AlfalfaGEDB | MS.gene060781

M. sativa cultivar XinJiangDaYe / MS.gene060781

KEGG: K18442
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060781.t1	KEH33000.1	84.2	38	6	0	89	126	929	966	1.30E-07	66.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060781.t1	G7IYN4	84.2	38	6	0	89	126	929	966	9.6e-08	66.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049501	MS.gene060781	0.806635	7.47E-50	-1.69E-46
MS.gene050156	MS.gene060781	0.810935	9.00E-51	-1.69E-46
MS.gene050442	MS.gene060781	0.802094	6.60E-49	-1.69E-46
MS.gene050844	MS.gene060781	0.800458	1.43E-48	-1.69E-46
MS.gene052190	MS.gene060781	0.804858	1.77E-49	-1.69E-46
MS.gene052519	MS.gene060781	0.81019	1.30E-50	-1.69E-46
MS.gene052863	MS.gene060781	0.805635	1.21E-49	-1.69E-46
MS.gene052896	MS.gene060781	0.805851	1.09E-49	-1.69E-46
MS.gene054236	MS.gene060781	0.802833	4.65E-49	-1.69E-46
MS.gene055358	MS.gene060781	0.81339	2.62E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060781.t1	MTR_3g013790	84.211	38	6	0	89	126	929	966	5.62e-13	66.6
MS.gene060781.t1	MTR_3g013790	84.211	38	6	0	89	126	929	966	6.31e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACTCCAACACCACAAT+CGG	0.445483	4.4:+70814549	None:intergenic
AATCAATGTCCAGAGGATAC+GGG	0.590039	4.4:-70813753	MS.gene060781:CDS
AATTCATCCGATTGTGGTGT+TGG	0.450566	4.4:-70814556	MS.gene060781:CDS
ACAACCATCTACAGTCAATT+TGG	0.307079	4.4:+70813691	None:intergenic
AGCAAGAATGAGCTAAAAGT+TGG	0.491828	4.4:+70813726	None:intergenic
AGTTACATGATTTGCAGAGA+AGG	0.533514	4.4:-70812850	MS.gene060781:CDS
ATAATTTCATCATCAGTCAA+CGG	0.547789	4.4:+70811693	None:intergenic
ATGATTTGCAGAGAAGGATT+TGG	0.369589	4.4:-70812844	MS.gene060781:CDS
CAATCAATGTCCAGAGGATA+CGG	0.421148	4.4:-70813754	MS.gene060781:CDS
CAGGAACATTATGAACAGAT+TGG	0.531891	4.4:-70812256	MS.gene060781:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTTCATAACTGTTGAC+AGG	-	chr4.4:70813080-70813099	MS.gene060781:intron	30.0%
AAGCTCTCCTAAAGAATTTA+TGG	+	chr4.4:70813433-70813452	None:intergenic	30.0%
AATCATCTAGTTGAAACACA+TGG	-	chr4.4:70812978-70812997	MS.gene060781:intron	30.0%
ACGATAAACACTTATGCTAA+AGG	-	chr4.4:70813492-70813511	MS.gene060781:intron	30.0%
AGGATTAATGAAGCCATTAT+AGG	+	chr4.4:70813891-70813910	None:intergenic	30.0%
AGTTAATTACGATCATTGGA+TGG	+	chr4.4:70812940-70812959	None:intergenic	30.0%
ATAACCCTTGACAAATTGAA+AGG	-	chr4.4:70811928-70811947	MS.gene060781:intron	30.0%
ATGACAATAGAGAGAGAAAA+AGG	-	chr4.4:70814831-70814850	MS.gene060781:intron	30.0%
ATGCAGTTAATTACGATCAT+TGG	+	chr4.4:70812944-70812963	None:intergenic	30.0%
ATTAACTTAGCTATGCAAGT+TGG	-	chr4.4:70813769-70813788	MS.gene060781:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	70811705	70815210	70811705	ID=MS.gene060781
chr4.4	mRNA	70811705	70815210	70811705	ID=MS.gene060781.t1;Parent=MS.gene060781
chr4.4	exon	70815053	70815210	70815053	ID=MS.gene060781.t1.exon1;Parent=MS.gene060781.t1
chr4.4	CDS	70815053	70815210	70815053	ID=cds.MS.gene060781.t1;Parent=MS.gene060781.t1
chr4.4	exon	70814501	70814608	70814501	ID=MS.gene060781.t1.exon2;Parent=MS.gene060781.t1
chr4.4	CDS	70814501	70814608	70814501	ID=cds.MS.gene060781.t1;Parent=MS.gene060781.t1
chr4.4	exon	70813685	70813799	70813685	ID=MS.gene060781.t1.exon3;Parent=MS.gene060781.t1
chr4.4	CDS	70813685	70813799	70813685	ID=cds.MS.gene060781.t1;Parent=MS.gene060781.t1
chr4.4	exon	70812777	70812884	70812777	ID=MS.gene060781.t1.exon4;Parent=MS.gene060781.t1
chr4.4	CDS	70812777	70812884	70812777	ID=cds.MS.gene060781.t1;Parent=MS.gene060781.t1
chr4.4	exon	70812245	70812275	70812245	ID=MS.gene060781.t1.exon5;Parent=MS.gene060781.t1
chr4.4	CDS	70812245	70812275	70812245	ID=cds.MS.gene060781.t1;Parent=MS.gene060781.t1
chr4.4	exon	70811705	70811733	70811705	ID=MS.gene060781.t1.exon6;Parent=MS.gene060781.t1
chr4.4	CDS	70811705	70811733	70811705	ID=cds.MS.gene060781.t1;Parent=MS.gene060781.t1

Gene Sequence

>MS.gene060781

ATGATTTCCAACTGTTTGGTTTGGTTGGAAAAGGAATTCAGCCGTATTTCCTATCAATTGTTGCACGAGTCATCTGATTTCGGTCAATTTTATGGGATTGGAACACTACAAAAAAGTGCTGTTTTCACAGGGATATTTCCCTGGGGCAGAAATCCCTGGTAAATTTGCCAGGAGTAAGACCCTGTCATATCCCCTGGTTTGCATTTGCCAGGAGCAATATATCATAACCCTTGACAAATTGAAAGGGCCCCCTTACTTTTTGGCCTTTGCTATTAACCTCACCCAAATATAATTTTTTTGTCTGATATCTCTCAAAAGAAAATAGAAAGAGAACCCATAAATATATTTATGGATTACTGAAGAATCGGAAAAGGCGAGTTGAAGGGGAACTTACTGAAGAATCGGTGACTAGAGCGCTTTTCTGGTAACATATATTTATGGATTCCAATTTTTTCTATTTTTTGGTATTCATAATTTCTTGATTTGGATTTTATGTTTATGATTTGTGATTTTCACCTACTAGGGATTTGATTTTTCAGATTTAATTTTTATGTTACATTTTAGGGATTTGATATTTATTCAATTTTGATGTTACATTTTAGGAGAATGGAGGCAGATTCATCAACTGTTTCAATTCATCCGATTGTGGTGTTGGAGTTGTTGAAAATTTTGTTGGAGAATGCTGGAGCTGTTTTCAGAACTAGTGAAAGGTAGAGTGTACCTTCTGTATTGATACACTCTTTTTTTCTCTCATTTTGCTGTATTTTTATTTAGGGGATTCAGTTGAAACTTTTTTAGTTAGCATCTTATATTAGTTAGGGTGGTGAGATATGTATTGGTTTAGTGGTGTAGATGACTAGCTGTTACTACCTCCGTCCCGGTATAATTGACCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGGTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACGGAGGGAGTATTACTTATGAGTTAAATATGGTCTTGAAGCTCATAAACTTCTAGGTGTTCAAATATAACTTCTAGGTGTTCAAAATCGTGGTTACTTGTTTAATGCATGGTTAGTGAGTTACGAAACCTTGTTATAGTCACTAACCATCCAATGATCGTAATTAACTGCATATTTGAACTACATTAATCATCTAGTTGAAACACATGGTTTCACCATATGCATTTGTTCTCTCTAATTCAACAATTCAAAAATGTTGCTACAGTTTTTTTTGATAGTGCAGATAATGAAACTTTCATAACTGTTGACAGGTTGAATTTTCAAGTTTGGAGACATTGAAACTTTTCTCAATCAATGTCCAGAGGATACGGGATGACCAACTTTTAGCTCATTCTTGCTTTCAAAATTTGACCAAATTGACTGTAGATGGTTGTGAAAGGGTAAGCATTTCAAATTGCTTCATGTTTTCTTTTGTCTATAATTTTTCTAGTTTTTCTTTGTTAATTAGTTGTTAGACTTAGGGTCAGTTGGATTGATTTATATGAGCTTATCTATTGGCATAAACACTTACGAGAGTGTTTGTCAGAGCTTATGAAAACAACTTATAACATGTCTGCAAGCTATATTTTCAGCTTATTTCCATAAATTCTTTAGGAGAGCTTATATTTTGTTACAAAAATAGCTTATACATAAGCACTTACACGATAAACACTTATGCTAAAGGGCTTAATTGACTAGTTTATAACCGCTTATGCTAAAATAGCTTTTGAATGTGTTCCTAAGTCATGTGCTAAACAAATTACATATCACTAGCATCACTTATGTAGCAGATGTATAAGTTACAAACCAAATTATCCTAGCACGTGCGACAAATTTTAATTGTAATTGATATTTTGGTGCCTTTTCATATTTTCAATGATCAGTACTAAGTTTTGGTTTTGCAATCCTTTAGGCTCTTGAGCATAGTTTGTAGTAGGCATTAACTTAGCTATGCAAGTTGGTGCGCCACCAACAAGGTTTTCCTACTTCAAGACAACGAGAATTTCAACTGCATTTTATCAACATTGTTAAGATCACATATTGTACTAATACTCCCTCCTATAATGGCTTCATTAATCCTCTTCCCTTGAGCTAAGTTTGGGTTGAGATAGGCCTTGACTGTTCTCAATTCTAATGTGGAACTTTACTTATGCCACACCTGATGTTGACGTGCCTCACATGCTATTGCCCTACATTTCAGGAATTTGATAGAAGTTACATGATTTGCAGAGAAGGATTTGGTCGATTGTCACTGAATTTGATCGATTTCTCATTGGATTTTGTCGATACTCTGCATGCTTGTGTTCAGGTTAGTGAAATTCTTTCTCATTCGATTATTTCATTGTTATATTTTAAACTGTATTTTTAAATTTGCTACAATAGATGAATCTGTTTAAGCTTTGTTCAAAAATGGTTTGACCAATATTATTAAAAAATCATTTTCACAGTATGTACTTTGTCTTAAATGTAAGTGCAATATCTCTTTCCTTCACTTTATTAATTTTTTTGAGTTCCTTCACTAACTAAAATTCCATTTCAAAATCTTATGTTAAATGAATGCTTTGTTCTCTTATGTATAAAGCTATCTCTATAAGAAATAATTGAATGTAAGATTGCTTGTTTATCCAGTACCTACGCTAATCGTGTCATTCAAATTTCAATGTAATGCTAGTAGCAATCTGATGTGCTTAATTATAATTTATATCTCTATTCTTTATAATTTACTACATGGTTTTATTAATAAATTAAGCTCTTATGTGTGAGTGTAATGCTAGTATTAATGGCCCACATGTTGGTTATGTTTGAACAGGAACATTATGAACAGATTGGCCTTTTCTGGGGTATTGCAGCTCTGATGGTTCTGTTGTTATTTCTGAGAGGGTCAAACATTTTAACGAGTTAATAATTCAATTTATGAAATTTAATTAGAGGAATGATATTTTGACATCCAATTTTCAACAACTTTTAGGGGCAACCTTTTTCCTCTATTCTTATTCGACAATGACAATAGAGAGAGAAAAAGGAAGAGAGAGAATAAAAGTGTAATGAGAGTATGAAAGAGAGTTGTCCCTAAAAGTTGTTGAAAATTGGATGTCAAAATATCATTTCTCATTTAATTATGATGTATTTTGTTCTAGTGAAGGCTCTTTACTCTTTGGGTTATTCCCAAGTTGCTCTTTGGGTCAAACATTTTTATATTGTAGTGCTATTGCAGGGTATAATAAGATGAGTGGTTTGAGAAATCCGAGAAAGCCAACATGGGAGACTCCCACATTAAGTTAAAAATTATAATTAATGTTTTTTTTTATTTAGTAAGTTAATATGATATTATAATTGTTTTTTTTTCTTCAGGTTTTTGGAGACCAAAACCCGTTGACTGA

Protein sequence

>MS.gene060781.t1

MISNCLVWLEKEFSRISYQLLHESSDFGQFYGIGTLQKSAVFTGIFPWGRNPWRMEADSSTVSIHPIVVLELLKILLENAGAVFRTSESLETLKLFSINVQRIRDDQLLAHSCFQNLTKLTVDGCEREFDRSYMICREGFGRLSLNLIDFSLDFVDTLHACVQEHYEQIGLFWGFWRPKPVD