Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91485.t1 | KEH38942.1 | 83.9 | 285 | 33 | 4 | 1 | 278 | 1 | 279 | 1.40E-56 | 229.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91485.t1 | Q8LJS2 | 59.1 | 298 | 99 | 4 | 1 | 278 | 1 | 295 | 1.4e-41 | 171.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91485.t1 | A0A072VB01 | 83.9 | 285 | 33 | 4 | 1 | 278 | 1 | 279 | 1.0e-56 | 229.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91485.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049441 | MS.gene91485 | 0.834038 | 3.78E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene91485 | 0.813516 | 2.46E-51 | -1.69E-46 |
| MS.gene050352 | MS.gene91485 | 0.809117 | 2.22E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene91485 | 0.808662 | 2.77E-50 | -1.69E-46 |
| MS.gene051791 | MS.gene91485 | 0.809856 | 1.54E-50 | -1.69E-46 |
| MS.gene052717 | MS.gene91485 | 0.847803 | 9.18E-60 | -1.69E-46 |
| MS.gene053122 | MS.gene91485 | 0.832978 | 6.94E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene91485 | 0.813464 | 2.53E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene91485 | 0.819869 | 9.26E-53 | -1.69E-46 |
| MS.gene056170 | MS.gene91485 | 0.804444 | 2.15E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene91485 | 0.829056 | 6.37E-55 | -1.69E-46 |
| MS.gene056466 | MS.gene91485 | 0.805591 | 1.24E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene91485 | 0.830435 | 2.94E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene91485 | 0.821155 | 4.69E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene91485 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene91485 | -0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene059900 | MS.gene91485 | -0.81087 | 9.30E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene91485 | 0.818096 | 2.34E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene91485 | 0.802427 | 5.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91485.t1 | MTR_2g084815 | 81.046 | 306 | 26 | 5 | 1 | 278 | 1 | 302 | 3.33e-146 | 412 |
| MS.gene91485.t1 | MTR_2g084815 | 85.017 | 287 | 26 | 5 | 1 | 278 | 1 | 279 | 2.51e-145 | 409 |
| MS.gene91485.t1 | MTR_2g084815 | 79.352 | 247 | 19 | 5 | 1 | 219 | 1 | 243 | 3.19e-100 | 293 |
| MS.gene91485.t1 | MTR_2g084815 | 77.523 | 218 | 17 | 5 | 1 | 190 | 1 | 214 | 8.60e-79 | 239 |
| MS.gene91485.t1 | MTR_4g055440 | 47.773 | 247 | 116 | 5 | 1 | 244 | 5 | 241 | 3.18e-55 | 179 |
| MS.gene91485.t1 | MTR_8g069135 | 80.952 | 105 | 13 | 3 | 118 | 220 | 23 | 122 | 3.96e-35 | 129 |
| MS.gene91485.t1 | MTR_4g055450 | 39.801 | 201 | 90 | 4 | 2 | 186 | 6 | 191 | 3.48e-26 | 105 |
| MS.gene91485.t1 | MTR_4g055450 | 53.125 | 96 | 34 | 4 | 183 | 275 | 270 | 357 | 2.63e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91485.t1 | AT5G03740 | 40.850 | 306 | 138 | 10 | 1 | 277 | 1 | 292 | 2.68e-45 | 154 |
| MS.gene91485.t1 | AT5G22650 | 41.096 | 292 | 135 | 9 | 1 | 263 | 1 | 284 | 1.55e-36 | 132 |
| MS.gene91485.t1 | AT5G22650 | 40.956 | 293 | 135 | 10 | 1 | 263 | 1 | 285 | 7.23e-35 | 127 |
| MS.gene91485.t1 | AT3G44750 | 51.087 | 92 | 42 | 2 | 1 | 92 | 1 | 89 | 1.06e-23 | 96.7 |
| MS.gene91485.t1 | AT3G44750 | 51.087 | 92 | 42 | 2 | 1 | 92 | 1 | 89 | 1.13e-23 | 96.7 |
| MS.gene91485.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.54e-15 | 72.0 |
| MS.gene91485.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.98e-15 | 71.6 |
| MS.gene91485.t1 | AT2G27840 | 41.111 | 90 | 48 | 3 | 1 | 88 | 1 | 87 | 3.90e-15 | 72.8 |
Find 57 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTCCAATGGAGTTT+TGG | 0.108547 | 2.1:-16581519 | None:intergenic |
| GGAGTCTTTCCTCCTTTCTT+AGG | 0.172756 | 2.1:+16578836 | None:intergenic |
| TCCTCCAGACTTGGGAGTTT+TGG | 0.188316 | 2.1:+16578802 | None:intergenic |
| GAAACTTTCTCCTCTGCTTT+TGG | 0.222005 | 2.1:+16580194 | None:intergenic |
| GATGAATCTGATGATGAAAA+TGG | 0.302701 | 2.1:-16580071 | MS.gene91485:CDS |
| TGGGGAACAAAAGCTTGTTT+TGG | 0.309523 | 2.1:-16581004 | MS.gene91485:CDS |
| GAAAGTTTCAGAACCTAAAA+AGG | 0.314257 | 2.1:-16580180 | MS.gene91485:CDS |
| TTTGATTTCTTGGTAGAAAC+TGG | 0.315658 | 2.1:+16579556 | None:intergenic |
| CATTGGGCCTCTTCTTTCCC+TGG | 0.324129 | 2.1:+16579596 | None:intergenic |
| TCTTCATCTTCCTCATCCTT+TGG | 0.331069 | 2.1:+16580110 | None:intergenic |
| TGAATTAGGTGCTGAGGTTA+AGG | 0.360277 | 2.1:-16581241 | MS.gene91485:intron |
| TTTAGCAGGTGCAGCATTCT+TGG | 0.365068 | 2.1:+16580151 | None:intergenic |
| TGTGAATAGCAGCTGCTTCA+TGG | 0.368584 | 2.1:+16581187 | None:intergenic |
| AGGACATTCAACTCTGAAAC+TGG | 0.374828 | 2.1:-16578644 | MS.gene91485:CDS |
| TGGTTATTTACCTCAAAGTT+GGG | 0.376973 | 2.1:-16581023 | MS.gene91485:CDS |
| GAGTCTTTCCTCCTTTCTTA+GGG | 0.383477 | 2.1:+16578837 | None:intergenic |
| TTCTGCTCTGTGTTAATCAA+TGG | 0.388646 | 2.1:+16580322 | None:intergenic |
| GCAGCTGCTTCATGGTCATA+TGG | 0.391749 | 2.1:+16581195 | None:intergenic |
| GAAATGAACACTAGCAGCTT+TGG | 0.398995 | 2.1:+16580903 | None:intergenic |
| TAAATAACCACAGGCTCGTT+TGG | 0.405456 | 2.1:+16581036 | None:intergenic |
| GTGGTTATTTACCTCAAAGT+TGG | 0.423882 | 2.1:-16581024 | MS.gene91485:CDS |
| GATGCCAAAACTCCCAAGTC+TGG | 0.432291 | 2.1:-16578806 | MS.gene91485:CDS |
| AGCTGCTATTCACATTTCTC+AGG | 0.433247 | 2.1:-16581178 | MS.gene91485:intron |
| TTGGTCTCACCAGTCTTCTC+AGG | 0.439494 | 2.1:+16579523 | None:intergenic |
| TCTTGATATTGTCCTTGAAA+AGG | 0.456315 | 2.1:-16580947 | MS.gene91485:CDS |
| TTGTTAGATGGTAAGAAAGC+TGG | 0.456417 | 2.1:-16578878 | MS.gene91485:intron |
| TTAGGTGCTGAGGTTAAGGT+TGG | 0.459431 | 2.1:-16581237 | MS.gene91485:intron |
| TTTCCTCCTTTCTTAGGGTG+AGG | 0.460085 | 2.1:+16578842 | None:intergenic |
| AGAGAGTCCTCCTCCAGACT+TGG | 0.471298 | 2.1:+16578793 | None:intergenic |
| ACTTCACTTAGCAGCATGCT+TGG | 0.492494 | 2.1:+16578601 | None:intergenic |
| TCTGCTCTGTGTTAATCAAT+GGG | 0.495154 | 2.1:+16580323 | None:intergenic |
| ACAACCTTCACGTGTTTAGC+AGG | 0.509884 | 2.1:+16580137 | None:intergenic |
| CAGCTGCTTCATGGTCATAT+GGG | 0.518931 | 2.1:+16581196 | None:intergenic |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.527324 | 2.1:-16579713 | MS.gene91485:intron |
| TGTGCCATTACCTTCTTCAC+AGG | 0.535491 | 2.1:+16579703 | None:intergenic |
| TGAGAGTGATGAGGATGATG+AGG | 0.559141 | 2.1:-16579734 | MS.gene91485:CDS |
| GAGAGTCCTCCTCCAGACTT+GGG | 0.565423 | 2.1:+16578794 | None:intergenic |
| GCAACTCCTCACCCTAAGAA+AGG | 0.566808 | 2.1:-16578848 | MS.gene91485:CDS |
| AATGCTACTCCTGAGAAGAC+TGG | 0.569825 | 2.1:-16579532 | MS.gene91485:intron |
| AGGTTACCCCAAAACTCCAT+TGG | 0.575655 | 2.1:+16581511 | None:intergenic |
| GGTTGTTGATCCAAAGGATG+AGG | 0.576616 | 2.1:-16580120 | MS.gene91485:CDS |
| CGTGAAGGTTGTTGATCCAA+AGG | 0.578956 | 2.1:-16580126 | MS.gene91485:CDS |
| GTTATTGTATAGGTTGCACT+TGG | 0.583377 | 2.1:-16581078 | MS.gene91485:intron |
| AAAACTCCCAAGTCTGGAGG+AGG | 0.583660 | 2.1:-16578800 | MS.gene91485:CDS |
| TTGATTAACACAGAGCAGAA+TGG | 0.601793 | 2.1:-16580319 | MS.gene91485:intron |
| GGTTATTTACCTCAAAGTTG+GGG | 0.606552 | 2.1:-16581022 | MS.gene91485:CDS |
| AAAACCAGAACCAAAAGCAG+AGG | 0.625041 | 2.1:-16580204 | MS.gene91485:CDS |
| TGGACTGCAACAACATAGCA+AGG | 0.629185 | 2.1:-16578624 | MS.gene91485:CDS |
| AAATGGAAGCTCTGATGATG+AGG | 0.649458 | 2.1:-16580054 | MS.gene91485:intron |
| TGCACCTGCTAAACACGTGA+AGG | 0.650932 | 2.1:-16580141 | MS.gene91485:CDS |
| GCCAAAACTCCCAAGTCTGG+AGG | 0.652249 | 2.1:-16578803 | MS.gene91485:CDS |
| ACTTTGAGGTAAATAACCAC+AGG | 0.655718 | 2.1:+16581027 | None:intergenic |
| AGACAAACCAAACGAGCCTG+TGG | 0.660313 | 2.1:-16581043 | MS.gene91485:CDS |
| ACAATATCAAGAGAAATCTG+AGG | 0.664546 | 2.1:+16580958 | None:intergenic |
| ACTCCTCACCCTAAGAAAGG+AGG | 0.667582 | 2.1:-16578845 | MS.gene91485:CDS |
| AGATGATGATGAGAGTGATG+AGG | 0.674103 | 2.1:-16579743 | MS.gene91485:CDS |
| AGGTTGACCAGGGAAAGAAG+AGG | 0.740019 | 2.1:-16579603 | MS.gene91485:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTATTACTTTTAGA+TGG | - | chr2.1:16581384-16581403 | MS.gene91485:intron | 10.0% |
| !!! | ATTTTGTGATAAATATATAT+TGG | - | chr2.1:16580622-16580641 | MS.gene91485:intron | 10.0% |
| !!! | TAATAGTTTACATTTTATAT+TGG | - | chr2.1:16579584-16579603 | MS.gene91485:CDS | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | - | chr2.1:16581385-16581404 | MS.gene91485:intron | 10.0% |
| !! | AAAGGATATATATCTATATA+TGG | + | chr2.1:16581183-16581202 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | + | chr2.1:16581380-16581399 | None:intergenic | 15.0% |
| !! | AACTATATAATAACAAATCA+AGG | + | chr2.1:16579271-16579290 | None:intergenic | 15.0% |
| !! | TATAATTATTATGGTTACTA+CGG | - | chr2.1:16580457-16580476 | MS.gene91485:intron | 15.0% |
| !! | TTAAATTGTGTTAGATATTA+AGG | - | chr2.1:16581056-16581075 | MS.gene91485:CDS | 15.0% |
| !!! | TTTTAGATGATATTTTTCTA+AGG | - | chr2.1:16579300-16579319 | MS.gene91485:intron | 15.0% |
| !! | AAAAATTTAAACGCGAATTA+AGG | + | chr2.1:16581216-16581235 | None:intergenic | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | + | chr2.1:16581379-16581398 | None:intergenic | 20.0% |
| !! | ATCAAAAATTAAGAGTAGTT+CGG | + | chr2.1:16578748-16578767 | None:intergenic | 20.0% |
| !! | CAAACAATGTTTCAATTTAA+GGG | + | chr2.1:16581107-16581126 | None:intergenic | 20.0% |
| !! | TCAAACAATGTTTCAATTTA+AGG | + | chr2.1:16581108-16581127 | None:intergenic | 20.0% |
| !! | TCACAAAATATATTACAACT+TGG | + | chr2.1:16580611-16580630 | None:intergenic | 20.0% |
| !!! | AAATAACCATTGTTCTTTTT+AGG | - | chr2.1:16579885-16579904 | MS.gene91485:intron | 20.0% |
| !!! | TTAATCAATGTTTTGTTTAG+TGG | - | chr2.1:16580084-16580103 | MS.gene91485:CDS | 20.0% |
| !!! | TTTATGTTGATAATTGTAGA+TGG | - | chr2.1:16580330-16580349 | MS.gene91485:CDS | 20.0% |
| ! | ACAATTTAACAACAGTTAAC+TGG | + | chr2.1:16580788-16580807 | None:intergenic | 25.0% |
| ! | ATTTAGATAACAGATCTGTA+AGG | + | chr2.1:16579549-16579568 | None:intergenic | 25.0% |
| ! | TATTTCGTGTTCTCAATTTA+GGG | - | chr2.1:16580234-16580253 | MS.gene91485:intron | 25.0% |
| ! | TTATTTCGTGTTCTCAATTT+AGG | - | chr2.1:16580233-16580252 | MS.gene91485:intron | 25.0% |
| ! | TTGTAGGTTTACTAAATTTC+TGG | - | chr2.1:16579008-16579027 | MS.gene91485:intron | 25.0% |
| ! | TTTCAACATTGTGTATGTAT+TGG | + | chr2.1:16580180-16580199 | None:intergenic | 25.0% |
| !! | ACATTTGTTAAATGTGCTAT+TGG | - | chr2.1:16580206-16580225 | MS.gene91485:CDS | 25.0% |
| !! | CATTTGTTAAATGTGCTATT+GGG | - | chr2.1:16580207-16580226 | MS.gene91485:CDS | 25.0% |
| !! | GCGTTTAAATTTTTGTTAGA+TGG | - | chr2.1:16581222-16581241 | MS.gene91485:CDS | 25.0% |
| !!! | AGTAGCATTTTTTGATTTCT+TGG | + | chr2.1:16580569-16580588 | None:intergenic | 25.0% |
| !!! | ATAATCGTCTTTTTGTTTGA+AGG | - | chr2.1:16580489-16580508 | MS.gene91485:intron | 25.0% |
| !!! | CTGATTTTTTTTTGTTGGTT+GGG | - | chr2.1:16579834-16579853 | MS.gene91485:intron | 25.0% |
| !!! | TATACGTTGGTTTTTGAATT+AGG | - | chr2.1:16578857-16578876 | MS.gene91485:CDS | 25.0% |
| !!! | TCTGATTTTTTTTTGTTGGT+TGG | - | chr2.1:16579833-16579852 | MS.gene91485:intron | 25.0% |
| !!! | TTGGTCTGATTTTTTTTTGT+TGG | - | chr2.1:16579829-16579848 | MS.gene91485:intron | 25.0% |
| !!! | TTGTCATGCAATTGTTTTTA+AGG | - | chr2.1:16579689-16579708 | MS.gene91485:intron | 25.0% |
| !!! | TTTCTGGTTTGTTATTGTAT+AGG | - | chr2.1:16579024-16579043 | MS.gene91485:intron | 25.0% |
| AATGTTTCAATTTAAGGGTG+GGG | + | chr2.1:16581102-16581121 | None:intergenic | 30.0% | |
| AATTAAGGATGTGCAACAAA+AGG | + | chr2.1:16581201-16581220 | None:intergenic | 30.0% | |
| AATTGCATGACAAATTTCAG+AGG | + | chr2.1:16579682-16579701 | None:intergenic | 30.0% | |
| ACAATATCAAGAGAAATCTG+AGG | + | chr2.1:16579157-16579176 | None:intergenic | 30.0% | |
| ACAATGTTTCAATTTAAGGG+TGG | + | chr2.1:16581104-16581123 | None:intergenic | 30.0% | |
| AGGTTAGATTAAGATTGTGT+TGG | - | chr2.1:16579709-16579728 | MS.gene91485:intron | 30.0% | |
| ATGATGTCAATATACACGTT+AGG | + | chr2.1:16579418-16579437 | None:intergenic | 30.0% | |
| ATTGCATGACAAATTTCAGA+GGG | + | chr2.1:16579681-16579700 | None:intergenic | 30.0% | |
| CAAAAAAAAATCAGACCAAG+AGG | + | chr2.1:16579828-16579847 | None:intergenic | 30.0% | |
| CAATGTTTCAATTTAAGGGT+GGG | + | chr2.1:16581103-16581122 | None:intergenic | 30.0% | |
| CCAAAACACATCAATAGTTA+AGG | + | chr2.1:16579626-16579645 | None:intergenic | 30.0% | |
| GAAAGTTTCAGAACCTAAAA+AGG | - | chr2.1:16579932-16579951 | MS.gene91485:intron | 30.0% | |
| GATGACAAATAGACTAATCT+GGG | + | chr2.1:16579377-16579396 | None:intergenic | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | - | chr2.1:16578940-16578959 | MS.gene91485:intron | 30.0% | |
| TCTTGATATTGTCCTTGAAA+AGG | - | chr2.1:16579165-16579184 | MS.gene91485:intron | 30.0% | |
| TGGTTATTTACCTCAAAGTT+GGG | - | chr2.1:16579089-16579108 | MS.gene91485:intron | 30.0% | |
| ! | CATTGTTTTCTGATATACGT+TGG | - | chr2.1:16578844-16578863 | MS.gene91485:CDS | 30.0% |
| ! | CCTTAACTATTGATGTGTTT+TGG | - | chr2.1:16579623-16579642 | MS.gene91485:intron | 30.0% |
| ! | GATGAATCTGATGATGAAAA+TGG | - | chr2.1:16580041-16580060 | MS.gene91485:intron | 30.0% |
| ! | GGTTTTCCTAAAAAGAACAA+TGG | + | chr2.1:16579894-16579913 | None:intergenic | 30.0% |
| ! | TAGTTCTTGCATTTTGTTGA+TGG | - | chr2.1:16580705-16580724 | MS.gene91485:intron | 30.0% |
| ! | TTTGATTTCTTGGTAGAAAC+TGG | + | chr2.1:16580559-16580578 | None:intergenic | 30.0% |
| !! | AACTTGTTTTCACGTGTATT+AGG | - | chr2.1:16578813-16578832 | MS.gene91485:CDS | 30.0% |
| !! | ACTTGTTTTCACGTGTATTA+GGG | - | chr2.1:16578814-16578833 | MS.gene91485:CDS | 30.0% |
| !! | GGTTGTGATTGATTTTTAGA+TGG | - | chr2.1:16581406-16581425 | MS.gene91485:intron | 30.0% |
| !! | GTTCTATGTTGTGTTTTTGT+AGG | - | chr2.1:16578992-16579011 | MS.gene91485:intron | 30.0% |
| !! | TATAAGTTGTCCATTTTTGC+TGG | - | chr2.1:16580115-16580134 | MS.gene91485:CDS | 30.0% |
| !! | TTGTTGATTCTGTGTTAGAT+CGG | - | chr2.1:16580664-16580683 | MS.gene91485:intron | 30.0% |
| !! | TTTTTGTTGTCTTCATTACC+AGG | - | chr2.1:16581448-16581467 | MS.gene91485:intron | 30.0% |
| !!! | AGTTTTTGAAGCAGATTCAT+TGG | + | chr2.1:16580536-16580555 | None:intergenic | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+GGG | + | chr2.1:16580535-16580554 | None:intergenic | 30.0% |
| AATAAATGTTGACCTCAGAC+AGG | + | chr2.1:16580304-16580323 | None:intergenic | 35.0% | |
| AATGCAAGAACTAGTGCAAA+TGG | + | chr2.1:16580698-16580717 | None:intergenic | 35.0% | |
| ACATGCATAATCAAGACTGA+AGG | + | chr2.1:16580150-16580169 | None:intergenic | 35.0% | |
| ATAACGAAAGGAGAAAGATG+AGG | + | chr2.1:16578624-16578643 | None:intergenic | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | - | chr2.1:16578939-16578958 | MS.gene91485:intron | 35.0% | |
| GAAGAAAGGTAGATAACGAA+AGG | + | chr2.1:16578636-16578655 | None:intergenic | 35.0% | |
| GACATCATTACCAGCAAAAA+TGG | + | chr2.1:16580128-16580147 | None:intergenic | 35.0% | |
| GGATGACAAATAGACTAATC+TGG | + | chr2.1:16579378-16579397 | None:intergenic | 35.0% | |
| GGTTATTTACCTCAAAGTTG+GGG | - | chr2.1:16579090-16579109 | MS.gene91485:intron | 35.0% | |
| GTCAATGCTGAAATTGTAGT+TGG | - | chr2.1:16580829-16580848 | MS.gene91485:intron | 35.0% | |
| GTGGTTATTTACCTCAAAGT+TGG | - | chr2.1:16579088-16579107 | MS.gene91485:intron | 35.0% | |
| GTTATTGTATAGGTTGCACT+TGG | - | chr2.1:16579034-16579053 | MS.gene91485:intron | 35.0% | |
| TAGGCTATTATTGCAACACT+AGG | + | chr2.1:16579399-16579418 | None:intergenic | 35.0% | |
| TCTGCTCTGTGTTAATCAAT+GGG | + | chr2.1:16579792-16579811 | None:intergenic | 35.0% | |
| TTCTGCTCTGTGTTAATCAA+TGG | + | chr2.1:16579793-16579812 | None:intergenic | 35.0% | |
| TTGATTAACACAGAGCAGAA+TGG | - | chr2.1:16579793-16579812 | MS.gene91485:intron | 35.0% | |
| TTGTTAGATGGTAAGAAAGC+TGG | - | chr2.1:16581234-16581253 | MS.gene91485:CDS | 35.0% | |
| ! | AGGAATTTTGTCCCTGTTTA+GGG | + | chr2.1:16579137-16579156 | None:intergenic | 35.0% |
| ! | ATAGCTCAAACTCCTTTTCA+AGG | + | chr2.1:16579180-16579199 | None:intergenic | 35.0% |
| ! | TTTTCACGTGTATTAGGGTT+TGG | - | chr2.1:16578819-16578838 | MS.gene91485:CDS | 35.0% |
| !! | AATGTAGCTTGTTTGCATCA+AGG | - | chr2.1:16580965-16580984 | MS.gene91485:CDS | 35.0% |
| !! | ACTTTGAGGTAAATAACCAC+AGG | + | chr2.1:16579088-16579107 | None:intergenic | 35.0% |
| !! | ATTGTAGTTGGTTTGCATCA+TGG | - | chr2.1:16580841-16580860 | MS.gene91485:intron | 35.0% |
| !! | GTTTAGTTTGTTGCTATCCT+AGG | - | chr2.1:16579521-16579540 | MS.gene91485:intron | 35.0% |
| !! | TGCATTTTGTTGATGGATCA+TGG | - | chr2.1:16580712-16580731 | MS.gene91485:intron | 35.0% |
| !! | TTTTGTTTGAAGGTTGACCA+GGG | - | chr2.1:16580499-16580518 | MS.gene91485:intron | 35.0% |
| !! | TTTTTGTTTGAAGGTTGACC+AGG | - | chr2.1:16580498-16580517 | MS.gene91485:intron | 35.0% |
| AAAACCAGAACCAAAAGCAG+AGG | - | chr2.1:16579908-16579927 | MS.gene91485:intron | 40.0% | |
| AACACAGAGCAGAATGGTAT+GGG | - | chr2.1:16579799-16579818 | MS.gene91485:intron | 40.0% | |
| AGCTGCTATTCACATTTCTC+AGG | - | chr2.1:16578934-16578953 | MS.gene91485:intron | 40.0% | |
| AGTTTCAGAGTTGAATGTCC+TGG | + | chr2.1:16581469-16581488 | None:intergenic | 40.0% | |
| CATCGTTATTCAGCGAAGAA+AGG | + | chr2.1:16578650-16578669 | None:intergenic | 40.0% | |
| GAAATGAACACTAGCAGCTT+TGG | + | chr2.1:16579212-16579231 | None:intergenic | 40.0% | |
| GAGTCTTTCCTCCTTTCTTA+GGG | + | chr2.1:16581278-16581297 | None:intergenic | 40.0% | |
| GTCAGACATGCTGAAATTTG+AGG | - | chr2.1:16581137-16581156 | MS.gene91485:intron | 40.0% | |
| GTCTTGATTATGCATGTCTG+AGG | - | chr2.1:16580153-16580172 | MS.gene91485:CDS | 40.0% | |
| TAAATAACCACAGGCTCGTT+TGG | + | chr2.1:16579079-16579098 | None:intergenic | 40.0% | |
| TAACACAGAGCAGAATGGTA+TGG | - | chr2.1:16579798-16579817 | MS.gene91485:intron | 40.0% | |
| TCTTCATCTTCCTCATCCTT+TGG | + | chr2.1:16580005-16580024 | None:intergenic | 40.0% | |
| ! | AAATGGAAGCTCTGATGATG+AGG | - | chr2.1:16580058-16580077 | MS.gene91485:CDS | 40.0% |
| ! | AGATGATGATGAGAGTGATG+AGG | - | chr2.1:16580369-16580388 | MS.gene91485:intron | 40.0% |
| ! | GAAACTTTCTCCTCTGCTTT+TGG | + | chr2.1:16579921-16579940 | None:intergenic | 40.0% |
| ! | GAGGAATTTTGTCCCTGTTT+AGG | + | chr2.1:16579138-16579157 | None:intergenic | 40.0% |
| ! | TTCTTGGCATCAGCCTTTTT+AGG | + | chr2.1:16579948-16579967 | None:intergenic | 40.0% |
| !! | AGGACATTCAACTCTGAAAC+TGG | - | chr2.1:16581468-16581487 | MS.gene91485:intron | 40.0% |
| !! | GGGGAACAAAAGCTTGTTTT+GGG | - | chr2.1:16579109-16579128 | MS.gene91485:intron | 40.0% |
| !! | GGTTTTTGAATTAGGTGCTG+AGG | - | chr2.1:16578865-16578884 | MS.gene91485:CDS | 40.0% |
| !! | TGAATTAGGTGCTGAGGTTA+AGG | - | chr2.1:16578871-16578890 | MS.gene91485:CDS | 40.0% |
| !! | TGGGGAACAAAAGCTTGTTT+TGG | - | chr2.1:16579108-16579127 | MS.gene91485:intron | 40.0% |
| !!! | TGTTTTGGGAACCCTAAACA+GGG | - | chr2.1:16579123-16579142 | MS.gene91485:intron | 40.0% |
| !!! | TTGTTTTGGGAACCCTAAAC+AGG | - | chr2.1:16579122-16579141 | MS.gene91485:intron | 40.0% |
| AATGCTACTCCTGAGAAGAC+TGG | - | chr2.1:16580580-16580599 | MS.gene91485:intron | 45.0% | |
| ACAACCTTCACGTGTTTAGC+AGG | + | chr2.1:16579978-16579997 | None:intergenic | 45.0% | |
| CAGCTGCTTCATGGTCATAT+GGG | + | chr2.1:16578919-16578938 | None:intergenic | 45.0% | |
| CGTGAAGGTTGTTGATCCAA+AGG | - | chr2.1:16579986-16580005 | MS.gene91485:intron | 45.0% | |
| GAATGGTATGGGTTTCCTCT+TGG | - | chr2.1:16579810-16579829 | MS.gene91485:intron | 45.0% | |
| GACTCCTGTGAAGAAGGTAA+TGG | - | chr2.1:16580405-16580424 | MS.gene91485:intron | 45.0% | |
| GCTGCTAGTGTTCATTTCTG+TGG | - | chr2.1:16579214-16579233 | MS.gene91485:intron | 45.0% | |
| GGAGTCTTTCCTCCTTTCTT+AGG | + | chr2.1:16581279-16581298 | None:intergenic | 45.0% | |
| GGTTGTTGATCCAAAGGATG+AGG | - | chr2.1:16579992-16580011 | MS.gene91485:intron | 45.0% | |
| TGAGAGTGATGAGGATGATG+AGG | - | chr2.1:16580378-16580397 | MS.gene91485:intron | 45.0% | |
| TGGACTGCAACAACATAGCA+AGG | - | chr2.1:16581488-16581507 | MS.gene91485:intron | 45.0% | |
| TGTGAATAGCAGCTGCTTCA+TGG | + | chr2.1:16578928-16578947 | None:intergenic | 45.0% | |
| TTTAGCAGGTGCAGCATTCT+TGG | + | chr2.1:16579964-16579983 | None:intergenic | 45.0% | |
| TTTCCTCCTTTCTTAGGGTG+AGG | + | chr2.1:16581273-16581292 | None:intergenic | 45.0% | |
| ! | AACAGATCTGTAAGGCACCT+AGG | + | chr2.1:16579541-16579560 | None:intergenic | 45.0% |
| ! | GCTTTTGTTCCCCAACTTTG+AGG | + | chr2.1:16579102-16579121 | None:intergenic | 45.0% |
| ! | TGTGCCATTACCTTCTTCAC+AGG | + | chr2.1:16580412-16580431 | None:intergenic | 45.0% |
| !! | GGAGTTTTGGCATCACTGTT+AGG | + | chr2.1:16581300-16581319 | None:intergenic | 45.0% |
| !! | TTAGGTGCTGAGGTTAAGGT+TGG | - | chr2.1:16578875-16578894 | MS.gene91485:intron | 45.0% |
| !!! | TTCTCCTCTGCTTTTGGTTC+TGG | + | chr2.1:16579915-16579934 | None:intergenic | 45.0% |
| !!! | TTTATTTGTTATAATTATTA+TGG | - | chr2.1:16580448-16580467 | MS.gene91485:intron | 5.0% |
| AAAACTCCCAAGTCTGGAGG+AGG | - | chr2.1:16581312-16581331 | MS.gene91485:intron | 50.0% | |
| ACGAGTGAGGAAGGTGAAAC+TGG | - | chr2.1:16579651-16579670 | MS.gene91485:intron | 50.0% | |
| ACTCCTCACCCTAAGAAAGG+AGG | - | chr2.1:16581267-16581286 | MS.gene91485:intron | 50.0% | |
| AGACAAACCAAACGAGCCTG+TGG | - | chr2.1:16579069-16579088 | MS.gene91485:intron | 50.0% | |
| AGGTTGACCAGGGAAAGAAG+AGG | - | chr2.1:16580509-16580528 | MS.gene91485:intron | 50.0% | |
| GACCTCAGACAGGCATAAAG+AGG | + | chr2.1:16580294-16580313 | None:intergenic | 50.0% | |
| GATGCCAAAACTCCCAAGTC+TGG | - | chr2.1:16581306-16581325 | MS.gene91485:intron | 50.0% | |
| GCAACTCCTCACCCTAAGAA+AGG | - | chr2.1:16581264-16581283 | MS.gene91485:intron | 50.0% | |
| GCAGCTGCTTCATGGTCATA+TGG | + | chr2.1:16578920-16578939 | None:intergenic | 50.0% | |
| GGAAGAGACTCCTGTGAAGA+AGG | - | chr2.1:16580399-16580418 | MS.gene91485:intron | 50.0% | |
| GTCCTCTTTATGCCTGTCTG+AGG | - | chr2.1:16580289-16580308 | MS.gene91485:intron | 50.0% | |
| TGCACCTGCTAAACACGTGA+AGG | - | chr2.1:16579971-16579990 | MS.gene91485:intron | 50.0% | |
| TTGGTCTCACCAGTCTTCTC+AGG | + | chr2.1:16580592-16580611 | None:intergenic | 50.0% | |
| ! | TCCTCCAGACTTGGGAGTTT+TGG | + | chr2.1:16581313-16581332 | None:intergenic | 50.0% |
| !!! | TGTTTTGGCTTGCACGAGTG+AGG | - | chr2.1:16579638-16579657 | MS.gene91485:intron | 50.0% |
| AGAGAGTCCTCCTCCAGACT+TGG | + | chr2.1:16581322-16581341 | None:intergenic | 55.0% | |
| CATTGGGCCTCTTCTTTCCC+TGG | + | chr2.1:16580519-16580538 | None:intergenic | 55.0% | |
| GAGAGTCCTCCTCCAGACTT+GGG | + | chr2.1:16581321-16581340 | None:intergenic | 55.0% | |
| GCCAAAACTCCCAAGTCTGG+AGG | - | chr2.1:16581309-16581328 | MS.gene91485:intron | 55.0% | |
| !! | TTGGCTTGCACGAGTGAGGA+AGG | - | chr2.1:16579642-16579661 | MS.gene91485:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 16578604 | 16581530 | 16578604 | ID=MS.gene91485 |
| chr2.1 | mRNA | 16578604 | 16581530 | 16578604 | ID=MS.gene91485.t1;Parent=MS.gene91485 |
| chr2.1 | exon | 16581518 | 16581530 | 16581518 | ID=MS.gene91485.t1.exon1;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16581518 | 16581530 | 16581518 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16581179 | 16581255 | 16581179 | ID=MS.gene91485.t1.exon2;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16581179 | 16581255 | 16581179 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16580902 | 16581088 | 16580902 | ID=MS.gene91485.t1.exon3;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16580902 | 16581088 | 16580902 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16580320 | 16580364 | 16580320 | ID=MS.gene91485.t1.exon4;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16580320 | 16580364 | 16580320 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16580055 | 16580227 | 16580055 | ID=MS.gene91485.t1.exon5;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16580055 | 16580227 | 16580055 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16579714 | 16579785 | 16579714 | ID=MS.gene91485.t1.exon6;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16579714 | 16579785 | 16579714 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16579533 | 16579623 | 16579533 | ID=MS.gene91485.t1.exon7;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16579533 | 16579623 | 16579533 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16578776 | 16578893 | 16578776 | ID=MS.gene91485.t1.exon8;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16578776 | 16578893 | 16578776 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| chr2.1 | exon | 16578604 | 16578664 | 16578604 | ID=MS.gene91485.t1.exon9;Parent=MS.gene91485.t1 |
| chr2.1 | CDS | 16578604 | 16578664 | 16578604 | ID=cds.MS.gene91485.t1;Parent=MS.gene91485.t1 |
| Gene Sequence |
| Protein sequence |
