Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97790.t1 | XP_013447780.1 | 92.5 | 268 | 20 | 0 | 1 | 268 | 1 | 268 | 1.50E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97790.t1 | P93332 | 91.4 | 268 | 23 | 0 | 1 | 268 | 1 | 268 | 2.6e-125 | 449.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97790.t1 | A0A072TX72 | 92.5 | 268 | 20 | 0 | 1 | 268 | 1 | 268 | 1.1e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene97790 | 0.808066 | 3.72E-50 | -1.69E-46 |
| MS.gene049549 | MS.gene97790 | 0.804057 | 2.59E-49 | -1.69E-46 |
| MS.gene051385 | MS.gene97790 | 0.800533 | 1.38E-48 | -1.69E-46 |
| MS.gene051996 | MS.gene97790 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene052223 | MS.gene97790 | 0.822588 | 2.19E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene97790 | 0.850885 | 1.27E-60 | -1.69E-46 |
| MS.gene054277 | MS.gene97790 | 0.851398 | 9.11E-61 | -1.69E-46 |
| MS.gene054742 | MS.gene97790 | 0.88969 | 1.93E-73 | -1.69E-46 |
| MS.gene055215 | MS.gene97790 | 0.823673 | 1.22E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene97790 | 0.85154 | 8.30E-61 | -1.69E-46 |
| MS.gene056590 | MS.gene97790 | 0.836175 | 1.09E-56 | -1.69E-46 |
| MS.gene056591 | MS.gene97790 | 0.835079 | 2.07E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene97790 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene97790 | 0.877903 | 4.33E-69 | -1.69E-46 |
| MS.gene056922 | MS.gene97790 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene056923 | MS.gene97790 | 0.835848 | 1.32E-56 | -1.69E-46 |
| MS.gene056924 | MS.gene97790 | 0.814874 | 1.23E-51 | -1.69E-46 |
| MS.gene057544 | MS.gene97790 | 0.80768 | 4.49E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene97790 | 0.827826 | 1.26E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene97790 | 0.846934 | 1.59E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97790.t1 | MTR_7g405730 | 97.388 | 268 | 7 | 0 | 1 | 268 | 1 | 268 | 0.0 | 526 |
| MS.gene97790.t1 | MTR_7g405710 | 80.315 | 254 | 42 | 3 | 1 | 251 | 1 | 249 | 3.84e-136 | 385 |
| MS.gene97790.t1 | MTR_5g067530 | 68.240 | 233 | 68 | 2 | 4 | 236 | 5 | 231 | 8.17e-111 | 320 |
| MS.gene97790.t1 | MTR_2g007890 | 51.408 | 284 | 109 | 5 | 1 | 259 | 4 | 283 | 2.45e-96 | 285 |
| MS.gene97790.t1 | MTR_8g096320 | 51.626 | 246 | 115 | 2 | 1 | 242 | 1 | 246 | 2.35e-85 | 255 |
| MS.gene97790.t1 | MTR_3g098910 | 48.649 | 259 | 127 | 3 | 1 | 258 | 1 | 254 | 1.93e-83 | 253 |
| MS.gene97790.t1 | MTR_8g096310 | 46.923 | 260 | 114 | 3 | 1 | 259 | 1 | 237 | 6.42e-80 | 242 |
| MS.gene97790.t1 | MTR_7g007490 | 47.876 | 259 | 116 | 2 | 2 | 260 | 3 | 242 | 5.14e-78 | 237 |
| MS.gene97790.t1 | MTR_5g092600 | 46.032 | 252 | 118 | 2 | 4 | 255 | 5 | 238 | 2.34e-74 | 227 |
| MS.gene97790.t1 | MTR_3g098930 | 54.167 | 192 | 85 | 3 | 9 | 198 | 10 | 200 | 5.32e-64 | 199 |
| MS.gene97790.t1 | MTR_8g096320 | 48.168 | 191 | 95 | 2 | 56 | 242 | 1 | 191 | 6.64e-57 | 181 |
| MS.gene97790.t1 | MTR_2g436310 | 42.593 | 216 | 124 | 0 | 9 | 224 | 5 | 220 | 2.52e-53 | 173 |
| MS.gene97790.t1 | MTR_1g029380 | 38.189 | 254 | 143 | 5 | 1 | 252 | 1 | 242 | 6.80e-46 | 154 |
| MS.gene97790.t1 | MTR_3g089125 | 36.475 | 244 | 146 | 4 | 12 | 253 | 8 | 244 | 1.99e-45 | 153 |
| MS.gene97790.t1 | MTR_6g007633 | 37.387 | 222 | 129 | 6 | 13 | 227 | 12 | 230 | 1.57e-41 | 142 |
| MS.gene97790.t1 | MTR_8g042490 | 38.009 | 221 | 127 | 3 | 13 | 231 | 18 | 230 | 2.66e-40 | 139 |
| MS.gene97790.t1 | MTR_3g080990 | 34.800 | 250 | 155 | 5 | 13 | 256 | 12 | 259 | 6.03e-40 | 139 |
| MS.gene97790.t1 | MTR_6g007637 | 39.320 | 206 | 116 | 5 | 13 | 212 | 13 | 215 | 5.26e-39 | 136 |
| MS.gene97790.t1 | MTR_1g028460 | 32.296 | 257 | 161 | 5 | 6 | 257 | 3 | 251 | 3.06e-37 | 132 |
| MS.gene97790.t1 | MTR_6g007623 | 35.909 | 220 | 134 | 5 | 13 | 227 | 9 | 226 | 3.12e-37 | 131 |
| MS.gene97790.t1 | MTR_8g099730 | 33.476 | 233 | 151 | 3 | 13 | 242 | 22 | 253 | 1.29e-36 | 130 |
| MS.gene97790.t1 | MTR_3g090950 | 30.800 | 250 | 160 | 5 | 6 | 245 | 3 | 249 | 2.22e-35 | 127 |
| MS.gene97790.t1 | MTR_2g073190 | 38.288 | 222 | 125 | 6 | 13 | 229 | 18 | 232 | 3.09e-35 | 133 |
| MS.gene97790.t1 | MTR_3g090940 | 30.924 | 249 | 161 | 5 | 6 | 245 | 3 | 249 | 1.66e-34 | 125 |
| MS.gene97790.t1 | MTR_4g106990 | 30.918 | 207 | 137 | 2 | 30 | 234 | 36 | 238 | 1.72e-26 | 103 |
| MS.gene97790.t1 | MTR_8g099730 | 30.526 | 190 | 128 | 3 | 56 | 242 | 1 | 189 | 6.27e-22 | 90.5 |
| MS.gene97790.t1 | MTR_6g007610 | 28.959 | 221 | 137 | 5 | 13 | 218 | 12 | 227 | 1.94e-20 | 87.8 |
| MS.gene97790.t1 | MTR_2g008140 | 53.846 | 52 | 22 | 1 | 35 | 86 | 19 | 68 | 2.93e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97790.t1 | AT5G13170 | 63.118 | 263 | 92 | 3 | 3 | 262 | 5 | 265 | 7.67e-113 | 327 |
| MS.gene97790.t1 | AT5G23660 | 52.364 | 275 | 119 | 3 | 4 | 268 | 6 | 278 | 1.83e-94 | 280 |
| MS.gene97790.t1 | AT3G48740 | 50.909 | 275 | 124 | 3 | 4 | 267 | 6 | 280 | 1.27e-93 | 278 |
| MS.gene97790.t1 | AT5G50790 | 48.936 | 282 | 123 | 2 | 1 | 261 | 1 | 282 | 1.86e-91 | 272 |
| MS.gene97790.t1 | AT5G50800 | 58.150 | 227 | 94 | 1 | 1 | 226 | 1 | 227 | 6.62e-85 | 256 |
| MS.gene97790.t1 | AT4G25010 | 49.643 | 280 | 124 | 4 | 1 | 263 | 1 | 280 | 7.33e-84 | 253 |
| MS.gene97790.t1 | AT2G39060 | 46.484 | 256 | 132 | 1 | 1 | 256 | 1 | 251 | 3.61e-74 | 227 |
| MS.gene97790.t1 | AT3G16690 | 39.381 | 226 | 134 | 2 | 8 | 231 | 4 | 228 | 4.64e-54 | 175 |
| MS.gene97790.t1 | AT3G16690 | 39.381 | 226 | 134 | 2 | 8 | 231 | 39 | 263 | 8.66e-54 | 175 |
| MS.gene97790.t1 | AT4G15920 | 41.827 | 208 | 120 | 1 | 9 | 215 | 5 | 212 | 3.67e-53 | 173 |
| MS.gene97790.t1 | AT1G21460 | 38.168 | 262 | 143 | 5 | 1 | 259 | 1 | 246 | 2.06e-49 | 163 |
| MS.gene97790.t1 | AT4G10850 | 34.630 | 257 | 160 | 5 | 1 | 249 | 1 | 257 | 2.57e-42 | 145 |
| MS.gene97790.t1 | AT5G53190 | 32.463 | 268 | 150 | 8 | 6 | 257 | 3 | 255 | 1.22e-37 | 133 |
| MS.gene97790.t1 | AT5G40260 | 36.123 | 227 | 136 | 6 | 3 | 221 | 2 | 227 | 6.51e-37 | 131 |
| MS.gene97790.t1 | AT1G21460 | 38.835 | 206 | 119 | 3 | 1 | 204 | 1 | 201 | 1.77e-36 | 129 |
| MS.gene97790.t1 | AT5G62850 | 34.389 | 221 | 134 | 5 | 13 | 225 | 12 | 229 | 4.18e-36 | 129 |
| MS.gene97790.t1 | AT1G66770 | 33.028 | 218 | 139 | 3 | 13 | 225 | 14 | 229 | 5.16e-34 | 124 |
| MS.gene97790.t1 | AT3G14770 | 36.726 | 226 | 121 | 8 | 13 | 228 | 18 | 231 | 1.41e-33 | 122 |
| MS.gene97790.t1 | AT5G40260 | 38.251 | 183 | 107 | 4 | 10 | 187 | 9 | 190 | 8.27e-33 | 119 |
| MS.gene97790.t1 | AT5G62850 | 35.227 | 176 | 106 | 4 | 13 | 183 | 12 | 184 | 1.09e-28 | 108 |
| MS.gene97790.t1 | AT3G16690 | 35.333 | 150 | 94 | 2 | 8 | 155 | 4 | 152 | 7.37e-28 | 106 |
| MS.gene97790.t1 | AT3G28007 | 34.928 | 209 | 132 | 3 | 13 | 218 | 12 | 219 | 1.32e-27 | 107 |
Find 62 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCGTTCTTGGTGTTCT+TGG | 0.169280 | 7.4:+94238422 | MS.gene97790:CDS |
| CACACATCCAAATGAGTTTA+TGG | 0.188728 | 7.4:-94238674 | None:intergenic |
| CCACTTCGTGTCCAAGTTCT+TGG | 0.244317 | 7.4:+94238950 | MS.gene97790:CDS |
| TCGATTTCTTCTTGTATATA+CGG | 0.244759 | 7.4:-94238552 | None:intergenic |
| CTCATTACCATAAACTCATT+TGG | 0.319248 | 7.4:+94238667 | MS.gene97790:CDS |
| AGGTAACGTCATTTCGTTCT+TGG | 0.323739 | 7.4:+94238413 | MS.gene97790:intron |
| CTTAACTTTCAAGTTACTTT+CGG | 0.328483 | 7.4:+94238868 | MS.gene97790:CDS |
| AATGTGTTGGGTTTCGTATT+GGG | 0.328786 | 7.4:+94239504 | MS.gene97790:CDS |
| CTTTGTTCAGCTCCATGCTT+TGG | 0.359151 | 7.4:+94238608 | MS.gene97790:CDS |
| AATACGAAACCCAACACATT+TGG | 0.368529 | 7.4:-94239501 | None:intergenic |
| AAATGTGTTGGGTTTCGTAT+TGG | 0.380441 | 7.4:+94239503 | MS.gene97790:CDS |
| CACAAACCCATCCAAGAACT+TGG | 0.408159 | 7.4:-94238961 | None:intergenic |
| ATTTAAACTCCAGAGCCAAT+AGG | 0.432197 | 7.4:-94239708 | None:intergenic |
| TTCGTGTCCAAGTTCTTGGA+TGG | 0.434485 | 7.4:+94238954 | MS.gene97790:CDS |
| ATACGAAACCCAACACATTT+GGG | 0.439248 | 7.4:-94239500 | None:intergenic |
| TGCTGCTGTATGCAATCTAT+AGG | 0.452278 | 7.4:+94239538 | MS.gene97790:CDS |
| AATAATACCCTTGCATCTCT+TGG | 0.455895 | 7.4:-94238736 | None:intergenic |
| GTTCAAAGTGAGGAACCTAT+TGG | 0.474459 | 7.4:+94239693 | MS.gene97790:CDS |
| AGTGAGGAACCTATTGGCTC+TGG | 0.490260 | 7.4:+94239699 | MS.gene97790:CDS |
| GTACATACCACAATGCTTAG+TGG | 0.491986 | 7.4:-94239013 | None:intergenic |
| GCCACAATGTGGTTTGGCTA+CGG | 0.514248 | 7.4:+94239201 | MS.gene97790:CDS |
| TTGAGTGCCACAATGTGGTT+TGG | 0.514750 | 7.4:+94239195 | MS.gene97790:CDS |
| TCGTGTCCAAGTTCTTGGAT+GGG | 0.519498 | 7.4:+94238955 | MS.gene97790:CDS |
| GGCCATCAGTCACAACACTT+TGG | 0.519950 | 7.4:+94237910 | MS.gene97790:CDS |
| CTGAACAAAGCTACTAGGTA+AGG | 0.520832 | 7.4:-94238595 | None:intergenic |
| TGGAGCTGAACAAAGCTACT+AGG | 0.521833 | 7.4:-94238600 | None:intergenic |
| CTGCAAAGACACTAACACTA+AGG | 0.526938 | 7.4:-94238988 | None:intergenic |
| GTGCAGCTCCCAAATGTGTT+GGG | 0.530668 | 7.4:+94239492 | MS.gene97790:intron |
| GAACAAGGGTGATGATAATG+AGG | 0.540496 | 7.4:+94239665 | MS.gene97790:CDS |
| ATGCAATCTATAGGAATGGT+GGG | 0.547366 | 7.4:+94239547 | MS.gene97790:CDS |
| CAAATGAGTTTATGGTAATG+AGG | 0.551806 | 7.4:-94238666 | None:intergenic |
| CATAAACTCATTTGGATGTG+TGG | 0.553344 | 7.4:+94238675 | MS.gene97790:CDS |
| GTTACTTTCGGCAATGAACG+TGG | 0.564481 | 7.4:+94238880 | MS.gene97790:CDS |
| TACAAGAAGAAATCGACAGA+GGG | 0.564739 | 7.4:+94238559 | MS.gene97790:CDS |
| GACACGAAGTGGACCATGCA+CGG | 0.579340 | 7.4:-94238939 | None:intergenic |
| TGGCTACGGTCTCTTCCTCA+AGG | 0.581206 | 7.4:+94239215 | MS.gene97790:CDS |
| TGTGCAGCTCCCAAATGTGT+TGG | 0.581637 | 7.4:+94239491 | MS.gene97790:intron |
| TATTGTTATAGAGACCCAAT+CGG | 0.581864 | 7.4:+94239620 | MS.gene97790:CDS |
| GATGTACAATATGATGTAGA+TGG | 0.583280 | 7.4:-94238704 | None:intergenic |
| GTCACTAACTATGCCGTGCA+TGG | 0.586420 | 7.4:+94238926 | MS.gene97790:CDS |
| CCAAGAACTTGGACACGAAG+TGG | 0.588617 | 7.4:-94238950 | None:intergenic |
| CGGCATAGTTAGTGACTATG+AGG | 0.591246 | 7.4:-94238919 | None:intergenic |
| GACTATGAGGATCAAAGCAA+AGG | 0.596059 | 7.4:-94238906 | None:intergenic |
| CTGTATGCAATCTATAGGAA+TGG | 0.607405 | 7.4:+94239543 | MS.gene97790:CDS |
| CTATGCACCAAGAGATGCAA+GGG | 0.607841 | 7.4:+94238729 | MS.gene97790:CDS |
| TGCATAGTACAACCAAAGCA+TGG | 0.611574 | 7.4:-94238620 | None:intergenic |
| TATGCAATCTATAGGAATGG+TGG | 0.615800 | 7.4:+94239546 | MS.gene97790:CDS |
| AGCCAAAGTGTTGTGACTGA+TGG | 0.616515 | 7.4:-94237912 | None:intergenic |
| CAGCAATGCATATGTCCTTG+AGG | 0.616655 | 7.4:-94239230 | None:intergenic |
| AGAGTGAATGACAAATTGAA+AGG | 0.622293 | 7.4:-94239168 | None:intergenic |
| TACTTTCGGCAATGAACGTG+GGG | 0.627256 | 7.4:+94238882 | MS.gene97790:CDS |
| GTACGTACCAAGCATGCCAA+AGG | 0.629235 | 7.4:-94237939 | None:intergenic |
| TTACTTTCGGCAATGAACGT+GGG | 0.632501 | 7.4:+94238881 | MS.gene97790:CDS |
| TGCAAAGACACTAACACTAA+GGG | 0.634955 | 7.4:-94238987 | None:intergenic |
| TGCAATCTATAGGAATGGTG+GGG | 0.637303 | 7.4:+94239548 | MS.gene97790:CDS |
| TGCAGCACCACTAAGCATTG+TGG | 0.637500 | 7.4:+94239006 | MS.gene97790:CDS |
| TGAACAAGAAAAGAAGAACA+AGG | 0.638374 | 7.4:+94239650 | MS.gene97790:CDS |
| GAACAAGAAAAGAAGAACAA+GGG | 0.658330 | 7.4:+94239651 | MS.gene97790:CDS |
| TCTATGCACCAAGAGATGCA+AGG | 0.675820 | 7.4:+94238728 | MS.gene97790:CDS |
| TCACATTGAGTGCCACAATG+TGG | 0.691357 | 7.4:+94239190 | MS.gene97790:CDS |
| ATACAAGAAGAAATCGACAG+AGG | 0.715649 | 7.4:+94238558 | MS.gene97790:CDS |
| ACCGTAGCCAAACCACATTG+TGG | 0.726020 | 7.4:-94239202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAAATAAAATTAG+TGG | + | chr7.4:94239274-94239293 | MS.gene97790:intron | 10.0% |
| !! | ATTTAAATAAATACTTACAT+TGG | - | chr7.4:94238450-94238469 | None:intergenic | 10.0% |
| !! | CATTCAATAATAAATATTTA+AGG | - | chr7.4:94238843-94238862 | None:intergenic | 10.0% |
| !! | TTATATATATTAATTGAGTA+AGG | - | chr7.4:94239050-94239069 | None:intergenic | 10.0% |
| !! | AGATATTAATGTTCAATTAT+TGG | - | chr7.4:94238791-94238810 | None:intergenic | 15.0% |
| !! | GATTTCATCAAAAAATAATT+AGG | - | chr7.4:94239399-94239418 | None:intergenic | 15.0% |
| !! | TAGTAAGAAAAAAACAAAAA+GGG | - | chr7.4:94238228-94238247 | None:intergenic | 15.0% |
| !! | TTAGTAAGAAAAAAACAAAA+AGG | - | chr7.4:94238229-94238248 | None:intergenic | 15.0% |
| !!! | TTTTCTTGAAATTTATATGT+AGG | + | chr7.4:94239110-94239129 | MS.gene97790:intron | 15.0% |
| !! | AAAACAATCAAATTATGACA+AGG | - | chr7.4:94239323-94239342 | None:intergenic | 20.0% |
| !! | ATATAATGTGTGTGTATAAA+CGG | - | chr7.4:94238305-94238324 | None:intergenic | 20.0% |
| !! | TTAATGTTCAATTATTGGAT+TGG | - | chr7.4:94238786-94238805 | None:intergenic | 20.0% |
| !! | TTGAAAATATATGGAAAATG+TGG | - | chr7.4:94238130-94238149 | None:intergenic | 20.0% |
| !!! | AGTTTGATTTATGAACTTAA+TGG | + | chr7.4:94239078-94239097 | MS.gene97790:intron | 20.0% |
| !!! | CATATATTTTCAATGCATTT+AGG | + | chr7.4:94238074-94238093 | MS.gene97790:intron | 20.0% |
| !!! | GTATTTTACTTTTTTGTTCT+AGG | + | chr7.4:94237994-94238013 | MS.gene97790:intron | 20.0% |
| ! | AAAAAAACAAAAAGGGAATG+TGG | - | chr7.4:94238221-94238240 | None:intergenic | 25.0% |
| ! | ACAAAATACATGTATACAAG+AGG | - | chr7.4:94238352-94238371 | None:intergenic | 25.0% |
| ! | TCGATTTCTTCTTGTATATA+CGG | - | chr7.4:94238555-94238574 | None:intergenic | 25.0% |
| ! | TTACCTGTACATCAAATATA+GGG | - | chr7.4:94238399-94238418 | None:intergenic | 25.0% |
| !! | TCTATAACAATACTTTTGAG+TGG | - | chr7.4:94239612-94239631 | None:intergenic | 25.0% |
| !!! | CTTAACTTTCAAGTTACTTT+CGG | + | chr7.4:94238868-94238887 | MS.gene97790:CDS | 25.0% |
| !!! | TTGTTCAATTTTTTCCGATT+GGG | - | chr7.4:94239637-94239656 | None:intergenic | 25.0% |
| AGAGTGAATGACAAATTGAA+AGG | - | chr7.4:94239171-94239190 | None:intergenic | 30.0% | |
| CTCATTACCATAAACTCATT+TGG | + | chr7.4:94238667-94238686 | MS.gene97790:CDS | 30.0% | |
| GAACAAGAAAAGAAGAACAA+GGG | + | chr7.4:94239651-94239670 | MS.gene97790:CDS | 30.0% | |
| GATGTACAATATGATGTAGA+TGG | - | chr7.4:94238707-94238726 | None:intergenic | 30.0% | |
| GCAAATAGATATACAAGTAC+TGG | + | chr7.4:94238016-94238035 | MS.gene97790:intron | 30.0% | |
| GTTACCTGTACATCAAATAT+AGG | - | chr7.4:94238400-94238419 | None:intergenic | 30.0% | |
| TATTGTTATAGAGACCCAAT+CGG | + | chr7.4:94239620-94239639 | MS.gene97790:CDS | 30.0% | |
| TGAACAAGAAAAGAAGAACA+AGG | + | chr7.4:94239650-94239669 | MS.gene97790:CDS | 30.0% | |
| TGGGGAAAAAACTATGAAAA+AGG | + | chr7.4:94239566-94239585 | MS.gene97790:CDS | 30.0% | |
| TGTGTGTATAAACGGTTAAT+TGG | - | chr7.4:94238297-94238316 | None:intergenic | 30.0% | |
| ! | CAAATGAGTTTATGGTAATG+AGG | - | chr7.4:94238669-94238688 | None:intergenic | 30.0% |
| !!! | CTTGTTCAATTTTTTCCGAT+TGG | - | chr7.4:94239638-94239657 | None:intergenic | 30.0% |
| AAATGTGTTGGGTTTCGTAT+TGG | + | chr7.4:94239503-94239522 | MS.gene97790:CDS | 35.0% | |
| AATAATACCCTTGCATCTCT+TGG | - | chr7.4:94238739-94238758 | None:intergenic | 35.0% | |
| AATACGAAACCCAACACATT+TGG | - | chr7.4:94239504-94239523 | None:intergenic | 35.0% | |
| AATGTGTTGGGTTTCGTATT+GGG | + | chr7.4:94239504-94239523 | MS.gene97790:CDS | 35.0% | |
| AGTAAGCTGCTAAAATGAAG+TGG | - | chr7.4:94238106-94238125 | None:intergenic | 35.0% | |
| ATACAAGAAGAAATCGACAG+AGG | + | chr7.4:94238558-94238577 | MS.gene97790:CDS | 35.0% | |
| ATACGAAACCCAACACATTT+GGG | - | chr7.4:94239503-94239522 | None:intergenic | 35.0% | |
| ATGCAATCTATAGGAATGGT+GGG | + | chr7.4:94239547-94239566 | MS.gene97790:CDS | 35.0% | |
| CACACATCCAAATGAGTTTA+TGG | - | chr7.4:94238677-94238696 | None:intergenic | 35.0% | |
| CATAAACTCATTTGGATGTG+TGG | + | chr7.4:94238675-94238694 | MS.gene97790:CDS | 35.0% | |
| CTGTATGCAATCTATAGGAA+TGG | + | chr7.4:94239543-94239562 | MS.gene97790:CDS | 35.0% | |
| GCAAAAAGTTGAATACCAAG+AGG | + | chr7.4:94238174-94238193 | MS.gene97790:intron | 35.0% | |
| GTAAGCTGCTAAAATGAAGT+GGG | - | chr7.4:94238105-94238124 | None:intergenic | 35.0% | |
| TACAAGAAGAAATCGACAGA+GGG | + | chr7.4:94238559-94238578 | MS.gene97790:CDS | 35.0% | |
| TATGCAATCTATAGGAATGG+TGG | + | chr7.4:94239546-94239565 | MS.gene97790:CDS | 35.0% | |
| TGAGGAAAAAGTTCAAAGTG+AGG | + | chr7.4:94239683-94239702 | MS.gene97790:CDS | 35.0% | |
| TGCAAAGACACTAACACTAA+GGG | - | chr7.4:94238990-94239009 | None:intergenic | 35.0% | |
| TTATCAACTCAACATCCTCT+TGG | - | chr7.4:94238192-94238211 | None:intergenic | 35.0% | |
| ! | ATGTATTTTGTGAGCAGCAA+AGG | + | chr7.4:94238361-94238380 | MS.gene97790:intron | 35.0% |
| !! | ATACTTTTGAGTGGCTCAAT+TGG | - | chr7.4:94239603-94239622 | None:intergenic | 35.0% |
| !!! | AACACTTTGGCTTTTACCTT+TGG | + | chr7.4:94237923-94237942 | MS.gene97790:CDS | 35.0% |
| AGGTAACGTCATTTCGTTCT+TGG | + | chr7.4:94238413-94238432 | MS.gene97790:intron | 40.0% | |
| CTGAACAAAGCTACTAGGTA+AGG | - | chr7.4:94238598-94238617 | None:intergenic | 40.0% | |
| CTGCAAAGACACTAACACTA+AGG | - | chr7.4:94238991-94239010 | None:intergenic | 40.0% | |
| CTGCCCTATATTTGATGTAC+AGG | + | chr7.4:94238393-94238412 | MS.gene97790:intron | 40.0% | |
| GACTATGAGGATCAAAGCAA+AGG | - | chr7.4:94238909-94238928 | None:intergenic | 40.0% | |
| GTACATACCACAATGCTTAG+TGG | - | chr7.4:94239016-94239035 | None:intergenic | 40.0% | |
| GTTCAAAGTGAGGAACCTAT+TGG | + | chr7.4:94239693-94239712 | MS.gene97790:CDS | 40.0% | |
| TGCAATCTATAGGAATGGTG+GGG | + | chr7.4:94239548-94239567 | MS.gene97790:CDS | 40.0% | |
| TGCATAGTACAACCAAAGCA+TGG | - | chr7.4:94238623-94238642 | None:intergenic | 40.0% | |
| TGCTGCTGTATGCAATCTAT+AGG | + | chr7.4:94239538-94239557 | MS.gene97790:CDS | 40.0% | |
| TTACTTTCGGCAATGAACGT+GGG | + | chr7.4:94238881-94238900 | MS.gene97790:CDS | 40.0% | |
| ! | GAACAAGGGTGATGATAATG+AGG | + | chr7.4:94239665-94239684 | MS.gene97790:CDS | 40.0% |
| !! | CATTTCGTTCTTGGTGTTCT+TGG | + | chr7.4:94238422-94238441 | MS.gene97790:CDS | 40.0% |
| CACAAACCCATCCAAGAACT+TGG | - | chr7.4:94238964-94238983 | None:intergenic | 45.0% | |
| CAGCAATGCATATGTCCTTG+AGG | - | chr7.4:94239233-94239252 | None:intergenic | 45.0% | |
| CGGCATAGTTAGTGACTATG+AGG | - | chr7.4:94238922-94238941 | None:intergenic | 45.0% | |
| CTATGCACCAAGAGATGCAA+GGG | + | chr7.4:94238729-94238748 | MS.gene97790:CDS | 45.0% | |
| CTTTGTTCAGCTCCATGCTT+TGG | + | chr7.4:94238608-94238627 | MS.gene97790:CDS | 45.0% | |
| TACTTTCGGCAATGAACGTG+GGG | + | chr7.4:94238882-94238901 | MS.gene97790:CDS | 45.0% | |
| TCACATTGAGTGCCACAATG+TGG | + | chr7.4:94239190-94239209 | MS.gene97790:CDS | 45.0% | |
| TCGTGTCCAAGTTCTTGGAT+GGG | + | chr7.4:94238955-94238974 | MS.gene97790:CDS | 45.0% | |
| TCTATGCACCAAGAGATGCA+AGG | + | chr7.4:94238728-94238747 | MS.gene97790:CDS | 45.0% | |
| TGGAGCTGAACAAAGCTACT+AGG | - | chr7.4:94238603-94238622 | None:intergenic | 45.0% | |
| TTCGTGTCCAAGTTCTTGGA+TGG | + | chr7.4:94238954-94238973 | MS.gene97790:CDS | 45.0% | |
| TTGAGTGCCACAATGTGGTT+TGG | + | chr7.4:94239195-94239214 | MS.gene97790:CDS | 45.0% | |
| ! | GCTTTTACCTTTGGCATGCT+TGG | + | chr7.4:94237932-94237951 | MS.gene97790:CDS | 45.0% |
| ! | GTTACTTTCGGCAATGAACG+TGG | + | chr7.4:94238880-94238899 | MS.gene97790:CDS | 45.0% |
| !! | AGCCAAAGTGTTGTGACTGA+TGG | - | chr7.4:94237915-94237934 | None:intergenic | 45.0% |
| !! | ATAATTAAATTGAAAATATA+TGG | - | chr7.4:94238139-94238158 | None:intergenic | 5.0% |
| ACCGTAGCCAAACCACATTG+TGG | - | chr7.4:94239205-94239224 | None:intergenic | 50.0% | |
| CCAAGAACTTGGACACGAAG+TGG | - | chr7.4:94238953-94238972 | None:intergenic | 50.0% | |
| CCACTTCGTGTCCAAGTTCT+TGG | + | chr7.4:94238950-94238969 | MS.gene97790:CDS | 50.0% | |
| GGCCATCAGTCACAACACTT+TGG | + | chr7.4:94237910-94237929 | MS.gene97790:CDS | 50.0% | |
| GTACGTACCAAGCATGCCAA+AGG | - | chr7.4:94237942-94237961 | None:intergenic | 50.0% | |
| GTCACTAACTATGCCGTGCA+TGG | + | chr7.4:94238926-94238945 | MS.gene97790:CDS | 50.0% | |
| GTGCAGCTCCCAAATGTGTT+GGG | + | chr7.4:94239492-94239511 | MS.gene97790:intron | 50.0% | |
| TGTGCAGCTCCCAAATGTGT+TGG | + | chr7.4:94239491-94239510 | MS.gene97790:intron | 50.0% | |
| ! | GCCACAATGTGGTTTGGCTA+CGG | + | chr7.4:94239201-94239220 | MS.gene97790:CDS | 50.0% |
| ! | TGCAGCACCACTAAGCATTG+TGG | + | chr7.4:94239006-94239025 | MS.gene97790:CDS | 50.0% |
| !! | AGTGAGGAACCTATTGGCTC+TGG | + | chr7.4:94239699-94239718 | MS.gene97790:CDS | 50.0% |
| GACACGAAGTGGACCATGCA+CGG | - | chr7.4:94238942-94238961 | None:intergenic | 55.0% | |
| TGGCTACGGTCTCTTCCTCA+AGG | + | chr7.4:94239215-94239234 | MS.gene97790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 94237908 | 94239728 | 94237908 | ID=MS.gene97790 |
| chr7.4 | mRNA | 94237908 | 94239728 | 94237908 | ID=MS.gene97790.t1;Parent=MS.gene97790 |
| chr7.4 | exon | 94237908 | 94237953 | 94237908 | ID=MS.gene97790.t1.exon1;Parent=MS.gene97790.t1 |
| chr7.4 | CDS | 94237908 | 94237953 | 94237908 | ID=cds.MS.gene97790.t1;Parent=MS.gene97790.t1 |
| chr7.4 | exon | 94238415 | 94238451 | 94238415 | ID=MS.gene97790.t1.exon2;Parent=MS.gene97790.t1 |
| chr7.4 | CDS | 94238415 | 94238451 | 94238415 | ID=cds.MS.gene97790.t1;Parent=MS.gene97790.t1 |
| chr7.4 | exon | 94238540 | 94238750 | 94238540 | ID=MS.gene97790.t1.exon3;Parent=MS.gene97790.t1 |
| chr7.4 | CDS | 94238540 | 94238750 | 94238540 | ID=cds.MS.gene97790.t1;Parent=MS.gene97790.t1 |
| chr7.4 | exon | 94238866 | 94239027 | 94238866 | ID=MS.gene97790.t1.exon4;Parent=MS.gene97790.t1 |
| chr7.4 | CDS | 94238866 | 94239027 | 94238866 | ID=cds.MS.gene97790.t1;Parent=MS.gene97790.t1 |
| chr7.4 | exon | 94239132 | 94239251 | 94239132 | ID=MS.gene97790.t1.exon5;Parent=MS.gene97790.t1 |
| chr7.4 | CDS | 94239132 | 94239251 | 94239132 | ID=cds.MS.gene97790.t1;Parent=MS.gene97790.t1 |
| chr7.4 | exon | 94239498 | 94239728 | 94239498 | ID=MS.gene97790.t1.exon6;Parent=MS.gene97790.t1 |
| chr7.4 | CDS | 94239498 | 94239728 | 94239498 | ID=cds.MS.gene97790.t1;Parent=MS.gene97790.t1 |
| Gene Sequence |
| Protein sequence |
