AlfalfaGEDB | MS.gene052987

M. sativa cultivar XinJiangDaYe / MS.gene052987

KEGG: K15813
GO: GO:0000250 GO:0003674 GO:0003824 GO:0005575 GO:0005811 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0031559 GO:0042300 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:0110165 GO:1901576
PFAM: PF13243.9 PF13249.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052987.t1	KEH28511.1	94.8	536	28	0	1	536	226	761	0.00E+00	1090.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052987.t1	Q9MB42	88.1	538	63	1	1	537	226	763	5.6e-300	1030.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052987.t1	A0A072UGF7	94.8	536	28	0	1	536	226	761	0.0e+00	1090.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene052987	0.811198	7.89E-51	-1.69E-46
MS.gene049285	MS.gene052987	0.801021	1.10E-48	-1.69E-46
MS.gene049320	MS.gene052987	0.809425	1.90E-50	-1.69E-46
MS.gene05010	MS.gene052987	0.80194	7.10E-49	-1.69E-46
MS.gene050170	MS.gene052987	0.80955	1.79E-50	-1.69E-46
MS.gene050323	MS.gene052987	0.828589	8.27E-55	-1.69E-46
MS.gene050577	MS.gene052987	0.801034	1.09E-48	-1.69E-46
MS.gene050612	MS.gene052987	0.804183	2.44E-49	-1.69E-46
MS.gene050747	MS.gene052987	0.803497	3.39E-49	-1.69E-46
MS.gene050772	MS.gene052987	0.809356	1.97E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene052987.t1	MTR_4g005270	94.776	536	28	0	1	536	226	761	1068
MS.gene052987.t1	MTR_4g005190	88.246	536	63	0	1	536	226	761	1003
MS.gene052987.t1	MTR_0013s0230	84.673	535	81	1	1	534	226	760	972
MS.gene052987.t1	MTR_7g034535	82.649	536	92	1	1	535	161	696	949
MS.gene052987.t1	MTR_8g016975	80.337	534	105	0	1	534	226	759	926
MS.gene052987.t1	MTR_8g017020	80.150	534	106	0	1	534	192	725	925
MS.gene052987.t1	MTR_3g436160	81.015	532	97	1	1	532	169	696	903
MS.gene052987.t1	MTR_8g016960	76.952	538	122	2	1	536	220	757	886
MS.gene052987.t1	MTR_4g005190	88.063	444	53	0	1	444	226	669	831
MS.gene052987.t1	MTR_6g093180	63.364	535	195	1	1	535	224	757	740

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene052987.t1	AT1G78955	74.812	532	134	1	532	227	758	868
MS.gene052987.t1	AT1G78955	74.812	532	134	1	532	52	583	867
MS.gene052987.t1	AT1G78955	74.812	532	134	1	532	162	693	867
MS.gene052987.t1	AT1G78950	74.436	532	136	1	532	227	758	841
MS.gene052987.t1	AT1G78950	74.436	532	136	1	532	236	767	841
MS.gene052987.t1	AT1G78960	70.076	528	158	1	528	227	754	822
MS.gene052987.t1	AT1G78960	70.076	528	158	1	528	227	754	822
MS.gene052987.t1	AT1G78960	70.076	528	158	1	528	227	754	822
MS.gene052987.t1	AT1G78960	70.076	528	158	1	528	76	603	821
MS.gene052987.t1	AT1G78955	74.648	497	126	1	497	162	658	806

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Find 141 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGGATTGGCAGCT+TGG	0.454209	4.3:-89389360	MS.gene052987:CDS
AAACTCTAACCTTTGCACAT+AGG	0.595995	4.3:+89390960	None:intergenic
AAAGGCCAGTGGGTGAGAAG+TGG	0.605928	4.3:+89390788	None:intergenic
AAATGGTGGATTGGCAGCTT+GGG	0.443691	4.3:-89389359	MS.gene052987:CDS
AAATGTTGTACAAACTGCAT+GGG	0.602539	4.3:-89388717	MS.gene052987:CDS
AAATTTCTTCTCAGAATACA+GGG	0.583280	4.3:-89388932	MS.gene052987:CDS
AAGGAAGGATCCAAAACTCA+GGG	0.579130	4.3:+89393532	None:intergenic
AATCAGAAAGTTGCCATCCT+TGG	0.500310	4.3:+89389774	None:intergenic
AATGAAACATATCCACTATG+AGG	0.543508	4.3:-89390729	MS.gene052987:CDS
AATGTGGTGTTATTGTCGGT+TGG	0.597120	4.3:-89391110	MS.gene052987:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTTGTACAAACTGCAT+GGG	-	chr4.3:89392885-89392904	MS.gene052987:intron	30.0%
AACATGGCAATTAAGCATAT+TGG	-	chr4.3:89390943-89390962	MS.gene052987:intron	30.0%
AACCAATTATCTAGTATGCA+AGG	+	chr4.3:89390036-89390055	None:intergenic	30.0%
AACCTTGCATACTAGATAAT+TGG	-	chr4.3:89390031-89390050	MS.gene052987:intron	30.0%
AACTCGAATTGTAGTAAACT+CGG	-	chr4.3:89388510-89388529	MS.gene052987:CDS	30.0%
AATGAAACATATCCACTATG+AGG	-	chr4.3:89390873-89390892	MS.gene052987:intron	30.0%
AATGTCCACAAAAAATTCTG+TGG	+	chr4.3:89392383-89392402	None:intergenic	30.0%
ACCAATTATTTGCCTATATG+CGG	-	chr4.3:89389599-89389618	MS.gene052987:CDS	30.0%
ACTGAATCATATAACCTTTC+TGG	+	chr4.3:89392028-89392047	None:intergenic	30.0%
ATACATGTGAAATTGAATCG+AGG	-	chr4.3:89390430-89390449	MS.gene052987:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	89388029	89393595	89388029	ID=MS.gene052987
chr4.3	mRNA	89388029	89393595	89388029	ID=MS.gene052987.t1;Parent=MS.gene052987
chr4.3	exon	89393511	89393595	89393511	ID=MS.gene052987.t1.exon1;Parent=MS.gene052987.t1
chr4.3	CDS	89393511	89393595	89393511	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89390970	89391136	89390970	ID=MS.gene052987.t1.exon2;Parent=MS.gene052987.t1
chr4.3	CDS	89390970	89391136	89390970	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89390688	89390879	89390688	ID=MS.gene052987.t1.exon3;Parent=MS.gene052987.t1
chr4.3	CDS	89390688	89390879	89390688	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89390442	89390555	89390442	ID=MS.gene052987.t1.exon4;Parent=MS.gene052987.t1
chr4.3	CDS	89390442	89390555	89390442	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89390210	89390329	89390210	ID=MS.gene052987.t1.exon5;Parent=MS.gene052987.t1
chr4.3	CDS	89390210	89390329	89390210	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89389754	89389876	89389754	ID=MS.gene052987.t1.exon6;Parent=MS.gene052987.t1
chr4.3	CDS	89389754	89389876	89389754	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89389555	89389653	89389555	ID=MS.gene052987.t1.exon7;Parent=MS.gene052987.t1
chr4.3	CDS	89389555	89389653	89389555	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89389330	89389386	89389330	ID=MS.gene052987.t1.exon8;Parent=MS.gene052987.t1
chr4.3	CDS	89389330	89389386	89389330	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89388886	89389254	89388886	ID=MS.gene052987.t1.exon9;Parent=MS.gene052987.t1
chr4.3	CDS	89388886	89389254	89388886	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89388688	89388768	89388688	ID=MS.gene052987.t1.exon10;Parent=MS.gene052987.t1
chr4.3	CDS	89388688	89388768	89388688	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89388479	89388562	89388479	ID=MS.gene052987.t1.exon11;Parent=MS.gene052987.t1
chr4.3	CDS	89388479	89388562	89388479	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1
chr4.3	exon	89388029	89388181	89388029	ID=MS.gene052987.t1.exon12;Parent=MS.gene052987.t1
chr4.3	CDS	89388029	89388181	89388029	ID=cds.MS.gene052987.t1;Parent=MS.gene052987.t1

Gene Sequence

>MS.gene052987

ATACTTGGTGTATATGATTGGTCGGGAAGCAACCCAATGCCCCCTGAGTTTTGGATCCTTCCTTCATTTCTTCCTATGCATCCAGGTTCAATTAATTTAGTCTGTTTTGTTAACCTTTTTAGAACAATTTAAATATAAGGTTTGAAATGACGCTTACAACTAACTCTAGTCAAGCAACATTGTCCATCAATAACTTGAATTTTGTTTCTAAGATCCTAAAATCTAAGAAGATGGCAGCAATTTAGTTAACATGTCAGCATGTTGATATTTAGTTGGTACATCATAAACTCGAAGTTGTCTAGATTTAACTTGCTCATTGACAAAATGATATACTTCATTTTTTAGTGCAGAGGTAGTAATAGACAAAGGTTGTTAAAACCATGAGTTGACTCGTGGAATCGTATTGTTAAAAAAAAAAAAAAAAAAAAAACTTGTGCAATCATACGAATCTAAGTATCAATTTTGAGTTGACTCCGCTTTAAACTCGAATTGTAGTAAACTCGGAAATGAAATTGTGTTTACACGGATGGACTCACTCGTAGTGAACTCAATAAACTTGGGTAAACTAGGATAACCCATAGGAATGTTTTAAAATAATTATTTATCTTTTATTTCATCTCAGTTCTCACATCAGTTCCTTTTCTTCCTTGTTATCTTGATTTTACTAATGTCAATTTTTTGCTTTATAATTGAGTTGAAATTTTTATTTATTGATACATTTATTGTATCATATAATTATATACGTCACCCTGTAAAAAAATATATGTCACATATATTTTTTTAATATTATTTTAATATGAGATAAACTCATATGAGTCATTTTAACATAGGCAAAATGAATTTGCTAAACCTCTCGATTTTGACAACTTTGATAATAGAAACCTAAGCCTTCATAGAGCAAGAGAATTTAGAGAGAATCTAAAGAATGTGAATCTATTTTCATTGATGAAAGTTAGTTATGTTTATATGATGACAAGTATTTATAGAGAAGTAATCCCTCAAACTAATTTGACTCAAGTATTAGTCTAGTTAATTTAGCTGACTAGACTAATATTGGCTAACTGTAATGAATTGTTGCTCTATATTCTATAAACAATGTTCCCACCTCAAGCACATTTCCGAGGTATTATTTGCTTTTGAGTCTTGTGTGTAAGCCTTCATGGAACTCATAGTAAGCTATTGTATGCTACTCATCACTCAATAGTTTAGGAGCATGAGCCATTGATATTTGCAAATCAGTGAAAAGATTGGTGACCAACATTATCTCAAATGTTGTTGTTGGAACTTTCATGTAATCAGCTTTCTGCTGAAGATCTTGCAATAATTTCTCTATTTCTTCGATAGTCATGTGATTGGATTGCCACCAAAGAAGATGATGTTGAGATATATAGCAATAAGTTGAGATAACAAGGTCATTTTGGCATGACCAAGTAGTAAATGGTATGCTTAAGATAGAAAAAAGACGTTGTATGTGTTGAAGATGAATGGTAATGGGTTTGTGCATGAATTGAGAAAGCTTGTCGATGTTGAACGATAAGTCAGGAAGGGTGGGATTTAAATGTTGAAGAGAACCAATTATTTGCCTATATGCGGTGGAGTTAGTGGATATTGAAGCATCATGTAGTTAATGTTTGCCGTTGTTAACATATCTATCAATGATGGGACATAAACAAACGATTTGATGTTGGTACTTGGTATAAGTTCAACTCCAAGAAATCAATGAAGATTTCTCATGTTTTTAAAAAGCAAATGTTTCATTAAAATGAAATCTTGCACGTCGAGTAAAGTCTTTGGCCACAAGGCGTGCTTTCTACATAGGAATTTGTGGAGCCATCTAGATTAATTTTATGAGAAAAAGCCATTTGCATCCAAATATATTGTAGTTCTTCGGAAATGATAGCATGAAGGATAAGATTATCCCGACGTCTTTAGAAGTTCTACATGTTTTGGTACCATCAACATAGCCAACAAGGTCATATGCAATGAGTAATGCTTTGAGTTGAACCTTGCATACTAGATAATTGGTTACACTTAGTTTCATAGATGCATGGTTGTTGATAGAAACAACCGATTGAATATTATTGACAAGAATATCAGTAGTGGTTAGAGATTCAACAGACATGGCTGAGCCTTAACGTGTTAAAAAAATATGGATCAAGTTTGTTGTTAAGCAGAAGCTCGTGATATCATAAAGAGGGTTTGAAATGAAAAATTGAATTGAATTAGAATGAAATGAAAGCTTTATATAATTAGCATTGTTAGTTACATCAAGGTTAGGAACAAATACATATAGAAGTAGGAATCGAATGAATTTCCATGATAACAGTTGGAGAATTCAAATTATACACCATAATAGAAAGCTTATAACTAGTCTTAGTCATTTGATATTATCTAATACAATATACATGTGAAATTGAATCGAGGGTTATTCTATCTGATTTTCACCTTCGTTATTACAGCTAAAATGTGGTGTTATTGTCGGTTGGTATACATGCCAATGTCTTACTTGTATGGGAAGAGGTTTGTAGGTTCAATAACCCCACTAATCTTACAGTTGAGAGAAGAACTCCATACTCAACCTTACGAAAAAATTAATTGGCCAAAATCACGTCACCTATGTGCAAAGGTTAGAGTTTGTCTTTTATTGATCACAATGTGTGAACTTACACATCCTTTTTAACATAGGAGGAATAATGATCCATTTTATGTCTCACAGGAAGATCTTTACTATCCTCATCCTTTGATACAAGATCTGATATGGGATAGCTTATACATATTCACCGAGCCACTTCTCACCCACTGGCCTTTCAACAACCTAGTCAGAGAAAAAGCCCTTCAAGTAACAATGAAACATATCCACTATGAGGATGAGAATAGTCGATACATAACCATTGCGTCTGTGGAAAAAGTAAGTAACATGGCAATTAAGCATATTGGTCATTTAGTTTTATGCATTAACTGGAGTGGGATTAGTTTTTTAGTTTTCCATTGAAAAAGTGAATCAATTCAACTATGCCATTAAAGTGTATATATTTATCAGGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTACAAGAAGCATCTCGCAAGGGTCCCAGATTATTTATGGATTTCAGAAGATGGAATGACCATGCAGGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTATTACTAATTACTTCTATTACTATTATAACTTATGTGATACATTCATTAAAGAACATTTGTATTAATACAATGCAGACTTTTGGTAGCCAAGTATGGGATACTAGTTTTGCCATTCAAGCTTTGCTTGCCACCAACCTAATTGAGGAAATTGGTCCTGCACTTGCAAAAGGACATGATTTCATCAAGAAATCTCAGGTATGCTTAATTTTGATGACAAGCATATGACACAGTCACAATTCTTTCCTTTAAAATAAGGAAAGCAAACTCCCAAATGAACCAATATAGTAAATGAGATATGTAAGGTCCCATTTATTTATTAAATGTAAGGCCTTACAGGAGTTTATTAAGATTCCTCATCTTTACAAAATCAGCTTGCAAGATCAGGAGTGCAACTCTTAATAAACCCTTGTCAGGCCTTACCATTAATCTATTTCAGACTTTTGTTTTTCTCAATGACGCCCATTAGGCCTTTGAACAATAGGTGTGCTAGCTTTATCTTGCAATGAAACTGATACTCTTATTTCACAGGTTAAGGATAACCCTTCTGGAGATTTCAAGAGTATGTATCGTCATATTTCTAAAGGCTCGTGGACCTTCTCCGATCAAGACCAAGGATGGCAACTTTCTGATTGCACCGCAGAAGGATTGAAGGTAACTAACAACATAGGCTATAAACAACTTAATTTGATACTAAGCTTTCACAATCACAACAAATATAAGTTAATTAAGGTAAAGTTATGTGTTGTTCCAGTGCTGTCTACATTTATCAATGTTGCCTCCAGAGATTGTGGGGGAAAAGATGGAACCAGAAAGGTTATATGATTCAGTCAATATCTTGTTGTCGCTTCAGGCAAGTACTATTCAATTATTTGTCATATACTTTTAATTAATTGATTAATTAATTTCTACGTGATCTTTGATCAACAGAAACTTGGAGTTTATTTTGATCATTGATGTTTGATTTATTTGTGCTACCTGGTTTACTTTTGACACAACTTTATTTTTTTAATTATTGCAGAGTAAAAATGGTGGATTGGCAGCTTGGGAGCCAGCAGGAGCTTCAAAATGGTTAGAAGTAAGTATTGTATTAATATGTAATCATTCATATATGAAAATTAATAAACTAATTAGCTTTGTTATTTATTTTCAGGTGCTCAACCCCACAGAATTTTTTGTGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGCATCGGCAATTCAAGCTTTAATTTTGTTCAAGAAGCTATATCCAGGGCATAGGAAGAAAGAGATAGAGAATTTCATCGCCAATGCAGTTCGATTCCTTGAAGATACACAATTAGCTGATGGTTCATGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGTTGTTGGTTTGCTCTTGGTGGTTTAGCAGCTGCTAGCAAGACTTATACCAATTGTGCTGCGATTCGCAAGGCTGTTAAATTTCTTCTCAGAATACAGGGAAAAGATGGTGGATGGGGGGAGAGCTATCTTTCATGCCCAAAAAAGGTTTATATATAATTAAGTAATTATTGCTAACTAGCTACCAATAATTTGCAAACTTCAAACATGAGTTGACTGACAATAGTAATAGTGATAATGTCTTACTAAATAATGATAATTCAGATGTATGTACCTCTTGAAGGAAGTCGGTCAAATGTTGTACAAACTGCATGGGCTCTTATGGCATTAATTCATGCTGGACAGGTTAGCTTTTGATATTTATGTGTATGATTAATTGATTATAGACCTGCTTTCATGACCATATATATAATTGCCAATGAATCTTAAGATAAGTTTTTTTGTCTTCCTTTTATAATTCTGATGTACAGGCAGAGAGAGACCATACTCCTCTTCACCGTGCTGCAAAATTGCTCATCAATTCCCAATTGGAAGAAGGCAATTGGCCCCAACAGGTTCATCTCAGTACTTCTTTGATATGAAATAATATGGCTCTTCCTTCTTTATGCCTGCCTAAGGTCACAAGAGCAAAATTGATTATATTTGATTATACAAGACAAGACATTAGCATTATATATATATATAATCAAAGAAGATCTCTTTTGCCATCTTGACTGTGTGAGGACACTGTGTTGAAATTGATCATACGTAATTTTTTTTTATTTCAAAGAAATTGAATTGCACAATTGCATTTTCTATCTGGTAGTCAACATCAACATCTACTAAACCTTTGTCCTATTTATTTATTGCAGGATATCTCAGGAGCATTCATGAAAAATTGTATGTTACATTACCCAATGTATAGAGATATTTTCCCATTGTGGGCTCTAGCCGAGTATCGTAGACAGGTTCCATTGTCTTCCACTGTGTGTGACTGCAATTTAAAGAATGAATTCGAGATTTGA

Protein sequence

>MS.gene052987.t1

ILGVYDWSGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGSITPLILQLREELHTQPYEKINWPKSRHLCAKEDLYYPHPLIQDLIWDSLYIFTEPLLTHWPFNNLVREKALQVTMKHIHYEDENSRYITIASVEKVLCMLACWVEDPNGDAYKKHLARVPDYLWISEDGMTMQTFGSQVWDTSFAIQALLATNLIEEIGPALAKGHDFIKKSQVKDNPSGDFKSMYRHISKGSWTFSDQDQGWQLSDCTAEGLKCCLHLSMLPPEIVGEKMEPERLYDSVNILLSLQSKNGGLAAWEPAGASKWLEVLNPTEFFVDIVVEHEYVECTASAIQALILFKKLYPGHRKKEIENFIANAVRFLEDTQLADGSWYGNWGVCFTYGCWFALGGLAAASKTYTNCAAIRKAVKFLLRIQGKDGGWGESYLSCPKKMYVPLEGSRSNVVQTAWALMALIHAGQAERDHTPLHRAAKLLINSQLEEGNWPQQDISGAFMKNCMLHYPMYRDIFPLWALAEYRRQVPLSSTVCDCNLKNEFEI