AlfalfaGEDB | MS.gene96146

M. sativa cultivar XinJiangDaYe / MS.gene96146

KEGG: K03444
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96146.t1	XP_003609563.1	68.2	66	17	2	18	83	374	435	9.20E-10	72.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96146.t1	Q8LBI9	84.2	38	6	0	20	57	368	405	1.1e-08	60.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96146.t1	G7JJ10	68.2	66	17	2	18	83	374	435	6.7e-10	72.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049272	MS.gene96146	0.874491	6.48E-68	-1.69E-46
MS.gene050156	MS.gene96146	0.823988	1.03E-53	-1.69E-46
MS.gene050355	MS.gene96146	0.800584	1.35E-48	-1.69E-46
MS.gene050442	MS.gene96146	0.824204	9.16E-54	-1.69E-46
MS.gene050719	MS.gene96146	0.812958	3.26E-51	-1.69E-46
MS.gene050721	MS.gene96146	0.810644	1.04E-50	-1.69E-46
MS.gene050844	MS.gene96146	0.814841	1.25E-51	-1.69E-46
MS.gene052042	MS.gene96146	0.803062	4.17E-49	-1.69E-46
MS.gene052896	MS.gene96146	0.822418	2.39E-53	-1.69E-46
MS.gene053221	MS.gene96146	0.800738	1.25E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96146.t1	MTR_4g118610	68.182	66	17	2	18	83	374	435	1.23e-18	79.0
MS.gene96146.t1	MTR_4g118610	90.000	40	4	0	18	57	374	413	4.05e-18	77.4
MS.gene96146.t1	MTR_2g020710	51.515	66	28	2	18	83	371	432	3.04e-12	60.8
MS.gene96146.t1	MTR_2g020710	57.447	47	20	0	18	64	371	417	5.42e-12	60.1
MS.gene96146.t1	MTR_2g020710	51.515	66	28	2	18	83	282	343	7.53e-12	59.7
MS.gene96146.t1	MTR_2g020710	66.667	39	13	0	18	56	371	409	1.41e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96146.t1	AT5G18840	82.051	39	7	0	20	58	368	406	2.92e-14	66.6

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Find 20 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCTCATACATTATTACCCA+AGG	0.600251	1.4:-21263381	None:intergenic
AGCGTTGGTGGTTCCGTTGG+TGG	0.514223	1.4:-21262287	None:intergenic
ATCCAAGTCACACACAATCT+TGG	0.455959	1.4:+21263496	MS.gene96146:CDS
ATGCCGACAACAGCTAATAT+TGG	0.437641	1.4:-21263205	None:intergenic
ATTAGCTGTTGTCGGCATTC+TGG	0.328804	1.4:+21263210	MS.gene96146:CDS
CACCAACGCTCCAAGTTTGT+CGG	0.519106	1.4:+21262300	MS.gene96146:CDS
CACCAAGATTGTGTGTGACT+TGG	0.490961	1.4:-21263498	None:intergenic
CACCGACAAACTTGGAGCGT+TGG	0.534988	1.4:-21262302	None:intergenic
CAGTTTCATGGAACCACCAA+CGG	0.584419	1.4:+21262274	None:intergenic
CGACAAACTTGGAGCGTTGG+TGG	0.492822	1.4:-21262299	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACCGCTTATAAGTTATAA+CGG	+	chr1.4:21262967-21262986	MS.gene96146:intron	30.0%
CTTATTAACAATTGTGCTCA+TGG	+	chr1.4:21263458-21263477	MS.gene96146:intron	30.0%
GAGATATAGTGTACATCATT+TGG	+	chr1.4:21262711-21262730	MS.gene96146:intron	30.0%
TATCCAAAAAGTTGCAGATA+GGG	+	chr1.4:21262803-21262822	MS.gene96146:intron	30.0%
TCCAAACTTATCCATCAAAA+TGG	-	chr1.4:21262944-21262963	None:intergenic	30.0%
AAAAAATAAGCAAGCTGCAC+AGG	-	chr1.4:21263526-21263545	None:intergenic	35.0%
AAAAATAAGCAAGCTGCACA+GGG	-	chr1.4:21263525-21263544	None:intergenic	35.0%
ACCTCATACATTATTACCCA+AGG	-	chr1.4:21263384-21263403	None:intergenic	35.0%
ATCCAAAAAGTTGCAGATAG+GGG	+	chr1.4:21262804-21262823	MS.gene96146:intron	35.0%
ATGGCTCCCAAAATAATGAA+TGG	-	chr1.4:21262925-21262944	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	21262281	21263588	21262281	ID=MS.gene96146
chr1.4	mRNA	21262281	21263588	21262281	ID=MS.gene96146.t1;Parent=MS.gene96146
chr1.4	exon	21262281	21262334	21262281	ID=MS.gene96146.t1.exon1;Parent=MS.gene96146.t1
chr1.4	CDS	21262281	21262334	21262281	ID=cds.MS.gene96146.t1;Parent=MS.gene96146.t1
chr1.4	exon	21263178	21263231	21263178	ID=MS.gene96146.t1.exon2;Parent=MS.gene96146.t1
chr1.4	CDS	21263178	21263231	21263178	ID=cds.MS.gene96146.t1;Parent=MS.gene96146.t1
chr1.4	exon	21263342	21263401	21263342	ID=MS.gene96146.t1.exon3;Parent=MS.gene96146.t1
chr1.4	CDS	21263342	21263401	21263342	ID=cds.MS.gene96146.t1;Parent=MS.gene96146.t1
chr1.4	exon	21263484	21263588	21263484	ID=MS.gene96146.t1.exon4;Parent=MS.gene96146.t1
chr1.4	CDS	21263484	21263588	21263484	ID=cds.MS.gene96146.t1;Parent=MS.gene96146.t1

Gene Sequence

>MS.gene96146

ATGGAACCACCAACGGAACCACCAACGCTCCAAGTTTGTCGGTGTCCGTGCGAAGTAAGCTGCAATAGTTTCATCCAGAAAATTTTGCCTTTGGATTCTCATTAAACTAAGGAGAGTGTAATTATGACTGATTCAGTTTCGGTATTTGAAGTAAGTGATTCTGTGATTGTGAATTTTGTTATTGTATTGTGTTATGATTAATTTGATTGAGGTGTGGTGTATTGTGTGTGTGACGGTTTGAGGGAAATTCGTTATGGCGAGGAGATTGCTTGATTTGCAGATGGATATATTGTTGTGTGAAATGAGTATAATTCGTCTGCATCATATGCTTACGATAAAAATATGGTAAACTCATATTTATTAATATGTTTTTTGTTGTTTAAATTTGTTTATTTGGCATTTCGGTTGAAGCATTTAGTGGTTTTGTTTTGAGATATAGTGTACATCATTTGGTAATTTTGAGTTTTGTGTGTTGCCATTATGTTGTTGGATTTATCACCAAGAAGCTGGAAGGGTTGGTTCTATCCAAAAAGTTGCAGATAGGGGTAGTTTACTATCCCTATATGAATTTCTCATACAATTATTTATTGATAATATAATTGTACTTTTATATCAGCATATATTAAATTGAATGACAGGTTCCATTCATTATTTTGGGAGCCATTTTGATGGATAAGTTTGGAAGAAGACCGCTTATAAGTTATAACGGTAATTCTGTTTTCAAGTATTTAAAATTTTGATAATACCATTAATAAGGGGAAATGCCTAATAGAAGTGTTTATATGCATGTAGGCTTCAACAAGTGGAACATTTTTAATCATATTTTCTCTTTAGATTATGATGTGTATCTCTCAATTAGTCAATTTTGAAACTTTGCTATATTATTCCATGGATCAGGATCAGAACTTGCTGCTTGAGTTGGTACCAATATTAGCTGTTGTCGGCATTCTGGTGAGTCTAATTTGAAAATGTTAATCAAGGAATTGGAGTTAATGAAAAGTTAGTTAATCAGATACATTCTTTAAGCATATTTGACCTGAAATTGTATCAAATTGTATCAGATATACGTAGCAGCATTTTCGATTGGAATGGGACCGGTTCCTTGGGTAATAATGTATGAGGTATGTGTCATTTGGCAAAGCACACTTAATGGTTTTATGGCTTTCGTAGTGCAACTCTTATTAACAATTGTGCTCATGGAAGATATTGAGAAAAATCCAAGTCACACACAATCTTGGTGTCCCTGTGCAGCTTGCTTATTTTTTGCTTGGTAGAGGTTGTTGGCAGTACTGCTGCTGCTGGTTTTGA

Protein sequence

>MS.gene96146.t1

MEPPTEPPTLQVCRCPCEDQNLLLELVPILAVVGILIYVAAFSIGMGPVPWVIMYEILRKIQVTHNLGVPVQLAYFLLGRGCWQYCCCWF