Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98121.t1 | XP_003604114.1 | 98.6 | 642 | 8 | 1 | 1 | 641 | 1 | 642 | 0.00E+00 | 1257.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98121.t1 | Q9LJE5 | 40.6 | 554 | 260 | 14 | 59 | 560 | 72 | 608 | 3.7e-93 | 344.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98121.t1 | G7JUF0 | 98.6 | 642 | 8 | 1 | 1 | 641 | 1 | 642 | 0.0e+00 | 1257.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049599 | MS.gene98121 | 0.836676 | 8.14E-57 | -1.69E-46 |
MS.gene049758 | MS.gene98121 | -0.820397 | 7.01E-53 | -1.69E-46 |
MS.gene050227 | MS.gene98121 | -0.804277 | 2.33E-49 | -1.69E-46 |
MS.gene050330 | MS.gene98121 | 0.87547 | 3.00E-68 | -1.69E-46 |
MS.gene050438 | MS.gene98121 | -0.801183 | 1.02E-48 | -1.69E-46 |
MS.gene050558 | MS.gene98121 | -0.830515 | 2.81E-55 | -1.69E-46 |
MS.gene050787 | MS.gene98121 | -0.804059 | 2.59E-49 | -1.69E-46 |
MS.gene050815 | MS.gene98121 | -0.815674 | 8.19E-52 | -1.69E-46 |
MS.gene050820 | MS.gene98121 | -0.804618 | 1.98E-49 | -1.69E-46 |
MS.gene05119 | MS.gene98121 | 0.828184 | 1.04E-54 | -1.69E-46 |
MS.gene052176 | MS.gene98121 | -0.838443 | 2.87E-57 | -1.69E-46 |
MS.gene052302 | MS.gene98121 | -0.816703 | 4.82E-52 | -1.69E-46 |
MS.gene052309 | MS.gene98121 | 0.854101 | 1.54E-61 | -1.69E-46 |
MS.gene052358 | MS.gene98121 | 0.872353 | 3.40E-67 | -1.69E-46 |
MS.gene052361 | MS.gene98121 | 0.840767 | 7.13E-58 | -1.69E-46 |
MS.gene052376 | MS.gene98121 | -0.821117 | 4.79E-53 | -1.69E-46 |
MS.gene053054 | MS.gene98121 | 0.806205 | 9.21E-50 | -1.69E-46 |
MS.gene053836 | MS.gene98121 | -0.816967 | 4.21E-52 | -1.69E-46 |
MS.gene054667 | MS.gene98121 | -0.821676 | 3.56E-53 | -1.69E-46 |
MS.gene056069 | MS.gene98121 | 0.877755 | 4.87E-69 | -1.69E-46 |
MS.gene057260 | MS.gene98121 | -0.857222 | 1.89E-62 | -1.69E-46 |
MS.gene058182 | MS.gene98121 | -0.823532 | 1.32E-53 | -1.69E-46 |
MS.gene058906 | MS.gene98121 | -0.819458 | 1.15E-52 | -1.69E-46 |
MS.gene059033 | MS.gene98121 | 0.830395 | 3.01E-55 | -1.69E-46 |
MS.gene059789 | MS.gene98121 | -0.807697 | 4.45E-50 | -1.69E-46 |
MS.gene060165 | MS.gene98121 | -0.805881 | 1.08E-49 | -1.69E-46 |
MS.gene060619 | MS.gene98121 | -0.825229 | 5.25E-54 | -1.69E-46 |
MS.gene061040 | MS.gene98121 | 0.836677 | 8.13E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98121.t1 | MTR_4g005110 | 98.598 | 642 | 8 | 1 | 1 | 641 | 1 | 642 | 0.0 | 1292 |
MS.gene98121.t1 | MTR_8g088390 | 42.940 | 517 | 241 | 18 | 82 | 562 | 26 | 524 | 1.68e-115 | 358 |
MS.gene98121.t1 | MTR_8g088390 | 42.940 | 517 | 241 | 18 | 82 | 562 | 91 | 589 | 4.75e-115 | 359 |
MS.gene98121.t1 | MTR_4g123630 | 41.588 | 529 | 250 | 16 | 54 | 560 | 11 | 502 | 1.94e-100 | 320 |
MS.gene98121.t1 | MTR_2g032660 | 40.347 | 518 | 271 | 16 | 54 | 560 | 46 | 536 | 1.14e-95 | 309 |
MS.gene98121.t1 | MTR_2g063460 | 65.487 | 226 | 72 | 2 | 340 | 561 | 322 | 545 | 1.20e-95 | 306 |
MS.gene98121.t1 | MTR_2g063460 | 65.487 | 226 | 72 | 2 | 340 | 561 | 320 | 543 | 1.38e-95 | 305 |
MS.gene98121.t1 | MTR_7g085500 | 39.483 | 542 | 242 | 17 | 83 | 562 | 79 | 596 | 7.04e-95 | 306 |
MS.gene98121.t1 | MTR_6g032970 | 47.289 | 332 | 143 | 7 | 252 | 564 | 254 | 572 | 8.89e-86 | 281 |
MS.gene98121.t1 | MTR_2g005840 | 49.027 | 257 | 109 | 5 | 309 | 561 | 184 | 422 | 2.01e-71 | 239 |
MS.gene98121.t1 | MTR_2g005840 | 49.027 | 257 | 109 | 5 | 309 | 561 | 215 | 453 | 9.65e-71 | 238 |
MS.gene98121.t1 | MTR_2g029540 | 26.316 | 152 | 101 | 3 | 394 | 541 | 259 | 403 | 4.15e-12 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98121.t1 | AT3G13060 | 56.610 | 590 | 222 | 16 | 36 | 610 | 46 | 616 | 0.0 | 626 |
MS.gene98121.t1 | AT3G13060 | 56.610 | 590 | 222 | 16 | 36 | 610 | 36 | 606 | 0.0 | 626 |
MS.gene98121.t1 | AT3G13060 | 56.610 | 590 | 222 | 16 | 36 | 610 | 24 | 594 | 0.0 | 625 |
MS.gene98121.t1 | AT3G13060 | 56.610 | 590 | 222 | 16 | 36 | 610 | 24 | 594 | 0.0 | 625 |
MS.gene98121.t1 | AT3G13060 | 55.490 | 510 | 195 | 14 | 36 | 532 | 46 | 536 | 2.37e-180 | 523 |
MS.gene98121.t1 | AT3G13060 | 50.704 | 426 | 178 | 14 | 36 | 448 | 46 | 452 | 1.39e-123 | 374 |
MS.gene98121.t1 | AT3G13460 | 40.608 | 559 | 257 | 16 | 58 | 561 | 70 | 608 | 2.16e-116 | 362 |
MS.gene98121.t1 | AT3G13460 | 40.608 | 559 | 257 | 16 | 58 | 561 | 71 | 609 | 2.37e-116 | 362 |
MS.gene98121.t1 | AT3G13460 | 40.608 | 559 | 257 | 16 | 58 | 561 | 68 | 606 | 2.48e-116 | 362 |
MS.gene98121.t1 | AT1G55500 | 41.420 | 507 | 244 | 16 | 85 | 556 | 45 | 533 | 1.22e-105 | 331 |
MS.gene98121.t1 | AT1G55500 | 42.032 | 502 | 248 | 16 | 85 | 556 | 88 | 576 | 2.11e-105 | 332 |
MS.gene98121.t1 | AT1G55500 | 42.032 | 502 | 248 | 16 | 85 | 556 | 88 | 576 | 2.29e-105 | 332 |
MS.gene98121.t1 | AT1G55500 | 42.032 | 502 | 248 | 16 | 85 | 556 | 88 | 576 | 3.42e-105 | 331 |
MS.gene98121.t1 | AT1G55500 | 41.942 | 484 | 239 | 15 | 103 | 556 | 49 | 520 | 1.22e-100 | 318 |
MS.gene98121.t1 | AT1G55500 | 41.942 | 484 | 239 | 15 | 103 | 556 | 92 | 563 | 2.58e-100 | 318 |
MS.gene98121.t1 | AT1G27960 | 57.249 | 269 | 100 | 3 | 332 | 600 | 207 | 460 | 2.64e-99 | 311 |
MS.gene98121.t1 | AT1G27960 | 57.621 | 269 | 99 | 3 | 332 | 600 | 281 | 534 | 2.53e-98 | 311 |
MS.gene98121.t1 | AT3G17330 | 39.627 | 482 | 226 | 13 | 86 | 560 | 17 | 440 | 5.96e-96 | 307 |
MS.gene98121.t1 | AT3G17330 | 39.627 | 482 | 226 | 13 | 86 | 560 | 17 | 440 | 5.96e-96 | 307 |
MS.gene98121.t1 | AT5G58190 | 39.526 | 506 | 211 | 14 | 75 | 564 | 79 | 505 | 8.63e-93 | 296 |
MS.gene98121.t1 | AT5G58190 | 39.526 | 506 | 211 | 14 | 75 | 564 | 80 | 506 | 1.04e-92 | 296 |
MS.gene98121.t1 | AT5G61020 | 58.159 | 239 | 76 | 3 | 339 | 561 | 196 | 426 | 1.12e-90 | 290 |
MS.gene98121.t1 | AT5G61020 | 58.159 | 239 | 76 | 3 | 339 | 561 | 198 | 428 | 1.36e-90 | 290 |
MS.gene98121.t1 | AT3G17330 | 59.641 | 223 | 85 | 2 | 343 | 560 | 116 | 338 | 1.71e-89 | 287 |
MS.gene98121.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 355 | 560 | 261 | 476 | 8.44e-86 | 278 |
MS.gene98121.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 355 | 560 | 261 | 476 | 8.44e-86 | 278 |
MS.gene98121.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 355 | 560 | 261 | 476 | 8.44e-86 | 278 |
MS.gene98121.t1 | AT1G79270 | 60.648 | 216 | 75 | 3 | 355 | 560 | 276 | 491 | 1.46e-85 | 278 |
MS.gene98121.t1 | AT3G03950 | 54.357 | 241 | 104 | 2 | 326 | 566 | 179 | 413 | 4.82e-85 | 273 |
MS.gene98121.t1 | AT3G03950 | 54.357 | 241 | 104 | 2 | 326 | 566 | 180 | 414 | 5.82e-85 | 273 |
MS.gene98121.t1 | AT3G03950 | 54.357 | 241 | 104 | 2 | 326 | 566 | 183 | 417 | 5.89e-85 | 273 |
MS.gene98121.t1 | AT1G48110 | 58.407 | 226 | 89 | 2 | 340 | 560 | 266 | 491 | 1.45e-84 | 278 |
MS.gene98121.t1 | AT1G48110 | 58.407 | 226 | 89 | 2 | 340 | 560 | 266 | 491 | 1.45e-84 | 278 |
MS.gene98121.t1 | AT1G09810 | 54.701 | 234 | 99 | 4 | 336 | 565 | 134 | 364 | 4.91e-81 | 263 |
MS.gene98121.t1 | AT1G09810 | 54.701 | 234 | 99 | 4 | 336 | 565 | 176 | 406 | 6.88e-81 | 264 |
MS.gene98121.t1 | AT1G09810 | 54.701 | 234 | 99 | 4 | 336 | 565 | 157 | 387 | 7.76e-81 | 263 |
MS.gene98121.t1 | AT3G13460 | 34.081 | 446 | 219 | 16 | 58 | 448 | 71 | 496 | 3.79e-51 | 185 |
MS.gene98121.t1 | AT1G27960 | 54.237 | 118 | 41 | 2 | 332 | 449 | 281 | 385 | 8.46e-29 | 120 |
MS.gene98121.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 394 | 542 | 72 | 218 | 3.66e-16 | 81.3 |
MS.gene98121.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 394 | 542 | 72 | 218 | 6.01e-16 | 80.5 |
MS.gene98121.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 394 | 542 | 72 | 218 | 7.46e-16 | 80.5 |
MS.gene98121.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 394 | 542 | 72 | 218 | 4.54e-15 | 78.6 |
MS.gene98121.t1 | AT4G11970 | 31.169 | 154 | 94 | 3 | 394 | 542 | 72 | 218 | 4.54e-15 | 78.6 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGAGGCTCGGCCATTTC+TGG | 0.126584 | 4.1:-89470897 | MS.gene98121:CDS |
ATTGGCTCTGTCAGGTCATT+TGG | 0.209578 | 4.1:-89471691 | MS.gene98121:CDS |
ATCTGATCCTTCATGTTATC+TGG | 0.270592 | 4.1:+89477281 | None:intergenic |
ACCGGGTTTAAATACATTAC+TGG | 0.284768 | 4.1:+89468326 | None:intergenic |
TATCCTTCATATGTCAATAA+TGG | 0.290554 | 4.1:-89472297 | MS.gene98121:CDS |
ACAAGTCAGTCAGGATCTTT+TGG | 0.312127 | 4.1:-89474132 | MS.gene98121:CDS |
CAGCGATCTTTGTATGGGTT+TGG | 0.314350 | 4.1:-89470972 | MS.gene98121:CDS |
TTGACAAGAGCGTGGACTTC+TGG | 0.317782 | 4.1:-89469725 | MS.gene98121:CDS |
GAATTAAGATATGGTAAGTT+TGG | 0.318055 | 4.1:+89471985 | None:intergenic |
TTGGCTCTGTCAGGTCATTT+GGG | 0.318903 | 4.1:-89471690 | MS.gene98121:CDS |
CATCAACAGCGATCTTTGTA+TGG | 0.319503 | 4.1:-89470978 | MS.gene98121:CDS |
GTAAGCTCTGGCTGAGAAAC+TGG | 0.323636 | 4.1:+89471955 | None:intergenic |
CCTCTGCCTTTCTGAAGGTT+TGG | 0.326875 | 4.1:+89471753 | None:intergenic |
ATCCTTCATATGTCAATAAT+GGG | 0.329319 | 4.1:-89472296 | MS.gene98121:CDS |
CAGGCCCAGGCTTTCTACTA+TGG | 0.343254 | 4.1:-89474063 | MS.gene98121:CDS |
TCTAACCCCGGTTCTAGCTT+TGG | 0.348886 | 4.1:-89470915 | MS.gene98121:CDS |
CATCTTGTTTCTCCTTTGCT+TGG | 0.349280 | 4.1:+89470508 | None:intergenic |
TCAACAGTCTTGCCACTAAC+TGG | 0.357017 | 4.1:+89468269 | None:intergenic |
GAAGGCAAAGGCGAGGTAAC+CGG | 0.360735 | 4.1:+89472087 | None:intergenic |
GCCTGGGGCGCATACACATT+GGG | 0.372689 | 4.1:+89474081 | None:intergenic |
AGAGCATTAAATATGGTGTC+TGG | 0.382981 | 4.1:-89470575 | MS.gene98121:CDS |
TTGAAATCAGTGGCAAAATC+TGG | 0.385317 | 4.1:+89470648 | None:intergenic |
GGCGAGGTAACCGGGGAATA+TGG | 0.385914 | 4.1:+89472096 | None:intergenic |
GAATCTCAACAAGGATTTGA+TGG | 0.390754 | 4.1:-89471808 | MS.gene98121:CDS |
TTGTAATAAGGTGGGGTGTA+TGG | 0.390994 | 4.1:+89472024 | None:intergenic |
CATAGTAGAAAGCCTGGGCC+TGG | 0.397210 | 4.1:+89474064 | None:intergenic |
GGAACCAGATGGTTGTAATA+AGG | 0.400527 | 4.1:+89472012 | None:intergenic |
GTTCATAAGAGCATTAAATA+TGG | 0.400693 | 4.1:-89470582 | MS.gene98121:CDS |
TCTAACTTCCTGTTTCCATT+TGG | 0.400771 | 4.1:+89470543 | None:intergenic |
TCTGAAAATAACGCTATTGA+TGG | 0.400801 | 4.1:-89470723 | MS.gene98121:CDS |
CTGCCTTTCTGAAGGTTTGG+AGG | 0.400845 | 4.1:+89471756 | None:intergenic |
CGAGCCTCCAAAGCTAGAAC+CGG | 0.407892 | 4.1:+89470908 | None:intergenic |
GGATCCGGTTCAAACCCTTA+TGG | 0.407920 | 4.1:-89470951 | MS.gene98121:CDS |
CCTTGCCTTTCGTTCTTGCA+TGG | 0.410423 | 4.1:+89468530 | None:intergenic |
TCTGTTCCTCAACAGCCAAT+TGG | 0.412741 | 4.1:-89471709 | MS.gene98121:CDS |
CTGGCCTTAGTGCTAATGAT+AGG | 0.414141 | 4.1:-89470878 | MS.gene98121:CDS |
AGGAGGCTGTGATGGTGGTT+GGG | 0.419576 | 4.1:+89477606 | None:intergenic |
CTGAAGGAACCAGGGGCTAC+AGG | 0.423084 | 4.1:+89471838 | None:intergenic |
GAGGAGGCTGTGATGGTGGT+TGG | 0.428984 | 4.1:+89477605 | None:intergenic |
TAATGCCTACTGGATTAGTT+GGG | 0.430213 | 4.1:-89468494 | MS.gene98121:CDS |
TCTTTGTATGGGTTTGGATC+CGG | 0.431719 | 4.1:-89470966 | MS.gene98121:CDS |
ATAATGCCTACTGGATTAGT+TGG | 0.431965 | 4.1:-89468495 | MS.gene98121:CDS |
TATGGTCCATATGGCATTTG+TGG | 0.432804 | 4.1:+89472114 | None:intergenic |
AACAGCCAATTGGCTCTGTC+AGG | 0.440837 | 4.1:-89471699 | MS.gene98121:CDS |
CCTCGCCTTTGCCTTCTGTA+GGG | 0.441420 | 4.1:-89472080 | MS.gene98121:CDS |
CGGTTCTAGCTTTGGAGGCT+CGG | 0.441575 | 4.1:-89470907 | MS.gene98121:CDS |
TGTGTATGCGCCCCAGGCCC+AGG | 0.443438 | 4.1:-89474076 | MS.gene98121:CDS |
AAAATAGCAGACGGCACGGC+AGG | 0.444683 | 4.1:-89470839 | MS.gene98121:CDS |
CTTCAACGCAAACCAGTTAG+TGG | 0.448154 | 4.1:-89468281 | None:intergenic |
AAGGCAAAGGCGAGGTAACC+GGG | 0.449724 | 4.1:+89472088 | None:intergenic |
ATAGTAGAAAGCCTGGGCCT+GGG | 0.451236 | 4.1:+89474065 | None:intergenic |
GCCGGTTGAGTGATTCATCT+TGG | 0.454411 | 4.1:+89470670 | None:intergenic |
AGGTCATTTGGGCTGAGTGC+TGG | 0.455482 | 4.1:-89471679 | MS.gene98121:CDS |
CGGGATATCACAAGTCAGTC+AGG | 0.458558 | 4.1:-89474141 | MS.gene98121:CDS |
GAGAGATAGCCTCTACCATA+AGG | 0.461221 | 4.1:+89470936 | None:intergenic |
CTAGTACACCAAATGGAAAC+AGG | 0.461821 | 4.1:-89470551 | MS.gene98121:CDS |
ATTAGCACTAAGGCCAGAAA+TGG | 0.464972 | 4.1:+89470884 | None:intergenic |
GTATCTCGACTGTTGGTAAC+GGG | 0.473588 | 4.1:+89469597 | None:intergenic |
CTTGCTGGTCAATGCCTAGC+AGG | 0.474459 | 4.1:+89471929 | None:intergenic |
GGCCTGGGGCGCATACACAT+TGG | 0.475157 | 4.1:+89474080 | None:intergenic |
ACCGGGGAATATGGTCCATA+TGG | 0.476074 | 4.1:+89472105 | None:intergenic |
GCTTTGAAGCCCTTGGTCCT+CGG | 0.478289 | 4.1:+89470763 | None:intergenic |
CCCACCTTATTACAACCATC+TGG | 0.479406 | 4.1:-89472016 | MS.gene98121:CDS |
ATGTGACGAAACTGACTGTT+CGG | 0.481473 | 4.1:+89469645 | None:intergenic |
CAAAGTAGCATAATGCCTAC+TGG | 0.481769 | 4.1:-89468504 | MS.gene98121:CDS |
ATTTGGGCTGAGTGCTGGAA+TGG | 0.481872 | 4.1:-89471674 | MS.gene98121:intron |
TCCAAGATGAATCACTCAAC+CGG | 0.484917 | 4.1:-89470671 | MS.gene98121:CDS |
AACCCCGGTTCTAGCTTTGG+AGG | 0.486883 | 4.1:-89470912 | MS.gene98121:CDS |
TTTATTATGTGCCACTTCAC+AGG | 0.487446 | 4.1:+89469675 | None:intergenic |
GGATTTGATGGATCAAGATC+TGG | 0.492200 | 4.1:-89471796 | MS.gene98121:CDS |
TCCCAATGTGTATGCGCCCC+AGG | 0.493594 | 4.1:-89474082 | MS.gene98121:CDS |
GTCTGGGCTAGTACACCAAA+TGG | 0.493633 | 4.1:-89470558 | MS.gene98121:CDS |
ACCTCGCCTTTGCCTTCTGT+AGG | 0.494810 | 4.1:-89472081 | MS.gene98121:CDS |
TTGACAATGGCAATGGCGAA+TGG | 0.496628 | 4.1:-89472326 | MS.gene98121:CDS |
TCATGAAAGCTGAAGGAACC+AGG | 0.496773 | 4.1:+89471829 | None:intergenic |
GTTCTGCGGAGTAGCTGAAA+TGG | 0.500293 | 4.1:-89469763 | MS.gene98121:CDS |
AACCTCCATAGTAGAAAGCC+TGG | 0.500391 | 4.1:+89474058 | None:intergenic |
AGTATCTCGACTGTTGGTAA+CGG | 0.502066 | 4.1:+89469596 | None:intergenic |
AGAGATAGCCTCTACCATAA+GGG | 0.503704 | 4.1:+89470937 | None:intergenic |
TGAAACTGATACGTCTATCC+TGG | 0.503740 | 4.1:-89468586 | MS.gene98121:CDS |
GAGTGATTCATCTTGGAACT+TGG | 0.506959 | 4.1:+89470677 | None:intergenic |
GGAAGCTTTCCTGTAGCCCC+TGG | 0.507011 | 4.1:-89471847 | MS.gene98121:CDS |
GGAGTCGGTGAATTAAGATA+TGG | 0.508399 | 4.1:+89471976 | None:intergenic |
CCTAGCAGGTTAGTAAGCTC+TGG | 0.512997 | 4.1:+89471943 | None:intergenic |
CGATCAAGAGGAGGCTGTGA+TGG | 0.513546 | 4.1:+89477598 | None:intergenic |
CTCGCCTTTGCCTTCTGTAG+GGG | 0.514641 | 4.1:-89472079 | MS.gene98121:CDS |
TTAAGATATGGTAAGTTTGG+AGG | 0.518703 | 4.1:+89471988 | None:intergenic |
CATATCCAGAATGGAAAACA+AGG | 0.521585 | 4.1:+89472145 | None:intergenic |
ATCAACAGCGATCTTTGTAT+GGG | 0.525990 | 4.1:-89470977 | MS.gene98121:CDS |
TGAGGAACAGAAGGAGATAG+AGG | 0.527342 | 4.1:+89471721 | None:intergenic |
ATGGTCCATATGGCATTTGT+GGG | 0.529252 | 4.1:+89472115 | None:intergenic |
TTCAACCCACAAATGCCATA+TGG | 0.532099 | 4.1:-89472120 | MS.gene98121:CDS |
AGCTCCTATCATTAGCACTA+AGG | 0.532391 | 4.1:+89470874 | None:intergenic |
GATCAAGATCTGGTGGACTC+TGG | 0.533103 | 4.1:-89471786 | MS.gene98121:CDS |
ACGGAAGGATAGCTTGCTCT+TGG | 0.533542 | 4.1:+89471886 | None:intergenic |
AGAGGGTAACTTATCTCTGT+TGG | 0.537486 | 4.1:+89468359 | None:intergenic |
AGTCACTAAAATGCCTTCAC+CGG | 0.539918 | 4.1:+89468308 | None:intergenic |
CAACAACTATAGGTCATTCA+CGG | 0.541211 | 4.1:-89474161 | MS.gene98121:CDS |
AGATATGGTAAGTTTGGAGG+AGG | 0.541244 | 4.1:+89471991 | None:intergenic |
AATGACCTGACAGAGCCAAT+TGG | 0.541718 | 4.1:+89471694 | None:intergenic |
TCCCAGGGTACAACAACTAT+AGG | 0.542511 | 4.1:-89474171 | MS.gene98121:intron |
CTAACTGGTTTGCGTTGAAG+AGG | 0.542548 | 4.1:+89468284 | None:intergenic |
GTCACTAAAATGCCTTCACC+GGG | 0.543120 | 4.1:+89468309 | None:intergenic |
CATAGAAATCAAAATCATCC+AGG | 0.544656 | 4.1:+89468568 | None:intergenic |
TGACAATGGCAATGGCGAAT+GGG | 0.545833 | 4.1:-89472325 | MS.gene98121:CDS |
GAGCATTAAATATGGTGTCT+GGG | 0.546855 | 4.1:-89470574 | MS.gene98121:CDS |
AAAGACCTCTGCCTTTCTGA+AGG | 0.547378 | 4.1:+89471748 | None:intergenic |
TAGTAGAAAGCCTGGGCCTG+GGG | 0.547553 | 4.1:+89474066 | None:intergenic |
TTGAGATTCATGAAAGCTGA+AGG | 0.548335 | 4.1:+89471822 | None:intergenic |
AGGAGTTCTTCTGACAGTAC+TGG | 0.550086 | 4.1:-89468459 | MS.gene98121:CDS |
ACGCTCTTGTCAAAATTGAC+AGG | 0.553986 | 4.1:+89469735 | None:intergenic |
ACCAGATGGTTGTAATAAGG+TGG | 0.555442 | 4.1:+89472015 | None:intergenic |
AGAGCAAGCTATCCTTCCGT+TGG | 0.557743 | 4.1:-89471883 | MS.gene98121:CDS |
GGTTCAAACCCTTATGGTAG+AGG | 0.558356 | 4.1:-89470945 | MS.gene98121:CDS |
GAGCCTCCAAAGCTAGAACC+GGG | 0.562520 | 4.1:+89470909 | None:intergenic |
TCGCCTTTGCCTTCTGTAGG+GGG | 0.562582 | 4.1:-89472078 | MS.gene98121:CDS |
CCAGATGGTTGTAATAAGGT+GGG | 0.563318 | 4.1:+89472016 | None:intergenic |
GAAGGCCATGCAAGAACGAA+AGG | 0.564589 | 4.1:-89468535 | MS.gene98121:CDS |
TCTACCATAAGGGTTTGAAC+CGG | 0.565189 | 4.1:+89470947 | None:intergenic |
CCTCTTGATCGTCCCACCAC+AGG | 0.566829 | 4.1:-89477586 | MS.gene98121:intron |
TTCAGGTGAAATTGCAACAA+GGG | 0.568232 | 4.1:-89468638 | MS.gene98121:intron |
TACCAACAGTCGAGATACTC+AGG | 0.568743 | 4.1:-89469592 | MS.gene98121:CDS |
GGTTTAAATACATTACTGGT+GGG | 0.569305 | 4.1:+89468330 | None:intergenic |
TCCTCTAGCAAAAGATCCAA+CGG | 0.572325 | 4.1:+89471867 | None:intergenic |
AACAACTATAGGTCATTCAC+GGG | 0.573388 | 4.1:-89474160 | MS.gene98121:CDS |
GGGTTTAAATACATTACTGG+TGG | 0.576335 | 4.1:+89468329 | None:intergenic |
GGTTGAAGCCATATCCAGAA+TGG | 0.576400 | 4.1:+89472136 | None:intergenic |
CCAAACCTTCAGAAAGGCAG+AGG | 0.578069 | 4.1:-89471753 | MS.gene98121:CDS |
GGCAGCAAGATAAGTGGAGT+GGG | 0.578602 | 4.1:-89469704 | MS.gene98121:CDS |
GTTGAATTACGTACCTGTGG+TGG | 0.578980 | 4.1:+89477573 | None:intergenic |
AATGTATTTAAACCCGGTGA+AGG | 0.581610 | 4.1:-89468321 | MS.gene98121:CDS |
ACTTCTGGCAGCAAGATAAG+TGG | 0.581969 | 4.1:-89469710 | MS.gene98121:CDS |
CGTTATTGTTGTCGTCCAAG+CGG | 0.588897 | 4.1:+89468394 | None:intergenic |
GGGTGTATGGAAATTGCTGA+GGG | 0.592173 | 4.1:+89472037 | None:intergenic |
ACAGAGCCAATTGGCTGTTG+AGG | 0.593080 | 4.1:+89471703 | None:intergenic |
ATTGGCTGTTGAGGAACAGA+AGG | 0.595584 | 4.1:+89471712 | None:intergenic |
CTCCTGAGTATCTCGACTGT+TGG | 0.599567 | 4.1:+89469590 | None:intergenic |
AAGATCTGGTGGACTCTGGT+CGG | 0.599715 | 4.1:-89471782 | MS.gene98121:CDS |
GCCATATGGACCATATTCCC+CGG | 0.599829 | 4.1:-89472106 | MS.gene98121:CDS |
TGCTGCATATTGCCAAGCAA+AGG | 0.601148 | 4.1:-89470520 | MS.gene98121:CDS |
GTGAGCAAAACCGAGGACCA+AGG | 0.601850 | 4.1:-89470773 | MS.gene98121:CDS |
TGCGGAGTAGCTGAAATGGT+TGG | 0.602747 | 4.1:-89469759 | MS.gene98121:CDS |
GCCCAGGCTTTCTACTATGG+AGG | 0.604151 | 4.1:-89474060 | MS.gene98121:intron |
TTTCTATGAAGATCGGCAGA+AGG | 0.604380 | 4.1:-89468553 | MS.gene98121:CDS |
GTGGGCAGTTTCCTGTGAAG+TGG | 0.604937 | 4.1:-89469686 | MS.gene98121:CDS |
CCAGAGCTTACTAACCTGCT+AGG | 0.605573 | 4.1:-89471943 | MS.gene98121:CDS |
AATGCCTACTGGATTAGTTG+GGG | 0.605874 | 4.1:-89468493 | MS.gene98121:CDS |
CCATGCAAGAACGAAAGGCA+AGG | 0.609460 | 4.1:-89468530 | MS.gene98121:CDS |
TGAGCAAAACCGAGGACCAA+GGG | 0.610520 | 4.1:-89470772 | MS.gene98121:CDS |
AATGCTAGTGCTCAGTTCTG+CGG | 0.610616 | 4.1:-89469777 | MS.gene98121:CDS |
TTGAATTACGTACCTGTGGT+GGG | 0.611243 | 4.1:+89477574 | None:intergenic |
ATTCCTCCAAACCTTCAGAA+AGG | 0.611580 | 4.1:-89471759 | MS.gene98121:CDS |
ACCTCCATAGTAGAAAGCCT+GGG | 0.612346 | 4.1:+89474059 | None:intergenic |
TGCCTACTGGATTAGTTGGG+GGG | 0.613757 | 4.1:-89468491 | MS.gene98121:CDS |
AGAGGCTATCTCTCTAACCC+CGG | 0.614586 | 4.1:-89470927 | MS.gene98121:CDS |
CTTGGCATCCTTGAAATCAG+TGG | 0.615695 | 4.1:+89470638 | None:intergenic |
GGGGTGTATGGAAATTGCTG+AGG | 0.615889 | 4.1:+89472036 | None:intergenic |
TGGGGCGCATACACATTGGG+AGG | 0.616262 | 4.1:+89474084 | None:intergenic |
TTTCTCTTGAAAATAGCAGA+CGG | 0.616582 | 4.1:-89470848 | MS.gene98121:CDS |
TTACTGGTGGGAACATCAGA+GGG | 0.616730 | 4.1:+89468342 | None:intergenic |
CCTGTGGTGGGACGATCAAG+AGG | 0.618602 | 4.1:+89477586 | None:intergenic |
AAATAGCAGACGGCACGGCA+GGG | 0.619949 | 4.1:-89470838 | MS.gene98121:CDS |
ATTACTGGTGGGAACATCAG+AGG | 0.620253 | 4.1:+89468341 | None:intergenic |
AGCTTTCATGAATCTCAACA+AGG | 0.620909 | 4.1:-89471817 | MS.gene98121:CDS |
AATCAGTGGCAAAATCTGGC+CGG | 0.622969 | 4.1:+89470652 | None:intergenic |
TAACATGAAGGATCAGATTG+TGG | 0.625767 | 4.1:-89477276 | MS.gene98121:intron |
CTAGCAAAAGATCCAACGGA+AGG | 0.626823 | 4.1:+89471871 | None:intergenic |
ACCAGTAATGTATTTAAACC+CGG | 0.627473 | 4.1:-89468327 | MS.gene98121:CDS |
AACTCAACCAGATAACATGA+AGG | 0.628484 | 4.1:-89477288 | MS.gene98121:CDS |
TCTGGCTGAGAAACTGGAGT+CGG | 0.633808 | 4.1:+89471961 | None:intergenic |
TGGCAGCAAGATAAGTGGAG+TGG | 0.635971 | 4.1:-89469705 | MS.gene98121:CDS |
TCCTTCATATGTCAATAATG+GGG | 0.636508 | 4.1:-89472295 | MS.gene98121:CDS |
TTTGATGGATCAAGATCTGG+TGG | 0.636647 | 4.1:-89471793 | MS.gene98121:CDS |
CCTTCATATGTCAATAATGG+GGG | 0.641399 | 4.1:-89472294 | MS.gene98121:CDS |
CTTGAAAATAGCAGACGGCA+CGG | 0.643405 | 4.1:-89470843 | MS.gene98121:CDS |
CATGAAAGCTGAAGGAACCA+GGG | 0.645158 | 4.1:+89471830 | None:intergenic |
TTTCAGGTGAAATTGCAACA+AGG | 0.653357 | 4.1:-89468639 | MS.gene98121:intron |
CCCTACAGAAGGCAAAGGCG+AGG | 0.658818 | 4.1:+89472080 | None:intergenic |
TACACATTGGGAGGGTACAG+AGG | 0.662260 | 4.1:+89474093 | None:intergenic |
ATGCCTACTGGATTAGTTGG+GGG | 0.665482 | 4.1:-89468492 | MS.gene98121:CDS |
AGCCTCCAAAGCTAGAACCG+GGG | 0.665960 | 4.1:+89470910 | None:intergenic |
GGGGCGCATACACATTGGGA+GGG | 0.671760 | 4.1:+89474085 | None:intergenic |
TCAAGAGGAGGCTGTGATGG+TGG | 0.676241 | 4.1:+89477601 | None:intergenic |
CAGATGGTTGTAATAAGGTG+GGG | 0.681497 | 4.1:+89472017 | None:intergenic |
ATGAAAGCTGAAGGAACCAG+GGG | 0.687499 | 4.1:+89471831 | None:intergenic |
ATATCCAGAATGGAAAACAA+GGG | 0.689183 | 4.1:+89472146 | None:intergenic |
AGTTTGGAGGAGGAACCAGA+TGG | 0.690239 | 4.1:+89472001 | None:intergenic |
AGGCAAAGGCGAGGTAACCG+GGG | 0.693351 | 4.1:+89472089 | None:intergenic |
GTGGTGGGACGATCAAGAGG+AGG | 0.694057 | 4.1:+89477589 | None:intergenic |
GGTGTATGGAAATTGCTGAG+GGG | 0.708381 | 4.1:+89472038 | None:intergenic |
ATCCTCAGTGAGCAAAACCG+AGG | 0.723529 | 4.1:-89470780 | MS.gene98121:CDS |
CAACAGTCGAGATACTCAGG+AGG | 0.750598 | 4.1:-89469589 | MS.gene98121:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 89468284 | 89477638 | 89468284 | ID=MS.gene98121 |
chr4.1 | mRNA | 89468284 | 89477638 | 89468284 | ID=MS.gene98121.t1;Parent=MS.gene98121 |
chr4.1 | exon | 89477587 | 89477638 | 89477587 | ID=MS.gene98121.t1.exon1;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89477587 | 89477638 | 89477587 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89477277 | 89477320 | 89477277 | ID=MS.gene98121.t1.exon2;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89477277 | 89477320 | 89477277 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89474061 | 89474187 | 89474061 | ID=MS.gene98121.t1.exon3;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89474061 | 89474187 | 89474061 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89472275 | 89472351 | 89472275 | ID=MS.gene98121.t1.exon4;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89472275 | 89472351 | 89472275 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89471675 | 89472190 | 89471675 | ID=MS.gene98121.t1.exon5;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89471675 | 89472190 | 89471675 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89470482 | 89471006 | 89470482 | ID=MS.gene98121.t1.exon6;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89470482 | 89471006 | 89470482 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89469590 | 89469802 | 89469590 | ID=MS.gene98121.t1.exon7;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89469590 | 89469802 | 89469590 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
chr4.1 | exon | 89468284 | 89468655 | 89468284 | ID=MS.gene98121.t1.exon8;Parent=MS.gene98121.t1 |
chr4.1 | CDS | 89468284 | 89468655 | 89468284 | ID=cds.MS.gene98121.t1;Parent=MS.gene98121.t1 |
Gene Sequence |
Protein sequence |