Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91933.t1 | XP_003613608.1 | 88 | 751 | 56 | 2 | 1 | 751 | 1 | 717 | 3.30E-177 | 632.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91933.t1 | Q8L4D8 | 39.2 | 255 | 137 | 6 | 40 | 280 | 33 | 283 | 6.8e-14 | 80.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91933.t1 | G7KB25 | 88.0 | 751 | 56 | 2 | 1 | 751 | 1 | 717 | 2.4e-177 | 632.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene91933 | 0.825297 | 5.06E-54 | -1.69E-46 |
| MS.gene049808 | MS.gene91933 | 0.820656 | 6.11E-53 | -1.69E-46 |
| MS.gene050194 | MS.gene91933 | 0.81938 | 1.20E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene91933 | 0.83868 | 2.49E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene91933 | 0.809419 | 1.91E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene91933 | 0.825437 | 4.69E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene91933 | 0.845854 | 3.13E-59 | -1.69E-46 |
| MS.gene05157 | MS.gene91933 | 0.814236 | 1.71E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene91933 | 0.834353 | 3.15E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene91933 | 0.814888 | 1.22E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene91933 | 0.836471 | 9.18E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene91933 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene91933 | 0.822063 | 2.89E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene91933 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene91933 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene91933 | 0.8403 | 9.45E-58 | -1.69E-46 |
| MS.gene053581 | MS.gene91933 | 0.844443 | 7.54E-59 | -1.69E-46 |
| MS.gene05364 | MS.gene91933 | 0.819952 | 8.86E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene91933 | 0.825 | 5.95E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene91933 | 0.832651 | 8.37E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene91933 | 0.84623 | 2.48E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene91933 | 0.852775 | 3.70E-61 | -1.69E-46 |
| MS.gene055512 | MS.gene91933 | 0.808637 | 2.81E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene91933 | -0.853301 | 2.62E-61 | -1.69E-46 |
| MS.gene055890 | MS.gene91933 | 0.802946 | 4.41E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene91933 | 0.819602 | 1.07E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene91933 | -0.849984 | 2.28E-60 | -1.69E-46 |
| MS.gene056368 | MS.gene91933 | 0.830006 | 3.74E-55 | -1.69E-46 |
| MS.gene058339 | MS.gene91933 | 0.802898 | 4.51E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene91933 | 0.812889 | 3.38E-51 | -1.69E-46 |
| MS.gene058945 | MS.gene91933 | 0.804849 | 1.77E-49 | -1.69E-46 |
| MS.gene060194 | MS.gene91933 | 0.829563 | 4.80E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene91933 | 0.839057 | 1.99E-57 | -1.69E-46 |
| MS.gene061176 | MS.gene91933 | 0.803269 | 3.78E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene91933 | 0.802864 | 4.58E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene91933 | 0.802908 | 4.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91933.t1 | MTR_5g038620 | 87.915 | 753 | 53 | 4 | 1 | 751 | 1 | 717 | 0.0 | 1207 |
| MS.gene91933.t1 | MTR_4g108140 | 32.314 | 523 | 286 | 19 | 4 | 497 | 2 | 485 | 6.29e-48 | 179 |
| MS.gene91933.t1 | MTR_4g108140 | 50.962 | 104 | 49 | 1 | 648 | 751 | 474 | 575 | 4.57e-19 | 92.0 |
| MS.gene91933.t1 | MTR_4g108140 | 32.314 | 523 | 287 | 18 | 4 | 497 | 2 | 486 | 7.46e-48 | 179 |
| MS.gene91933.t1 | MTR_4g108140 | 50.962 | 104 | 49 | 1 | 648 | 751 | 475 | 576 | 4.51e-19 | 92.0 |
| MS.gene91933.t1 | MTR_1g023760 | 33.333 | 189 | 124 | 2 | 66 | 253 | 72 | 259 | 4.03e-18 | 89.7 |
| MS.gene91933.t1 | MTR_0019s0070 | 32.000 | 150 | 79 | 3 | 120 | 260 | 118 | 253 | 3.09e-14 | 76.3 |
| MS.gene91933.t1 | MTR_1g101330 | 30.667 | 150 | 78 | 4 | 116 | 253 | 110 | 245 | 6.09e-13 | 72.0 |
| MS.gene91933.t1 | MTR_8g102400 | 32.743 | 113 | 55 | 2 | 71 | 183 | 85 | 176 | 1.23e-11 | 67.8 |
| MS.gene91933.t1 | MTR_8g024540 | 45.833 | 72 | 30 | 1 | 113 | 175 | 112 | 183 | 1.24e-11 | 68.2 |
| MS.gene91933.t1 | MTR_1g103070 | 46.032 | 63 | 34 | 0 | 121 | 183 | 138 | 200 | 6.61e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91933.t1 | AT1G14380 | 32.168 | 429 | 223 | 11 | 4 | 405 | 2 | 389 | 1.28e-43 | 167 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 489 | 594 | 1.55e-17 | 87.4 |
| MS.gene91933.t1 | AT1G14380 | 32.168 | 429 | 223 | 11 | 4 | 405 | 2 | 389 | 1.28e-43 | 167 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 489 | 594 | 1.55e-17 | 87.4 |
| MS.gene91933.t1 | AT1G14380 | 32.168 | 429 | 223 | 11 | 4 | 405 | 2 | 389 | 1.28e-43 | 167 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 489 | 594 | 1.55e-17 | 87.4 |
| MS.gene91933.t1 | AT1G14380 | 34.188 | 351 | 183 | 9 | 4 | 344 | 2 | 314 | 1.70e-43 | 167 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 551 | 656 | 1.33e-17 | 87.8 |
| MS.gene91933.t1 | AT1G14380 | 34.188 | 351 | 183 | 9 | 4 | 344 | 2 | 314 | 1.70e-43 | 167 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 551 | 656 | 1.33e-17 | 87.8 |
| MS.gene91933.t1 | AT1G14380 | 34.188 | 351 | 183 | 9 | 4 | 344 | 2 | 314 | 1.70e-43 | 167 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 551 | 656 | 1.33e-17 | 87.8 |
| MS.gene91933.t1 | AT1G14380 | 34.188 | 351 | 183 | 9 | 4 | 344 | 2 | 314 | 2.63e-43 | 166 |
| MS.gene91933.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 461 | 566 | 1.84e-17 | 87.0 |
| MS.gene91933.t1 | AT1G18840 | 34.254 | 362 | 181 | 10 | 1 | 329 | 1 | 338 | 2.74e-41 | 160 |
| MS.gene91933.t1 | AT1G18840 | 34.254 | 362 | 181 | 10 | 1 | 329 | 1 | 338 | 2.74e-41 | 160 |
| MS.gene91933.t1 | AT1G18840 | 34.254 | 362 | 181 | 10 | 1 | 329 | 1 | 338 | 2.74e-41 | 160 |
| MS.gene91933.t1 | AT1G74690 | 34.473 | 351 | 200 | 10 | 1 | 336 | 1 | 336 | 8.05e-38 | 150 |
| MS.gene91933.t1 | AT1G74690 | 46.067 | 89 | 47 | 1 | 664 | 751 | 491 | 579 | 1.52e-11 | 68.2 |
| MS.gene91933.t1 | AT2G02790 | 33.780 | 373 | 190 | 11 | 1 | 356 | 1 | 333 | 7.16e-36 | 144 |
| MS.gene91933.t1 | AT2G02790 | 51.485 | 101 | 48 | 1 | 648 | 747 | 485 | 585 | 4.28e-21 | 98.6 |
| MS.gene91933.t1 | AT2G02790 | 33.780 | 373 | 190 | 11 | 1 | 356 | 1 | 333 | 7.16e-36 | 144 |
| MS.gene91933.t1 | AT2G02790 | 51.485 | 101 | 48 | 1 | 648 | 747 | 485 | 585 | 4.28e-21 | 98.6 |
| MS.gene91933.t1 | AT2G02790 | 33.780 | 373 | 190 | 11 | 1 | 356 | 1 | 333 | 2.24e-35 | 143 |
| MS.gene91933.t1 | AT2G02790 | 50.467 | 107 | 52 | 1 | 648 | 753 | 485 | 591 | 1.20e-21 | 100 |
| MS.gene91933.t1 | AT1G19870 | 36.957 | 138 | 76 | 3 | 117 | 253 | 29 | 156 | 1.23e-18 | 90.9 |
| MS.gene91933.t1 | AT1G19870 | 36.957 | 138 | 76 | 3 | 117 | 253 | 212 | 339 | 2.02e-18 | 90.5 |
| MS.gene91933.t1 | AT4G14750 | 32.632 | 190 | 100 | 7 | 1 | 183 | 1 | 169 | 4.66e-15 | 78.2 |
| MS.gene91933.t1 | AT4G14750 | 32.632 | 190 | 100 | 7 | 1 | 183 | 60 | 228 | 1.52e-14 | 77.0 |
| MS.gene91933.t1 | AT4G14750 | 32.632 | 190 | 100 | 7 | 1 | 183 | 60 | 228 | 1.77e-14 | 77.0 |
| MS.gene91933.t1 | AT5G07240 | 49.153 | 59 | 30 | 0 | 121 | 179 | 108 | 166 | 2.15e-11 | 67.0 |
| MS.gene91933.t1 | AT5G07240 | 49.153 | 59 | 30 | 0 | 121 | 179 | 154 | 212 | 2.81e-11 | 67.0 |
| MS.gene91933.t1 | AT3G51380 | 46.970 | 66 | 35 | 0 | 114 | 179 | 32 | 97 | 2.95e-11 | 61.2 |
Find 159 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTTCTTCTTCAATTT+TGG | 0.131596 | 5.3:-26828735 | None:intergenic |
| GTAACAATGCCGATAGATTT+TGG | 0.176558 | 5.3:-26827876 | None:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | 5.3:-26829423 | None:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | 5.3:-26829651 | None:intergenic |
| CTTTCACGGCAGGTGATTTC+CGG | 0.192974 | 5.3:-26828797 | None:intergenic |
| TCTGAGACCTTTCTCTTCTT+TGG | 0.196588 | 5.3:-26829729 | None:intergenic |
| CTGCCATTCAAGCTCTTCTT+TGG | 0.209892 | 5.3:-26829704 | None:intergenic |
| TCCAAGACTGTTCTCTTCTT+TGG | 0.245150 | 5.3:-26829270 | None:intergenic |
| CCACCATTTGAGCTCTTCTT+TGG | 0.254127 | 5.3:-26829167 | None:intergenic |
| GGCTTATCGTTGTTCTCTTC+TGG | 0.254394 | 5.3:-26829302 | None:intergenic |
| GTTGGACAAGGTCAAGCTTT+TGG | 0.259433 | 5.3:+26828703 | MS.gene91933:CDS |
| AAAGAATCCACAGTTGAAAT+TGG | 0.265796 | 5.3:-26826634 | None:intergenic |
| CCACCATTTAAGCTCTTCTT+TGG | 0.271041 | 5.3:-26829551 | None:intergenic |
| CTGCCATTTAAGCTCTTCTT+TGG | 0.277905 | 5.3:-26829245 | None:intergenic |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.283139 | 5.3:-26829476 | None:intergenic |
| CAAATATCTGCACCAATATC+TGG | 0.285257 | 5.3:+26826658 | MS.gene91933:CDS |
| CCGCCACTTACGCTCTTCTT+TGG | 0.286225 | 5.3:-26829398 | None:intergenic |
| AATGTTAGACGTTCTGATAT+TGG | 0.287099 | 5.3:+26827581 | MS.gene91933:CDS |
| GTCTTCTTGCAGAGGCTATC+AGG | 0.305109 | 5.3:+26826855 | MS.gene91933:CDS |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.309644 | 5.3:-26829323 | None:intergenic |
| CCGCCACTTAAGCTCTTCTT+TGG | 0.309857 | 5.3:-26829626 | None:intergenic |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.311900 | 5.3:+26829548 | MS.gene91933:CDS |
| ATGTTAGACGTTCTGATATT+GGG | 0.320597 | 5.3:+26827582 | MS.gene91933:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | 5.3:+26829242 | MS.gene91933:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | 5.3:+26829320 | MS.gene91933:CDS |
| GCAACATTAGCTCCAGATAT+TGG | 0.324752 | 5.3:-26826670 | None:intergenic |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.327940 | 5.3:+26829473 | MS.gene91933:CDS |
| CTGAAAAGGCACAAGTTAAA+AGG | 0.331400 | 5.3:+26828769 | MS.gene91933:CDS |
| CAGGCAGTGAAGCTCTTCTT+TGG | 0.344810 | 5.3:-26829886 | None:intergenic |
| GCTGATGAGGGCTCAAGTTC+TGG | 0.345997 | 5.3:+26828819 | MS.gene91933:CDS |
| GCCATATAACTCGGCACTCT+TGG | 0.374824 | 5.3:-26829953 | None:intergenic |
| TCCAAGAGTGCCGAGTTATA+TGG | 0.386156 | 5.3:+26829952 | MS.gene91933:CDS |
| AAGGTAGGAGATGAAGAAAT+AGG | 0.392384 | 5.3:+26829815 | MS.gene91933:CDS |
| TGACTCGGTGTCGGCTGAAA+AGG | 0.392618 | 5.3:+26828755 | MS.gene91933:CDS |
| AAAGGATTCAAATCACTCAT+TGG | 0.395796 | 5.3:+26828869 | MS.gene91933:CDS |
| GTCAAAGAAGAGAAAGATCT+TGG | 0.396828 | 5.3:+26829575 | MS.gene91933:CDS |
| ATGATATCAGTAGCAAATCT+TGG | 0.399401 | 5.3:-26830019 | None:intergenic |
| TGATCTTGGAGAACCTTACT+TGG | 0.410168 | 5.3:+26828662 | MS.gene91933:CDS |
| AACTTCATTGAAGGCTCGTC+GGG | 0.417085 | 5.3:+26827427 | MS.gene91933:intron |
| TGAGCCCTCATCAGCTTTCA+CGG | 0.420821 | 5.3:-26828811 | None:intergenic |
| TCTTCACTTAACAGCAAGTC+AGG | 0.421600 | 5.3:+26830079 | MS.gene91933:CDS |
| TGATATCAGTAGCAAATCTT+GGG | 0.424517 | 5.3:-26830018 | None:intergenic |
| GTCAAAGAAGAGAAAGGTCT+TGG | 0.427941 | 5.3:+26829191 | MS.gene91933:CDS |
| ATAAATCTCTGTCATCTTCA+AGG | 0.431656 | 5.3:+26830164 | MS.gene91933:CDS |
| CTATCGCTAAATAGTGATCT+TGG | 0.432037 | 5.3:+26828648 | MS.gene91933:CDS |
| TTCTGTCCAAGACCTTTCTC+AGG | 0.432297 | 5.3:-26829119 | None:intergenic |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | 5.3:+26829422 | MS.gene91933:CDS |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | 5.3:+26829650 | MS.gene91933:CDS |
| TCTTGCCCTGAGAAAGGTCT+TGG | 0.436010 | 5.3:+26829113 | MS.gene91933:CDS |
| GATGTTTCAGAGCAGGGGCC+AGG | 0.436095 | 5.3:+26829041 | MS.gene91933:CDS |
| AAGGAAGAAGTCCTGGGAAA+TGG | 0.438773 | 5.3:+26826305 | MS.gene91933:CDS |
| GAAAGCAGTGCTTTCAGAAA+AGG | 0.446897 | 5.3:+26826693 | MS.gene91933:CDS |
| GGGCAAGACTCTTCCGACTT+TGG | 0.449990 | 5.3:-26829098 | None:intergenic |
| AGCCACTTTGAAGCCAAGTA+AGG | 0.453326 | 5.3:-26828675 | None:intergenic |
| TCACTCATTGGTTTCAGCTC+AGG | 0.453397 | 5.3:+26828881 | MS.gene91933:CDS |
| AGAAAAGAAAACACAGCTCT+AGG | 0.454796 | 5.3:+26828994 | MS.gene91933:CDS |
| CTGATAAATTTGAGCGGAAG+AGG | 0.454871 | 5.3:+26830127 | MS.gene91933:CDS |
| TTCAAAGAAGAGAAAGATGT+TGG | 0.458543 | 5.3:+26829500 | MS.gene91933:CDS |
| TCTCTCAAATGGAGATGAAA+AGG | 0.465118 | 5.3:+26826750 | MS.gene91933:CDS |
| AAGCCAAAGAAGAGCTCAAA+TGG | 0.466804 | 5.3:+26829164 | MS.gene91933:CDS |
| CAGACAGAAAGCACTAGAAC+AGG | 0.470431 | 5.3:+26829748 | MS.gene91933:CDS |
| GAGAGGGATATTCTCTCAAA+TGG | 0.470522 | 5.3:+26826739 | MS.gene91933:CDS |
| TTTCACGGCAGGTGATTTCC+GGG | 0.473542 | 5.3:-26828796 | None:intergenic |
| TTCGAGTAACAAGGATGCAC+TGG | 0.473941 | 5.3:+26826585 | MS.gene91933:CDS |
| CTCTGTCATCTTCAAGGGAC+GGG | 0.476009 | 5.3:+26830170 | MS.gene91933:CDS |
| ATGGGGAAAGGAAGAAGTCC+TGG | 0.479376 | 5.3:+26826298 | MS.gene91933:CDS |
| AGCTCTTATTCGTGGTCACT+TGG | 0.479958 | 5.3:+26827484 | MS.gene91933:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | 5.3:+26829449 | MS.gene91933:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | 5.3:+26829677 | MS.gene91933:CDS |
| CCCTCATCAGCTTTCACGGC+AGG | 0.480653 | 5.3:-26828807 | None:intergenic |
| AAGCCAAAGAAGAGCTTGAA+TGG | 0.481386 | 5.3:+26829701 | MS.gene91933:CDS |
| TCTTGATCATTAAAATTAGC+AGG | 0.485135 | 5.3:-26829905 | None:intergenic |
| AGATCACTATTTAGCGATAG+AGG | 0.485199 | 5.3:-26828645 | None:intergenic |
| CTTCAAAGTGGCTTGACCGT+TGG | 0.486768 | 5.3:+26828685 | MS.gene91933:CDS |
| GAAGTCCTGGGAAATGGATC+AGG | 0.490967 | 5.3:+26826311 | MS.gene91933:CDS |
| TGTTACTGATGTTTCAGAGC+AGG | 0.494693 | 5.3:+26829034 | MS.gene91933:CDS |
| AATCAGCAAAAGCTAGGCTA+AGG | 0.506190 | 5.3:+26829984 | MS.gene91933:CDS |
| TGGATCAGGAGCTTACTCTC+AGG | 0.507002 | 5.3:+26826325 | MS.gene91933:CDS |
| ACGTTCTGATATTGGGCTTG+AGG | 0.509685 | 5.3:+26827589 | MS.gene91933:CDS |
| ACCAAAGAAGAGAACAGTCT+TGG | 0.521726 | 5.3:+26829269 | MS.gene91933:CDS |
| GAAGAGTCTTGCCCTGAGAA+AGG | 0.521918 | 5.3:+26829107 | MS.gene91933:CDS |
| AAGCCAAAGAAGAGCTTAAG+TGG | 0.524060 | 5.3:+26829623 | MS.gene91933:CDS |
| TCTTGAGACACTCAGGCTTA+CGG | 0.526578 | 5.3:+26826813 | MS.gene91933:CDS |
| CTTACAGACTAGTGTGAAGA+AGG | 0.530864 | 5.3:+26829796 | MS.gene91933:CDS |
| GTTACTGATGTTTCAGAGCA+GGG | 0.534754 | 5.3:+26829035 | MS.gene91933:CDS |
| CAGCTGCAAGCTCTTATTCG+TGG | 0.539642 | 5.3:+26827476 | MS.gene91933:CDS |
| AGATGAAAAGGCTCAGGCAC+CGG | 0.542766 | 5.3:+26826762 | MS.gene91933:CDS |
| AAATGGAGATGAAAAGGCTC+AGG | 0.543410 | 5.3:+26826756 | MS.gene91933:CDS |
| CAGACTAGTGTGAAGAAGGT+AGG | 0.543608 | 5.3:+26829800 | MS.gene91933:CDS |
| TAACTCGGCACTCTTGGACT+TGG | 0.545077 | 5.3:-26829947 | None:intergenic |
| ATTGTTGACGTGATGGGGAA+AGG | 0.545375 | 5.3:+26826286 | None:intergenic |
| TTCTGCTTTATATTGTGTGA+AGG | 0.546023 | 5.3:+26827523 | MS.gene91933:CDS |
| ACTCAATGTCCAAAATCTAT+CGG | 0.549474 | 5.3:+26827867 | MS.gene91933:CDS |
| GAAAAGAAAACACAGCTCTA+GGG | 0.549824 | 5.3:+26828995 | MS.gene91933:CDS |
| GAGCTTAAATGGCGGTGTCA+AGG | 0.550330 | 5.3:+26829331 | MS.gene91933:CDS |
| AGAAAATGCCTTTGTTCACC+AGG | 0.551079 | 5.3:+26827923 | MS.gene91933:CDS |
| CGACTGAATCAGCAAAAGCT+AGG | 0.556769 | 5.3:+26829978 | MS.gene91933:CDS |
| AATTGTTAAAGTGCAAGCAT+TGG | 0.557493 | 5.3:+26827547 | MS.gene91933:CDS |
| TCATCTTCAAGGGACGGGAC+TGG | 0.557763 | 5.3:+26830175 | MS.gene91933:CDS |
| AAGCCAAAGAAGAGCGTAAG+TGG | 0.558887 | 5.3:+26829395 | MS.gene91933:CDS |
| TAATAAGTCATCACATGAGA+GGG | 0.560618 | 5.3:+26826723 | MS.gene91933:CDS |
| GTCTAATCCAATTTCAACTG+TGG | 0.561495 | 5.3:+26826627 | MS.gene91933:CDS |
| TCTGCTTTATATTGTGTGAA+GGG | 0.562073 | 5.3:+26827524 | MS.gene91933:CDS |
| AAACTTCAGTCTTCTTGCAG+AGG | 0.563457 | 5.3:+26826847 | MS.gene91933:CDS |
| ACCTGCCGTGAAAGCTGATG+AGG | 0.565649 | 5.3:+26828806 | MS.gene91933:CDS |
| GGTGGTGTCAAAGAAGAGAA+AGG | 0.565727 | 5.3:+26829185 | MS.gene91933:CDS |
| GGAGTTAGCGAAGACTTGAA+TGG | 0.567098 | 5.3:+26829836 | MS.gene91933:CDS |
| ATCAGCAAAAGCTAGGCTAA+GGG | 0.567639 | 5.3:+26829985 | MS.gene91933:CDS |
| AGAAACGACGGTACCAAAGT+CGG | 0.568766 | 5.3:+26829085 | MS.gene91933:CDS |
| AAAGCTAGGCTAAGGGGACA+AGG | 0.569700 | 5.3:+26829992 | MS.gene91933:CDS |
| TAACTTCATTGAAGGCTCGT+CGG | 0.576552 | 5.3:+26827426 | MS.gene91933:intron |
| TAAATCTCTGTCATCTTCAA+GGG | 0.577185 | 5.3:+26830165 | MS.gene91933:CDS |
| GGCAGTGCCAAAGAAGAGAA+AGG | 0.578082 | 5.3:+26829722 | MS.gene91933:CDS |
| AAGATGATCTTGAGACACTC+AGG | 0.580261 | 5.3:+26826806 | MS.gene91933:CDS |
| CTAGTCTGTAAGACAGCAGT+AGG | 0.581177 | 5.3:-26829785 | None:intergenic |
| GGATCAGGAGCTTACTCTCA+GGG | 0.586360 | 5.3:+26826326 | MS.gene91933:CDS |
| GAAGAAACTTGACTCGGTGT+CGG | 0.588481 | 5.3:+26828746 | MS.gene91933:CDS |
| TCTGTCCAAGACCTTTCTCA+GGG | 0.589944 | 5.3:-26829118 | None:intergenic |
| AAGCTCCTGATCCATTTCCC+AGG | 0.592908 | 5.3:-26826316 | None:intergenic |
| CCTGCCGTGAAAGCTGATGA+GGG | 0.596782 | 5.3:+26828807 | MS.gene91933:CDS |
| CACAAGTTAAAAGGACTACC+CGG | 0.602610 | 5.3:+26828778 | MS.gene91933:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | 5.3:+26829416 | MS.gene91933:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | 5.3:+26829644 | MS.gene91933:CDS |
| AGATGAAAGTGAATGCCTCC+TGG | 0.603995 | 5.3:-26830059 | None:intergenic |
| TTAATAAGTCATCACATGAG+AGG | 0.605684 | 5.3:+26826722 | MS.gene91933:CDS |
| TCTCTGTCATCTTCAAGGGA+CGG | 0.611971 | 5.3:+26830169 | MS.gene91933:CDS |
| AACCTTACTTGGCTTCAAAG+TGG | 0.613672 | 5.3:+26828673 | MS.gene91933:CDS |
| AAAAGCTTGACCTTGTCCAA+CGG | 0.615531 | 5.3:-26828701 | None:intergenic |
| AGTGGCTTGACCGTTGGACA+AGG | 0.615551 | 5.3:+26828691 | MS.gene91933:CDS |
| GATGCAACATTAGCAACGGC+CGG | 0.617861 | 5.3:-26826781 | None:intergenic |
| TCGAGTAACAAGGATGCACT+GGG | 0.618488 | 5.3:+26826586 | MS.gene91933:CDS |
| TTACTGATGTTTCAGAGCAG+GGG | 0.623308 | 5.3:+26829036 | MS.gene91933:CDS |
| TGAGGTCCTGAAAGTTCGCA+AGG | 0.629107 | 5.3:+26827607 | MS.gene91933:CDS |
| TTAGCGATAGAGGAAACGCA+TGG | 0.630241 | 5.3:-26828635 | None:intergenic |
| ATCAGGAGCTTACTCTCAGG+GGG | 0.630920 | 5.3:+26826328 | MS.gene91933:CDS |
| CGGCATTGTTACATCTACAC+TGG | 0.631867 | 5.3:+26827887 | MS.gene91933:CDS |
| TGAGCGGAAGAGGAGTTGCA+AGG | 0.632349 | 5.3:+26830137 | MS.gene91933:CDS |
| GTAGAAATCTTCGAGTAACA+AGG | 0.636686 | 5.3:+26826576 | MS.gene91933:intron |
| AAAGTGCAAGCATTGGCTCG+TGG | 0.637631 | 5.3:+26827554 | MS.gene91933:CDS |
| TTGAGATGCAACATTAGCAA+CGG | 0.640449 | 5.3:-26826785 | None:intergenic |
| TCAGCAAAAGCTAGGCTAAG+GGG | 0.647323 | 5.3:+26829986 | MS.gene91933:CDS |
| AGTTCCTACCTGGTGAACAA+AGG | 0.648285 | 5.3:-26827931 | None:intergenic |
| TGGGGAAAGGAAGAAGTCCT+GGG | 0.653494 | 5.3:+26826299 | MS.gene91933:CDS |
| TCAGTCGGAGCCATATAACT+CGG | 0.661998 | 5.3:-26829962 | None:intergenic |
| CCAAAGAAGAGCTCAAATGG+TGG | 0.663791 | 5.3:+26829167 | MS.gene91933:CDS |
| GATATCAGTAGCAAATCTTG+GGG | 0.666334 | 5.3:-26830017 | None:intergenic |
| GAAAAGCTGATAAATTTGAG+CGG | 0.671178 | 5.3:+26830121 | MS.gene91933:CDS |
| CAGAAAGCACTAGAACAGGA+AGG | 0.674738 | 5.3:+26829752 | MS.gene91933:CDS |
| TAGCGATAGAGGAAACGCAT+GGG | 0.677774 | 5.3:-26828634 | None:intergenic |
| CCAAAGAAGAGCTTAAATGG+TGG | 0.687938 | 5.3:+26829551 | MS.gene91933:CDS |
| TGAGAAAATGAAAGAAACGA+CGG | 0.688170 | 5.3:+26829073 | MS.gene91933:CDS |
| ATTGAAGAAGAAACTTGACT+CGG | 0.691260 | 5.3:+26828740 | MS.gene91933:CDS |
| CCAAAGAAGAGCGTAAGTGG+CGG | 0.702919 | 5.3:+26829398 | MS.gene91933:CDS |
| GATCAGGAGCTTACTCTCAG+GGG | 0.703576 | 5.3:+26826327 | MS.gene91933:CDS |
| CCAAAGAAGAGCTTAAGTGG+CGG | 0.710668 | 5.3:+26829626 | MS.gene91933:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.712376 | 5.3:+26829476 | MS.gene91933:CDS |
| GTTAGCGAAGACTTGAATGG+CGG | 0.720405 | 5.3:+26829839 | MS.gene91933:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.731508 | 5.3:+26829323 | MS.gene91933:CDS |
| TCAGGAGCTTACTCTCAGGG+GGG | 0.780339 | 5.3:+26826329 | MS.gene91933:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTATCATCTATAT+CGG | - | chr5.3:26827976-26827995 | None:intergenic | 10.0% |
| !!! | AAATAATAATAGATTGTTTT+AGG | + | chr5.3:26827987-26828006 | MS.gene91933:intron | 10.0% |
| !! | AGTATTAATTGAATTAAAGA+AGG | + | chr5.3:26828137-26828156 | MS.gene91933:intron | 15.0% |
| !!! | AATTTTATATTCGATATGAA+TGG | + | chr5.3:26828453-26828472 | MS.gene91933:intron | 15.0% |
| !! | AAATAAAAGTGAAATAGATG+TGG | - | chr5.3:26827167-26827186 | None:intergenic | 20.0% |
| !! | AACAGAAATGTAAAATTACA+GGG | - | chr5.3:26826889-26826908 | None:intergenic | 20.0% |
| !! | GTTTCTTTATGTATGATTAA+TGG | + | chr5.3:26827375-26827394 | MS.gene91933:intron | 20.0% |
| !! | TAACAGAAATGTAAAATTAC+AGG | - | chr5.3:26826890-26826909 | None:intergenic | 20.0% |
| !! | TATATAACAAAGACAAATTC+AGG | - | chr5.3:26828200-26828219 | None:intergenic | 20.0% |
| !! | TCTTCATATAATTTCAGTTA+AGG | + | chr5.3:26828327-26828346 | MS.gene91933:intron | 20.0% |
| !! | TGTTATAAGGAAACTATTAA+AGG | + | chr5.3:26826464-26826483 | MS.gene91933:intron | 20.0% |
| !! | TTAGTCATATTTCAGATATT+AGG | - | chr5.3:26828017-26828036 | None:intergenic | 20.0% |
| !!! | AATTTTACATTTCTGTTATG+CGG | + | chr5.3:26826892-26826911 | MS.gene91933:intron | 20.0% |
| !!! | ACATATTTTGTCAAAAATTG+CGG | + | chr5.3:26827283-26827302 | MS.gene91933:intron | 20.0% |
| !!! | ATAATTTTATTGTTCATGGA+AGG | + | chr5.3:26828077-26828096 | MS.gene91933:intron | 20.0% |
| !!! | ATGTTGTAATTGTTACTTAT+AGG | + | chr5.3:26826494-26826513 | MS.gene91933:intron | 20.0% |
| !!! | ATTTTTTTTTTCTTTCCCTA+TGG | + | chr5.3:26828503-26828522 | MS.gene91933:intron | 20.0% |
| !!! | GTTGATAATTTTATTGTTCA+TGG | + | chr5.3:26828073-26828092 | MS.gene91933:intron | 20.0% |
| !!! | GTTTTGAAATTAAATTGTCT+TGG | + | chr5.3:26828547-26828566 | MS.gene91933:intron | 20.0% |
| !!! | TTTTCTCAATTTCTTTCTTT+GGG | - | chr5.3:26828917-26828936 | None:intergenic | 20.0% |
| !!! | TTTTGTTTCTGCAATTTTAT+TGG | + | chr5.3:26827242-26827261 | MS.gene91933:intron | 20.0% |
| ! | ACAGAAATGTAAAATTACAG+GGG | - | chr5.3:26826888-26826907 | None:intergenic | 25.0% |
| ! | ATGGTATCATTTACAAAGTT+TGG | + | chr5.3:26828472-26828491 | MS.gene91933:intron | 25.0% |
| ! | CAACTTAAAATCATAACATG+AGG | - | chr5.3:26828402-26828421 | None:intergenic | 25.0% |
| ! | TAATAGTTTCCTTATAACAG+AGG | - | chr5.3:26826463-26826482 | None:intergenic | 25.0% |
| ! | TCTTGATCATTAAAATTAGC+AGG | - | chr5.3:26829908-26829927 | None:intergenic | 25.0% |
| ! | TTAATACTACTAGTGTTTAC+CGG | - | chr5.3:26828125-26828144 | None:intergenic | 25.0% |
| !! | ATCAACTGATAACATTTTCA+TGG | - | chr5.3:26828059-26828078 | None:intergenic | 25.0% |
| !! | ATTTTACATTTCTGTTATGC+GGG | + | chr5.3:26826893-26826912 | MS.gene91933:intron | 25.0% |
| !! | CTTTTCTCAATTTCTTTCTT+TGG | - | chr5.3:26828918-26828937 | None:intergenic | 25.0% |
| !! | TCAAGTTTCTTCTTCAATTT+TGG | - | chr5.3:26828738-26828757 | None:intergenic | 25.0% |
| !! | TGTTAAGTGAAAAGTTGTTT+TGG | + | chr5.3:26828360-26828379 | MS.gene91933:intron | 25.0% |
| !!! | AGTACTTTGAATTCTGAAAT+AGG | + | chr5.3:26826522-26826541 | MS.gene91933:intron | 25.0% |
| !!! | TCTTAGTATTGGTACTTTAT+TGG | + | chr5.3:26827349-26827368 | MS.gene91933:intron | 25.0% |
| AAACTAAACCAAACAACCAT+AGG | - | chr5.3:26828522-26828541 | None:intergenic | 30.0% | |
| AAAGAATCCACAGTTGAAAT+TGG | - | chr5.3:26826637-26826656 | None:intergenic | 30.0% | |
| AAAGGATTCAAATCACTCAT+TGG | + | chr5.3:26828869-26828888 | MS.gene91933:CDS | 30.0% | |
| AAATTTGCAGTTGTAGGAAA+AGG | + | chr5.3:26827193-26827212 | MS.gene91933:intron | 30.0% | |
| AACTAAACCAAACAACCATA+GGG | - | chr5.3:26828521-26828540 | None:intergenic | 30.0% | |
| AAGATTTCTACATACACGAA+TGG | - | chr5.3:26826567-26826586 | None:intergenic | 30.0% | |
| AATCATAACATGAGGTTGAA+TGG | - | chr5.3:26828394-26828413 | None:intergenic | 30.0% | |
| AATGTTAGACGTTCTGATAT+TGG | + | chr5.3:26827581-26827600 | MS.gene91933:CDS | 30.0% | |
| AATTGTTAAAGTGCAAGCAT+TGG | + | chr5.3:26827547-26827566 | MS.gene91933:CDS | 30.0% | |
| AATTTCTCAGTGGAAATGTT+AGG | + | chr5.3:26827685-26827704 | MS.gene91933:intron | 30.0% | |
| ACAAAAACAACGTCCAAAAA+AGG | + | chr5.3:26828851-26828870 | MS.gene91933:CDS | 30.0% | |
| ACTCAATGTCCAAAATCTAT+CGG | + | chr5.3:26827867-26827886 | MS.gene91933:CDS | 30.0% | |
| ATAAATCTCTGTCATCTTCA+AGG | + | chr5.3:26830164-26830183 | MS.gene91933:CDS | 30.0% | |
| ATGATATCAGTAGCAAATCT+TGG | - | chr5.3:26830022-26830041 | None:intergenic | 30.0% | |
| ATGTTAGACGTTCTGATATT+GGG | + | chr5.3:26827582-26827601 | MS.gene91933:CDS | 30.0% | |
| ATTAATTAGAAGTTCCTACC+TGG | - | chr5.3:26827944-26827963 | None:intergenic | 30.0% | |
| ATTGAAGAAGAAACTTGACT+CGG | + | chr5.3:26828740-26828759 | MS.gene91933:CDS | 30.0% | |
| CAATGTACAAATCATTGCAT+TGG | - | chr5.3:26827656-26827675 | None:intergenic | 30.0% | |
| CATGCAATTTGTCTTAGTAT+TGG | + | chr5.3:26827338-26827357 | MS.gene91933:intron | 30.0% | |
| GAAAAGCTGATAAATTTGAG+CGG | + | chr5.3:26830121-26830140 | MS.gene91933:CDS | 30.0% | |
| TAAACGAAATTTGCAGTTGT+AGG | + | chr5.3:26827187-26827206 | MS.gene91933:intron | 30.0% | |
| TAAATCTCTGTCATCTTCAA+GGG | + | chr5.3:26830165-26830184 | MS.gene91933:CDS | 30.0% | |
| TAATAAGTCATCACATGAGA+GGG | + | chr5.3:26826723-26826742 | MS.gene91933:CDS | 30.0% | |
| TAATACTACTAGTGTTTACC+GGG | - | chr5.3:26828124-26828143 | None:intergenic | 30.0% | |
| TAGACAAAAACAGTTTAACC+AGG | + | chr5.3:26830041-26830060 | MS.gene91933:CDS | 30.0% | |
| TAGTTAGTGAAGCAATACAA+GGG | - | chr5.3:26827824-26827843 | None:intergenic | 30.0% | |
| TCTGCTTTATATTGTGTGAA+GGG | + | chr5.3:26827524-26827543 | MS.gene91933:CDS | 30.0% | |
| TGAGAAAATGAAAGAAACGA+CGG | + | chr5.3:26829073-26829092 | MS.gene91933:CDS | 30.0% | |
| TGATATCAGTAGCAAATCTT+GGG | - | chr5.3:26830021-26830040 | None:intergenic | 30.0% | |
| TTAATAAGTCATCACATGAG+AGG | + | chr5.3:26826722-26826741 | MS.gene91933:CDS | 30.0% | |
| TTCAAAGAAGAGAAAGATGT+TGG | + | chr5.3:26829500-26829519 | MS.gene91933:CDS | 30.0% | |
| TTCTGCTTTATATTGTGTGA+AGG | + | chr5.3:26827523-26827542 | MS.gene91933:CDS | 30.0% | |
| TTCTTGCATAACTTCATTGA+AGG | + | chr5.3:26827418-26827437 | MS.gene91933:intron | 30.0% | |
| TTTACCGGGAGAAAAAAAAA+GGG | - | chr5.3:26828110-26828129 | None:intergenic | 30.0% | |
| ! | CATTTTTGTAAGTGTTTTCG+TGG | + | chr5.3:26826393-26826412 | MS.gene91933:intron | 30.0% |
| ! | GTACATTCTTTTTGTATGAC+AGG | - | chr5.3:26827741-26827760 | None:intergenic | 30.0% |
| ! | TTATCAGCTTTTCTACTCTT+GGG | - | chr5.3:26830114-26830133 | None:intergenic | 30.0% |
| ! | TTCTTTCATTTTCTCAGAAG+AGG | - | chr5.3:26829069-26829088 | None:intergenic | 30.0% |
| ! | TTTATCAGCTTTTCTACTCT+TGG | - | chr5.3:26830115-26830134 | None:intergenic | 30.0% |
| !! | TACTTCAATCTACTTTTCTC+AGG | + | chr5.3:26827842-26827861 | MS.gene91933:intron | 30.0% |
| !! | TTCTTCTTCAATTTTGGAAG+AGG | - | chr5.3:26828732-26828751 | None:intergenic | 30.0% |
| !!! | GAGTGATTTGAATCCTTTTT+TGG | - | chr5.3:26828867-26828886 | None:intergenic | 30.0% |
| AAAGCGCAAGAAGAGAATAA+TGG | + | chr5.3:26829449-26829468 | MS.gene91933:CDS | 35.0% | |
| AAGCCAAAGAAGAGCTTAAA+TGG | + | chr5.3:26829242-26829261 | MS.gene91933:CDS | 35.0% | |
| AAGGTAGGAGATGAAGAAAT+AGG | + | chr5.3:26829815-26829834 | MS.gene91933:CDS | 35.0% | |
| ACAAAAACAGTTTAACCAGG+AGG | + | chr5.3:26830044-26830063 | MS.gene91933:CDS | 35.0% | |
| AGAAAAGAAAACACAGCTCT+AGG | + | chr5.3:26828994-26829013 | MS.gene91933:CDS | 35.0% | |
| AGATCACTATTTAGCGATAG+AGG | - | chr5.3:26828648-26828667 | None:intergenic | 35.0% | |
| CAAATATCTGCACCAATATC+TGG | + | chr5.3:26826658-26826677 | MS.gene91933:CDS | 35.0% | |
| CAGCTGAAATGGATATCATA+TGG | - | chr5.3:26828601-26828620 | None:intergenic | 35.0% | |
| CTAAGACAAATTGCATGTGA+TGG | - | chr5.3:26827335-26827354 | None:intergenic | 35.0% | |
| CTATCGCTAAATAGTGATCT+TGG | + | chr5.3:26828648-26828667 | MS.gene91933:CDS | 35.0% | |
| GAAAAGAAAACACAGCTCTA+GGG | + | chr5.3:26828995-26829014 | MS.gene91933:CDS | 35.0% | |
| GATATCAGTAGCAAATCTTG+GGG | - | chr5.3:26830020-26830039 | None:intergenic | 35.0% | |
| GTAGAAATCTTCGAGTAACA+AGG | + | chr5.3:26826576-26826595 | MS.gene91933:intron | 35.0% | |
| GTAGTTAGTGAAGCAATACA+AGG | - | chr5.3:26827825-26827844 | None:intergenic | 35.0% | |
| GTATGACAGGAAAGATCTAT+TGG | - | chr5.3:26827728-26827747 | None:intergenic | 35.0% | |
| GTCAAAGAAGAGAAAGATCT+TGG | + | chr5.3:26829575-26829594 | MS.gene91933:CDS | 35.0% | |
| GTCAAGGAAGAGAAAAATCT+TGG | + | chr5.3:26829347-26829366 | MS.gene91933:CDS | 35.0% | |
| GTCTAATCCAATTTCAACTG+TGG | + | chr5.3:26826627-26826646 | MS.gene91933:CDS | 35.0% | |
| GTTTACCGGGAGAAAAAAAA+AGG | - | chr5.3:26828111-26828130 | None:intergenic | 35.0% | |
| TAATTGCTGCCTCTGTTATA+AGG | + | chr5.3:26826451-26826470 | MS.gene91933:intron | 35.0% | |
| TCTCTCAAATGGAGATGAAA+AGG | + | chr5.3:26826750-26826769 | MS.gene91933:CDS | 35.0% | |
| TGAAATAGATGTGGTTGCAT+TGG | - | chr5.3:26827158-26827177 | None:intergenic | 35.0% | |
| TGAAGTAGAGTAGAAACGTT+TGG | + | chr5.3:26827127-26827146 | MS.gene91933:intron | 35.0% | |
| TTACCGGGAGAAAAAAAAAG+GGG | - | chr5.3:26828109-26828128 | None:intergenic | 35.0% | |
| TTCGCAAGGTAAAAGTTCTT+TGG | + | chr5.3:26827621-26827640 | MS.gene91933:intron | 35.0% | |
| TTGAGATGCAACATTAGCAA+CGG | - | chr5.3:26826788-26826807 | None:intergenic | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | - | chr5.3:26826978-26826997 | None:intergenic | 35.0% | |
| TTTCTTTCCCTATGGTTGTT+TGG | + | chr5.3:26828511-26828530 | MS.gene91933:intron | 35.0% | |
| ! | CTGAAAAGGCACAAGTTAAA+AGG | + | chr5.3:26828769-26828788 | MS.gene91933:CDS | 35.0% |
| ! | GTAACAATGCCGATAGATTT+TGG | - | chr5.3:26827879-26827898 | None:intergenic | 35.0% |
| ! | TATCAGCTTTTCTACTCTTG+GGG | - | chr5.3:26830113-26830132 | None:intergenic | 35.0% |
| ! | TTGTTCTCTTCTGGTGTTTT+CGG | - | chr5.3:26829296-26829315 | None:intergenic | 35.0% |
| AAAAGCTTGACCTTGTCCAA+CGG | - | chr5.3:26828704-26828723 | None:intergenic | 40.0% | |
| AAACTTCAGTCTTCTTGCAG+AGG | + | chr5.3:26826847-26826866 | MS.gene91933:CDS | 40.0% | |
| AAATGGAGATGAAAAGGCTC+AGG | + | chr5.3:26826756-26826775 | MS.gene91933:CDS | 40.0% | |
| AACCTTACTTGGCTTCAAAG+TGG | + | chr5.3:26828673-26828692 | MS.gene91933:CDS | 40.0% | |
| AAGATGATCTTGAGACACTC+AGG | + | chr5.3:26826806-26826825 | MS.gene91933:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTCAAA+TGG | + | chr5.3:26829164-26829183 | MS.gene91933:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTTAAG+TGG | + | chr5.3:26829623-26829642 | MS.gene91933:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTTGAA+TGG | + | chr5.3:26829701-26829720 | MS.gene91933:CDS | 40.0% | |
| AATCAGCAAAAGCTAGGCTA+AGG | + | chr5.3:26829984-26830003 | MS.gene91933:CDS | 40.0% | |
| ACCAAAGAAGAGAACAGTCT+TGG | + | chr5.3:26829269-26829288 | MS.gene91933:CDS | 40.0% | |
| AGAAAATGCCTTTGTTCACC+AGG | + | chr5.3:26827923-26827942 | MS.gene91933:CDS | 40.0% | |
| AGAAACTTCAGACTCAGTTG+AGG | - | chr5.3:26828310-26828329 | None:intergenic | 40.0% | |
| AGTGAAGCAATACAAGGGTA+TGG | - | chr5.3:26827819-26827838 | None:intergenic | 40.0% | |
| ATCAGCAAAAGCTAGGCTAA+GGG | + | chr5.3:26829985-26830004 | MS.gene91933:CDS | 40.0% | |
| ATGATATCCATTTCAGCTGC+TGG | + | chr5.3:26828602-26828621 | MS.gene91933:intron | 40.0% | |
| CACAAGTTAAAAGGACTACC+CGG | + | chr5.3:26828778-26828797 | MS.gene91933:CDS | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+CGG | + | chr5.3:26829245-26829264 | MS.gene91933:CDS | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+TGG | + | chr5.3:26829245-26829264 | MS.gene91933:CDS | 40.0% | |
| CCACCATTTAAGCTCTTCTT+TGG | - | chr5.3:26829554-26829573 | None:intergenic | 40.0% | |
| CTGATAAATTTGAGCGGAAG+AGG | + | chr5.3:26830127-26830146 | MS.gene91933:CDS | 40.0% | |
| CTTACAGACTAGTGTGAAGA+AGG | + | chr5.3:26829796-26829815 | MS.gene91933:CDS | 40.0% | |
| GAAAGCAGTGCTTTCAGAAA+AGG | + | chr5.3:26826693-26826712 | MS.gene91933:CDS | 40.0% | |
| GACTCATAGAACATACTCTG+CGG | + | chr5.3:26827765-26827784 | MS.gene91933:intron | 40.0% | |
| GAGAGGGATATTCTCTCAAA+TGG | + | chr5.3:26826739-26826758 | MS.gene91933:CDS | 40.0% | |
| GCAACATTAGCTCCAGATAT+TGG | - | chr5.3:26826673-26826692 | None:intergenic | 40.0% | |
| GTCAAAGAAGAGAAAGGTCT+TGG | + | chr5.3:26829191-26829210 | MS.gene91933:CDS | 40.0% | |
| GTTACTGATGTTTCAGAGCA+GGG | + | chr5.3:26829035-26829054 | MS.gene91933:CDS | 40.0% | |
| GTTCTCTCTGAATTTCTCAG+TGG | + | chr5.3:26827675-26827694 | MS.gene91933:intron | 40.0% | |
| TAACTTCATTGAAGGCTCGT+CGG | + | chr5.3:26827426-26827445 | MS.gene91933:intron | 40.0% | |
| TCCAAGACCTTTCTCTTCTT+TGG | - | chr5.3:26829195-26829214 | None:intergenic | 40.0% | |
| TCCAAGACTGTTCTCTTCTT+TGG | - | chr5.3:26829273-26829292 | None:intergenic | 40.0% | |
| TCTTCACTTAACAGCAAGTC+AGG | + | chr5.3:26830079-26830098 | MS.gene91933:CDS | 40.0% | |
| TGATCTTGGAGAACCTTACT+TGG | + | chr5.3:26828662-26828681 | MS.gene91933:CDS | 40.0% | |
| TGTTACTGATGTTTCAGAGC+AGG | + | chr5.3:26829034-26829053 | MS.gene91933:CDS | 40.0% | |
| TTACTGATGTTTCAGAGCAG+GGG | + | chr5.3:26829036-26829055 | MS.gene91933:CDS | 40.0% | |
| TTGTACTAAACAGCGTATCG+CGG | + | chr5.3:26827002-26827021 | MS.gene91933:intron | 40.0% | |
| ! | ATTTTCTCAGAAGAGGAACC+TGG | - | chr5.3:26829062-26829081 | None:intergenic | 40.0% |
| ! | CTGCCATTTAAGCTCTTCTT+TGG | - | chr5.3:26829248-26829267 | None:intergenic | 40.0% |
| ! | CTTTTACCTTGCGAACTTTC+AGG | - | chr5.3:26827616-26827635 | None:intergenic | 40.0% |
| ! | TCTGAGACCTTTCTCTTCTT+TGG | - | chr5.3:26829732-26829751 | None:intergenic | 40.0% |
| ! | TTGGACAAGGTCAAGCTTTT+GGG | + | chr5.3:26828704-26828723 | MS.gene91933:CDS | 40.0% |
| !!! | CTAGCTTTTGCTGATTCAGT+CGG | - | chr5.3:26829980-26829999 | None:intergenic | 40.0% |
| AACTTCATTGAAGGCTCGTC+GGG | + | chr5.3:26827427-26827446 | MS.gene91933:intron | 45.0% | |
| AAGGAAGAAGTCCTGGGAAA+TGG | + | chr5.3:26826305-26826324 | MS.gene91933:CDS | 45.0% | |
| AATGCCTTTGTTCACCAGGT+AGG | + | chr5.3:26827927-26827946 | MS.gene91933:intron | 45.0% | |
| ACGTTCTGATATTGGGCTTG+AGG | + | chr5.3:26827589-26827608 | MS.gene91933:CDS | 45.0% | |
| AGAAACGACGGTACCAAAGT+CGG | + | chr5.3:26829085-26829104 | MS.gene91933:CDS | 45.0% | |
| AGATGAAAGTGAATGCCTCC+TGG | - | chr5.3:26830062-26830081 | None:intergenic | 45.0% | |
| AGCTCTTATTCGTGGTCACT+TGG | + | chr5.3:26827484-26827503 | MS.gene91933:CDS | 45.0% | |
| AGTTCCTACCTGGTGAACAA+AGG | - | chr5.3:26827934-26827953 | None:intergenic | 45.0% | |
| CAGACTAGTGTGAAGAAGGT+AGG | + | chr5.3:26829800-26829819 | MS.gene91933:CDS | 45.0% | |
| CCAAAGAAGAGCTCAAATGG+TGG | + | chr5.3:26829167-26829186 | MS.gene91933:CDS | 45.0% | |
| CCAAAGAAGAGCTTAAGTGG+CGG | + | chr5.3:26829626-26829645 | MS.gene91933:CDS | 45.0% | |
| CCACCATTTGAGCTCTTCTT+TGG | - | chr5.3:26829170-26829189 | None:intergenic | 45.0% | |
| CCGCCATTTAAGCTCTTCTT+TGG | - | chr5.3:26829326-26829345 | None:intergenic | 45.0% | |
| CGACTGAATCAGCAAAAGCT+AGG | + | chr5.3:26829978-26829997 | MS.gene91933:CDS | 45.0% | |
| CGGCATTGTTACATCTACAC+TGG | + | chr5.3:26827887-26827906 | MS.gene91933:CDS | 45.0% | |
| CTAGTCTGTAAGACAGCAGT+AGG | - | chr5.3:26829788-26829807 | None:intergenic | 45.0% | |
| CTGCCATTCAAGCTCTTCTT+TGG | - | chr5.3:26829707-26829726 | None:intergenic | 45.0% | |
| GCCAAAGAAGAGAAAGGTCT+TGG | + | chr5.3:26829422-26829441 | MS.gene91933:CDS | 45.0% | |
| GGAGTTAGCGAAGACTTGAA+TGG | + | chr5.3:26829836-26829855 | MS.gene91933:CDS | 45.0% | |
| GGCTTATCGTTGTTCTCTTC+TGG | - | chr5.3:26829305-26829324 | None:intergenic | 45.0% | |
| GTTAGCGAAGACTTGAATGG+CGG | + | chr5.3:26829839-26829858 | MS.gene91933:CDS | 45.0% | |
| TAAACAGCGCAATAGCGTAG+CGG | - | chr5.3:26827051-26827070 | None:intergenic | 45.0% | |
| TAGCGATAGAGGAAACGCAT+GGG | - | chr5.3:26828637-26828656 | None:intergenic | 45.0% | |
| TCAGCAAAAGCTAGGCTAAG+GGG | + | chr5.3:26829986-26830005 | MS.gene91933:CDS | 45.0% | |
| TCAGTCGGAGCCATATAACT+CGG | - | chr5.3:26829965-26829984 | None:intergenic | 45.0% | |
| TCGAGTAACAAGGATGCACT+GGG | + | chr5.3:26826586-26826605 | MS.gene91933:CDS | 45.0% | |
| TCTCTGTCATCTTCAAGGGA+CGG | + | chr5.3:26830169-26830188 | MS.gene91933:CDS | 45.0% | |
| TCTGTCCAAGACCTTTCTCA+GGG | - | chr5.3:26829121-26829140 | None:intergenic | 45.0% | |
| TCTTGAGACACTCAGGCTTA+CGG | + | chr5.3:26826813-26826832 | MS.gene91933:CDS | 45.0% | |
| TTAGCGATAGAGGAAACGCA+TGG | - | chr5.3:26828638-26828657 | None:intergenic | 45.0% | |
| TTCGAGTAACAAGGATGCAC+TGG | + | chr5.3:26826585-26826604 | MS.gene91933:CDS | 45.0% | |
| TTCTGTCCAAGACCTTTCTC+AGG | - | chr5.3:26829122-26829141 | None:intergenic | 45.0% | |
| ! | AAGCCAAAGAAGAGCGTAAG+TGG | + | chr5.3:26829395-26829414 | MS.gene91933:CDS | 45.0% |
| ! | GGTGGTGTCAAAGAAGAGAA+AGG | + | chr5.3:26829185-26829204 | MS.gene91933:CDS | 45.0% |
| ! | GTTGGACAAGGTCAAGCTTT+TGG | + | chr5.3:26828703-26828722 | MS.gene91933:CDS | 45.0% |
| !! | AGCCACTTTGAAGCCAAGTA+AGG | - | chr5.3:26828678-26828697 | None:intergenic | 45.0% |
| !! | CACTCTCGACTCGACTTTTA+GGG | + | chr5.3:26828173-26828192 | MS.gene91933:intron | 45.0% |
| !! | CAGAAAGCACTAGAACAGGA+AGG | + | chr5.3:26829752-26829771 | MS.gene91933:CDS | 45.0% |
| !! | CAGACAGAAAGCACTAGAAC+AGG | + | chr5.3:26829748-26829767 | MS.gene91933:CDS | 45.0% |
| !! | GAAGAAACTTGACTCGGTGT+CGG | + | chr5.3:26828746-26828765 | MS.gene91933:CDS | 45.0% |
| !! | TCACTCATTGGTTTCAGCTC+AGG | + | chr5.3:26828881-26828900 | MS.gene91933:CDS | 45.0% |
| !! | TCACTCTCGACTCGACTTTT+AGG | + | chr5.3:26828172-26828191 | MS.gene91933:intron | 45.0% |
| !! | TCCAAGAGTGCCGAGTTATA+TGG | + | chr5.3:26829952-26829971 | MS.gene91933:CDS | 45.0% |
| !!! | CCTCCCCTTTTTTTTTCTCC+CGG | + | chr5.3:26828103-26828122 | MS.gene91933:intron | 45.0% |
| AAAGCTAGGCTAAGGGGACA+AGG | + | chr5.3:26829992-26830011 | MS.gene91933:CDS | 50.0% | |
| AAGCTCCTGATCCATTTCCC+AGG | - | chr5.3:26826319-26826338 | None:intergenic | 50.0% | |
| AGATGAAAAGGCTCAGGCAC+CGG | + | chr5.3:26826762-26826781 | MS.gene91933:CDS | 50.0% | |
| ATCAGGAGCTTACTCTCAGG+GGG | + | chr5.3:26826328-26826347 | MS.gene91933:CDS | 50.0% | |
| ATGGGGAAAGGAAGAAGTCC+TGG | + | chr5.3:26826298-26826317 | MS.gene91933:CDS | 50.0% | |
| CAGCTGCAAGCTCTTATTCG+TGG | + | chr5.3:26827476-26827495 | MS.gene91933:CDS | 50.0% | |
| CAGGCAGTGAAGCTCTTCTT+TGG | - | chr5.3:26829889-26829908 | None:intergenic | 50.0% | |
| CCGCCACTTAAGCTCTTCTT+TGG | - | chr5.3:26829629-26829648 | None:intergenic | 50.0% | |
| CCGGGAGAAAAAAAAAGGGG+AGG | - | chr5.3:26828106-26828125 | None:intergenic | 50.0% | |
| CTCTGTCATCTTCAAGGGAC+GGG | + | chr5.3:26830170-26830189 | MS.gene91933:CDS | 50.0% | |
| CTTCAAAGTGGCTTGACCGT+TGG | + | chr5.3:26828685-26828704 | MS.gene91933:CDS | 50.0% | |
| CTTTCACGGCAGGTGATTTC+CGG | - | chr5.3:26828800-26828819 | None:intergenic | 50.0% | |
| GAAGAGTCTTGCCCTGAGAA+AGG | + | chr5.3:26829107-26829126 | MS.gene91933:CDS | 50.0% | |
| GAAGTCCTGGGAAATGGATC+AGG | + | chr5.3:26826311-26826330 | MS.gene91933:CDS | 50.0% | |
| GATCAGGAGCTTACTCTCAG+GGG | + | chr5.3:26826327-26826346 | MS.gene91933:CDS | 50.0% | |
| GATGAAGCCAGCAGCTGAAA+TGG | - | chr5.3:26828612-26828631 | None:intergenic | 50.0% | |
| GATGCAACATTAGCAACGGC+CGG | - | chr5.3:26826784-26826803 | None:intergenic | 50.0% | |
| GCCATATAACTCGGCACTCT+TGG | - | chr5.3:26829956-26829975 | None:intergenic | 50.0% | |
| GGATCAGGAGCTTACTCTCA+GGG | + | chr5.3:26826326-26826345 | MS.gene91933:CDS | 50.0% | |
| GGCAGTGCCAAAGAAGAGAA+AGG | + | chr5.3:26829722-26829741 | MS.gene91933:CDS | 50.0% | |
| GTCTTCTTGCAGAGGCTATC+AGG | + | chr5.3:26826855-26826874 | MS.gene91933:CDS | 50.0% | |
| TAACTCGGCACTCTTGGACT+TGG | - | chr5.3:26829950-26829969 | None:intergenic | 50.0% | |
| TAGAACATACTCTGCGGCGT+AGG | + | chr5.3:26827771-26827790 | MS.gene91933:intron | 50.0% | |
| TCTTGCCCTGAGAAAGGTCT+TGG | + | chr5.3:26829113-26829132 | MS.gene91933:CDS | 50.0% | |
| TGAGCCCTCATCAGCTTTCA+CGG | - | chr5.3:26828814-26828833 | None:intergenic | 50.0% | |
| TGAGGTCCTGAAAGTTCGCA+AGG | + | chr5.3:26827607-26827626 | MS.gene91933:CDS | 50.0% | |
| TGGATCAGGAGCTTACTCTC+AGG | + | chr5.3:26826325-26826344 | MS.gene91933:CDS | 50.0% | |
| TGGGGAAAGGAAGAAGTCCT+GGG | + | chr5.3:26826299-26826318 | MS.gene91933:CDS | 50.0% | |
| TTTCACGGCAGGTGATTTCC+GGG | - | chr5.3:26828799-26828818 | None:intergenic | 50.0% | |
| ! | CCAAAGAAGAGCGTAAGTGG+CGG | + | chr5.3:26829398-26829417 | MS.gene91933:CDS | 50.0% |
| ! | GAGCTTAAATGGCGGTGTCA+AGG | + | chr5.3:26829331-26829350 | MS.gene91933:CDS | 50.0% |
| ! | TATGCGGGCTGATATGCTTC+TGG | + | chr5.3:26826908-26826927 | MS.gene91933:intron | 50.0% |
| !! | AAAGTGCAAGCATTGGCTCG+TGG | + | chr5.3:26827554-26827573 | MS.gene91933:CDS | 50.0% |
| ACCTGCCGTGAAAGCTGATG+AGG | + | chr5.3:26828806-26828825 | MS.gene91933:CDS | 55.0% | |
| AGTGGCTTGACCGTTGGACA+AGG | + | chr5.3:26828691-26828710 | MS.gene91933:CDS | 55.0% | |
| CCGCCACTTACGCTCTTCTT+TGG | - | chr5.3:26829401-26829420 | None:intergenic | 55.0% | |
| CCTGCCGTGAAAGCTGATGA+GGG | + | chr5.3:26828807-26828826 | MS.gene91933:CDS | 55.0% | |
| GCTGATGAGGGCTCAAGTTC+TGG | + | chr5.3:26828819-26828838 | MS.gene91933:CDS | 55.0% | |
| GGGCAAGACTCTTCCGACTT+TGG | - | chr5.3:26829101-26829120 | None:intergenic | 55.0% | |
| TCAGGAGCTTACTCTCAGGG+GGG | + | chr5.3:26826329-26826348 | MS.gene91933:CDS | 55.0% | |
| TCATCTTCAAGGGACGGGAC+TGG | + | chr5.3:26830175-26830194 | MS.gene91933:CDS | 55.0% | |
| TGAGCGGAAGAGGAGTTGCA+AGG | + | chr5.3:26830137-26830156 | MS.gene91933:CDS | 55.0% | |
| ! | GGCGGTGCCAAAGAAGAGAA+AGG | + | chr5.3:26829416-26829435 | MS.gene91933:CDS | 55.0% |
| !! | TGACTCGGTGTCGGCTGAAA+AGG | + | chr5.3:26828755-26828774 | MS.gene91933:CDS | 55.0% |
| CCCTCATCAGCTTTCACGGC+AGG | - | chr5.3:26828810-26828829 | None:intergenic | 60.0% | |
| GATGTTTCAGAGCAGGGGCC+AGG | + | chr5.3:26829041-26829060 | MS.gene91933:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 26826298 | 26830210 | 26826298 | ID=MS.gene91933 |
| chr5.3 | mRNA | 26826298 | 26830210 | 26826298 | ID=MS.gene91933.t1;Parent=MS.gene91933 |
| chr5.3 | exon | 26826298 | 26826399 | 26826298 | ID=MS.gene91933.t1.exon1;Parent=MS.gene91933.t1 |
| chr5.3 | CDS | 26826298 | 26826399 | 26826298 | ID=cds.MS.gene91933.t1;Parent=MS.gene91933.t1 |
| chr5.3 | exon | 26826580 | 26826876 | 26826580 | ID=MS.gene91933.t1.exon2;Parent=MS.gene91933.t1 |
| chr5.3 | CDS | 26826580 | 26826876 | 26826580 | ID=cds.MS.gene91933.t1;Parent=MS.gene91933.t1 |
| chr5.3 | exon | 26827440 | 26827628 | 26827440 | ID=MS.gene91933.t1.exon3;Parent=MS.gene91933.t1 |
| chr5.3 | CDS | 26827440 | 26827628 | 26827440 | ID=cds.MS.gene91933.t1;Parent=MS.gene91933.t1 |
| chr5.3 | exon | 26827864 | 26827944 | 26827864 | ID=MS.gene91933.t1.exon4;Parent=MS.gene91933.t1 |
| chr5.3 | CDS | 26827864 | 26827944 | 26827864 | ID=cds.MS.gene91933.t1;Parent=MS.gene91933.t1 |
| chr5.3 | exon | 26828618 | 26830210 | 26828618 | ID=MS.gene91933.t1.exon5;Parent=MS.gene91933.t1 |
| chr5.3 | CDS | 26828618 | 26830210 | 26828618 | ID=cds.MS.gene91933.t1;Parent=MS.gene91933.t1 |
| Gene Sequence |
| Protein sequence |
