Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94721.t1 | XP_013449185.1 | 95.8 | 192 | 4 | 1 | 22 | 213 | 190 | 377 | 1.40E-96 | 362.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94721.t1 | Q5W6H5 | 91.3 | 184 | 16 | 0 | 30 | 213 | 193 | 376 | 5.1e-92 | 338.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94721.t1 | A0A072U207 | 95.8 | 192 | 4 | 1 | 22 | 213 | 191 | 378 | 1.0e-96 | 362.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene94721 | 0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene94721 | 0.831396 | 1.71E-55 | -1.69E-46 |
| MS.gene049627 | MS.gene94721 | 0.843138 | 1.68E-58 | -1.69E-46 |
| MS.gene050163 | MS.gene94721 | 0.81701 | 4.12E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene94721 | 0.808886 | 2.48E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene94721 | 0.81224 | 4.68E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene94721 | 0.819292 | 1.25E-52 | -1.69E-46 |
| MS.gene050876 | MS.gene94721 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene05087 | MS.gene94721 | 0.82003 | 8.51E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene94721 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene94721 | 0.806857 | 6.71E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene94721 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene94721 | 0.800357 | 1.50E-48 | -1.69E-46 |
| MS.gene054642 | MS.gene94721 | 0.808368 | 3.20E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene94721 | 0.827498 | 1.51E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene94721 | 0.806982 | 6.31E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene94721 | 0.816629 | 5.01E-52 | -1.69E-46 |
| MS.gene056610 | MS.gene94721 | 0.811905 | 5.54E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene94721 | 0.820643 | 6.15E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene94721 | 0.816614 | 5.05E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene94721 | 0.816658 | 4.94E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene94721 | 0.804367 | 2.23E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene94721 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene94721 | 0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene94721 | 0.839278 | 1.74E-57 | -1.69E-46 |
| MS.gene061171 | MS.gene94721 | 0.801474 | 8.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTCTGCACCTCCGTTAA+AGG | 0.234709 | 7.3:+35807186 | MS.gene94721:CDS |
| TGGGCTGGTCAGGCTTTGTT+TGG | 0.238526 | 7.3:+35807465 | MS.gene94721:CDS |
| TAGTCTCTTCCTGTTGCTTT+TGG | 0.262705 | 7.3:+35808102 | MS.gene94721:intron |
| AAAGACTTGTGGAGCTATTA+AGG | 0.297487 | 7.3:-35808647 | None:intergenic |
| TTCAATTAGGTGGGCTGGTC+AGG | 0.304263 | 7.3:+35807455 | MS.gene94721:intron |
| GGGCTGGTCAGGCTTTGTTT+GGG | 0.314315 | 7.3:+35807466 | MS.gene94721:CDS |
| AGATAGAGCTCTAGGGCTTC+AGG | 0.325348 | 7.3:+35807979 | MS.gene94721:CDS |
| TTTAAAAGAACTACCTTTAA+CGG | 0.353625 | 7.3:-35807199 | None:intergenic |
| GAAATATGATGTTAAATATC+AGG | 0.359336 | 7.3:+35808832 | MS.gene94721:CDS |
| TTGGTTCTGAAACTGCAAAA+TGG | 0.382549 | 7.3:+35808121 | MS.gene94721:CDS |
| TTAAAACAAAATGGATGGAT+TGG | 0.422434 | 7.3:+35807295 | MS.gene94721:CDS |
| AATGACTTCAAAAGTGTTGA+AGG | 0.433510 | 7.3:+35807956 | MS.gene94721:CDS |
| ATACTCCGGCTATGCTGTAT+AGG | 0.453639 | 7.3:-35807521 | None:intergenic |
| GTTGAAGGAGATAGAGCTCT+AGG | 0.461795 | 7.3:+35807971 | MS.gene94721:CDS |
| TATTTAACATCATATTTCAC+AGG | 0.468965 | 7.3:-35808827 | None:intergenic |
| CAGAATATATATACGACAGC+AGG | 0.471101 | 7.3:-35807171 | None:intergenic |
| GTTTCAGAACCAAAAGCAAC+AGG | 0.478326 | 7.3:-35808111 | None:intergenic |
| GACTCTGTGGCTGTTGATGA+TGG | 0.487702 | 7.3:+35806729 | MS.gene94721:CDS |
| TGGATTGGAAACTTTGCCCT+TGG | 0.488058 | 7.3:+35807310 | MS.gene94721:CDS |
| ATGGTTACAGGATATCTACT+TGG | 0.495779 | 7.3:+35808589 | MS.gene94721:intron |
| TCTAGTTAAAACAAAATGGA+TGG | 0.499910 | 7.3:+35807290 | MS.gene94721:intron |
| AGTAAAGCTAATGCGTAATA+CGG | 0.507815 | 7.3:-35808622 | None:intergenic |
| TTTGTTTGGGACTCTTTCAC+CGG | 0.508337 | 7.3:+35807479 | MS.gene94721:CDS |
| CAAGTTACATTAGTTTGCCA+TGG | 0.527841 | 7.3:+35807335 | MS.gene94721:CDS |
| TGGTTACAGGATATCTACTT+GGG | 0.533392 | 7.3:+35808590 | MS.gene94721:intron |
| ACAGGATATCTACTTGGGGC+TGG | 0.545863 | 7.3:+35808595 | MS.gene94721:intron |
| CTATAATAGCATTGACTCTG+TGG | 0.570823 | 7.3:+35806716 | MS.gene94721:intron |
| AAAAGAACTACCTTTAACGG+AGG | 0.573983 | 7.3:-35807196 | None:intergenic |
| AACTAATGTAACTTGCTCCA+AGG | 0.574854 | 7.3:-35807327 | None:intergenic |
| ATTACACAATTATCTGTCGC+TGG | 0.577211 | 7.3:+35808165 | MS.gene94721:CDS |
| TTGAAGGAGATAGAGCTCTA+GGG | 0.578632 | 7.3:+35807972 | MS.gene94721:CDS |
| ACTAATGTAACTTGCTCCAA+GGG | 0.583686 | 7.3:-35807326 | None:intergenic |
| ACACTCCTATACAGCATAGC+CGG | 0.592211 | 7.3:+35807516 | MS.gene94721:CDS |
| AGTGTGAGAACAATAATGTC+CGG | 0.593955 | 7.3:-35807498 | None:intergenic |
| GCAGGGATCCACCCAATGCA+AGG | 0.617051 | 7.3:-35807153 | None:intergenic |
| ATTTAACATCATATTTCACA+GGG | 0.625360 | 7.3:-35808826 | None:intergenic |
| ACTGCAAAATGGATATGTGT+TGG | 0.658074 | 7.3:+35808132 | MS.gene94721:CDS |
| GGTTACAGGATATCTACTTG+GGG | 0.668031 | 7.3:+35808591 | MS.gene94721:intron |
| AGAATATATATACGACAGCA+GGG | 0.669194 | 7.3:-35807170 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATAATTAAGAAT+AGG | - | chr7.3:35806151-35806170 | None:intergenic | 10.0% |
| !! | GTAAAAAAAAAATGTTCATA+TGG | - | chr7.3:35808296-35808315 | None:intergenic | 15.0% |
| !!! | TTTTTCTAGTTAAAACAAAA+TGG | + | chr7.3:35807286-35807305 | MS.gene94721:intron | 15.0% |
| !! | AAAAACAACTTATGTCTTAT+AGG | - | chr7.3:35807716-35807735 | None:intergenic | 20.0% |
| !! | AAAAGTAAATGAACATAACA+AGG | - | chr7.3:35807414-35807433 | None:intergenic | 20.0% |
| !! | AATTTATTAGCGTATATTTG+AGG | - | chr7.3:35808203-35808222 | None:intergenic | 20.0% |
| !! | AGCGTTAATTAATGTTAATA+CGG | - | chr7.3:35808326-35808345 | None:intergenic | 20.0% |
| !! | ATTTAACATCATATTTCACA+GGG | - | chr7.3:35808829-35808848 | None:intergenic | 20.0% |
| !! | ATTTATTAGCGTATATTTGA+GGG | - | chr7.3:35808202-35808221 | None:intergenic | 20.0% |
| !! | GAAATATGATGTTAAATATC+AGG | + | chr7.3:35808832-35808851 | MS.gene94721:CDS | 20.0% |
| !! | TATTTAACATCATATTTCAC+AGG | - | chr7.3:35808830-35808849 | None:intergenic | 20.0% |
| !! | TTTAAAAGAACTACCTTTAA+CGG | - | chr7.3:35807202-35807221 | None:intergenic | 20.0% |
| !!! | AACAATGTTATTTGAACTTA+GGG | - | chr7.3:35807893-35807912 | None:intergenic | 20.0% |
| !!! | ATTTATCAAGTTTGAAGTAT+TGG | + | chr7.3:35806231-35806250 | MS.gene94721:intron | 20.0% |
| !!! | CATTTTGGTGATTTTATATA+TGG | + | chr7.3:35808570-35808589 | MS.gene94721:intron | 20.0% |
| ! | ATAAAAACTTGAGACTGTTT+GGG | - | chr7.3:35807817-35807836 | None:intergenic | 25.0% |
| ! | ATAAATGTTGTGATTGAAAC+AGG | + | chr7.3:35808446-35808465 | MS.gene94721:intron | 25.0% |
| ! | CAATTTCATCAAATGTGTTA+CGG | - | chr7.3:35806596-35806615 | None:intergenic | 25.0% |
| ! | CTAAGCTACTTATCTAAATA+CGG | - | chr7.3:35807598-35807617 | None:intergenic | 25.0% |
| ! | CTTATTTCCATAAGCTAATT+AGG | - | chr7.3:35807748-35807767 | None:intergenic | 25.0% |
| ! | GCAATGTAAAACAGAAAATT+AGG | - | chr7.3:35807916-35807935 | None:intergenic | 25.0% |
| ! | TAATCAAACAAGATTGTCAA+AGG | - | chr7.3:35808084-35808103 | None:intergenic | 25.0% |
| ! | TCTAGTTAAAACAAAATGGA+TGG | + | chr7.3:35807290-35807309 | MS.gene94721:intron | 25.0% |
| ! | TTAAAACAAAATGGATGGAT+TGG | + | chr7.3:35807295-35807314 | MS.gene94721:CDS | 25.0% |
| !! | AAAGAAATTCGTGACTTTTA+CGG | + | chr7.3:35806295-35806314 | MS.gene94721:intron | 25.0% |
| !! | AATGCAAGGTAAAAAAGTAT+AGG | - | chr7.3:35807142-35807161 | None:intergenic | 25.0% |
| !! | ATAAATTTTCTTATGTTGCC+AGG | + | chr7.3:35808949-35808968 | MS.gene94721:intron | 25.0% |
| !! | ATGCAAGGTAAAAAAGTATA+GGG | - | chr7.3:35807141-35807160 | None:intergenic | 25.0% |
| !! | GAACAATGTTATTTGAACTT+AGG | - | chr7.3:35807894-35807913 | None:intergenic | 25.0% |
| !! | GTGATTTTATATATGGTTAC+AGG | + | chr7.3:35808577-35808596 | MS.gene94721:intron | 25.0% |
| !! | TATTCTTCATGACATTTTGT+TGG | + | chr7.3:35807550-35807569 | MS.gene94721:intron | 25.0% |
| !!! | AATTTTGACATGAACAAATC+TGG | - | chr7.3:35806787-35806806 | None:intergenic | 25.0% |
| !!! | ACTTTTGAAGTCATTTACAA+TGG | - | chr7.3:35807951-35807970 | None:intergenic | 25.0% |
| !!! | ATACTTTTTTACCTTGCATT+GGG | + | chr7.3:35807142-35807161 | MS.gene94721:CDS | 25.0% |
| !!! | CATTGATTTCGTTTTCAATT+AGG | + | chr7.3:35807442-35807461 | MS.gene94721:intron | 25.0% |
| !!! | TATACTTTTTTACCTTGCAT+TGG | + | chr7.3:35807141-35807160 | MS.gene94721:CDS | 25.0% |
| AAAGATGTTGATCAATGATG+AGG | + | chr7.3:35807017-35807036 | MS.gene94721:intron | 30.0% | |
| AAAGTTCAGATTAGAGTTAC+TGG | - | chr7.3:35808029-35808048 | None:intergenic | 30.0% | |
| AAGCGATAAGAGATGTTATT+GGG | - | chr7.3:35806488-35806507 | None:intergenic | 30.0% | |
| AATTGTCCATGTGAAAAAAC+AGG | - | chr7.3:35806958-35806977 | None:intergenic | 30.0% | |
| ACATTAATTAACGCTGCAAA+AGG | + | chr7.3:35808331-35808350 | MS.gene94721:intron | 30.0% | |
| ACTTATTTGCACTTATCTAC+TGG | - | chr7.3:35807841-35807860 | None:intergenic | 30.0% | |
| AGAATATATATACGACAGCA+GGG | - | chr7.3:35807173-35807192 | None:intergenic | 30.0% | |
| AGACAATTCAAATGTTCAGA+TGG | + | chr7.3:35806528-35806547 | MS.gene94721:intron | 30.0% | |
| AGTAAAGCTAATGCGTAATA+CGG | - | chr7.3:35808625-35808644 | None:intergenic | 30.0% | |
| ATCTGAACATTTGAATTGTC+TGG | - | chr7.3:35806529-35806548 | None:intergenic | 30.0% | |
| CATAAAAACTTGAGACTGTT+TGG | - | chr7.3:35807818-35807837 | None:intergenic | 30.0% | |
| GAAGAATATAGTACATACTC+CGG | - | chr7.3:35807538-35807557 | None:intergenic | 30.0% | |
| GACATTTAATAATCCGTGTT+TGG | + | chr7.3:35806894-35806913 | MS.gene94721:intron | 30.0% | |
| GCTTATATGATAAGCTTGTA+TGG | - | chr7.3:35807641-35807660 | None:intergenic | 30.0% | |
| TAAACATCTTTGTCATCCTT+AGG | - | chr7.3:35806813-35806832 | None:intergenic | 30.0% | |
| TAAGCGATAAGAGATGTTAT+TGG | - | chr7.3:35806489-35806508 | None:intergenic | 30.0% | |
| TTAATGTTAATACGGTGACT+TGG | - | chr7.3:35808318-35808337 | None:intergenic | 30.0% | |
| TTGATATACGATTGACTGAT+AGG | + | chr7.3:35806368-35806387 | MS.gene94721:intron | 30.0% | |
| TTTACCTGAAAAAAGACTTG+TGG | - | chr7.3:35808661-35808680 | None:intergenic | 30.0% | |
| ! | ACTCAAATTTTCTCCTTTAC+AGG | + | chr7.3:35807102-35807121 | MS.gene94721:intron | 30.0% |
| ! | ACTTTATCTTTTGCCTTTGA+TGG | + | chr7.3:35807242-35807261 | MS.gene94721:intron | 30.0% |
| ! | GATTTCGTTTTCAATTAGGT+GGG | + | chr7.3:35807446-35807465 | MS.gene94721:intron | 30.0% |
| ! | GTGGTCTACATAGAAATTTT+TGG | + | chr7.3:35807069-35807088 | MS.gene94721:intron | 30.0% |
| ! | GTTCAGTCTTTGAAAAATGT+TGG | + | chr7.3:35806916-35806935 | MS.gene94721:intron | 30.0% |
| ! | TAGAACTGTCTTGATCATTT+TGG | + | chr7.3:35808555-35808574 | MS.gene94721:intron | 30.0% |
| ! | TAGCTATCCTAATTAGCTTA+TGG | + | chr7.3:35807738-35807757 | MS.gene94721:intron | 30.0% |
| ! | TGATTTCGTTTTCAATTAGG+TGG | + | chr7.3:35807445-35807464 | MS.gene94721:intron | 30.0% |
| ! | TGTTACGGATTAAACCTTTA+CGG | - | chr7.3:35806581-35806600 | None:intergenic | 30.0% |
| ! | TTCTGTTTTACATTGCAGTT+GGG | + | chr7.3:35807920-35807939 | MS.gene94721:intron | 30.0% |
| ! | TTTCTGTTTTACATTGCAGT+TGG | + | chr7.3:35807919-35807938 | MS.gene94721:intron | 30.0% |
| !! | AATGACTTCAAAAGTGTTGA+AGG | + | chr7.3:35807956-35807975 | MS.gene94721:CDS | 30.0% |
| !! | ATTAGACGAAGAAGTATTAG+AGG | - | chr7.3:35808871-35808890 | None:intergenic | 30.0% |
| !! | CATAGAAATTTTTGGAAGCT+TGG | + | chr7.3:35807077-35807096 | MS.gene94721:intron | 30.0% |
| !! | TAGACTGCTTTTATGTATTG+TGG | + | chr7.3:35808745-35808764 | MS.gene94721:intron | 30.0% |
| !! | TAGATTACCTTGGTTTTTGT+GGG | + | chr7.3:35806334-35806353 | MS.gene94721:intron | 30.0% |
| AAAAGAACTACCTTTAACGG+AGG | - | chr7.3:35807199-35807218 | None:intergenic | 35.0% | |
| AAAGACTTGTGGAGCTATTA+AGG | - | chr7.3:35808650-35808669 | None:intergenic | 35.0% | |
| AACAGACCAAGAACCAAAAA+TGG | - | chr7.3:35808986-35809005 | None:intergenic | 35.0% | |
| AATATCGAGGGTTACTTCAA+GGG | + | chr7.3:35806987-35807006 | MS.gene94721:intron | 35.0% | |
| AATTGTATGTCGCAATATCG+AGG | + | chr7.3:35806974-35806993 | MS.gene94721:intron | 35.0% | |
| ACTGCAAAATGGATATGTGT+TGG | + | chr7.3:35808132-35808151 | MS.gene94721:CDS | 35.0% | |
| AGCGATAAGAGATGTTATTG+GGG | - | chr7.3:35806487-35806506 | None:intergenic | 35.0% | |
| AGTGTGAGAACAATAATGTC+CGG | - | chr7.3:35807501-35807520 | None:intergenic | 35.0% | |
| ATATATCAGTGCGACAATGT+TGG | + | chr7.3:35808902-35808921 | MS.gene94721:intron | 35.0% | |
| ATGGTTACAGGATATCTACT+TGG | + | chr7.3:35808589-35808608 | MS.gene94721:intron | 35.0% | |
| ATGTTGATCAATGATGAGGA+CGG | + | chr7.3:35807021-35807040 | MS.gene94721:intron | 35.0% | |
| ATTACACAATTATCTGTCGC+TGG | + | chr7.3:35808165-35808184 | MS.gene94721:CDS | 35.0% | |
| ATTGTATGTCGCAATATCGA+GGG | + | chr7.3:35806975-35806994 | MS.gene94721:intron | 35.0% | |
| ATTTAATGACGCAAGAGCTA+AGG | + | chr7.3:35808379-35808398 | MS.gene94721:intron | 35.0% | |
| CAACGACTTATCAAAAGAGA+AGG | - | chr7.3:35807368-35807387 | None:intergenic | 35.0% | |
| CAAGGCAAAAGATGAAAAGA+AGG | - | chr7.3:35808783-35808802 | None:intergenic | 35.0% | |
| CACAAAAACCAAGGTAATCT+AGG | - | chr7.3:35806335-35806354 | None:intergenic | 35.0% | |
| CACAGAGTCAATGCTATTAT+AGG | - | chr7.3:35806718-35806737 | None:intergenic | 35.0% | |
| CAGAATATATATACGACAGC+AGG | - | chr7.3:35807174-35807193 | None:intergenic | 35.0% | |
| CTTAGTCAAATGACCATCAA+AGG | - | chr7.3:35807258-35807277 | None:intergenic | 35.0% | |
| GAGAAAATACTTGAACTGCA+AGG | - | chr7.3:35808801-35808820 | None:intergenic | 35.0% | |
| GTCTGATTTATGCAGATTGA+AGG | - | chr7.3:35806877-35806896 | None:intergenic | 35.0% | |
| TACTGATGTGACATCAAATG+TGG | + | chr7.3:35807050-35807069 | MS.gene94721:intron | 35.0% | |
| TCATGTCAAAATTGAGCCTA+AGG | + | chr7.3:35806794-35806813 | MS.gene94721:intron | 35.0% | |
| TGGTTACAGGATATCTACTT+GGG | + | chr7.3:35808590-35808609 | MS.gene94721:intron | 35.0% | |
| TGTCAAGAAGGAAATGCATA+GGG | - | chr7.3:35806428-35806447 | None:intergenic | 35.0% | |
| TTCAAAGACTGAACCAAACA+CGG | - | chr7.3:35806910-35806929 | None:intergenic | 35.0% | |
| TTGACATGAACAAATCTGGT+AGG | - | chr7.3:35806783-35806802 | None:intergenic | 35.0% | |
| TTGATGTCACATCAGTATCT+TGG | - | chr7.3:35807047-35807066 | None:intergenic | 35.0% | |
| TTGTCAAGAAGGAAATGCAT+AGG | - | chr7.3:35806429-35806448 | None:intergenic | 35.0% | |
| TTTAATGACGCAAGAGCTAA+GGG | + | chr7.3:35808380-35808399 | MS.gene94721:intron | 35.0% | |
| ! | AAATTTTCTCCTTTACAGGC+AGG | + | chr7.3:35807106-35807125 | MS.gene94721:intron | 35.0% |
| ! | AACAAATCTGGTAGGTTTTG+TGG | - | chr7.3:35806775-35806794 | None:intergenic | 35.0% |
| ! | AATTTTCTCCTTTACAGGCA+GGG | + | chr7.3:35807107-35807126 | MS.gene94721:intron | 35.0% |
| ! | GCAGTTCAAGTATTTTCTCA+AGG | + | chr7.3:35808802-35808821 | MS.gene94721:intron | 35.0% |
| !! | AACTAATGTAACTTGCTCCA+AGG | - | chr7.3:35807330-35807349 | None:intergenic | 35.0% |
| !! | ACTAATGTAACTTGCTCCAA+GGG | - | chr7.3:35807329-35807348 | None:intergenic | 35.0% |
| !! | CAAGTTACATTAGTTTGCCA+TGG | + | chr7.3:35807335-35807354 | MS.gene94721:CDS | 35.0% |
| !! | CTAGATTACCTTGGTTTTTG+TGG | + | chr7.3:35806333-35806352 | MS.gene94721:intron | 35.0% |
| !! | CTATAATAGCATTGACTCTG+TGG | + | chr7.3:35806716-35806735 | MS.gene94721:intron | 35.0% |
| !! | TTGGTTCTGAAACTGCAAAA+TGG | + | chr7.3:35808121-35808140 | MS.gene94721:CDS | 35.0% |
| !!! | ATTTTTGGTTCTTGGTCTGT+TGG | + | chr7.3:35808985-35809004 | MS.gene94721:CDS | 35.0% |
| AATCTTTCGTGAGTCCGTAA+AGG | + | chr7.3:35806564-35806583 | MS.gene94721:intron | 40.0% | |
| AATGCATAGGGGGTCAAAAA+CGG | - | chr7.3:35806416-35806435 | None:intergenic | 40.0% | |
| ACATCTCTTATCGCTTAGTG+TGG | + | chr7.3:35806492-35806511 | MS.gene94721:intron | 40.0% | |
| ACTTAGGGTCTGTTTGACAT+AGG | - | chr7.3:35807878-35807897 | None:intergenic | 40.0% | |
| ATATTCTGCACCTCCGTTAA+AGG | + | chr7.3:35807186-35807205 | MS.gene94721:CDS | 40.0% | |
| CAATATCGAGGGTTACTTCA+AGG | + | chr7.3:35806986-35807005 | MS.gene94721:intron | 40.0% | |
| CGATAAGAGATGTTATTGGG+GGG | - | chr7.3:35806485-35806504 | None:intergenic | 40.0% | |
| CTTAGGGTCTGTTTGACATA+GGG | - | chr7.3:35807877-35807896 | None:intergenic | 40.0% | |
| GCAGATTCATCTTGTCAAGA+AGG | - | chr7.3:35806440-35806459 | None:intergenic | 40.0% | |
| GCGATAAGAGATGTTATTGG+GGG | - | chr7.3:35806486-35806505 | None:intergenic | 40.0% | |
| GGTTACAGGATATCTACTTG+GGG | + | chr7.3:35808591-35808610 | MS.gene94721:intron | 40.0% | |
| GTCAAGAAGGAAATGCATAG+GGG | - | chr7.3:35806427-35806446 | None:intergenic | 40.0% | |
| GTGAAAAAACAGGAGACAGT+AGG | - | chr7.3:35806948-35806967 | None:intergenic | 40.0% | |
| GTTTCAGAACCAAAAGCAAC+AGG | - | chr7.3:35808114-35808133 | None:intergenic | 40.0% | |
| TCAAGAAGGAAATGCATAGG+GGG | - | chr7.3:35806426-35806445 | None:intergenic | 40.0% | |
| TGTTTGACATAGGGTCTGTT+TGG | - | chr7.3:35807868-35807887 | None:intergenic | 40.0% | |
| TTGAAGGAGATAGAGCTCTA+GGG | + | chr7.3:35807972-35807991 | MS.gene94721:CDS | 40.0% | |
| TTTCTTTCCATCCCTTTGTG+AGG | - | chr7.3:35806282-35806301 | None:intergenic | 40.0% | |
| ! | CATGCTTTGACTGTTTTGCA+TGG | + | chr7.3:35808243-35808262 | MS.gene94721:intron | 40.0% |
| ! | CATTTTTCCTCACAAAGGGA+TGG | + | chr7.3:35806272-35806291 | MS.gene94721:intron | 40.0% |
| ! | GACTTTTACGGAATCAGTCA+TGG | + | chr7.3:35806307-35806326 | MS.gene94721:intron | 40.0% |
| ! | GTATTGGTCGACAGAGTAAA+CGG | + | chr7.3:35806247-35806266 | MS.gene94721:intron | 40.0% |
| ! | TTTGTTTGGGACTCTTTCAC+CGG | + | chr7.3:35807479-35807498 | MS.gene94721:CDS | 40.0% |
| !! | GGAGCATTTTTCCTCACAAA+GGG | + | chr7.3:35806268-35806287 | MS.gene94721:intron | 40.0% |
| !! | TACATTAGTTTGCCATGGTG+TGG | + | chr7.3:35807340-35807359 | MS.gene94721:intron | 40.0% |
| !!! | AGCTCCACAAGTCTTTTTTC+AGG | + | chr7.3:35808654-35808673 | MS.gene94721:CDS | 40.0% |
| !!! | CTGTCTCCTGTTTTTTCACA+TGG | + | chr7.3:35806949-35806968 | MS.gene94721:intron | 40.0% |
| !!! | CTTTTTTACCTTGCATTGGG+TGG | + | chr7.3:35807145-35807164 | MS.gene94721:CDS | 40.0% |
| !!! | GCACAACCATTTTTGGTTCT+TGG | + | chr7.3:35808977-35808996 | MS.gene94721:CDS | 40.0% |
| !!! | TAGTCTCTTCCTGTTGCTTT+TGG | + | chr7.3:35808102-35808121 | MS.gene94721:intron | 40.0% |
| AAAATGGTTGTGCACTAGCC+TGG | - | chr7.3:35808970-35808989 | None:intergenic | 45.0% | |
| AAATCATGCCCTGCCTGTAA+AGG | - | chr7.3:35807118-35807137 | None:intergenic | 45.0% | |
| ACACTCCTATACAGCATAGC+CGG | + | chr7.3:35807516-35807535 | MS.gene94721:CDS | 45.0% | |
| ATACTCCGGCTATGCTGTAT+AGG | - | chr7.3:35807524-35807543 | None:intergenic | 45.0% | |
| ATGCATAGGGGGTCAAAAAC+GGG | - | chr7.3:35806415-35806434 | None:intergenic | 45.0% | |
| CTCATGCAGCAATACATGTG+TGG | + | chr7.3:35806656-35806675 | MS.gene94721:intron | 45.0% | |
| CTCTTATCGCTTAGTGTGGA+TGG | + | chr7.3:35806496-35806515 | MS.gene94721:intron | 45.0% | |
| GCATGGTATTACAACAACGC+TGG | + | chr7.3:35808260-35808279 | MS.gene94721:intron | 45.0% | |
| GTTGAAGGAGATAGAGCTCT+AGG | + | chr7.3:35807971-35807990 | MS.gene94721:CDS | 45.0% | |
| TCATGGTGCCTAGATTACCT+TGG | + | chr7.3:35806324-35806343 | MS.gene94721:intron | 45.0% | |
| TGTTTGTCGCAAATGTCTGC+AGG | + | chr7.3:35806614-35806633 | MS.gene94721:intron | 45.0% | |
| ! | GGCTAGTGCACAACCATTTT+TGG | + | chr7.3:35808970-35808989 | MS.gene94721:intron | 45.0% |
| ! | TCGTTTTCAATTAGGTGGGC+TGG | + | chr7.3:35807450-35807469 | MS.gene94721:intron | 45.0% |
| ! | TGGATTGGAAACTTTGCCCT+TGG | + | chr7.3:35807310-35807329 | MS.gene94721:CDS | 45.0% |
| !! | AAAGAGAAGGTACCACACCA+TGG | - | chr7.3:35807355-35807374 | None:intergenic | 45.0% |
| !! | ACCTTGGTTTTTGTGGGTGA+CGG | + | chr7.3:35806340-35806359 | MS.gene94721:intron | 45.0% |
| !! | CGGAGCATTTTTCCTCACAA+AGG | + | chr7.3:35806267-35806286 | MS.gene94721:intron | 45.0% |
| !!! | TTAGCACCTGTTTTGGTGGT+TGG | - | chr7.3:35806690-35806709 | None:intergenic | 45.0% |
| ACAGGATATCTACTTGGGGC+TGG | + | chr7.3:35808595-35808614 | MS.gene94721:intron | 50.0% | |
| ATGTCTGCAGGATGTACCAG+AGG | + | chr7.3:35806626-35806645 | MS.gene94721:intron | 50.0% | |
| CCACCAAAACAGGTGCTAAG+AGG | + | chr7.3:35806691-35806710 | MS.gene94721:intron | 50.0% | |
| GACACACCAACCACCAAAAC+AGG | + | chr7.3:35806681-35806700 | MS.gene94721:intron | 50.0% | |
| TCGAGGGTTACTTCAAGGGA+TGG | + | chr7.3:35806991-35807010 | MS.gene94721:intron | 50.0% | |
| TGCATAGGGGGTCAAAAACG+GGG | - | chr7.3:35806414-35806433 | None:intergenic | 50.0% | |
| ! | GACTCTGTGGCTGTTGATGA+TGG | + | chr7.3:35806729-35806748 | MS.gene94721:CDS | 50.0% |
| ! | GGACCTCTTAGCACCTGTTT+TGG | - | chr7.3:35806697-35806716 | None:intergenic | 50.0% |
| !! | AGATAGAGCTCTAGGGCTTC+AGG | + | chr7.3:35807979-35807998 | MS.gene94721:CDS | 50.0% |
| !! | CCTCTTAGCACCTGTTTTGG+TGG | - | chr7.3:35806694-35806713 | None:intergenic | 50.0% |
| !! | CCTTGGTTTTTGTGGGTGAC+GGG | + | chr7.3:35806341-35806360 | MS.gene94721:intron | 50.0% |
| !! | GCTGTTGATGATGGTGAAGC+TGG | + | chr7.3:35806738-35806757 | MS.gene94721:intron | 50.0% |
| !! | TTCAATTAGGTGGGCTGGTC+AGG | + | chr7.3:35807455-35807474 | MS.gene94721:intron | 50.0% |
| AGGGGGTCAAAAACGGGGTA+GGG | - | chr7.3:35806409-35806428 | None:intergenic | 55.0% | |
| CCCGTCACCCACAAAAACCA+AGG | - | chr7.3:35806344-35806363 | None:intergenic | 55.0% | |
| CTGCATGAGTCCTCAACCTC+TGG | - | chr7.3:35806645-35806664 | None:intergenic | 55.0% | |
| GCAGGATGTACCAGAGGTTG+AGG | + | chr7.3:35806632-35806651 | MS.gene94721:intron | 55.0% | |
| TAGGGGGTCAAAAACGGGGT+AGG | - | chr7.3:35806410-35806429 | None:intergenic | 55.0% | |
| !! | GGGCTGGTCAGGCTTTGTTT+GGG | + | chr7.3:35807466-35807485 | MS.gene94721:CDS | 55.0% |
| !! | TGATGATGGTGAAGCTGGCC+AGG | + | chr7.3:35806743-35806762 | MS.gene94721:intron | 55.0% |
| !! | TGGGCTGGTCAGGCTTTGTT+TGG | + | chr7.3:35807465-35807484 | MS.gene94721:CDS | 55.0% |
| GCAGGGATCCACCCAATGCA+AGG | - | chr7.3:35807156-35807175 | None:intergenic | 60.0% | |
| GGGGGTCAAAAACGGGGTAG+GGG | - | chr7.3:35806408-35806427 | None:intergenic | 60.0% | |
| !! | TAGGTTTTGTGGCCGACGCC+TGG | - | chr7.3:35806764-35806783 | None:intergenic | 60.0% |
| TGGTGAAGCTGGCCAGGCGT+CGG | + | chr7.3:35806749-35806768 | MS.gene94721:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 35806066 | 35809033 | 35806066 | ID=MS.gene94721 |
| chr7.3 | mRNA | 35806066 | 35809033 | 35806066 | ID=MS.gene94721.t1;Parent=MS.gene94721 |
| chr7.3 | exon | 35806066 | 35806128 | 35806066 | ID=MS.gene94721.t1.exon1;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35806066 | 35806128 | 35806066 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35806725 | 35806750 | 35806725 | ID=MS.gene94721.t1.exon2;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35806725 | 35806750 | 35806725 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35807124 | 35807207 | 35807124 | ID=MS.gene94721.t1.exon3;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35807124 | 35807207 | 35807124 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35807295 | 35807356 | 35807295 | ID=MS.gene94721.t1.exon4;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35807295 | 35807356 | 35807295 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35807464 | 35807539 | 35807464 | ID=MS.gene94721.t1.exon5;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35807464 | 35807539 | 35807464 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35807938 | 35808000 | 35807938 | ID=MS.gene94721.t1.exon6;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35807938 | 35808000 | 35807938 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35808105 | 35808186 | 35808105 | ID=MS.gene94721.t1.exon7;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35808105 | 35808186 | 35808105 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35808599 | 35808675 | 35808599 | ID=MS.gene94721.t1.exon8;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35808599 | 35808675 | 35808599 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35808806 | 35808853 | 35808806 | ID=MS.gene94721.t1.exon9;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35808806 | 35808853 | 35808806 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| chr7.3 | exon | 35808971 | 35809033 | 35808971 | ID=MS.gene94721.t1.exon10;Parent=MS.gene94721.t1 |
| chr7.3 | CDS | 35808971 | 35809033 | 35808971 | ID=cds.MS.gene94721.t1;Parent=MS.gene94721.t1 |
| Gene Sequence |
| Protein sequence |
