAGATATGATCACCTACGCCGACACCGACGTCGTCATCGTCGGTGCGGGTTCGGCCGGTCTTTCATGCGCTTACGAATTATCCAAAAACCCAAACATCAGTATCGCCATCATCGAACAATCCGTCAGCCCCGGTGGCGGTGCATGGCTCGGTGGCCAGCTCTTCTCCGCCATGGTTGTTCGCAAACCAGCCCATCTCTTCCTCGATGAAATCGGTGTCGAATATGATGAACAAGAAGACTACGTTGTCATCAAACACGCTGCTCTATTCACTTCAACCATCATGAGCAAGCTTCTTGCAAAACCTAACGTAAAACTTTTCAATGCTGTTGCTGCTGAGGATTTGATTGTGAAGGAAAACAGAGTTGCTGGTGTTGTTACAAACTGGGCTTTGGTTTCGATGAACCATGATACACAATCTTGCATGGATCCTAATGTTATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGGTGCTACTGGTGTTAAGAGGTTGAAGAGTATTGGTATGATTGATCATGTTCCTGGGATGAAAGCACTTGATATGAATACTGCTGAAGATGCTATTGTTCGTCTTACAAGGGAAGTTGTTCCTGGTATGATTGTTACTGGTATGGAAGTTGCTGAAATTGATGGTGCCCCAAGAATGGTAAGCTTTTTTATTTCAATTATTTCGGCACAAGCTTAATTAAATTTTGTGTGTTTGTGATAAGTTAGGATTGAATTATTAGAACTTGTACAATGACATATAAGTATTTGTGAATAATAGCTTTTGAAAATAGTTTATAGTTTATACTATATCGATTTATTTTATATTATCTTTTTCCTTCAAAAAATTTATTTTATCTTTGCAAAGAAGTTGTTTATCCAAACAAGGCCAAACACTTGCCTATATAATAAGTGTTTATGCTATCAGCAGTTAATTAAACACTTATTATATAAGGCATAGAAAAATATTGGGGGGTATAGAAAAATATTTCAACTGCATGTTGGGTGGTTCTGATGCAATTTGGAGATGATAAGGAACATTTGATTAAGATGTGCTAACGGTTTTGTTGGTGATATTTGTAGGGTCCAACATTTGGAGCAATGATGATATCAGGACAGAAAGCTGCACATTTGGCATTGAAGGCATTGGGGAGGAACAATGCAATTGATGGAACATGTGAATCTGCAAGTGAACCAGAGCTTATTTTGGCTTCTGCTGAATCACAGGACACTGTTGATGCTTAA

Protein sequence

>MS.gene91401.t1

MASMATASLTTSLSSTPKSSFFNGRPIATRTSTVIKSTPQKITMSLTTPPYDINTFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNISIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVEYDEQEDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKENRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRNNAIDGTCESASEPELILASAESQDTVDA