AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92996

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92996.t1 MTR_1g107480 99.329 596 4 0 3 598 2 597 0.0 1186
MS.gene92996.t1 MTR_4g005880 78.532 545 117 0 54 598 86 630 0.0 898
MS.gene92996.t1 MTR_3g005970 31.621 253 155 5 119 355 117 367 3.96e-29 119
MS.gene92996.t1 MTR_4g013100 28.235 255 174 4 119 372 68 314 1.77e-28 116
MS.gene92996.t1 MTR_4g013090 28.794 257 168 5 120 372 68 313 4.01e-28 115
MS.gene92996.t1 MTR_1g112510 33.910 289 161 8 97 360 63 346 1.30e-27 115
MS.gene92996.t1 MTR_4g012960 26.772 254 176 4 119 372 67 310 7.80e-26 108
MS.gene92996.t1 MTR_6g007170 30.924 249 162 4 120 361 122 367 1.60e-23 103
MS.gene92996.t1 MTR_4g013135 29.297 256 170 6 119 372 67 313 4.84e-21 94.7
MS.gene92996.t1 MTR_8g033390 28.788 264 171 5 120 379 76 326 9.95e-21 94.0
MS.gene92996.t1 MTR_2g101840 28.462 260 168 7 119 372 67 314 1.32e-19 90.5
MS.gene92996.t1 MTR_6g007175 28.629 248 150 5 120 361 91 317 3.49e-18 86.7
MS.gene92996.t1 MTR_8g033400 26.482 253 173 6 99 346 67 311 4.78e-17 83.2
MS.gene92996.t1 MTR_8g033410 25.197 254 177 5 120 367 79 325 5.29e-17 82.8
MS.gene92996.t1 MTR_7g075830 29.707 239 144 8 120 341 57 288 8.27e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92996.t1 AT4G34200 82.823 588 97 2 15 598 16 603 0.0 981
MS.gene92996.t1 AT3G19480 82.155 566 99 1 35 598 23 588 0.0 943
MS.gene92996.t1 AT1G17745 78.269 543 118 0 56 598 82 624 0.0 885
MS.gene92996.t1 AT1G17745 74.211 570 120 2 56 598 82 651 0.0 864
MS.gene92996.t1 AT1G72190 29.181 281 183 5 76 347 77 350 1.11e-27 115
MS.gene92996.t1 AT5G14780 31.667 240 160 3 126 361 112 351 5.04e-27 113
MS.gene92996.t1 AT5G14780 31.667 240 160 3 126 361 100 339 9.62e-27 112
MS.gene92996.t1 AT1G79870 28.627 255 171 6 120 372 68 313 1.07e-26 111
MS.gene92996.t1 AT5G14780 31.667 240 160 3 126 361 126 365 1.32e-26 112
MS.gene92996.t1 AT1G68010 32.753 287 167 7 97 360 63 346 4.44e-25 108
MS.gene92996.t1 AT1G68010 32.482 274 159 7 97 347 63 333 1.35e-23 103
MS.gene92996.t1 AT1G68010 32.986 288 166 8 97 360 63 347 1.52e-23 103
MS.gene92996.t1 AT1G12550 28.631 241 165 4 120 358 75 310 1.60e-23 102
MS.gene92996.t1 AT2G45630 28.125 256 173 6 120 372 91 338 4.70e-22 98.2
MS.gene92996.t1 AT1G79870 27.559 254 156 6 120 372 68 294 2.68e-21 95.1

Find 181 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGAGCATCTTAT+TGG 0.186509 1.2:-80226770 None:intergenic
GGCGGAGGAGAGAGGGAGTT+TGG 0.212385 1.2:-80225511 None:intergenic
GAGATTCCACGTTAGCAATT+TGG 0.237494 1.2:-80228051 None:intergenic
CTTGTTAGAGCATTGGATTC+TGG 0.237598 1.2:+80226865 MS.gene92996:CDS
ACACTTGCTGTAATGGGATT+TGG 0.255805 1.2:+80226571 MS.gene92996:CDS
GCTAGTGCCATATCAGATTC+AGG 0.283199 1.2:+80228079 MS.gene92996:CDS
GTGAAGAGAGACGGAGGGTT+TGG 0.285439 1.2:-80225467 None:intergenic
CATAACCAACTTGCTGTCTT+TGG 0.290705 1.2:-80227019 None:intergenic
GTTCACGAAAACACTGGATA+TGG 0.294301 1.2:-80227924 None:intergenic
TGTTGATCTTGCTGAGAAAC+TGG 0.306465 1.2:+80227766 MS.gene92996:CDS
AAGGTAGCATTATACTTTGC+AGG 0.338794 1.2:+80228185 MS.gene92996:CDS
CGTGAAGTGTTTGAATCTTC+CGG 0.339399 1.2:+80225768 MS.gene92996:CDS
CACTTGCTGTAATGGGATTT+GGG 0.344965 1.2:+80226572 MS.gene92996:CDS
GGAGTTTGGAGGAGAGAGAA+AGG 0.350829 1.2:-80225497 None:intergenic
TGAAGAGAGACGGAGGGTTT+GGG 0.355755 1.2:-80225466 None:intergenic
GCTGATCGTGCTCATGCTAT+TGG 0.358730 1.2:+80226670 MS.gene92996:CDS
GAGGAGAGAGTTATTCTTGA+TGG 0.369656 1.2:+80227995 MS.gene92996:CDS
TCTAACTCCTTTCTTCATCT+TGG 0.371423 1.2:-80226800 None:intergenic
GGGAAGACACTTGCTGTAAT+GGG 0.381131 1.2:+80226565 MS.gene92996:CDS
ACATGGTTAATACAGGGAAA+TGG 0.384206 1.2:+80226509 MS.gene92996:intron
GACCTCCCCTGAATCTGATA+TGG 0.384239 1.2:-80228086 None:intergenic
GAAGACGACGAGGGAACGGC+GGG 0.395159 1.2:-80225562 None:intergenic
AGACGAGTGTCAAGATCATC+AGG 0.412057 1.2:-80227866 None:intergenic
CCCACCTTTCCAATCATACC+TGG 0.415387 1.2:-80228220 None:intergenic
ATCTTGGTGCAAAGCTCCTC+AGG 0.418039 1.2:-80225699 None:intergenic
CCACGTTAGCAATTTGGACT+TGG 0.421951 1.2:-80228045 None:intergenic
ACGGAGGGAGACGGAGAAGG+CGG 0.423781 1.2:-80225529 None:intergenic
TGGGAAGACACTTGCTGTAA+TGG 0.425768 1.2:+80226564 MS.gene92996:CDS
GGAAAGGTGGGAAGCATCTT+GGG 0.427465 1.2:+80228232 MS.gene92996:CDS
TATGTTGGAGTTTCCCTAGT+TGG 0.429161 1.2:+80226544 MS.gene92996:CDS
GTAGATCAACCAGGTATGAT+TGG 0.432608 1.2:+80228211 MS.gene92996:CDS
CAGCAAGTGTCTTCCCAACT+AGG 0.432947 1.2:-80226558 None:intergenic
GAGGGAGACGGAGAAGGCGG+AGG 0.434071 1.2:-80225526 None:intergenic
AAATAGCAGAAGCTGTCGTT+GGG 0.435352 1.2:+80227205 MS.gene92996:CDS
AGCATCACAAAGAGAGATCT+TGG 0.436486 1.2:-80225715 None:intergenic
CACGGGATCGCGCTCTTAGC+TGG 0.436535 1.2:+80225915 MS.gene92996:CDS
CTCAAGGTTGTTGGTAGAGC+TGG 0.437574 1.2:+80225798 MS.gene92996:CDS
TGGAAAGGTGGGAAGCATCT+TGG 0.437963 1.2:+80228231 MS.gene92996:CDS
CGCTACCGAACATGGTTGCT+TGG 0.440707 1.2:+80225851 MS.gene92996:CDS
CATGGTTAATACAGGGAAAT+GGG 0.442636 1.2:+80226510 MS.gene92996:intron
GAGGAGAGAGAAAGGGAAGA+TGG 0.443990 1.2:-80225489 None:intergenic
AAACACTTCACGTGAGACTT+TGG 0.446385 1.2:-80225757 None:intergenic
GGAAGTAGCGTTAGCGGCGG+CGG 0.448739 1.2:-80225445 None:intergenic
GGGTAGGTTGGCTGTCCAAC+TGG 0.450313 1.2:+80227787 MS.gene92996:CDS
TTCAGGGGAGGTCACGGTGG+AGG 0.452073 1.2:+80228096 MS.gene92996:CDS
ATGTTGGAGTTTCCCTAGTT+GGG 0.453564 1.2:+80226545 MS.gene92996:CDS
AACCAACTTGCTGTCTTTGG+TGG 0.455394 1.2:-80227016 None:intergenic
GCTGAAAAGCTCGGCGAAGC+TGG 0.458612 1.2:+80225624 MS.gene92996:CDS
ATGAATTCAAGTGGATTCTC+AGG 0.462448 1.2:-80228022 None:intergenic
AAAGAATCTTTGCAAAGGAT+TGG 0.466060 1.2:+80228349 MS.gene92996:CDS
AAGCAGGCTGTGATGGCAAT+TGG 0.470416 1.2:+80228307 MS.gene92996:CDS
GCACGATCAGCAGGAGCATA+AGG 0.471790 1.2:-80226658 None:intergenic
AACAACCAAGCAACCATGTT+CGG 0.472937 1.2:-80225856 None:intergenic
GTAATGGGATTTGGGAAGGT+TGG 0.474064 1.2:+80226580 MS.gene92996:CDS
GGATGCACTTGTTAGAGCAT+TGG 0.476077 1.2:+80226858 MS.gene92996:CDS
CTGTCGTTGGGGCTTTGAAA+GGG 0.476987 1.2:+80227217 MS.gene92996:CDS
GGATTCTGGAATTGTAGCTC+AGG 0.477094 1.2:+80226879 MS.gene92996:CDS
GGAGGAGAGAGGGAGTTTGG+AGG 0.479184 1.2:-80225508 None:intergenic
ACATTTAATCTTACAACTTG+AGG 0.482522 1.2:-80228402 None:intergenic
TTGAGCATCTTATTGGTAGC+AGG 0.483290 1.2:-80226763 None:intergenic
AAGATCCAACCTTTGTAAGA+TGG 0.485383 1.2:-80228141 None:intergenic
GTAACTTACCTGAGCTTCCA+TGG 0.486993 1.2:-80227082 None:intergenic
TTCTCAGCAAGATCAACAAA+TGG 0.487878 1.2:-80227761 None:intergenic
TGCTAAGGGGCTTGGTATGA+AGG 0.488921 1.2:+80226621 MS.gene92996:CDS
AGATCCAACCTTTGTAAGAT+GGG 0.489776 1.2:-80228140 None:intergenic
TGGGAGAGAAGTAAGTATGT+TGG 0.490032 1.2:+80226529 MS.gene92996:CDS
GCTAGGCGTGCTAAGGGGCT+TGG 0.491466 1.2:+80226613 MS.gene92996:CDS
AAAACAAATTCTTCAACAGC+AGG 0.493626 1.2:-80228379 None:intergenic
TTATTGGTAGCAGGCGTAAG+AGG 0.493736 1.2:-80226754 None:intergenic
CGAAGACGACGAGGGAACGG+CGG 0.494219 1.2:-80225563 None:intergenic
CGGAGAAGGCGGAGGAGAGA+GGG 0.496667 1.2:-80225518 None:intergenic
GCCATCACAGCCTGCTTGCG+TGG 0.497834 1.2:-80228301 None:intergenic
ATTTGGGAAGGTTGGAACTG+AGG 0.497988 1.2:+80226588 MS.gene92996:CDS
AGACGAAGACGACGAGGGAA+CGG 0.498132 1.2:-80225566 None:intergenic
TGCCAGTACCATGGAAGCTC+AGG 0.500424 1.2:+80227074 MS.gene92996:CDS
GGTTTGGGAAGTAGCGTTAG+CGG 0.502137 1.2:-80225451 None:intergenic
GAAATAGCAGAAGCTGTCGT+TGG 0.503793 1.2:+80227204 MS.gene92996:CDS
TCCACGCAAGCAGGCTGTGA+TGG 0.504167 1.2:+80228300 MS.gene92996:CDS
CATGGCTAGAAATGTTGCTC+AGG 0.505750 1.2:+80225938 MS.gene92996:CDS
TTCACGAAAACACTGGATAT+GGG 0.506220 1.2:-80227923 None:intergenic
GTTACTGCAACACCTCATCT+TGG 0.506235 1.2:+80227051 MS.gene92996:CDS
TGAGGTTGCTAGGCGTGCTA+AGG 0.507332 1.2:+80226606 MS.gene92996:CDS
GGTGGAAGACTCAAGGTTGT+TGG 0.507539 1.2:+80225789 MS.gene92996:CDS
TACCTGAGCTTCCATGGTAC+TGG 0.508674 1.2:-80227076 None:intergenic
TTGGCTGTCCAACTGGTAGC+AGG 0.509470 1.2:+80227794 MS.gene92996:CDS
GAGTTTGGAGGAGAGAGAAA+GGG 0.509782 1.2:-80225496 None:intergenic
TGGTATTGATAACGTGGATC+TGG 0.510283 1.2:+80225824 MS.gene92996:CDS
CTGGCCGCCGCTACCGAACA+TGG 0.510644 1.2:+80225843 MS.gene92996:CDS
ACGGAGAAGGCGGAGGAGAG+AGG 0.514088 1.2:-80225519 None:intergenic
GCTGTCGTTGGGGCTTTGAA+AGG 0.514440 1.2:+80227216 MS.gene92996:CDS
GGGACGGAGGGAGACGGAGA+AGG 0.516055 1.2:-80225532 None:intergenic
GGGAAGATGGTGAAGAGAGA+CGG 0.516368 1.2:-80225476 None:intergenic
AACTTGCTGTCTTTGGTGGG+TGG 0.516646 1.2:-80227012 None:intergenic
TGCTGAGAAACTGGGTAGGT+TGG 0.518778 1.2:+80227775 MS.gene92996:CDS
AAGATGGTGAAGAGAGACGG+AGG 0.519955 1.2:-80225473 None:intergenic
TCAGGGGAGGTCACGGTGGA+GGG 0.520156 1.2:+80228097 MS.gene92996:CDS
CTAGTGCCATATCAGATTCA+GGG 0.520803 1.2:+80228080 MS.gene92996:CDS
AGCGGCGGCAACAGTGTTAG+CGG 0.522757 1.2:-80225889 None:intergenic
GAGGTTGCTAGGCGTGCTAA+GGG 0.523235 1.2:+80226607 MS.gene92996:CDS
GGGTTTAGCGTCGAGAGAAG+AGG 0.523972 1.2:-80225589 None:intergenic
AGACGACGAGGGAACGGCGG+GGG 0.527589 1.2:-80225560 None:intergenic
CTCCTCAGGAGTGAGATTGT+AGG 0.528475 1.2:-80225685 None:intergenic
ACCAGGTATGATTGGAAAGG+TGG 0.534240 1.2:+80228219 MS.gene92996:CDS
AAGGATTGCTCCACGCAAGC+AGG 0.534675 1.2:+80228291 MS.gene92996:CDS
CGCGATCCCGTGTTCAGCGG+CGG 0.534842 1.2:-80225904 None:intergenic
ATAGCATGAGCACGATCAGC+AGG 0.535627 1.2:-80226667 None:intergenic
CTGTTGCCGCCGCTGAACAC+GGG 0.536140 1.2:+80225898 MS.gene92996:CDS
GTTGTGGGGACGGAGGGAGA+CGG 0.538697 1.2:-80225538 None:intergenic
CGCTTCCTCCTGCTACCAGT+TGG 0.547036 1.2:-80227802 None:intergenic
AGGTTGGAACTGAGGTTGCT+AGG 0.547137 1.2:+80226596 MS.gene92996:CDS
ACCAACTTGCTGTCTTTGGT+GGG 0.548749 1.2:-80227015 None:intergenic
CCAAGTCCAAATTGCTAACG+TGG 0.549587 1.2:+80228045 MS.gene92996:CDS
CAAGCAACCATGTTCGGTAG+CGG 0.550793 1.2:-80225850 None:intergenic
GCTGATGCTTCTATCAAAGC+TGG 0.551395 1.2:+80225960 MS.gene92996:CDS
ACTGTTGCCGCCGCTGAACA+CGG 0.551728 1.2:+80225897 MS.gene92996:CDS
AAGAGGAGACGAAGACGACG+AGG 0.552113 1.2:-80225572 None:intergenic
TACTGCAGTCAATGCACCAA+TGG 0.553293 1.2:+80227251 MS.gene92996:CDS
ATCAGATTCAGGGGAGGTCA+CGG 0.555338 1.2:+80228090 MS.gene92996:CDS
CACGGTGGAGGGTCGTGTGA+AGG 0.556967 1.2:+80228108 MS.gene92996:CDS
TGCTGTAATGGGATTTGGGA+AGG 0.561363 1.2:+80226576 MS.gene92996:CDS
CTTCGTGCTATGATAACAAA+GGG 0.568014 1.2:+80227890 MS.gene92996:CDS
CTTTGCAAAGATTCTTTGCG+TGG 0.570600 1.2:-80228343 None:intergenic
AAGTGACTTACGCTTCCGCT+AGG 0.571734 1.2:+80227840 MS.gene92996:CDS
GAAGTTGATGTGAGTTTGGA+AGG 0.575576 1.2:+80228166 MS.gene92996:CDS
ATCTTCCGGTGGAAGACTCA+AGG 0.576123 1.2:+80225782 MS.gene92996:CDS
AATGTCAGCTTCATGAGTGT+TGG 0.576599 1.2:+80228268 MS.gene92996:CDS
TGTCGTTGGGGCTTTGAAAG+GGG 0.577535 1.2:+80227218 MS.gene92996:CDS
AGCAAGTGTCTTCCCAACTA+GGG 0.578467 1.2:-80226557 None:intergenic
GCGGCAACAGTGTTAGCGGT+GGG 0.581834 1.2:-80225885 None:intergenic
CAACTGGTAGCAGGAGGAAG+CGG 0.583181 1.2:+80227803 MS.gene92996:CDS
CCAGGTATGATTGGAAAGGT+GGG 0.583244 1.2:+80228220 MS.gene92996:CDS
GTGGAGGGTCGTGTGAAGGA+TGG 0.585025 1.2:+80228112 MS.gene92996:CDS
GACTTCACTGCTAAACAAAG+AGG 0.591938 1.2:+80227959 MS.gene92996:CDS
TCTTCGTGCTATGATAACAA+AGG 0.593071 1.2:+80227889 MS.gene92996:CDS
AGTACCTCTGAGGAAACCAT+TGG 0.593260 1.2:-80227267 None:intergenic
GATCCAACCTTTGTAAGATG+GGG 0.598278 1.2:-80228139 None:intergenic
TCAGCTTCATGAGTGTTGGA+AGG 0.600265 1.2:+80228272 MS.gene92996:CDS
AGAGGAGACGAAGACGACGA+GGG 0.600793 1.2:-80225571 None:intergenic
TGGACTTGGATGAATTCAAG+TGG 0.600925 1.2:-80228031 None:intergenic
AGTGACTTACGCTTCCGCTA+GGG 0.601349 1.2:+80227841 MS.gene92996:CDS
GAGCGCGATCCCGTGTTCAG+CGG 0.601676 1.2:-80225907 None:intergenic
GATCGCGCTCTTAGCTGGCA+TGG 0.602254 1.2:+80225920 MS.gene92996:CDS
GTTGTTGGTAGAGCTGGTGT+TGG 0.603479 1.2:+80225804 MS.gene92996:CDS
CACGCAAAGAATCTTTGCAA+AGG 0.603720 1.2:+80228344 MS.gene92996:CDS
ATTGTTAATGTTGCTCGTGG+TGG 0.608712 1.2:+80226823 MS.gene92996:CDS
GGCGGCAACAGTGTTAGCGG+TGG 0.609033 1.2:-80225886 None:intergenic
TCATCTTGGTGCCAGTACCA+TGG 0.610967 1.2:+80227065 MS.gene92996:CDS
GCAACCATGTTCGGTAGCGG+CGG 0.611449 1.2:-80225847 None:intergenic
AGATGGTGAAGAGAGACGGA+GGG 0.611532 1.2:-80225472 None:intergenic
ATGGTACTGGCACCAAGATG+AGG 0.614100 1.2:-80227063 None:intergenic
AACAACCTTGAGTCTTCCAC+CGG 0.614270 1.2:-80225787 None:intergenic
GTCCTCGTCGCTGAAAAGCT+CGG 0.619802 1.2:+80225615 MS.gene92996:CDS
TTGGGAAGTAGCGTTAGCGG+CGG 0.621158 1.2:-80225448 None:intergenic
AACTAAGTTCACGAAAACAC+TGG 0.623332 1.2:-80227930 None:intergenic
TGCACCAATGGTTTCCTCAG+AGG 0.628022 1.2:+80227263 MS.gene92996:CDS
AGGTTGCTAGGCGTGCTAAG+GGG 0.630349 1.2:+80226608 MS.gene92996:CDS
TCAACCAGGTATGATTGGAA+AGG 0.630443 1.2:+80228216 MS.gene92996:CDS
GTTGATCTTGCTGAGAAACT+GGG 0.632655 1.2:+80227767 MS.gene92996:CDS
AGAATTGTTAATGTTGCTCG+TGG 0.642633 1.2:+80226820 MS.gene92996:CDS
GATGCTCTTATCGTTCGTAG+TGG 0.657323 1.2:+80225732 MS.gene92996:CDS
ACTTCACTGCTAAACAAAGA+GGG 0.657467 1.2:+80227960 MS.gene92996:CDS
ACCCACCAAAGACAGCAAGT+TGG 0.658654 1.2:+80227014 MS.gene92996:CDS
GAAGTGTTTGAATCTTCCGG+TGG 0.658805 1.2:+80225771 MS.gene92996:CDS
ATCCAACCTTTGTAAGATGG+GGG 0.663549 1.2:-80228138 None:intergenic
TAGTGCCATATCAGATTCAG+GGG 0.665071 1.2:+80228081 MS.gene92996:CDS
GACGAGTGTCAAGATCATCA+GGG 0.667404 1.2:-80227865 None:intergenic
AAGATCATCAGGGGCCCTAG+CGG 0.668439 1.2:-80227855 None:intergenic
AAGAGGGCTAAGAATTACTG+AGG 0.668513 1.2:+80227976 MS.gene92996:CDS
TGCAGGCAAGTAGATCAACC+AGG 0.669453 1.2:+80228202 MS.gene92996:CDS
CTCCTACAATCTCACTCCTG+AGG 0.670177 1.2:+80225683 MS.gene92996:CDS
CAAAGAGATGAAATCAGCGG+TGG 0.673605 1.2:-80226725 None:intergenic
AGATTCAGGGGAGGTCACGG+TGG 0.674117 1.2:+80228093 MS.gene92996:CDS
GCTGTCCAACTGGTAGCAGG+AGG 0.676150 1.2:+80227797 MS.gene92996:CDS
AAGACGACGAGGGAACGGCG+GGG 0.677271 1.2:-80225561 None:intergenic
ACGAGTGTCAAGATCATCAG+GGG 0.682389 1.2:-80227864 None:intergenic
TGCCATATCAGATTCAGGGG+AGG 0.684990 1.2:+80228084 MS.gene92996:CDS
AATAGCAGAAGCTGTCGTTG+GGG 0.700433 1.2:+80227206 MS.gene92996:CDS
GTGCAAAGAGATGAAATCAG+CGG 0.712158 1.2:-80226728 None:intergenic
ATCTTGCTGAGAAACTGGGT+AGG 0.734226 1.2:+80227771 MS.gene92996:CDS
TGGTGTTGGTATTGATAACG+TGG 0.740226 1.2:+80225818 MS.gene92996:CDS
TCGTGGTGGAGTCATTGACG+AGG 0.747608 1.2:+80226837 MS.gene92996:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATCATGAAATAAA+AGG - chr1.2:80227316-80227335 None:intergenic 10.0%
!! TAATTTAAGTAAACTAAAAG+TGG - chr1.2:80226919-80226938 None:intergenic 15.0%
!!! TTTTTTAGTGTTAGTTATTT+GGG + chr1.2:80226064-80226083 MS.gene92996:intron 15.0%
!! TGAGATCTAATGATATATAT+GGG + chr1.2:80226236-80226255 MS.gene92996:intron 20.0%
!! TTGAGATCTAATGATATATA+TGG + chr1.2:80226235-80226254 MS.gene92996:intron 20.0%
!! TTTATATTGTTAACTACTAG+TGG + chr1.2:80226124-80226143 MS.gene92996:intron 20.0%
!! TTTGAGAAAATGACATAATT+CGG - chr1.2:80226413-80226432 None:intergenic 20.0%
!!! AATGAGTTTTTTTTATTGCT+CGG + chr1.2:80227579-80227598 MS.gene92996:intron 20.0%
!!! CAAAGAATTTAGAATGATTT+TGG - chr1.2:80227400-80227419 None:intergenic 20.0%
!!! GTTTTTTAGTGTTAGTTATT+TGG + chr1.2:80226063-80226082 MS.gene92996:intron 20.0%
!!! TAGTATTTATTTTAACCAGT+TGG - chr1.2:80227510-80227529 None:intergenic 20.0%
!!! TCATATATTGAAAACGATTT+TGG + chr1.2:80227439-80227458 MS.gene92996:intron 20.0%
!!! TCGTTTTCAATATATGAATA+TGG - chr1.2:80227436-80227455 None:intergenic 20.0%
! AAAAACACAACAAAATCATC+AGG - chr1.2:80226049-80226068 None:intergenic 25.0%
! AATAAATACTACTCAAGTGA+AGG + chr1.2:80227519-80227538 MS.gene92996:intron 25.0%
! AGATCTAATGATATATATGG+GGG + chr1.2:80226238-80226257 MS.gene92996:intron 25.0%
! ATACAAAATGATTCATGGAT+TGG + chr1.2:80227649-80227668 MS.gene92996:intron 25.0%
! ATATTGCTTGGATATAGATA+AGG - chr1.2:80227372-80227391 None:intergenic 25.0%
! GAGATCTAATGATATATATG+GGG + chr1.2:80226237-80226256 MS.gene92996:intron 25.0%
! GATTTGAGAAATCTAATACA+TGG + chr1.2:80227551-80227570 MS.gene92996:intron 25.0%
! TCCTAATACAAAATGATTCA+TGG + chr1.2:80227644-80227663 MS.gene92996:intron 25.0%
! TTATCTATATCCAAGCAATA+TGG + chr1.2:80227371-80227390 MS.gene92996:intron 25.0%
!! GCATAAGTTATTAGTTGATA+TGG + chr1.2:80226466-80226485 MS.gene92996:intron 25.0%
!! TAAAATTTTCTGTGTAAAGG+AGG + chr1.2:80226164-80226183 MS.gene92996:intron 25.0%
!! TCCATGAATCATTTTGTATT+AGG - chr1.2:80227648-80227667 None:intergenic 25.0%
!! TGGTAAAATTTTCTGTGTAA+AGG + chr1.2:80226161-80226180 MS.gene92996:intron 25.0%
!!! AAAACGATTTTGGAACAAAA+TGG + chr1.2:80227449-80227468 MS.gene92996:intron 25.0%
!!! ATTGAATTAGTGTTGATACA+TGG + chr1.2:80226492-80226511 MS.gene92996:intron 25.0%
AAAACAAATTCTTCAACAGC+AGG - chr1.2:80228382-80228401 None:intergenic 30.0%
AAAGAATCTTTGCAAAGGAT+TGG + chr1.2:80228349-80228368 MS.gene92996:CDS 30.0%
AACACCCATTACAGATTATA+CGG - chr1.2:80226289-80226308 None:intergenic 30.0%
AAGCTATAACTCATAGTCAT+AGG - chr1.2:80227119-80227138 None:intergenic 30.0%
GTTGATACATGGTTAATACA+GGG + chr1.2:80226503-80226522 MS.gene92996:intron 30.0%
TCTTCCGTATAATCTGTAAT+GGG + chr1.2:80226282-80226301 MS.gene92996:intron 30.0%
TGTTGATACATGGTTAATAC+AGG + chr1.2:80226502-80226521 MS.gene92996:intron 30.0%
TTCTTCCGTATAATCTGTAA+TGG + chr1.2:80226281-80226300 MS.gene92996:intron 30.0%
TTTCAAAGGTTATTAGACAC+TGG - chr1.2:80227158-80227177 None:intergenic 30.0%
! ATAGTTTGTGTCTTTGTTTC+AGG + chr1.2:80226963-80226982 MS.gene92996:intron 30.0%
!! ATTGGAGTTGGTGATAAATT+TGG + chr1.2:80227667-80227686 MS.gene92996:intron 30.0%
!! ATTTTGGAAACCATATTGCT+TGG - chr1.2:80227384-80227403 None:intergenic 30.0%
!!! TTTTGAAGTTGATGTGAGTT+TGG + chr1.2:80228162-80228181 MS.gene92996:CDS 30.0%
AACTAAGTTCACGAAAACAC+TGG - chr1.2:80227933-80227952 None:intergenic 35.0%
AAGATCCAACCTTTGTAAGA+TGG - chr1.2:80228144-80228163 None:intergenic 35.0%
AAGGTAGCATTATACTTTGC+AGG + chr1.2:80228185-80228204 MS.gene92996:CDS 35.0%
ACATGGTTAATACAGGGAAA+TGG + chr1.2:80226509-80226528 MS.gene92996:intron 35.0%
ACTTCACTGCTAAACAAAGA+GGG + chr1.2:80227960-80227979 MS.gene92996:CDS 35.0%
AGAATTGTTAATGTTGCTCG+TGG + chr1.2:80226820-80226839 MS.gene92996:CDS 35.0%
AGATCCAACCTTTGTAAGAT+GGG - chr1.2:80228143-80228162 None:intergenic 35.0%
AGTAACAATATCAAGAGGCA+AGG - chr1.2:80227340-80227359 None:intergenic 35.0%
ATAGTCATAGGCAATTGCTT+AGG - chr1.2:80227107-80227126 None:intergenic 35.0%
CATGGTTAATACAGGGAAAT+GGG + chr1.2:80226510-80226529 MS.gene92996:intron 35.0%
CTCATCATTGAGCATCTTAT+TGG - chr1.2:80226773-80226792 None:intergenic 35.0%
CTTCGTGCTATGATAACAAA+GGG + chr1.2:80227890-80227909 MS.gene92996:CDS 35.0%
GAGTTAACCACGTATATTTG+AGG - chr1.2:80226201-80226220 None:intergenic 35.0%
GATAAAGCCAGCTTCAAAAT+TGG - chr1.2:80227615-80227634 None:intergenic 35.0%
GATGCAGTAACAATATCAAG+AGG - chr1.2:80227345-80227364 None:intergenic 35.0%
TCTAACTCCTTTCTTCATCT+TGG - chr1.2:80226803-80226822 None:intergenic 35.0%
TCTTCGTGCTATGATAACAA+AGG + chr1.2:80227889-80227908 MS.gene92996:CDS 35.0%
TTCACGAAAACACTGGATAT+GGG - chr1.2:80227926-80227945 None:intergenic 35.0%
TTCTCAGCAAGATCAACAAA+TGG - chr1.2:80227764-80227783 None:intergenic 35.0%
TTCTTGTCCTCAAATATACG+TGG + chr1.2:80226191-80226210 MS.gene92996:intron 35.0%
TTTGAAAATGATGACCAGGA+AGG + chr1.2:80227171-80227190 MS.gene92996:intron 35.0%
! AACCTTTGAAAATGATGACC+AGG + chr1.2:80227167-80227186 MS.gene92996:intron 35.0%
! ACATTGTCACTTCTGATCAA+AGG + chr1.2:80226339-80226358 MS.gene92996:intron 35.0%
! ACTTTTGCCAAGATGAAGAA+AGG + chr1.2:80226793-80226812 MS.gene92996:CDS 35.0%
! ATGAATTCAAGTGGATTCTC+AGG - chr1.2:80228025-80228044 None:intergenic 35.0%
! TTCCTGGTCATCATTTTCAA+AGG - chr1.2:80227172-80227191 None:intergenic 35.0%
!! AATGATTCATGGATTGGAGT+TGG + chr1.2:80227655-80227674 MS.gene92996:intron 35.0%
!! TGTAATGGGTGTTAATGTTG+TGG + chr1.2:80226296-80226315 MS.gene92996:intron 35.0%
!! TTGTTAACTACTAGTGGACT+AGG + chr1.2:80226130-80226149 MS.gene92996:intron 35.0%
AAACACTTCACGTGAGACTT+TGG - chr1.2:80225760-80225779 None:intergenic 40.0%
AAAGCCAGCTTCAAAATTGG+AGG - chr1.2:80227612-80227631 None:intergenic 40.0%
AAATAGCAGAAGCTGTCGTT+GGG + chr1.2:80227205-80227224 MS.gene92996:CDS 40.0%
AACAACCAAGCAACCATGTT+CGG - chr1.2:80225859-80225878 None:intergenic 40.0%
AAGAGGGCTAAGAATTACTG+AGG + chr1.2:80227976-80227995 MS.gene92996:CDS 40.0%
AAGCCAGCTTCAAAATTGGA+GGG - chr1.2:80227611-80227630 None:intergenic 40.0%
AATGTCAGCTTCATGAGTGT+TGG + chr1.2:80228268-80228287 MS.gene92996:CDS 40.0%
AGCATCACAAAGAGAGATCT+TGG - chr1.2:80225718-80225737 None:intergenic 40.0%
ATCCAACCTTTGTAAGATGG+GGG - chr1.2:80228141-80228160 None:intergenic 40.0%
ATGTTGGAGTTTCCCTAGTT+GGG + chr1.2:80226545-80226564 MS.gene92996:CDS 40.0%
ATTAGACACTGGTGGCAAAA+GGG - chr1.2:80227147-80227166 None:intergenic 40.0%
ATTGTTAATGTTGCTCGTGG+TGG + chr1.2:80226823-80226842 MS.gene92996:CDS 40.0%
CAAAGGTTATTAGACACTGG+TGG - chr1.2:80227155-80227174 None:intergenic 40.0%
CACGCAAAGAATCTTTGCAA+AGG + chr1.2:80228344-80228363 MS.gene92996:CDS 40.0%
CTAGTGCCATATCAGATTCA+GGG + chr1.2:80228080-80228099 MS.gene92996:CDS 40.0%
CTTTGCAAAGATTCTTTGCG+TGG - chr1.2:80228346-80228365 None:intergenic 40.0%
GACTTCACTGCTAAACAAAG+AGG + chr1.2:80227959-80227978 MS.gene92996:CDS 40.0%
GAGATTCCACGTTAGCAATT+TGG - chr1.2:80228054-80228073 None:intergenic 40.0%
GAGGAGAGAGTTATTCTTGA+TGG + chr1.2:80227995-80228014 MS.gene92996:CDS 40.0%
GATCCAACCTTTGTAAGATG+GGG - chr1.2:80228142-80228161 None:intergenic 40.0%
GTAGATCAACCAGGTATGAT+TGG + chr1.2:80228211-80228230 MS.gene92996:CDS 40.0%
GTGCAAAGAGATGAAATCAG+CGG - chr1.2:80226731-80226750 None:intergenic 40.0%
GTTCACGAAAACACTGGATA+TGG - chr1.2:80227927-80227946 None:intergenic 40.0%
GTTGATCTTGCTGAGAAACT+GGG + chr1.2:80227767-80227786 MS.gene92996:CDS 40.0%
TAGTGCCATATCAGATTCAG+GGG + chr1.2:80228081-80228100 MS.gene92996:CDS 40.0%
TATGTTGGAGTTTCCCTAGT+TGG + chr1.2:80226544-80226563 MS.gene92996:CDS 40.0%
TATTAGACACTGGTGGCAAA+AGG - chr1.2:80227148-80227167 None:intergenic 40.0%
TCAACCAGGTATGATTGGAA+AGG + chr1.2:80228216-80228235 MS.gene92996:CDS 40.0%
TGGACTTGGATGAATTCAAG+TGG - chr1.2:80228034-80228053 None:intergenic 40.0%
TGGGAGAGAAGTAAGTATGT+TGG + chr1.2:80226529-80226548 MS.gene92996:CDS 40.0%
TGTTGATCTTGCTGAGAAAC+TGG + chr1.2:80227766-80227785 MS.gene92996:CDS 40.0%
TTAACACCTGCAAGTCACAA+GGG - chr1.2:80227730-80227749 None:intergenic 40.0%
TTTCAATAGCTACACCTTCC+TGG - chr1.2:80227188-80227207 None:intergenic 40.0%
TTTGTCACATATGCCGTTGT+CGG - chr1.2:80226389-80226408 None:intergenic 40.0%
! CGTGAAGTGTTTGAATCTTC+CGG + chr1.2:80225768-80225787 MS.gene92996:CDS 40.0%
! GTTTGTGTCTTTGTTTCAGG+CGG + chr1.2:80226966-80226985 MS.gene92996:intron 40.0%
! TGTTGAGCTTGTGAGTTTTG+AGG + chr1.2:80226693-80226712 MS.gene92996:CDS 40.0%
! TTGAGCATCTTATTGGTAGC+AGG - chr1.2:80226766-80226785 None:intergenic 40.0%
! TTGGTGATAAATTTGGCGAC+TGG + chr1.2:80227674-80227693 MS.gene92996:intron 40.0%
! TTTTGTTCCTAGTACCTCTG+AGG - chr1.2:80227280-80227299 None:intergenic 40.0%
!! ACACTTGCTGTAATGGGATT+TGG + chr1.2:80226571-80226590 MS.gene92996:CDS 40.0%
!! CACTTGCTGTAATGGGATTT+GGG + chr1.2:80226572-80226591 MS.gene92996:CDS 40.0%
!! CATAACCAACTTGCTGTCTT+TGG - chr1.2:80227022-80227041 None:intergenic 40.0%
!! CTTGTTAGAGCATTGGATTC+TGG + chr1.2:80226865-80226884 MS.gene92996:CDS 40.0%
!! GAAGTTGATGTGAGTTTGGA+AGG + chr1.2:80228166-80228185 MS.gene92996:CDS 40.0%
!! TGGTATTGATAACGTGGATC+TGG + chr1.2:80225824-80225843 MS.gene92996:CDS 40.0%
!! TGGTGTTGGTATTGATAACG+TGG + chr1.2:80225818-80225837 MS.gene92996:CDS 40.0%
!!! TATCCCTCCAATTTTGAAGC+TGG + chr1.2:80227605-80227624 MS.gene92996:intron 40.0%
AACAACCTTGAGTCTTCCAC+CGG - chr1.2:80225790-80225809 None:intergenic 45.0%
AATAGCAGAAGCTGTCGTTG+GGG + chr1.2:80227206-80227225 MS.gene92996:CDS 45.0%
ACCAGGTATGATTGGAAAGG+TGG + chr1.2:80228219-80228238 MS.gene92996:CDS 45.0%
ACGAGTGTCAAGATCATCAG+GGG - chr1.2:80227867-80227886 None:intergenic 45.0%
AGACGAGTGTCAAGATCATC+AGG - chr1.2:80227869-80227888 None:intergenic 45.0%
AGCAAGTGTCTTCCCAACTA+GGG - chr1.2:80226560-80226579 None:intergenic 45.0%
ATCTTGCTGAGAAACTGGGT+AGG + chr1.2:80227771-80227790 MS.gene92996:CDS 45.0%
ATTTGGGAAGGTTGGAACTG+AGG + chr1.2:80226588-80226607 MS.gene92996:CDS 45.0%
CAAAGAGATGAAATCAGCGG+TGG - chr1.2:80226728-80226747 None:intergenic 45.0%
CATGGCTAGAAATGTTGCTC+AGG + chr1.2:80225938-80225957 MS.gene92996:CDS 45.0%
CCAAGTCCAAATTGCTAACG+TGG + chr1.2:80228045-80228064 MS.gene92996:CDS 45.0%
CCACGTTAGCAATTTGGACT+TGG - chr1.2:80228048-80228067 None:intergenic 45.0%
CCAGGTATGATTGGAAAGGT+GGG + chr1.2:80228220-80228239 MS.gene92996:CDS 45.0%
GAAATAGCAGAAGCTGTCGT+TGG + chr1.2:80227204-80227223 MS.gene92996:CDS 45.0%
GACGAGTGTCAAGATCATCA+GGG - chr1.2:80227868-80227887 None:intergenic 45.0%
GAGTTTGGAGGAGAGAGAAA+GGG - chr1.2:80225499-80225518 None:intergenic 45.0%
GATGCTCTTATCGTTCGTAG+TGG + chr1.2:80225732-80225751 MS.gene92996:CDS 45.0%
GCTAGTGCCATATCAGATTC+AGG + chr1.2:80228079-80228098 MS.gene92996:CDS 45.0%
GCTGATGCTTCTATCAAAGC+TGG + chr1.2:80225960-80225979 MS.gene92996:CDS 45.0%
GTAACTTACCTGAGCTTCCA+TGG - chr1.2:80227085-80227104 None:intergenic 45.0%
GTTAACACCTGCAAGTCACA+AGG - chr1.2:80227731-80227750 None:intergenic 45.0%
GTTACTGCAACACCTCATCT+TGG + chr1.2:80227051-80227070 MS.gene92996:CDS 45.0%
TACTGCAGTCAATGCACCAA+TGG + chr1.2:80227251-80227270 MS.gene92996:CDS 45.0%
TCAACTGCTATGTGTCCAAC+TGG + chr1.2:80227492-80227511 MS.gene92996:intron 45.0%
TTAGACACTGGTGGCAAAAG+GGG - chr1.2:80227146-80227165 None:intergenic 45.0%
! AGTACCTCTGAGGAAACCAT+TGG - chr1.2:80227270-80227289 None:intergenic 45.0%
! GAAGTGTTTGAATCTTCCGG+TGG + chr1.2:80225771-80225790 MS.gene92996:CDS 45.0%
! GGATGCACTTGTTAGAGCAT+TGG + chr1.2:80226858-80226877 MS.gene92996:CDS 45.0%
! GTAATGGGATTTGGGAAGGT+TGG + chr1.2:80226580-80226599 MS.gene92996:CDS 45.0%
! TGCTGTAATGGGATTTGGGA+AGG + chr1.2:80226576-80226595 MS.gene92996:CDS 45.0%
! TTATTGGTAGCAGGCGTAAG+AGG - chr1.2:80226757-80226776 None:intergenic 45.0%
! TTCATTCCCTTGTGACTTGC+AGG + chr1.2:80227721-80227740 MS.gene92996:intron 45.0%
!! AACCAACTTGCTGTCTTTGG+TGG - chr1.2:80227019-80227038 None:intergenic 45.0%
!! ACCAACTTGCTGTCTTTGGT+GGG - chr1.2:80227018-80227037 None:intergenic 45.0%
!! ATGGTTTCCTCAGAGGTACT+AGG + chr1.2:80227270-80227289 MS.gene92996:intron 45.0%
!! GGATTCTGGAATTGTAGCTC+AGG + chr1.2:80226879-80226898 MS.gene92996:CDS 45.0%
!! GGGAAGACACTTGCTGTAAT+GGG + chr1.2:80226565-80226584 MS.gene92996:CDS 45.0%
!! TAGTGGACTAGGTGACGTAA+TGG + chr1.2:80226141-80226160 MS.gene92996:intron 45.0%
!! TCAGCTTCATGAGTGTTGGA+AGG + chr1.2:80228272-80228291 MS.gene92996:CDS 45.0%
!! TGGGAAGACACTTGCTGTAA+TGG + chr1.2:80226564-80226583 MS.gene92996:CDS 45.0%
!!! TGAGCTTGTGAGTTTTGAGG+AGG + chr1.2:80226696-80226715 MS.gene92996:CDS 45.0%
!! ACTTAAATTAATAATTAATT+GGG + chr1.2:80226929-80226948 MS.gene92996:intron 5.0%
!! TACTTAAATTAATAATTAAT+TGG + chr1.2:80226928-80226947 MS.gene92996:intron 5.0%
AAGATGGTGAAGAGAGACGG+AGG - chr1.2:80225476-80225495 None:intergenic 50.0%
AAGCAGGCTGTGATGGCAAT+TGG + chr1.2:80228307-80228326 MS.gene92996:CDS 50.0%
AAGTGACTTACGCTTCCGCT+AGG + chr1.2:80227840-80227859 MS.gene92996:CDS 50.0%
ACCCACCAAAGACAGCAAGT+TGG + chr1.2:80227014-80227033 MS.gene92996:CDS 50.0%
AGATGGTGAAGAGAGACGGA+GGG - chr1.2:80225475-80225494 None:intergenic 50.0%
AGGTTGGAACTGAGGTTGCT+AGG + chr1.2:80226596-80226615 MS.gene92996:CDS 50.0%
AGTGACTTACGCTTCCGCTA+GGG + chr1.2:80227841-80227860 MS.gene92996:CDS 50.0%
ATAGCATGAGCACGATCAGC+AGG - chr1.2:80226670-80226689 None:intergenic 50.0%
ATCAGATTCAGGGGAGGTCA+CGG + chr1.2:80228090-80228109 MS.gene92996:CDS 50.0%
ATCTTCCGGTGGAAGACTCA+AGG + chr1.2:80225782-80225801 MS.gene92996:CDS 50.0%
CAAGCAACCATGTTCGGTAG+CGG - chr1.2:80225853-80225872 None:intergenic 50.0%
CAGCAAGTGTCTTCCCAACT+AGG - chr1.2:80226561-80226580 None:intergenic 50.0%
CCCACCTTTCCAATCATACC+TGG - chr1.2:80228223-80228242 None:intergenic 50.0%
CTCCTACAATCTCACTCCTG+AGG + chr1.2:80225683-80225702 MS.gene92996:CDS 50.0%
CTCCTCAGGAGTGAGATTGT+AGG - chr1.2:80225688-80225707 None:intergenic 50.0%
GACCTCCCCTGAATCTGATA+TGG - chr1.2:80228089-80228108 None:intergenic 50.0%
GAGGAGAGAGAAAGGGAAGA+TGG - chr1.2:80225492-80225511 None:intergenic 50.0%
GCTGATCGTGCTCATGCTAT+TGG + chr1.2:80226670-80226689 MS.gene92996:CDS 50.0%
GGAGTTTGGAGGAGAGAGAA+AGG - chr1.2:80225500-80225519 None:intergenic 50.0%
GGGAAGATGGTGAAGAGAGA+CGG - chr1.2:80225479-80225498 None:intergenic 50.0%
GGTGGAAGACTCAAGGTTGT+TGG + chr1.2:80225789-80225808 MS.gene92996:CDS 50.0%
GGTTTGGGAAGTAGCGTTAG+CGG - chr1.2:80225454-80225473 None:intergenic 50.0%
GTCCCCCATCTTACAAAGGT+TGG + chr1.2:80228136-80228155 MS.gene92996:CDS 50.0%
TACCTGAGCTTCCATGGTAC+TGG - chr1.2:80227079-80227098 None:intergenic 50.0%
TGAAGAGAGACGGAGGGTTT+GGG - chr1.2:80225469-80225488 None:intergenic 50.0%
TGAGTGTCTGACACCGACAA+CGG + chr1.2:80226373-80226392 MS.gene92996:intron 50.0%
TGCACCAATGGTTTCCTCAG+AGG + chr1.2:80227263-80227282 MS.gene92996:CDS 50.0%
TGCAGGCAAGTAGATCAACC+AGG + chr1.2:80228202-80228221 MS.gene92996:CDS 50.0%
TGCCATATCAGATTCAGGGG+AGG + chr1.2:80228084-80228103 MS.gene92996:CDS 50.0%
TGCTGAGAAACTGGGTAGGT+TGG + chr1.2:80227775-80227794 MS.gene92996:CDS 50.0%
TGGTGTCCCCCATCTTACAA+AGG + chr1.2:80228132-80228151 MS.gene92996:CDS 50.0%
! ATCTTGGTGCAAAGCTCCTC+AGG - chr1.2:80225702-80225721 None:intergenic 50.0%
! CTCAAGGTTGTTGGTAGAGC+TGG + chr1.2:80225798-80225817 MS.gene92996:CDS 50.0%
! GGCGGCTCTTGATGTTTTCA+CGG + chr1.2:80226984-80227003 MS.gene92996:intron 50.0%
! GGCTCTTGATGTTTTCACGG+TGG + chr1.2:80226987-80227006 MS.gene92996:CDS 50.0%
! GTTGTTGGTAGAGCTGGTGT+TGG + chr1.2:80225804-80225823 MS.gene92996:CDS 50.0%
! TGCTAAGGGGCTTGGTATGA+AGG + chr1.2:80226621-80226640 MS.gene92996:CDS 50.0%
!! AACTTGCTGTCTTTGGTGGG+TGG - chr1.2:80227015-80227034 None:intergenic 50.0%
!! ATGGTACTGGCACCAAGATG+AGG - chr1.2:80227066-80227085 None:intergenic 50.0%
!! CTGTCGTTGGGGCTTTGAAA+GGG + chr1.2:80227217-80227236 MS.gene92996:CDS 50.0%
!! GGAAAGGTGGGAAGCATCTT+GGG + chr1.2:80228232-80228251 MS.gene92996:CDS 50.0%
!! TCATCTTGGTGCCAGTACCA+TGG + chr1.2:80227065-80227084 MS.gene92996:CDS 50.0%
!! TGGAAAGGTGGGAAGCATCT+TGG + chr1.2:80228231-80228250 MS.gene92996:CDS 50.0%
!! TGTCGTTGGGGCTTTGAAAG+GGG + chr1.2:80227218-80227237 MS.gene92996:CDS 50.0%
AAGAGGAGACGAAGACGACG+AGG - chr1.2:80225575-80225594 None:intergenic 55.0%
AAGATCATCAGGGGCCCTAG+CGG - chr1.2:80227858-80227877 None:intergenic 55.0%
AAGGATTGCTCCACGCAAGC+AGG + chr1.2:80228291-80228310 MS.gene92996:CDS 55.0%
AGACGAAGACGACGAGGGAA+CGG - chr1.2:80225569-80225588 None:intergenic 55.0%
AGAGGAGACGAAGACGACGA+GGG - chr1.2:80225574-80225593 None:intergenic 55.0%
AGGTTGCTAGGCGTGCTAAG+GGG + chr1.2:80226608-80226627 MS.gene92996:CDS 55.0%
CAACTGGTAGCAGGAGGAAG+CGG + chr1.2:80227803-80227822 MS.gene92996:CDS 55.0%
CGCTACCGAACATGGTTGCT+TGG + chr1.2:80225851-80225870 MS.gene92996:CDS 55.0%
GAGGTTGCTAGGCGTGCTAA+GGG + chr1.2:80226607-80226626 MS.gene92996:CDS 55.0%
GTCCTCGTCGCTGAAAAGCT+CGG + chr1.2:80225615-80225634 MS.gene92996:CDS 55.0%
GTGAAGAGAGACGGAGGGTT+TGG - chr1.2:80225470-80225489 None:intergenic 55.0%
TGAGGTTGCTAGGCGTGCTA+AGG + chr1.2:80226606-80226625 MS.gene92996:CDS 55.0%
TGCCAGTACCATGGAAGCTC+AGG + chr1.2:80227074-80227093 MS.gene92996:CDS 55.0%
TTGGCTGTCCAACTGGTAGC+AGG + chr1.2:80227794-80227813 MS.gene92996:CDS 55.0%
TTGGGAAGTAGCGTTAGCGG+CGG - chr1.2:80225451-80225470 None:intergenic 55.0%
! GAGCTTTTCAGCGACGAGGA+CGG - chr1.2:80225616-80225635 None:intergenic 55.0%
! GCACGATCAGCAGGAGCATA+AGG - chr1.2:80226661-80226680 None:intergenic 55.0%
! GGGTTTAGCGTCGAGAGAAG+AGG - chr1.2:80225592-80225611 None:intergenic 55.0%
! TCGTGGTGGAGTCATTGACG+AGG + chr1.2:80226837-80226856 MS.gene92996:CDS 55.0%
! TTTTCAGCGACGAGGACGGT+GGG - chr1.2:80225612-80225631 None:intergenic 55.0%
!! GCTGTCGTTGGGGCTTTGAA+AGG + chr1.2:80227216-80227235 MS.gene92996:CDS 55.0%
!! TCGGTGTCAGACACTCACAC+AGG - chr1.2:80226370-80226389 None:intergenic 55.0%
ACTGTTGCCGCCGCTGAACA+CGG + chr1.2:80225897-80225916 MS.gene92996:CDS 60.0%
AGATTCAGGGGAGGTCACGG+TGG + chr1.2:80228093-80228112 MS.gene92996:CDS 60.0%
AGCGGCGGCAACAGTGTTAG+CGG - chr1.2:80225892-80225911 None:intergenic 60.0%
CGCTTCCTCCTGCTACCAGT+TGG - chr1.2:80227805-80227824 None:intergenic 60.0%
GATCGCGCTCTTAGCTGGCA+TGG + chr1.2:80225920-80225939 MS.gene92996:CDS 60.0%
GCGGCAACAGTGTTAGCGGT+GGG - chr1.2:80225888-80225907 None:intergenic 60.0%
GCTGAAAAGCTCGGCGAAGC+TGG + chr1.2:80225624-80225643 MS.gene92996:CDS 60.0%
GCTGTCCAACTGGTAGCAGG+AGG + chr1.2:80227797-80227816 MS.gene92996:CDS 60.0%
GGAGGAGAGAGGGAGTTTGG+AGG - chr1.2:80225511-80225530 None:intergenic 60.0%
GTGGAGGGTCGTGTGAAGGA+TGG + chr1.2:80228112-80228131 MS.gene92996:CDS 60.0%
TCCACGCAAGCAGGCTGTGA+TGG + chr1.2:80228300-80228319 MS.gene92996:CDS 60.0%
! CTTTTCAGCGACGAGGACGG+TGG - chr1.2:80225613-80225632 None:intergenic 60.0%
! GCAACCATGTTCGGTAGCGG+CGG - chr1.2:80225850-80225869 None:intergenic 60.0%
! GGGTAGGTTGGCTGTCCAAC+TGG + chr1.2:80227787-80227806 MS.gene92996:CDS 60.0%
AAGACGACGAGGGAACGGCG+GGG - chr1.2:80225564-80225583 None:intergenic 65.0%
ACGGAGAAGGCGGAGGAGAG+AGG - chr1.2:80225522-80225541 None:intergenic 65.0%
ACGGAGGGAGACGGAGAAGG+CGG - chr1.2:80225532-80225551 None:intergenic 65.0%
CACGGGATCGCGCTCTTAGC+TGG + chr1.2:80225915-80225934 MS.gene92996:CDS 65.0%
CACGGTGGAGGGTCGTGTGA+AGG + chr1.2:80228108-80228127 MS.gene92996:CDS 65.0%
CGAAGACGACGAGGGAACGG+CGG - chr1.2:80225566-80225585 None:intergenic 65.0%
CGGAGAAGGCGGAGGAGAGA+GGG - chr1.2:80225521-80225540 None:intergenic 65.0%
CTGTTGCCGCCGCTGAACAC+GGG + chr1.2:80225898-80225917 MS.gene92996:CDS 65.0%
GAAGACGACGAGGGAACGGC+GGG - chr1.2:80225565-80225584 None:intergenic 65.0%
GAGCGCGATCCCGTGTTCAG+CGG - chr1.2:80225910-80225929 None:intergenic 65.0%
GCCATCACAGCCTGCTTGCG+TGG - chr1.2:80228304-80228323 None:intergenic 65.0%
GCTAGGCGTGCTAAGGGGCT+TGG + chr1.2:80226613-80226632 MS.gene92996:CDS 65.0%
GGAAGTAGCGTTAGCGGCGG+CGG - chr1.2:80225448-80225467 None:intergenic 65.0%
GGCGGAGGAGAGAGGGAGTT+TGG - chr1.2:80225514-80225533 None:intergenic 65.0%
GGCGGCAACAGTGTTAGCGG+TGG - chr1.2:80225889-80225908 None:intergenic 65.0%
GTTGTGGGGACGGAGGGAGA+CGG - chr1.2:80225541-80225560 None:intergenic 65.0%
TCAGGGGAGGTCACGGTGGA+GGG + chr1.2:80228097-80228116 MS.gene92996:CDS 65.0%
TTCAGGGGAGGTCACGGTGG+AGG + chr1.2:80228096-80228115 MS.gene92996:CDS 65.0%
! CGCCGAGCTTTTCAGCGACG+AGG - chr1.2:80225620-80225639 None:intergenic 65.0%
AACGGCGGGGGTTGTGGGGA+CGG - chr1.2:80225551-80225570 None:intergenic 70.0%
AGACGACGAGGGAACGGCGG+GGG - chr1.2:80225563-80225582 None:intergenic 70.0%
AGGGAACGGCGGGGGTTGTG+GGG - chr1.2:80225555-80225574 None:intergenic 70.0%
CGCGATCCCGTGTTCAGCGG+CGG - chr1.2:80225907-80225926 None:intergenic 70.0%
CTGGCCGCCGCTACCGAACA+TGG + chr1.2:80225843-80225862 MS.gene92996:CDS 70.0%
GAGGGAACGGCGGGGGTTGT+GGG - chr1.2:80225556-80225575 None:intergenic 70.0%
GAGGGAGACGGAGAAGGCGG+AGG - chr1.2:80225529-80225548 None:intergenic 70.0%
GGGACGGAGGGAGACGGAGA+AGG - chr1.2:80225535-80225554 None:intergenic 70.0%
CGAGGGAACGGCGGGGGTTG+TGG - chr1.2:80225557-80225576 None:intergenic 75.0%
GCGGGGGTTGTGGGGACGGA+GGG - chr1.2:80225547-80225566 None:intergenic 75.0%
! GGCGGGGGTTGTGGGGACGG+AGG - chr1.2:80225548-80225567 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 80225441 80228414 80225441 ID=MS.gene92996
chr1.2 mRNA 80225441 80228414 80225441 ID=MS.gene92996.t1;Parent=MS.gene92996
chr1.2 exon 80225441 80225981 80225441 ID=MS.gene92996.t1.exon1;Parent=MS.gene92996.t1
chr1.2 CDS 80225441 80225981 80225441 ID=cds.MS.gene92996.t1;Parent=MS.gene92996.t1
chr1.2 exon 80226524 80226900 80226524 ID=MS.gene92996.t1.exon2;Parent=MS.gene92996.t1
chr1.2 CDS 80226524 80226900 80226524 ID=cds.MS.gene92996.t1;Parent=MS.gene92996.t1
chr1.2 exon 80226985 80227095 80226985 ID=MS.gene92996.t1.exon3;Parent=MS.gene92996.t1
chr1.2 CDS 80226985 80227095 80226985 ID=cds.MS.gene92996.t1;Parent=MS.gene92996.t1
chr1.2 exon 80227189 80227284 80227189 ID=MS.gene92996.t1.exon4;Parent=MS.gene92996.t1
chr1.2 CDS 80227189 80227284 80227189 ID=cds.MS.gene92996.t1;Parent=MS.gene92996.t1
chr1.2 exon 80227743 80228414 80227743 ID=MS.gene92996.t1.exon5;Parent=MS.gene92996.t1
chr1.2 CDS 80227743 80228414 80227743 ID=cds.MS.gene92996.t1;Parent=MS.gene92996.t1
Gene Sequence

>MS.gene92996

ATGGCCGCCGCCGCTAACGCTACTTCCCAAACCCTCCGTCTCTCTTCACCATCTTCCCTTTCTCTCTCCTCCAAACTCCCTCTCTCCTCCGCCTTCTCCGTCTCCCTCCGTCCCCACAACCCCCGCCGTTCCCTCGTCGTCTTCGTCTCCTCTTCTCTCGACGCTAAACCCACCGTCCTCGTCGCTGAAAAGCTCGGCGAAGCTGGTCTCACTCTTCTCAAAGACTTCGCTAACGTCGACTGCTCCTACAATCTCACTCCTGAGGAGCTTTGCACCAAGATCTCTCTTTGTGATGCTCTTATCGTTCGTAGTGGTACCAAAGTCTCACGTGAAGTGTTTGAATCTTCCGGTGGAAGACTCAAGGTTGTTGGTAGAGCTGGTGTTGGTATTGATAACGTGGATCTGGCCGCCGCTACCGAACATGGTTGCTTGGTTGTTAATGCTCCCACCGCTAACACTGTTGCCGCCGCTGAACACGGGATCGCGCTCTTAGCTGGCATGGCTAGAAATGTTGCTCAGGCTGATGCTTCTATCAAAGCTGGTAAAGTTCTTTTTTCATAGCAGCATTTTATCGAACACTTTGTTTGTTAGATTTTTTTTTAGATCCTGATGATTTTGTTGTGTTTTTTAGTGTTAGTTATTTGGGTACTTTTTGTTTTGTTTCAATTCACATGCTTTTATTCTTTATATTGTTAACTACTAGTGGACTAGGTGACGTAATGGTAAAATTTTCTGTGTAAAGGAGGAAACTTCTTGTCCTCAAATATACGTGGTTAACTCTTTTTGTATAAATGTTGAGATCTAATGATATATATGGGGGTAAAGTTTTGATTTTTTTTCTTCTTCCGTATAATCTGTAATGGGTGTTAATGTTGTGGCTTCTGTCACTTGCTTTGCAACATTGTCACTTCTGATCAAAGGCGTGTCCTGTGTGAGTGTCTGACACCGACAACGGCATATGTGACAAAACCGAATTATGTCATTTTCTCAAATTATTATCGTTGTCAAAGCGTTTGTGTTGTGCTGCATAAGTTATTAGTTGATATGGTTAATTGAATTAGTGTTGATACATGGTTAATACAGGGAAATGGGAGAGAAGTAAGTATGTTGGAGTTTCCCTAGTTGGGAAGACACTTGCTGTAATGGGATTTGGGAAGGTTGGAACTGAGGTTGCTAGGCGTGCTAAGGGGCTTGGTATGAAGGTTATTGCTCATGATCCTTATGCTCCTGCTGATCGTGCTCATGCTATTGGTGTTGAGCTTGTGAGTTTTGAGGAGGCTATTGCCACCGCTGATTTCATCTCTTTGCACATGCCTCTTACGCCTGCTACCAATAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTAGAATTGTTAATGTTGCTCGTGGTGGAGTCATTGACGAGGATGCACTTGTTAGAGCATTGGATTCTGGAATTGTAGCTCAGGTTTGAAGCACTGAGCCACTTTTAGTTTACTTAAATTAATAATTAATTGGGTTGAAATACTGATAGTTTGTGTCTTTGTTTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCACCAAAGACAGCAAGTTGGTTATGCATGAGCTAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGTAAGTTACCTAAGCAATTGCCTATGACTATGAGTTATAGCTTTGTTCCCCTTTTGCCACCAGTGTCTAATAACCTTTGAAAATGATGACCAGGAAGGTGTAGCTATTGAAATAGCAGAAGCTGTCGTTGGGGCTTTGAAAGGGGAGCTTGCTTCTACTGCAGTCAATGCACCAATGGTTTCCTCAGAGGTACTAGGAACAAAACTATCGTATTTATCCTTTTATTTCATGATAAAAATAACCTTGCCTCTTGATATTGTTACTGCATCTCTTCCTTATCTATATCCAAGCAATATGGTTTCCAAAATCATTCTAAATTCTTTGACTTATTGTGTAACCATATTCATATATTGAAAACGATTTTGGAACAAAATGGTTGTCTTAAATTGTTAAATTTCAACTGCTATGTGTCCAACTGGTTAAAATAAATACTACTCAAGTGAAGGCAAAAGTTTGATTTGAGAAATCTAATACATGGATCTTAATGAGTTTTTTTTATTGCTCGGCTTTATCCCTCCAATTTTGAAGCTGGCTTTATCTAGAGCTTATCCTAATACAAAATGATTCATGGATTGGAGTTGGTGATAAATTTGGCGACTGGAATGACTCAAAGTTTAACATATGTTTCATTCCCTTGTGACTTGCAGGTGTTAACAGAACTAAAACCATTTGTTGATCTTGCTGAGAAACTGGGTAGGTTGGCTGTCCAACTGGTAGCAGGAGGAAGCGGTGTAAAGACAGTGAAAGTGACTTACGCTTCCGCTAGGGCCCCTGATGATCTTGACACTCGTCTTCTTCGTGCTATGATAACAAAGGGTCTGATTGAGCCCATATCCAGTGTTTTCGTGAACTTAGTTAATGCTGACTTCACTGCTAAACAAAGAGGGCTAAGAATTACTGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAATCCACTTGAATTCATCCAAGTCCAAATTGCTAACGTGGAATCTCGATTTGCTAGTGCCATATCAGATTCAGGGGAGGTCACGGTGGAGGGTCGTGTGAAGGATGGTGTCCCCCATCTTACAAAGGTTGGATCTTTTGAAGTTGATGTGAGTTTGGAAGGTAGCATTATACTTTGCAGGCAAGTAGATCAACCAGGTATGATTGGAAAGGTGGGAAGCATCTTGGGTGAAGAGAATGTGAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGCAAGCAGGCTGTGATGGCAATTGGAGTTGATGAGCAACCACGCAAAGAATCTTTGCAAAGGATTGGAGACATTCCTGCTGTTGAAGAATTTGTTTTCCTCAAGTTGTAA
Protein sequence

>MS.gene92996.t1

MAAAANATSQTLRLSSPSSLSLSSKLPLSSAFSVSLRPHNPRRSLVVFVSSSLDAKPTVLVAEKLGEAGLTLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAGMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMKVIAHDPYAPADRAHAIGVELVSFEEAIATADFISLHMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPTKDSKLVMHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELASTAVNAPMVSSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEVTVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKESLQRIGDIPAVEEFVFLKL