Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94861.t1 | XP_013452335.1 | 86.7 | 308 | 37 | 1 | 1 | 308 | 51 | 354 | 4.10E-142 | 514.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94861.t1 | Q8LG95 | 67.9 | 243 | 75 | 2 | 1 | 240 | 1 | 243 | 2.2e-88 | 327.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94861.t1 | A0A072UBE9 | 86.7 | 308 | 37 | 1 | 1 | 308 | 51 | 354 | 3.0e-142 | 514.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene94861 | 0.840029 | 1.11E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene94861 | 0.825234 | 5.24E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene94861 | 0.83656 | 8.71E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene94861 | 0.817394 | 3.37E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene94861 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene94861 | 0.824228 | 9.04E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene94861 | 0.822891 | 1.86E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene94861 | 0.839125 | 1.91E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene94861 | 0.817237 | 3.66E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene94861 | 0.859504 | 3.95E-63 | -1.69E-46 |
| MS.gene053559 | MS.gene94861 | 0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene94861 | 0.852535 | 4.33E-61 | -1.69E-46 |
| MS.gene054349 | MS.gene94861 | 0.816748 | 4.71E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene94861 | 0.803795 | 2.94E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene94861 | 0.836276 | 1.03E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene94861 | 0.824302 | 8.69E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene94861 | 0.819523 | 1.11E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene94861 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene94861 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene94861 | 0.818007 | 2.45E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene94861 | 0.816466 | 5.45E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene94861 | 0.818932 | 1.51E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene94861 | 0.838275 | 3.17E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene94861 | 0.817626 | 2.99E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene94861 | 0.801473 | 8.86E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene94861 | 0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene94861 | 0.826542 | 2.56E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene94861 | 0.825827 | 3.79E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene94861 | 0.849939 | 2.34E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene94861 | 0.821958 | 3.06E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene94861 | 0.827946 | 1.18E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene94861 | 0.827617 | 1.42E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene94861 | 0.835921 | 1.27E-56 | -1.69E-46 |
| MS.gene060495 | MS.gene94861 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene94861 | 0.862297 | 5.60E-64 | -1.69E-46 |
| MS.gene061051 | MS.gene94861 | -0.827456 | 1.55E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94861.t1 | MTR_6g053090 | 93.831 | 308 | 15 | 1 | 1 | 308 | 51 | 354 | 0.0 | 570 |
| MS.gene94861.t1 | MTR_3g024400 | 46.269 | 201 | 107 | 1 | 41 | 241 | 75 | 274 | 7.57e-56 | 182 |
| MS.gene94861.t1 | MTR_5g012120 | 39.744 | 156 | 93 | 1 | 66 | 220 | 4 | 159 | 3.51e-36 | 129 |
| MS.gene94861.t1 | MTR_5g012120 | 37.952 | 166 | 100 | 2 | 58 | 220 | 71 | 236 | 8.40e-36 | 130 |
| MS.gene94861.t1 | MTR_3g024400 | 45.455 | 132 | 71 | 1 | 110 | 241 | 96 | 226 | 8.71e-33 | 121 |
| MS.gene94861.t1 | MTR_6g052450 | 71.429 | 70 | 13 | 1 | 1 | 70 | 1 | 63 | 6.45e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94861.t1 | AT4G21190 | 67.901 | 243 | 75 | 2 | 1 | 240 | 1 | 243 | 4.82e-117 | 339 |
| MS.gene94861.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 58 | 253 | 1.91e-59 | 191 |
| MS.gene94861.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 85 | 280 | 3.51e-59 | 191 |
| MS.gene94861.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 85 | 280 | 3.51e-59 | 191 |
| MS.gene94861.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 85 | 280 | 3.51e-59 | 191 |
| MS.gene94861.t1 | AT1G04590 | 38.462 | 182 | 111 | 1 | 40 | 220 | 131 | 312 | 5.25e-37 | 136 |
| MS.gene94861.t1 | AT1G04590 | 38.378 | 185 | 110 | 2 | 40 | 220 | 131 | 315 | 2.00e-35 | 132 |
Find 58 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGATTCATCTGAGTTTA+TGG | 0.086698 | 6.1:+29485718 | MS.gene94861:CDS |
| ACGTATCTATCGACTTTATT+AGG | 0.199277 | 6.1:-29485560 | None:intergenic |
| TCTCGTTATACTTCTAAATT+TGG | 0.208592 | 6.1:-29485743 | None:intergenic |
| TCCTCTCTTAAGCCTGAATT+TGG | 0.231390 | 6.1:-29485605 | None:intergenic |
| TCCTATAATTACAGTGAAAA+AGG | 0.241597 | 6.1:+29483772 | MS.gene94861:CDS |
| AATGTCAAAGAAGAAGTTTA+TGG | 0.291907 | 6.1:+29483713 | MS.gene94861:CDS |
| GAACAGGATGCCGATTTAAT+AGG | 0.309673 | 6.1:+29485674 | MS.gene94861:CDS |
| GATAATGTTCAACCAAATTC+AGG | 0.310706 | 6.1:+29485593 | MS.gene94861:CDS |
| AAGGAAAGCGTGTAAGAATC+AGG | 0.347993 | 6.1:+29485525 | MS.gene94861:CDS |
| TGAAACTATAGGTAACAAAA+TGG | 0.351629 | 6.1:+29484030 | MS.gene94861:intron |
| GACCAAGATATCCTCGAGTT+TGG | 0.361562 | 6.1:+29482300 | MS.gene94861:CDS |
| GTTAATTTAATTTGTTGGTA+TGG | 0.368966 | 6.1:-29482151 | None:intergenic |
| TTGACGAAGCAGAAGAGCTT+TGG | 0.377250 | 6.1:+29484129 | MS.gene94861:CDS |
| AGAAGAGACTTCAGAGTTAA+CGG | 0.379458 | 6.1:+29485637 | MS.gene94861:CDS |
| GGTTTCCATGCCTATTAAAT+CGG | 0.386492 | 6.1:-29485684 | None:intergenic |
| TATTACAACAATGCTTCGTT+TGG | 0.397670 | 6.1:-29482176 | None:intergenic |
| TGAATCATCAGAAATTTGTT+TGG | 0.403746 | 6.1:-29485705 | None:intergenic |
| TAGTAGTTCTGTTGTCTCAA+TGG | 0.409178 | 6.1:+29485409 | MS.gene94861:CDS |
| TTCCAAACTCGAGGATATCT+TGG | 0.417267 | 6.1:-29482302 | None:intergenic |
| TGGTTGTTAATTTAATTTGT+TGG | 0.422341 | 6.1:-29482156 | None:intergenic |
| CTATATTCCCATTGCGGTGG+TGG | 0.430282 | 6.1:-29485494 | None:intergenic |
| AAAATATCCACCACCGCAAT+GGG | 0.433687 | 6.1:+29485487 | MS.gene94861:CDS |
| CTCTAGAATACGAGAAAGAA+TGG | 0.450096 | 6.1:+29483804 | MS.gene94861:CDS |
| ACTCGAGGATATCTTGGTCT+TGG | 0.456302 | 6.1:-29482296 | None:intergenic |
| CTCTTGATACCTATGTCGCT+TGG | 0.459035 | 6.1:+29483738 | MS.gene94861:CDS |
| AGTTCTGTTGTCTCAATGGT+TGG | 0.480356 | 6.1:+29485413 | MS.gene94861:CDS |
| AATGGTTGGAAATGTCTTCA+AGG | 0.484077 | 6.1:+29485427 | MS.gene94861:CDS |
| CTTCAAGGAGCTAGGTATGA+TGG | 0.487411 | 6.1:+29485442 | MS.gene94861:CDS |
| ATATCTATCTACTGTAAAAG+AGG | 0.491255 | 6.1:+29484209 | MS.gene94861:CDS |
| CTTGCATGATAAGATGTTTG+AGG | 0.498325 | 6.1:+29484232 | MS.gene94861:CDS |
| TCTTGATACCTATGTCGCTT+GGG | 0.501458 | 6.1:+29483739 | MS.gene94861:CDS |
| GGAAGATGAGCAATTCGAAC+AGG | 0.506262 | 6.1:+29485658 | MS.gene94861:CDS |
| AACAAAATGGATGTTAAGCA+AGG | 0.507980 | 6.1:+29484043 | MS.gene94861:CDS |
| CATATAGGTATTTGCCGACA+TGG | 0.508744 | 6.1:+29485367 | MS.gene94861:intron |
| ATTGAGACAACAGAACTACT+AGG | 0.527919 | 6.1:-29485407 | None:intergenic |
| GCTCTTCTGCTTCGTCAACT+CGG | 0.545541 | 6.1:-29484124 | None:intergenic |
| AAGGTATTTGCTGCTGCGAA+AGG | 0.553605 | 6.1:+29482272 | MS.gene94861:intron |
| TTCTAGTTCCCAAGCGACAT+AGG | 0.558781 | 6.1:-29483747 | None:intergenic |
| AATACGAGAAAGAATGGAAG+CGG | 0.559112 | 6.1:+29483810 | MS.gene94861:CDS |
| GGATGCCGATTTAATAGGCA+TGG | 0.559417 | 6.1:+29485679 | MS.gene94861:CDS |
| AAGGGTCAAGGAAAGACAAT+GGG | 0.563191 | 6.1:+29484062 | MS.gene94861:CDS |
| AGAATGGAAGCGGATAATAC+AGG | 0.564642 | 6.1:+29483820 | MS.gene94861:CDS |
| TTATTAGTCTTCCAAACTCG+AGG | 0.571818 | 6.1:-29482311 | None:intergenic |
| ATTACTTAATGCTTTAGCTG+AGG | 0.577341 | 6.1:+29484097 | MS.gene94861:CDS |
| GGAAATGTCTTCAAGGAGCT+AGG | 0.581726 | 6.1:+29485434 | MS.gene94861:CDS |
| ACCAAATTCAGGCTTAAGAG+AGG | 0.584556 | 6.1:+29485604 | MS.gene94861:CDS |
| CGTGTAAGAATCAGGGTGCA+AGG | 0.595586 | 6.1:+29485533 | MS.gene94861:CDS |
| TGGGAATATAGATACATCAA+AGG | 0.602911 | 6.1:+29485506 | MS.gene94861:CDS |
| ATGTATCTATATTCCCATTG+CGG | 0.604796 | 6.1:-29485500 | None:intergenic |
| AGGAAAGCGTGTAAGAATCA+GGG | 0.610217 | 6.1:+29485526 | MS.gene94861:CDS |
| TGGATGTTAAGCAAGGGTCA+AGG | 0.625921 | 6.1:+29484050 | MS.gene94861:CDS |
| AACACTAAGCTCCTCCATGT+CGG | 0.627102 | 6.1:-29485381 | None:intergenic |
| ACAAAATGGATGTTAAGCAA+GGG | 0.632530 | 6.1:+29484044 | MS.gene94861:CDS |
| CAAGGGTCAAGGAAAGACAA+TGG | 0.634494 | 6.1:+29484061 | MS.gene94861:CDS |
| TATCTATATTCCCATTGCGG+TGG | 0.638033 | 6.1:-29485497 | None:intergenic |
| TATGGTTTAGCAATGAGTAG+AGG | 0.656699 | 6.1:-29482133 | None:intergenic |
| AAAGTTATTAATGCAGTACA+CGG | 0.694741 | 6.1:+29484154 | MS.gene94861:CDS |
| ATAGGTATTTGCCGACATGG+AGG | 0.727381 | 6.1:+29485370 | MS.gene94861:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTACTCAAATATA+AGG | - | chr6.1:29484316-29484335 | None:intergenic | 10.0% |
| !!! | TAATTTTCTCAAATTATTAG+CGG | - | chr6.1:29482542-29482561 | None:intergenic | 15.0% |
| !! | ACAAACAAATGTTGTTAATA+TGG | + | chr6.1:29485310-29485329 | MS.gene94861:intron | 20.0% |
| !! | ATGAACATAAAAAAATCACA+AGG | - | chr6.1:29483870-29483889 | None:intergenic | 20.0% |
| !! | ATTTGCATGTTTACTATATT+CGG | - | chr6.1:29484898-29484917 | None:intergenic | 20.0% |
| !! | GGAAGACTAATAAAAAAATT+GGG | + | chr6.1:29482321-29482340 | MS.gene94861:CDS | 20.0% |
| !! | TGGAAGACTAATAAAAAAAT+TGG | + | chr6.1:29482320-29482339 | MS.gene94861:CDS | 20.0% |
| !! | TTGGATAAAAGAAAAGTTAT+TGG | + | chr6.1:29484401-29484420 | MS.gene94861:intron | 20.0% |
| !! | TTGTATATTCAAAGTTCAAA+TGG | + | chr6.1:29484368-29484387 | MS.gene94861:intron | 20.0% |
| !!! | AAATTACTTTCTGAAACTAT+AGG | + | chr6.1:29484019-29484038 | MS.gene94861:intron | 20.0% |
| !!! | CCTTAATTCTATAGTTTTTA+GGG | + | chr6.1:29482207-29482226 | MS.gene94861:intron | 20.0% |
| !!! | GTTAATTTAATTTGTTGGTA+TGG | - | chr6.1:29482154-29482173 | None:intergenic | 20.0% |
| !!! | TCCTTAATTCTATAGTTTTT+AGG | + | chr6.1:29482206-29482225 | MS.gene94861:intron | 20.0% |
| !!! | TGGTTGTTAATTTAATTTGT+TGG | - | chr6.1:29482159-29482178 | None:intergenic | 20.0% |
| !!! | TTTTACTCAATTTCTCATAT+AGG | + | chr6.1:29485352-29485371 | MS.gene94861:intron | 20.0% |
| ! | AAAGTTATTAATGCAGTACA+CGG | + | chr6.1:29484154-29484173 | MS.gene94861:CDS | 25.0% |
| ! | AAAGTTATTGGAGTGAAAAT+AGG | + | chr6.1:29484413-29484432 | MS.gene94861:intron | 25.0% |
| ! | AATGTCAAAGAAGAAGTTTA+TGG | + | chr6.1:29483713-29483732 | MS.gene94861:CDS | 25.0% |
| ! | AATTGAGTAAAATATTGAGC+CGG | - | chr6.1:29485344-29485363 | None:intergenic | 25.0% |
| ! | ACAAATGTTGTTAATATGGA+TGG | + | chr6.1:29485314-29485333 | MS.gene94861:intron | 25.0% |
| ! | ATATCTATCTACTGTAAAAG+AGG | + | chr6.1:29484209-29484228 | MS.gene94861:CDS | 25.0% |
| ! | CCCTAAAAACTATAGAATTA+AGG | - | chr6.1:29482210-29482229 | None:intergenic | 25.0% |
| ! | TAGTATTTAACAATGTCAGA+TGG | + | chr6.1:29483040-29483059 | MS.gene94861:intron | 25.0% |
| ! | TCCTATAATTACAGTGAAAA+AGG | + | chr6.1:29483772-29483791 | MS.gene94861:CDS | 25.0% |
| ! | TGAAACTATAGGTAACAAAA+TGG | + | chr6.1:29484030-29484049 | MS.gene94861:intron | 25.0% |
| ! | TGGGTTAAAGTCATAAAAAT+TGG | + | chr6.1:29483170-29483189 | MS.gene94861:intron | 25.0% |
| ! | TTCAAATGGCAAATATACAT+TGG | + | chr6.1:29484382-29484401 | MS.gene94861:intron | 25.0% |
| ! | TTTCTCTCTTAATACACATA+CGG | + | chr6.1:29485080-29485099 | MS.gene94861:intron | 25.0% |
| !! | ATTTTATCAAAGAATCTACG+TGG | - | chr6.1:29484188-29484207 | None:intergenic | 25.0% |
| !! | TGAATCATCAGAAATTTGTT+TGG | - | chr6.1:29485708-29485727 | None:intergenic | 25.0% |
| !! | TTTTGTTACAGTTGTTAGAT+TGG | - | chr6.1:29484853-29484872 | None:intergenic | 25.0% |
| !!! | AAAAATTGGGACTATTTCTA+AGG | + | chr6.1:29482334-29482353 | MS.gene94861:CDS | 25.0% |
| !!! | ACCTTTTTCACTGTAATTAT+AGG | - | chr6.1:29483776-29483795 | None:intergenic | 25.0% |
| !!! | ATTGAATAATGCCATTTTCT+CGG | - | chr6.1:29482833-29482852 | None:intergenic | 25.0% |
| !!! | GATACATTGACTTCTTTATA+TGG | - | chr6.1:29483077-29483096 | None:intergenic | 25.0% |
| AAAATAAAACACCATGGTGA+CGG | - | chr6.1:29483335-29483354 | None:intergenic | 30.0% | |
| AAAGAAGTCAATGTATCCTT+TGG | + | chr6.1:29483080-29483099 | MS.gene94861:intron | 30.0% | |
| AACAAAATGGATGTTAAGCA+AGG | + | chr6.1:29484043-29484062 | MS.gene94861:CDS | 30.0% | |
| AACCAAAGCATAAACTACTA+AGG | - | chr6.1:29482947-29482966 | None:intergenic | 30.0% | |
| AACCTTAGTAGTTTATGCTT+TGG | + | chr6.1:29482942-29482961 | MS.gene94861:intron | 30.0% | |
| AATTTCAAAAAGCTACCACA+TGG | + | chr6.1:29483458-29483477 | MS.gene94861:intron | 30.0% | |
| ACAAAATGGATGTTAAGCAA+GGG | + | chr6.1:29484044-29484063 | MS.gene94861:CDS | 30.0% | |
| AGTTCATAGACAAATAGTGA+AGG | - | chr6.1:29483125-29483144 | None:intergenic | 30.0% | |
| ATCAAATAGAGTGGTATGAT+AGG | + | chr6.1:29484713-29484732 | MS.gene94861:intron | 30.0% | |
| ATGAAGCATAGATACAAACA+CGG | + | chr6.1:29482475-29482494 | MS.gene94861:intron | 30.0% | |
| ATGTAAGTATTATGTCGTGT+TGG | + | chr6.1:29482851-29482870 | MS.gene94861:intron | 30.0% | |
| ATGTATCTATATTCCCATTG+CGG | - | chr6.1:29485503-29485522 | None:intergenic | 30.0% | |
| ATTACTTAATGCTTTAGCTG+AGG | + | chr6.1:29484097-29484116 | MS.gene94861:CDS | 30.0% | |
| ATTCCTTTGATTAGAAGAGT+CGG | + | chr6.1:29482907-29482926 | MS.gene94861:intron | 30.0% | |
| ATTTCTTGCAGTCAGTTATT+TGG | - | chr6.1:29485227-29485246 | None:intergenic | 30.0% | |
| CTGAATTAAGATACATTACC+GGG | + | chr6.1:29483235-29483254 | MS.gene94861:intron | 30.0% | |
| GAAATAACTACAGTTATGTG+AGG | + | chr6.1:29485242-29485261 | MS.gene94861:intron | 30.0% | |
| GATAATGTTCAACCAAATTC+AGG | + | chr6.1:29485593-29485612 | MS.gene94861:CDS | 30.0% | |
| GATGATTTATGTTCCTTCTT+CGG | + | chr6.1:29483967-29483986 | MS.gene94861:intron | 30.0% | |
| GCTGAATTAAGATACATTAC+CGG | + | chr6.1:29483234-29483253 | MS.gene94861:intron | 30.0% | |
| GTTACGGAAAAGTTACTTAT+TGG | + | chr6.1:29483212-29483231 | MS.gene94861:intron | 30.0% | |
| GTTCATAGACAAATAGTGAA+GGG | - | chr6.1:29483124-29483143 | None:intergenic | 30.0% | |
| GTTTCTTACTAGTTGTGATA+TGG | + | chr6.1:29482964-29482983 | MS.gene94861:intron | 30.0% | |
| TATATGATAGGAGAGAACAA+AGG | + | chr6.1:29484462-29484481 | MS.gene94861:intron | 30.0% | |
| TATTACAACAATGCTTCGTT+TGG | - | chr6.1:29482179-29482198 | None:intergenic | 30.0% | |
| TGATGATTCATCTGAGTTTA+TGG | + | chr6.1:29485718-29485737 | MS.gene94861:CDS | 30.0% | |
| TGGGAATATAGATACATCAA+AGG | + | chr6.1:29485506-29485525 | MS.gene94861:CDS | 30.0% | |
| TGTTAATATGGATGGAATTC+CGG | + | chr6.1:29485322-29485341 | MS.gene94861:intron | 30.0% | |
| TTGAATGTGATCACATTTGT+CGG | + | chr6.1:29482687-29482706 | MS.gene94861:intron | 30.0% | |
| TTTCTTGCAGTCAGTTATTT+GGG | - | chr6.1:29485226-29485245 | None:intergenic | 30.0% | |
| ! | AAAAATCAGCCTAAGGTTTT+CGG | - | chr6.1:29483627-29483646 | None:intergenic | 30.0% |
| ! | AGAACTAACACTTTTATCGA+AGG | - | chr6.1:29482748-29482767 | None:intergenic | 30.0% |
| ! | TATTTTATGGCGGTTCAAAA+TGG | + | chr6.1:29483349-29483368 | MS.gene94861:intron | 30.0% |
| !! | ACGTATCTATCGACTTTATT+AGG | - | chr6.1:29485563-29485582 | None:intergenic | 30.0% |
| !! | TTTCGTTGATAGTTAGGTTA+CGG | + | chr6.1:29483196-29483215 | MS.gene94861:intron | 30.0% |
| !! | TTTGATTAGTAGCTTTAGTG+TGG | + | chr6.1:29485031-29485050 | MS.gene94861:intron | 30.0% |
| !!! | CACCATGGTGTTTTATTTTA+TGG | + | chr6.1:29483336-29483355 | MS.gene94861:intron | 30.0% |
| !!! | CATGGTGTTTTATTTTATGG+CGG | + | chr6.1:29483339-29483358 | MS.gene94861:intron | 30.0% |
| !!! | TGGTAGCTTTTTGAAATTTG+TGG | - | chr6.1:29483456-29483475 | None:intergenic | 30.0% |
| !!! | TGTCTATGAACTAGTCTTTT+GGG | + | chr6.1:29483133-29483152 | MS.gene94861:intron | 30.0% |
| !!! | TTGTCTATGAACTAGTCTTT+TGG | + | chr6.1:29483132-29483151 | MS.gene94861:intron | 30.0% |
| AAGTCAATGTATCCTTTGGT+GGG | + | chr6.1:29483084-29483103 | MS.gene94861:intron | 35.0% | |
| AATACGAGAAAGAATGGAAG+CGG | + | chr6.1:29483810-29483829 | MS.gene94861:CDS | 35.0% | |
| AATGGTTGGAAATGTCTTCA+AGG | + | chr6.1:29485427-29485446 | MS.gene94861:CDS | 35.0% | |
| ACAATCCAGTCCTATATTCT+AGG | - | chr6.1:29485119-29485138 | None:intergenic | 35.0% | |
| AGAAGAGACTTCAGAGTTAA+CGG | + | chr6.1:29485637-29485656 | MS.gene94861:CDS | 35.0% | |
| ATTACCGGGTTGTCAAATAT+CGG | + | chr6.1:29483249-29483268 | MS.gene94861:intron | 35.0% | |
| ATTGAGACAACAGAACTACT+AGG | - | chr6.1:29485410-29485429 | None:intergenic | 35.0% | |
| CAGACTTAATTGAACACCTA+GGG | - | chr6.1:29484934-29484953 | None:intergenic | 35.0% | |
| CCTTCACAAATTTCTCATAC+CGG | - | chr6.1:29483309-29483328 | None:intergenic | 35.0% | |
| CGCCATAAAATAAAACACCA+TGG | - | chr6.1:29483341-29483360 | None:intergenic | 35.0% | |
| CTGTTAGTTATCCGAGAAAA+TGG | + | chr6.1:29482819-29482838 | MS.gene94861:intron | 35.0% | |
| CTTGCATGATAAGATGTTTG+AGG | + | chr6.1:29484232-29484251 | MS.gene94861:CDS | 35.0% | |
| GACTTTATACCGAAAACCTT+AGG | + | chr6.1:29483615-29483634 | MS.gene94861:intron | 35.0% | |
| GGCAAGAAAATCAAATAGAG+TGG | + | chr6.1:29484704-29484723 | MS.gene94861:intron | 35.0% | |
| GGTTTCCATGCCTATTAAAT+CGG | - | chr6.1:29485687-29485706 | None:intergenic | 35.0% | |
| TACTGAAGATTTCCTGGAAA+TGG | + | chr6.1:29484520-29484539 | MS.gene94861:intron | 35.0% | |
| TATGGTTTAGCAATGAGTAG+AGG | - | chr6.1:29482136-29482155 | None:intergenic | 35.0% | |
| TATTTATAGACTCAGCCTAG+CGG | + | chr6.1:29484794-29484813 | MS.gene94861:intron | 35.0% | |
| TCAGACTTAATTGAACACCT+AGG | - | chr6.1:29484935-29484954 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | - | chr6.1:29482536-29482555 | None:intergenic | 35.0% | |
| TGTCATTGGTCCTAGAATAT+AGG | + | chr6.1:29485106-29485125 | MS.gene94861:intron | 35.0% | |
| TTATCGCTGTCTATGAATCA+CGG | - | chr6.1:29482646-29482665 | None:intergenic | 35.0% | |
| ! | AGTGGTATGATAGGATTTTG+AGG | + | chr6.1:29484722-29484741 | MS.gene94861:intron | 35.0% |
| ! | CTTTTCAGTACAGATGTAAG+TGG | + | chr6.1:29484683-29484702 | MS.gene94861:intron | 35.0% |
| ! | TAGTAGTTCTGTTGTCTCAA+TGG | + | chr6.1:29485409-29485428 | MS.gene94861:CDS | 35.0% |
| !! | CTCTAGAATACGAGAAAGAA+TGG | + | chr6.1:29483804-29483823 | MS.gene94861:CDS | 35.0% |
| !! | TTATTAGTCTTCCAAACTCG+AGG | - | chr6.1:29482314-29482333 | None:intergenic | 35.0% |
| !! | TTGGGTTAGACTCTTTTCAT+GGG | + | chr6.1:29483151-29483170 | MS.gene94861:intron | 35.0% |
| !! | TTTGGGTTAGACTCTTTTCA+TGG | + | chr6.1:29483150-29483169 | MS.gene94861:intron | 35.0% |
| !!! | CTCTTAGTGGTTAGTCTTTT+GGG | + | chr6.1:29483556-29483575 | MS.gene94861:intron | 35.0% |
| !!! | GTGGTTGATATTTTGACAAC+CGG | + | chr6.1:29483287-29483306 | MS.gene94861:intron | 35.0% |
| !!! | TGGTGTTTTCGTTGATAGTT+AGG | + | chr6.1:29483190-29483209 | MS.gene94861:intron | 35.0% |
| AAAAATATCCACCACCGCAA+TGG | + | chr6.1:29485486-29485505 | MS.gene94861:CDS | 40.0% | |
| AAAATATCCACCACCGCAAT+GGG | + | chr6.1:29485487-29485506 | MS.gene94861:CDS | 40.0% | |
| AAACGAATATAGCGAATGCG+AGG | - | chr6.1:29482390-29482409 | None:intergenic | 40.0% | |
| AAAGACTAACCACTAAGAGC+CGG | - | chr6.1:29483555-29483574 | None:intergenic | 40.0% | |
| AAGGGTCAAGGAAAGACAAT+GGG | + | chr6.1:29484062-29484081 | MS.gene94861:CDS | 40.0% | |
| AATGCTCTAACATCTTCCCT+AGG | + | chr6.1:29484915-29484934 | MS.gene94861:intron | 40.0% | |
| ACCAAATTCAGGCTTAAGAG+AGG | + | chr6.1:29485604-29485623 | MS.gene94861:CDS | 40.0% | |
| AGAATGGAAGCGGATAATAC+AGG | + | chr6.1:29483820-29483839 | MS.gene94861:CDS | 40.0% | |
| AGTCTGAACTTATCAACCAC+TGG | + | chr6.1:29484948-29484967 | MS.gene94861:intron | 40.0% | |
| AGTTCTGTTGTCTCAATGGT+TGG | + | chr6.1:29485413-29485432 | MS.gene94861:CDS | 40.0% | |
| ATGGAGAGGATAAGGGTTTA+GGG | + | chr6.1:29484995-29485014 | MS.gene94861:intron | 40.0% | |
| CATATAGGTATTTGCCGACA+TGG | + | chr6.1:29485367-29485386 | MS.gene94861:intron | 40.0% | |
| CCAGAAATGCAAATCATCCA+AGG | - | chr6.1:29483650-29483669 | None:intergenic | 40.0% | |
| CCGGTATGAGAAATTTGTGA+AGG | + | chr6.1:29483306-29483325 | MS.gene94861:intron | 40.0% | |
| CGATTACAAATGGCAGAACA+TGG | - | chr6.1:29483393-29483412 | None:intergenic | 40.0% | |
| CTGTCTATGAATCACGGATT+AGG | - | chr6.1:29482640-29482659 | None:intergenic | 40.0% | |
| GAAGTCAATGTATCCTTTGG+TGG | + | chr6.1:29483083-29483102 | MS.gene94861:intron | 40.0% | |
| GAGGATTACTGAAGATTTCC+TGG | + | chr6.1:29484514-29484533 | MS.gene94861:intron | 40.0% | |
| GTCAATGTCACTGTCGTATT+TGG | - | chr6.1:29482439-29482458 | None:intergenic | 40.0% | |
| GTCTGAACTTATCAACCACT+GGG | + | chr6.1:29484949-29484968 | MS.gene94861:intron | 40.0% | |
| TAATCCTCTGAGTATCTGAC+AGG | - | chr6.1:29484502-29484521 | None:intergenic | 40.0% | |
| TATCTATATTCCCATTGCGG+TGG | - | chr6.1:29485500-29485519 | None:intergenic | 40.0% | |
| TCCAAGGAAAAATCAGCCTA+AGG | - | chr6.1:29483634-29483653 | None:intergenic | 40.0% | |
| TCCTCTCTTAAGCCTGAATT+TGG | - | chr6.1:29485608-29485627 | None:intergenic | 40.0% | |
| TTCCAAACTCGAGGATATCT+TGG | - | chr6.1:29482305-29482324 | None:intergenic | 40.0% | |
| TTGGTCCTAGAATATAGGAC+TGG | + | chr6.1:29485111-29485130 | MS.gene94861:intron | 40.0% | |
| TTTATGGCGGTTCAAAATGG+TGG | + | chr6.1:29483352-29483371 | MS.gene94861:intron | 40.0% | |
| ! | AAGGAAAGCGTGTAAGAATC+AGG | + | chr6.1:29485525-29485544 | MS.gene94861:CDS | 40.0% |
| ! | ACAGCGTTGTCGATTACAAA+TGG | - | chr6.1:29483403-29483422 | None:intergenic | 40.0% |
| ! | AGGAAAGCGTGTAAGAATCA+GGG | + | chr6.1:29485526-29485545 | MS.gene94861:CDS | 40.0% |
| ! | CCTTGGATGATTTGCATTTC+TGG | + | chr6.1:29483647-29483666 | MS.gene94861:intron | 40.0% |
| ! | GTATTATGTCGTGTTGGTGT+AGG | + | chr6.1:29482857-29482876 | MS.gene94861:intron | 40.0% |
| ! | TCTTGATACCTATGTCGCTT+GGG | + | chr6.1:29483739-29483758 | MS.gene94861:CDS | 40.0% |
| !! | ACCTTAGGCTGATTTTTCCT+TGG | + | chr6.1:29483630-29483649 | MS.gene94861:intron | 40.0% |
| !! | GAACAGGATGCCGATTTAAT+AGG | + | chr6.1:29485674-29485693 | MS.gene94861:CDS | 40.0% |
| !! | GGATTTTGAGGAATCTGCAA+TGG | + | chr6.1:29484734-29484753 | MS.gene94861:intron | 40.0% |
| !! | TTGGGTTGGACAATCTTCAT+CGG | + | chr6.1:29483574-29483593 | MS.gene94861:intron | 40.0% |
| !!! | GCTCTTAGTGGTTAGTCTTT+TGG | + | chr6.1:29483555-29483574 | MS.gene94861:intron | 40.0% |
| !!! | TAGTGGTTAGTCTTTTGGGT+TGG | + | chr6.1:29483560-29483579 | MS.gene94861:intron | 40.0% |
| AACACTAAGCTCCTCCATGT+CGG | - | chr6.1:29485384-29485403 | None:intergenic | 45.0% | |
| AAGACCTGTCAGATACTCAG+AGG | + | chr6.1:29484495-29484514 | MS.gene94861:intron | 45.0% | |
| ACTCGAGGATATCTTGGTCT+TGG | - | chr6.1:29482299-29482318 | None:intergenic | 45.0% | |
| AGATTTCCTGGAAATGGTGC+AGG | + | chr6.1:29484526-29484545 | MS.gene94861:intron | 45.0% | |
| ATAGGTATTTGCCGACATGG+AGG | + | chr6.1:29485370-29485389 | MS.gene94861:intron | 45.0% | |
| ATGGCCGATATTTGACAACC+CGG | - | chr6.1:29483256-29483275 | None:intergenic | 45.0% | |
| ATTAAGTCACACTCACCGCT+AGG | - | chr6.1:29484812-29484831 | None:intergenic | 45.0% | |
| CAAGGGTCAAGGAAAGACAA+TGG | + | chr6.1:29484061-29484080 | MS.gene94861:CDS | 45.0% | |
| CAATGTTATGAGTTCCACGC+CGG | + | chr6.1:29483533-29483552 | MS.gene94861:intron | 45.0% | |
| CATGGAGAGGATAAGGGTTT+AGG | + | chr6.1:29484994-29485013 | MS.gene94861:intron | 45.0% | |
| CCAAACCATGGAGAGGATAA+GGG | + | chr6.1:29484988-29485007 | MS.gene94861:intron | 45.0% | |
| CTAAACCCTTATCCTCTCCA+TGG | - | chr6.1:29484996-29485015 | None:intergenic | 45.0% | |
| CTCTTGATACCTATGTCGCT+TGG | + | chr6.1:29483738-29483757 | MS.gene94861:CDS | 45.0% | |
| CTCTTTCAACACTGACCATG+TGG | - | chr6.1:29483476-29483495 | None:intergenic | 45.0% | |
| CTTCAAGGAGCTAGGTATGA+TGG | + | chr6.1:29485442-29485461 | MS.gene94861:CDS | 45.0% | |
| CTTCCTCAAGAAAAACCCAG+TGG | - | chr6.1:29484967-29484986 | None:intergenic | 45.0% | |
| GACCAAGATATCCTCGAGTT+TGG | + | chr6.1:29482300-29482319 | MS.gene94861:CDS | 45.0% | |
| GGAAATGTCTTCAAGGAGCT+AGG | + | chr6.1:29485434-29485453 | MS.gene94861:CDS | 45.0% | |
| GGAAGATGAGCAATTCGAAC+AGG | + | chr6.1:29485658-29485677 | MS.gene94861:CDS | 45.0% | |
| GTCTGTATCTGTGTTGTGTC+TGG | - | chr6.1:29482504-29482523 | None:intergenic | 45.0% | |
| TACACATACGGCTCTGTCAT+TGG | + | chr6.1:29485092-29485111 | MS.gene94861:intron | 45.0% | |
| TCCAAACCATGGAGAGGATA+AGG | + | chr6.1:29484987-29485006 | MS.gene94861:intron | 45.0% | |
| TCTTGAGGAAGTCCAAACCA+TGG | + | chr6.1:29484976-29484995 | MS.gene94861:intron | 45.0% | |
| TGGATGTTAAGCAAGGGTCA+AGG | + | chr6.1:29484050-29484069 | MS.gene94861:CDS | 45.0% | |
| TTGACGAAGCAGAAGAGCTT+TGG | + | chr6.1:29484129-29484148 | MS.gene94861:CDS | 45.0% | |
| TTGTCAAATATCGGCCATGC+TGG | + | chr6.1:29483258-29483277 | MS.gene94861:intron | 45.0% | |
| ! | AAGGTATTTGCTGCTGCGAA+AGG | + | chr6.1:29482272-29482291 | MS.gene94861:intron | 45.0% |
| ! | CAACCACTGGGTTTTTCTTG+AGG | + | chr6.1:29484961-29484980 | MS.gene94861:intron | 45.0% |
| !! | CACATTTGTCGGTGTTGTGT+TGG | + | chr6.1:29482698-29482717 | MS.gene94861:intron | 45.0% |
| !! | GCACCGACTCTTCTAATCAA+AGG | - | chr6.1:29482913-29482932 | None:intergenic | 45.0% |
| !! | GGATGCCGATTTAATAGGCA+TGG | + | chr6.1:29485679-29485698 | MS.gene94861:CDS | 45.0% |
| !! | TTCTAGTTCCCAAGCGACAT+AGG | - | chr6.1:29483750-29483769 | None:intergenic | 45.0% |
| !! | TAAATAATTATATATATGAT+AGG | + | chr6.1:29484450-29484469 | MS.gene94861:intron | 5.0% |
| !!! | ATTTTTATGATTTTATTATA+AGG | + | chr6.1:29482253-29482272 | MS.gene94861:intron | 5.0% |
| AGGAAGTCCAAACCATGGAG+AGG | + | chr6.1:29484981-29485000 | MS.gene94861:intron | 50.0% | |
| CCCTTATCCTCTCCATGGTT+TGG | - | chr6.1:29484991-29485010 | None:intergenic | 50.0% | |
| CGTGTAAGAATCAGGGTGCA+AGG | + | chr6.1:29485533-29485552 | MS.gene94861:CDS | 50.0% | |
| CTATATTCCCATTGCGGTGG+TGG | - | chr6.1:29485497-29485516 | None:intergenic | 50.0% | |
| CTCTGATACGACACTGACAC+AGG | - | chr6.1:29482583-29482602 | None:intergenic | 50.0% | |
| GAAATGGTGCAGGATGTGAG+TGG | + | chr6.1:29484536-29484555 | MS.gene94861:intron | 50.0% | |
| GAGAGGATAAGGGTTTAGGG+AGG | + | chr6.1:29484998-29485017 | MS.gene94861:intron | 50.0% | |
| GCTCAGAAGCTATCCGAAGA+AGG | - | chr6.1:29483983-29484002 | None:intergenic | 50.0% | |
| GCTCTTCTGCTTCGTCAACT+CGG | - | chr6.1:29484127-29484146 | None:intergenic | 50.0% | |
| TCACATCCTGCACCATTTCC+AGG | - | chr6.1:29484535-29484554 | None:intergenic | 50.0% | |
| TGAAAGAGTGAAAGCCGTCG+TGG | + | chr6.1:29483488-29483507 | MS.gene94861:intron | 50.0% | |
| TGTATCCTTTGGTGGGACCA+TGG | + | chr6.1:29483091-29483110 | MS.gene94861:intron | 50.0% | |
| ! | TTTAGAGCCGACATCCACGA+CGG | - | chr6.1:29483505-29483524 | None:intergenic | 50.0% |
| !! | GATGTCGGCTCTAAAAGAGG+TGG | + | chr6.1:29483510-29483529 | MS.gene94861:intron | 50.0% |
| !! | GTGGATGTCGGCTCTAAAAG+AGG | + | chr6.1:29483507-29483526 | MS.gene94861:intron | 50.0% |
| ATATCGGCCATGCTGGATCG+CGG | + | chr6.1:29483265-29483284 | MS.gene94861:intron | 55.0% | |
| ATCCTTTGGTGGGACCATGG+CGG | + | chr6.1:29483094-29483113 | MS.gene94861:intron | 55.0% | |
| GATTAGGCGTGTCCTGGAGT+CGG | - | chr6.1:29482624-29482643 | None:intergenic | 55.0% | |
| GCAGGATGTGAGTGGAATGG+AGG | + | chr6.1:29484544-29484563 | MS.gene94861:intron | 55.0% | |
| GGTGCAGGATGTGAGTGGAA+TGG | + | chr6.1:29484541-29484560 | MS.gene94861:intron | 55.0% | |
| GTGAAAGCCGTCGTGGATGT+CGG | + | chr6.1:29483495-29483514 | MS.gene94861:intron | 55.0% | |
| TAGTGAAGGGATGTCCGCCA+TGG | - | chr6.1:29483111-29483130 | None:intergenic | 55.0% | |
| TGTGAAGGATGCCGTCACCA+TGG | + | chr6.1:29483321-29483340 | MS.gene94861:intron | 55.0% | |
| !! | ATCACGGATTAGGCGTGTCC+TGG | - | chr6.1:29482630-29482649 | None:intergenic | 55.0% |
| CTAACCACTAAGAGCCGGCG+TGG | - | chr6.1:29483550-29483569 | None:intergenic | 60.0% | |
| TCAACCACCGCGATCCAGCA+TGG | - | chr6.1:29483275-29483294 | None:intergenic | 60.0% | |
| TCCTGGAGTCGGACACACGT+CGG | - | chr6.1:29482613-29482632 | None:intergenic | 60.0% | |
| !! | AGTTCCACGCCGGCTCTTAG+TGG | + | chr6.1:29483543-29483562 | MS.gene94861:intron | 60.0% |
| ACCGACGTGTGTCCGACTCC+AGG | + | chr6.1:29482609-29482628 | MS.gene94861:intron | 65.0% | |
| GTCCGCCATGGTCCCACCAA+AGG | - | chr6.1:29483099-29483118 | None:intergenic | 65.0% | |
| TCGGCCATGCTGGATCGCGG+TGG | + | chr6.1:29483268-29483287 | MS.gene94861:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 29482112 | 29485760 | 29482112 | ID=MS.gene94861 |
| chr6.1 | mRNA | 29482112 | 29485760 | 29482112 | ID=MS.gene94861.t1;Parent=MS.gene94861 |
| chr6.1 | exon | 29482112 | 29482192 | 29482112 | ID=MS.gene94861.t1.exon1;Parent=MS.gene94861.t1 |
| chr6.1 | CDS | 29482112 | 29482192 | 29482112 | ID=cds.MS.gene94861.t1;Parent=MS.gene94861.t1 |
| chr6.1 | exon | 29482275 | 29482376 | 29482275 | ID=MS.gene94861.t1.exon2;Parent=MS.gene94861.t1 |
| chr6.1 | CDS | 29482275 | 29482376 | 29482275 | ID=cds.MS.gene94861.t1;Parent=MS.gene94861.t1 |
| chr6.1 | exon | 29483698 | 29483841 | 29483698 | ID=MS.gene94861.t1.exon3;Parent=MS.gene94861.t1 |
| chr6.1 | CDS | 29483698 | 29483841 | 29483698 | ID=cds.MS.gene94861.t1;Parent=MS.gene94861.t1 |
| chr6.1 | exon | 29484041 | 29484253 | 29484041 | ID=MS.gene94861.t1.exon4;Parent=MS.gene94861.t1 |
| chr6.1 | CDS | 29484041 | 29484253 | 29484041 | ID=cds.MS.gene94861.t1;Parent=MS.gene94861.t1 |
| chr6.1 | exon | 29485374 | 29485760 | 29485374 | ID=MS.gene94861.t1.exon5;Parent=MS.gene94861.t1 |
| chr6.1 | CDS | 29485374 | 29485760 | 29485374 | ID=cds.MS.gene94861.t1;Parent=MS.gene94861.t1 |
| Gene Sequence |
| Protein sequence |
