Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98152.t1 | RHN58267.1 | 99.3 | 291 | 2 | 0 | 1 | 291 | 1 | 291 | 2.70E-135 | 491.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98152.t1 | Q8VC52 | 46.5 | 86 | 46 | 0 | 29 | 114 | 18 | 103 | 7.7e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98152.t1 | G7JVK2 | 99.3 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 1.9e-135 | 491.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene98152 | -0.836335 | 9.94E-57 | -1.69E-46 |
| MS.gene04919 | MS.gene98152 | -0.808191 | 3.50E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene98152 | -0.832953 | 7.04E-56 | -1.69E-46 |
| MS.gene049680 | MS.gene98152 | -0.826419 | 2.74E-54 | -1.69E-46 |
| MS.gene050300 | MS.gene98152 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene98152 | -0.811934 | 5.46E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene98152 | -0.822462 | 2.34E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene98152 | -0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene98152 | -0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene98152 | -0.811016 | 8.64E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene98152 | -0.818883 | 1.55E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene98152 | -0.825487 | 4.56E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene98152 | -0.833869 | 4.16E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene98152 | -0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene98152 | 0.837128 | 6.24E-57 | -1.69E-46 |
| MS.gene059901 | MS.gene98152 | 0.840133 | 1.04E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene98152 | -0.803399 | 3.55E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene98152 | -0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene060917 | MS.gene98152 | -0.810861 | 9.34E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene98152 | -0.813121 | 3.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98152.t1 | MTR_4g005900 | 99.310 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 0.0 | 594 |
| MS.gene98152.t1 | MTR_4g005900 | 98.621 | 290 | 2 | 1 | 1 | 290 | 1 | 288 | 0.0 | 585 |
| MS.gene98152.t1 | MTR_8g016140 | 32.950 | 261 | 143 | 6 | 35 | 284 | 20 | 259 | 1.67e-35 | 129 |
| MS.gene98152.t1 | MTR_5g016680 | 34.601 | 263 | 163 | 4 | 27 | 284 | 71 | 329 | 2.52e-35 | 130 |
| MS.gene98152.t1 | MTR_5g016680 | 35.227 | 264 | 159 | 6 | 27 | 284 | 71 | 328 | 1.38e-34 | 128 |
| MS.gene98152.t1 | MTR_5g016680 | 42.857 | 112 | 59 | 3 | 27 | 133 | 71 | 182 | 3.14e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98152.t1 | AT3G21215 | 65.273 | 311 | 85 | 1 | 1 | 288 | 1 | 311 | 1.77e-127 | 365 |
| MS.gene98152.t1 | AT3G21215 | 65.472 | 307 | 83 | 1 | 1 | 284 | 1 | 307 | 7.84e-125 | 360 |
| MS.gene98152.t1 | AT3G21215 | 65.472 | 307 | 83 | 1 | 1 | 284 | 1 | 307 | 7.84e-125 | 360 |
| MS.gene98152.t1 | AT3G21215 | 65.472 | 307 | 83 | 1 | 1 | 284 | 1 | 307 | 7.84e-125 | 360 |
| MS.gene98152.t1 | AT2G42240 | 37.313 | 268 | 144 | 8 | 24 | 288 | 38 | 284 | 7.12e-40 | 141 |
| MS.gene98152.t1 | AT2G42240 | 36.742 | 264 | 143 | 8 | 24 | 284 | 38 | 280 | 1.70e-38 | 137 |
| MS.gene98152.t1 | AT2G42240 | 36.502 | 263 | 143 | 8 | 24 | 283 | 38 | 279 | 1.92e-37 | 134 |
| MS.gene98152.t1 | AT3G13700 | 31.359 | 287 | 163 | 8 | 7 | 284 | 18 | 279 | 2.10e-32 | 121 |
| MS.gene98152.t1 | AT3G13700 | 29.276 | 304 | 163 | 8 | 7 | 283 | 18 | 296 | 1.45e-27 | 108 |
Find 96 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCAACACCCTGTTTAT+TGG | 0.156343 | 4.1:-89072864 | MS.gene98152:CDS |
| TCCTCCGCCACCACCTGTTT+GGG | 0.218443 | 4.1:-89074362 | MS.gene98152:CDS |
| CTTGCAACACCCTGTTTATT+GGG | 0.228971 | 4.1:-89072863 | MS.gene98152:CDS |
| TCTCTCTCTTTAACATCTTC+TGG | 0.236900 | 4.1:+89075136 | None:intergenic |
| TGGAAGACCCGTTATAAATA+TGG | 0.265459 | 4.1:+89075156 | None:intergenic |
| CGGCGGCGGGAGGCCATTGC+TGG | 0.265928 | 4.1:+89075304 | None:intergenic |
| AAAGCCATTCTCACCTGAAT+TGG | 0.289777 | 4.1:+89073922 | None:intergenic |
| ATCCTCCGCCACCACCTGTT+TGG | 0.292096 | 4.1:-89074363 | MS.gene98152:CDS |
| CACCCTGTTTATTGGGAACT+TGG | 0.308237 | 4.1:-89072856 | MS.gene98152:CDS |
| TAGCAGTTATGTTCCAATTC+AGG | 0.309823 | 4.1:-89073935 | MS.gene98152:intron |
| TTAAGCAAATGAAGATTATA+AGG | 0.318083 | 4.1:-89072671 | MS.gene98152:CDS |
| GAAGGAATAGCGGTGGGTTG+AGG | 0.329734 | 4.1:+89075270 | None:intergenic |
| CTCCCAAGTTCCCAATAAAC+AGG | 0.342043 | 4.1:+89072853 | None:intergenic |
| GGAGGAGGAGCGGCGGCGGG+AGG | 0.344741 | 4.1:+89075294 | None:intergenic |
| GGTGCTGTTATCCCAAGTTC+TGG | 0.347584 | 4.1:-89072478 | MS.gene98152:CDS |
| ATAGCGGTGGGTTGAGGAGG+AGG | 0.368075 | 4.1:+89075276 | None:intergenic |
| AGGAGGAGGAGGAGCGGCGG+CGG | 0.380056 | 4.1:+89075290 | None:intergenic |
| ATCCCAAGTTCTGGTTCAAT+TGG | 0.381310 | 4.1:-89072469 | MS.gene98152:CDS |
| GGAGGCCATTGCTGGTGGTA+AGG | 0.381880 | 4.1:+89075312 | None:intergenic |
| TGCTGCTAAAGATATTCTTC+AGG | 0.389765 | 4.1:-89075005 | MS.gene98152:CDS |
| GGCATTGGTACTTGTGCAAC+AGG | 0.393304 | 4.1:+89073979 | None:intergenic |
| ATGCCAATTGAACCAGAACT+TGG | 0.417682 | 4.1:+89072466 | None:intergenic |
| TACCCATGTGGTCCCCAAAC+AGG | 0.424369 | 4.1:+89074349 | None:intergenic |
| GGTTCGAACCATATTTATAA+CGG | 0.432197 | 4.1:-89075164 | MS.gene98152:CDS |
| TTTCAAAGCCGAAAAGCCTA+TGG | 0.434501 | 4.1:-89075062 | MS.gene98152:CDS |
| GGAATAGCGGTGGGTTGAGG+AGG | 0.444814 | 4.1:+89075273 | None:intergenic |
| CCCCAAACAGGTGGTGGCGG+AGG | 0.452926 | 4.1:+89074361 | None:intergenic |
| ACCCTGTTTATTGGGAACTT+GGG | 0.453911 | 4.1:-89072855 | MS.gene98152:CDS |
| GTTCGAACCATATTTATAAC+GGG | 0.455076 | 4.1:-89075163 | MS.gene98152:CDS |
| GAGGCCATTGCTGGTGGTAA+GGG | 0.456679 | 4.1:+89075313 | None:intergenic |
| GGATCATACGGAGGAGGAGG+TGG | 0.460265 | 4.1:+89074015 | None:intergenic |
| GCCATTGCTGGTGGTAAGGG+TGG | 0.461353 | 4.1:+89075316 | None:intergenic |
| GGAGGAGGAGGAGCGGCGGC+GGG | 0.463504 | 4.1:+89075291 | None:intergenic |
| AACCTTTGTCGATGGTTACC+TGG | 0.465772 | 4.1:-89075106 | MS.gene98152:CDS |
| TCATACGGAGGAGGAGGTGG+TGG | 0.465780 | 4.1:+89074018 | None:intergenic |
| GCTGGGGATTATAATCATAC+TGG | 0.472133 | 4.1:-89074409 | MS.gene98152:CDS |
| ATCTTCATTTGCTTAAAGCC+AGG | 0.474830 | 4.1:+89072678 | None:intergenic |
| AGTAAACGGTTACGAACAGC+TGG | 0.481756 | 4.1:-89074427 | MS.gene98152:CDS |
| GCAACAGGATAGCCTGCATA+TGG | 0.482662 | 4.1:+89073994 | None:intergenic |
| GTGGTAAGGGTGGATGCCGT+TGG | 0.484200 | 4.1:+89075326 | None:intergenic |
| TGTGGTCCCCAAACAGGTGG+TGG | 0.492889 | 4.1:+89074355 | None:intergenic |
| GCAAATGAAGATTATAAGGC+AGG | 0.500307 | 4.1:-89072667 | MS.gene98152:CDS |
| GGTGGTGGCGGAGGATGAAA+AGG | 0.515482 | 4.1:+89074370 | None:intergenic |
| AAATGTGCACCACAATCTGC+AGG | 0.517804 | 4.1:-89072500 | MS.gene98152:CDS |
| GCTTTGTAATGCAGACAACC+TGG | 0.519392 | 4.1:-89072696 | MS.gene98152:intron |
| AGTACTACCTCTTCGGAAGA+AGG | 0.521807 | 4.1:+89075246 | None:intergenic |
| GCGGTGGGTTGAGGAGGAGG+AGG | 0.522344 | 4.1:+89075279 | None:intergenic |
| GGTCCCCAAACAGGTGGTGG+CGG | 0.523992 | 4.1:+89074358 | None:intergenic |
| CGGCGGGAGGCCATTGCTGG+TGG | 0.524594 | 4.1:+89075307 | None:intergenic |
| GGTGAGATAGACACAGGAGC+AGG | 0.526097 | 4.1:+89073958 | None:intergenic |
| TGAAGGAAGTACTACCTCTT+CGG | 0.528081 | 4.1:+89075239 | None:intergenic |
| CCACCTGTTTGGGGACCACA+TGG | 0.534905 | 4.1:-89074352 | MS.gene98152:CDS |
| TCCACCCTTACCACCAGCAA+TGG | 0.538447 | 4.1:-89075317 | MS.gene98152:CDS |
| AACTTCAAAACCTTTGTCGA+TGG | 0.541598 | 4.1:-89075114 | MS.gene98152:CDS |
| TGAAGAACAGATTTAGCCTC+GGG | 0.546026 | 4.1:+89074968 | None:intergenic |
| TCCTTCTCCTTCTTCCGAAG+AGG | 0.546449 | 4.1:-89075253 | MS.gene98152:intron |
| TAGCCTGCATATGGATCATA+CGG | 0.548541 | 4.1:+89074003 | None:intergenic |
| TAAACAGGGTGTTGCAAGGA+GGG | 0.548723 | 4.1:+89072868 | None:intergenic |
| CCTCCGCCACCACCTGTTTG+GGG | 0.555676 | 4.1:-89074361 | MS.gene98152:CDS |
| AACTGAGAAGCTTCAAAACC+AGG | 0.556577 | 4.1:+89075088 | None:intergenic |
| TTCAAAGCCGAAAAGCCTAT+GGG | 0.558458 | 4.1:-89075061 | MS.gene98152:CDS |
| CCTCCGTATGATCCATATGC+AGG | 0.559113 | 4.1:-89074006 | MS.gene98152:CDS |
| ATCTGTTCTTCATACTGAGA+TGG | 0.561919 | 4.1:-89074957 | MS.gene98152:CDS |
| GAAGGAGAAGGAATAGCGGT+GGG | 0.564113 | 4.1:+89075264 | None:intergenic |
| GATTCATTCATGGCAGCCAA+CGG | 0.570409 | 4.1:-89075342 | None:intergenic |
| TAACAGCACCCTGCAGATTG+TGG | 0.570755 | 4.1:+89072491 | None:intergenic |
| CATTAATGAGGAAGAAGTGA+GGG | 0.575202 | 4.1:-89072826 | MS.gene98152:CDS |
| ATGAAGAACAGATTTAGCCT+CGG | 0.577945 | 4.1:+89074967 | None:intergenic |
| TATGGATCATACGGAGGAGG+AGG | 0.580137 | 4.1:+89074012 | None:intergenic |
| ATAGACACAGGAGCAGGCAT+TGG | 0.580929 | 4.1:+89073964 | None:intergenic |
| GGCGGAGGATGAAAAGGAGA+CGG | 0.593468 | 4.1:+89074376 | None:intergenic |
| TGAATTGGAACATAACTGCT+AGG | 0.602093 | 4.1:+89073937 | None:intergenic |
| ACCTCTTCGGAAGAAGGAGA+AGG | 0.602484 | 4.1:+89075252 | None:intergenic |
| CCAATAAACAGGGTGTTGCA+AGG | 0.603873 | 4.1:+89072864 | None:intergenic |
| CTTGGGAGAGAACATTAATG+AGG | 0.606113 | 4.1:-89072838 | MS.gene98152:CDS |
| GCATATGGATCATACGGAGG+AGG | 0.606969 | 4.1:+89074009 | None:intergenic |
| TGAAGATTATAAGGCAGGAG+AGG | 0.609049 | 4.1:-89072662 | MS.gene98152:CDS |
| TGCCAATTGAACCAGAACTT+GGG | 0.610282 | 4.1:+89072467 | None:intergenic |
| TTGAAGAGAGCAAAACCCAT+AGG | 0.622823 | 4.1:+89075046 | None:intergenic |
| TTAGCAGCAATAGCTTGATG+AGG | 0.625830 | 4.1:+89075019 | None:intergenic |
| ACATTAATGAGGAAGAAGTG+AGG | 0.646735 | 4.1:-89072827 | MS.gene98152:CDS |
| AGAAGGAGAAGGAATAGCGG+TGG | 0.646815 | 4.1:+89075263 | None:intergenic |
| CCATGTGGTCCCCAAACAGG+TGG | 0.654893 | 4.1:+89074352 | None:intergenic |
| CACCTGTTTGGGGACCACAT+GGG | 0.665991 | 4.1:-89074351 | MS.gene98152:intron |
| AACCAGGTAACCATCGACAA+AGG | 0.666576 | 4.1:+89075104 | None:intergenic |
| TCCCAAGTTCCCAATAAACA+GGG | 0.668529 | 4.1:+89072854 | None:intergenic |
| TTTGTGTTAGTTTACCCATG+TGG | 0.672879 | 4.1:+89074337 | None:intergenic |
| GTTCTGGTTCAATTGGCATG+CGG | 0.674324 | 4.1:-89072462 | MS.gene98152:CDS |
| AATGTGCACCACAATCTGCA+GGG | 0.681242 | 4.1:-89072499 | MS.gene98152:CDS |
| GTAAACGGTTACGAACAGCT+GGG | 0.684153 | 4.1:-89074426 | MS.gene98152:CDS |
| TAAACGGTTACGAACAGCTG+GGG | 0.691927 | 4.1:-89074425 | MS.gene98152:CDS |
| CTGCTAGGTGAGATAGACAC+AGG | 0.695547 | 4.1:+89073952 | None:intergenic |
| ATAAACAGGGTGTTGCAAGG+AGG | 0.695618 | 4.1:+89072867 | None:intergenic |
| ATTAATGAGGAAGAAGTGAG+GGG | 0.716298 | 4.1:-89072825 | MS.gene98152:CDS |
| GGAAGAAGGAGAAGGAATAG+CGG | 0.729192 | 4.1:+89075260 | None:intergenic |
| CCTGCATATGGATCATACGG+AGG | 0.734736 | 4.1:+89074006 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAATATGATGTTTAAA+GGG | - | chr4.1:89074678-89074697 | MS.gene98152:intron | 15.0% |
| !! | TCATTGATAAACAATATTAA+CGG | + | chr4.1:89074817-89074836 | None:intergenic | 15.0% |
| !!! | CTTATTTTGATTTTTTTTGT+AGG | - | chr4.1:89073281-89073300 | MS.gene98152:intron | 15.0% |
| !! | CAAACTTTCAGTTAATAATA+TGG | + | chr4.1:89073696-89073715 | None:intergenic | 20.0% |
| !! | GGAAAAAATATGATGTTTAA+AGG | - | chr4.1:89074677-89074696 | MS.gene98152:intron | 20.0% |
| !! | TTAAGCAAATGAAGATTATA+AGG | - | chr4.1:89075091-89075110 | MS.gene98152:CDS | 20.0% |
| !! | TTTAGACTAAATTATGGTAT+TGG | - | chr4.1:89073127-89073146 | MS.gene98152:intron | 20.0% |
| !!! | CAATTCAATTATACTTTTTC+AGG | - | chr4.1:89072577-89072596 | MS.gene98152:intron | 20.0% |
| !!! | TACAATATCCTTTTTTATTG+TGG | - | chr4.1:89075324-89075343 | MS.gene98152:CDS | 20.0% |
| !!! | TCAATTTTCATTCAATTATG+TGG | - | chr4.1:89072873-89072892 | MS.gene98152:CDS | 20.0% |
| !!! | TGAAAGTTTGTTTGTTTTTA+TGG | - | chr4.1:89073706-89073725 | MS.gene98152:intron | 20.0% |
| !!! | TTGATTTTTTTTGTAGGAAT+AGG | - | chr4.1:89073287-89073306 | MS.gene98152:intron | 20.0% |
| !!! | TTTAAAATAATCACATGTGT+CGG | + | chr4.1:89073000-89073019 | None:intergenic | 20.0% |
| ! | AAAAATCTCTTTGTTAAACG+AGG | - | chr4.1:89072833-89072852 | MS.gene98152:CDS | 25.0% |
| ! | AAAACAATGTTGTCAAATAG+TGG | - | chr4.1:89073487-89073506 | MS.gene98152:intron | 25.0% |
| ! | AAAAGTTGGAGTAATTATTG+AGG | + | chr4.1:89074138-89074157 | None:intergenic | 25.0% |
| ! | AAAGTTGGAGTAATTATTGA+GGG | + | chr4.1:89074137-89074156 | None:intergenic | 25.0% |
| ! | AAATAATAGAAGAAGAGTGA+AGG | + | chr4.1:89072543-89072562 | None:intergenic | 25.0% |
| ! | ATCAATTTCTAACAGTTGAA+TGG | + | chr4.1:89074374-89074393 | None:intergenic | 25.0% |
| ! | ATTGTATCTCAAAGTGAATA+TGG | - | chr4.1:89074469-89074488 | MS.gene98152:intron | 25.0% |
| ! | CTTATGTTTATGCTAATACT+TGG | - | chr4.1:89075202-89075221 | MS.gene98152:intron | 25.0% |
| ! | GATTAATCCAATATATGACA+CGG | + | chr4.1:89075035-89075054 | None:intergenic | 25.0% |
| ! | GTCTTTCTCTAATAAAGTAA+GGG | - | chr4.1:89074189-89074208 | MS.gene98152:intron | 25.0% |
| ! | TGTCTTTCTCTAATAAAGTA+AGG | - | chr4.1:89074188-89074207 | MS.gene98152:intron | 25.0% |
| ! | TTGTATCTCAAAGTGAATAT+GGG | - | chr4.1:89074470-89074489 | MS.gene98152:intron | 25.0% |
| !! | GTTTTTATGGTCTAGATATA+TGG | - | chr4.1:89073719-89073738 | MS.gene98152:intron | 25.0% |
| !! | TTAAACTGTTAATGCTACTT+TGG | - | chr4.1:89073861-89073880 | MS.gene98152:intron | 25.0% |
| !!! | AACATCATATTTTTTCCAGT+AGG | + | chr4.1:89074674-89074693 | None:intergenic | 25.0% |
| !!! | TCTATTTTAACTACCAAAGA+AGG | - | chr4.1:89074586-89074605 | MS.gene98152:intron | 25.0% |
| !!! | TTGCTTTTGATCAAAGTAAA+CGG | - | chr4.1:89073321-89073340 | MS.gene98152:intron | 25.0% |
| AAGTGACACTCATTATGAAA+CGG | + | chr4.1:89074037-89074056 | None:intergenic | 30.0% | |
| ACATTCATTCAGCAATTTAG+AGG | + | chr4.1:89074632-89074651 | None:intergenic | 30.0% | |
| ATTACAGAGCTTATAGCTAA+CGG | + | chr4.1:89073983-89074002 | None:intergenic | 30.0% | |
| CGGTGATTTAGACTAAATTA+TGG | - | chr4.1:89073121-89073140 | MS.gene98152:intron | 30.0% | |
| CGTGATTTATAAAGATAAGG+CGG | - | chr4.1:89073943-89073962 | MS.gene98152:CDS | 30.0% | |
| CTTAATTGCTATATTCTGCT+TGG | - | chr4.1:89074534-89074553 | MS.gene98152:intron | 30.0% | |
| GAAAAGATCCAGACAATAAA+AGG | + | chr4.1:89075179-89075198 | None:intergenic | 30.0% | |
| GCTCGTGATTTATAAAGATA+AGG | - | chr4.1:89073940-89073959 | MS.gene98152:CDS | 30.0% | |
| GGTTCGAACCATATTTATAA+CGG | - | chr4.1:89072598-89072617 | MS.gene98152:intron | 30.0% | |
| GTTCGAACCATATTTATAAC+GGG | - | chr4.1:89072599-89072618 | MS.gene98152:intron | 30.0% | |
| GTTCGAAGTATATTCATAGT+TGG | - | chr4.1:89074720-89074739 | MS.gene98152:intron | 30.0% | |
| GTTGTGAAATAGTTGCTATA+GGG | - | chr4.1:89073573-89073592 | MS.gene98152:intron | 30.0% | |
| TCACTGCATGATAATAACTA+AGG | + | chr4.1:89074751-89074770 | None:intergenic | 30.0% | |
| TCTTAATCTATGTGCCAAAA+TGG | - | chr4.1:89074256-89074275 | MS.gene98152:intron | 30.0% | |
| TGTTGTGAAATAGTTGCTAT+AGG | - | chr4.1:89073572-89073591 | MS.gene98152:intron | 30.0% | |
| TTGGATTAATCTGTTGAACT+TGG | - | chr4.1:89075044-89075063 | MS.gene98152:CDS | 30.0% | |
| TTGGCACATAGATTAAGAAA+TGG | + | chr4.1:89074254-89074273 | None:intergenic | 30.0% | |
| TTGTGAAATAGTTGCTATAG+GGG | - | chr4.1:89073574-89073593 | MS.gene98152:intron | 30.0% | |
| TTTGAATTCGGAGTTAAGTT+TGG | + | chr4.1:89073222-89073241 | None:intergenic | 30.0% | |
| ! | GAAAATTCTGAGAGAAAAGT+TGG | + | chr4.1:89074152-89074171 | None:intergenic | 30.0% |
| ! | GTTTTACATACACACTGAAA+AGG | + | chr4.1:89074963-89074982 | None:intergenic | 30.0% |
| ! | TATTTGTGCCTTTTATTGTC+TGG | - | chr4.1:89075168-89075187 | MS.gene98152:intron | 30.0% |
| !! | TCATAATGAGTGTCACTTTA+GGG | - | chr4.1:89074039-89074058 | MS.gene98152:intron | 30.0% |
| !! | TTCATAATGAGTGTCACTTT+AGG | - | chr4.1:89074038-89074057 | MS.gene98152:intron | 30.0% |
| !!! | AGCATTTGTCTTTGTTTTGT+CGG | - | chr4.1:89074499-89074518 | MS.gene98152:intron | 30.0% |
| AAACGACACTCATTGTGAAA+TGG | - | chr4.1:89074297-89074316 | MS.gene98152:intron | 35.0% | |
| AACTTCAAAACCTTTGTCGA+TGG | - | chr4.1:89072648-89072667 | MS.gene98152:CDS | 35.0% | |
| AATCTATGTGCCAAAATGGA+GGG | - | chr4.1:89074260-89074279 | MS.gene98152:intron | 35.0% | |
| ACATTAATGAGGAAGAAGTG+AGG | - | chr4.1:89074935-89074954 | MS.gene98152:CDS | 35.0% | |
| ATCTCAAAGTGAATATGGGA+GGG | - | chr4.1:89074474-89074493 | MS.gene98152:intron | 35.0% | |
| ATCTGTTCTTCATACTGAGA+TGG | - | chr4.1:89072805-89072824 | MS.gene98152:intron | 35.0% | |
| ATCTTCATTTGCTTAAAGCC+AGG | + | chr4.1:89075087-89075106 | None:intergenic | 35.0% | |
| ATGAAGAACAGATTTAGCCT+CGG | + | chr4.1:89072798-89072817 | None:intergenic | 35.0% | |
| ATGTGTTATGTACATCCTAC+TGG | - | chr4.1:89074656-89074675 | MS.gene98152:intron | 35.0% | |
| ATTAATGAGGAAGAAGTGAG+GGG | - | chr4.1:89074937-89074956 | MS.gene98152:CDS | 35.0% | |
| ATTTGAACAAACCTCTACCT+TGG | + | chr4.1:89073176-89073195 | None:intergenic | 35.0% | |
| CAGATGCTCCACAATAAAAA+AGG | + | chr4.1:89075335-89075354 | None:intergenic | 35.0% | |
| CATTAATGAGGAAGAAGTGA+GGG | - | chr4.1:89074936-89074955 | MS.gene98152:CDS | 35.0% | |
| CTAATTGCACTGAACAATAG+TGG | + | chr4.1:89073606-89073625 | None:intergenic | 35.0% | |
| GCAAATGAAGATTATAAGGC+AGG | - | chr4.1:89075095-89075114 | MS.gene98152:CDS | 35.0% | |
| GTAATTATTGAGGGCAAAGT+TGG | + | chr4.1:89074128-89074147 | None:intergenic | 35.0% | |
| TAATCTATGTGCCAAAATGG+AGG | - | chr4.1:89074259-89074278 | MS.gene98152:intron | 35.0% | |
| TAGCAGTTATGTTCCAATTC+AGG | - | chr4.1:89073827-89073846 | MS.gene98152:intron | 35.0% | |
| TATCTCAAAGTGAATATGGG+AGG | - | chr4.1:89074473-89074492 | MS.gene98152:intron | 35.0% | |
| TCAACTATGAATCACGTACA+AGG | + | chr4.1:89073072-89073091 | None:intergenic | 35.0% | |
| TCTCACAATAAGTGCATGTT+TGG | - | chr4.1:89073093-89073112 | MS.gene98152:intron | 35.0% | |
| TCTCTCTCTTTAACATCTTC+TGG | + | chr4.1:89072629-89072648 | None:intergenic | 35.0% | |
| TCTTAGTGCGTGTTTGAATT+CGG | + | chr4.1:89073234-89073253 | None:intergenic | 35.0% | |
| TCTTCGATCAGAAGTAGTAA+CGG | + | chr4.1:89072901-89072920 | None:intergenic | 35.0% | |
| TGAATTGGAACATAACTGCT+AGG | + | chr4.1:89073828-89073847 | None:intergenic | 35.0% | |
| TGCTGCTAAAGATATTCTTC+AGG | - | chr4.1:89072757-89072776 | MS.gene98152:intron | 35.0% | |
| TGCTTTAATCTTGCCTTCTT+TGG | + | chr4.1:89074602-89074621 | None:intergenic | 35.0% | |
| TGGAAGACCCGTTATAAATA+TGG | + | chr4.1:89072609-89072628 | None:intergenic | 35.0% | |
| TTATGTGTCTGTGTCATGTT+TGG | - | chr4.1:89073043-89073062 | MS.gene98152:intron | 35.0% | |
| TTCTATGCCGTGTCATATAT+TGG | - | chr4.1:89075025-89075044 | MS.gene98152:CDS | 35.0% | |
| ! | AGAAAAACCGATATTTTCCG+CGG | - | chr4.1:89073624-89073643 | MS.gene98152:intron | 35.0% |
| ! | GGCTTGATATTTTCTCTTGT+TGG | - | chr4.1:89074337-89074356 | MS.gene98152:intron | 35.0% |
| ! | GTAGAGGTTTGTTCAAATCA+TGG | - | chr4.1:89073178-89073197 | MS.gene98152:intron | 35.0% |
| ! | TAAGTGCATGTTTGGAATGA+CGG | - | chr4.1:89073101-89073120 | MS.gene98152:intron | 35.0% |
| ! | TTTGTGTTAGTTTACCCATG+TGG | + | chr4.1:89073428-89073447 | None:intergenic | 35.0% |
| !! | TGTGATTTGTTGAAACTCCA+AGG | - | chr4.1:89073156-89073175 | MS.gene98152:intron | 35.0% |
| !! | TTCACAATGAGTGTCGTTTA+AGG | + | chr4.1:89074296-89074315 | None:intergenic | 35.0% |
| AAAGCCATTCTCACCTGAAT+TGG | + | chr4.1:89073843-89073862 | None:intergenic | 40.0% | |
| AACTGAGAAGCTTCAAAACC+AGG | + | chr4.1:89072677-89072696 | None:intergenic | 40.0% | |
| AATGGAGGGAGTAGTTGAAA+AGG | - | chr4.1:89074315-89074334 | MS.gene98152:intron | 40.0% | |
| ACCCTGTTTATTGGGAACTT+GGG | - | chr4.1:89074907-89074926 | MS.gene98152:intron | 40.0% | |
| ATGCCAATTGAACCAGAACT+TGG | + | chr4.1:89075299-89075318 | None:intergenic | 40.0% | |
| ATGGAGGGAGTAGTTGAAAA+GGG | - | chr4.1:89074316-89074335 | MS.gene98152:intron | 40.0% | |
| CACATCCTGCAATAGGTTAT+TGG | + | chr4.1:89075231-89075250 | None:intergenic | 40.0% | |
| CACTATTCACATCCTGCAAT+AGG | + | chr4.1:89075238-89075257 | None:intergenic | 40.0% | |
| CTTGCAACACCCTGTTTATT+GGG | - | chr4.1:89074899-89074918 | MS.gene98152:intron | 40.0% | |
| CTTGGGAGAGAACATTAATG+AGG | - | chr4.1:89074924-89074943 | MS.gene98152:intron | 40.0% | |
| GACACTCATTGTGAAATGGA+GGG | - | chr4.1:89074301-89074320 | MS.gene98152:intron | 40.0% | |
| GCTGGGGATTATAATCATAC+TGG | - | chr4.1:89073353-89073372 | MS.gene98152:intron | 40.0% | |
| GGTATCCAATAACCTATTGC+AGG | - | chr4.1:89075223-89075242 | MS.gene98152:intron | 40.0% | |
| TAGCCTGCATATGGATCATA+CGG | + | chr4.1:89073762-89073781 | None:intergenic | 40.0% | |
| TCCCAAGTTCCCAATAAACA+GGG | + | chr4.1:89074911-89074930 | None:intergenic | 40.0% | |
| TCTCAAAGTGAATATGGGAG+GGG | - | chr4.1:89074475-89074494 | MS.gene98152:intron | 40.0% | |
| TGAAGAACAGATTTAGCCTC+GGG | + | chr4.1:89072797-89072816 | None:intergenic | 40.0% | |
| TGAAGATTATAAGGCAGGAG+AGG | - | chr4.1:89075100-89075119 | MS.gene98152:CDS | 40.0% | |
| TGCCAATTGAACCAGAACTT+GGG | + | chr4.1:89075298-89075317 | None:intergenic | 40.0% | |
| TGTTCCAATTCAGGTGAGAA+TGG | - | chr4.1:89073836-89073855 | MS.gene98152:intron | 40.0% | |
| TTAGCAGCAATAGCTTGATG+AGG | + | chr4.1:89072746-89072765 | None:intergenic | 40.0% | |
| TTCAAAGCCGAAAAGCCTAT+GGG | - | chr4.1:89072701-89072720 | MS.gene98152:intron | 40.0% | |
| TTGAAGAGAGCAAAACCCAT+AGG | + | chr4.1:89072719-89072738 | None:intergenic | 40.0% | |
| TTGTTGAAACTCCAAGGTAG+AGG | - | chr4.1:89073162-89073181 | MS.gene98152:intron | 40.0% | |
| TTTCAAAGCCGAAAAGCCTA+TGG | - | chr4.1:89072700-89072719 | MS.gene98152:intron | 40.0% | |
| ! | AGCAAAACCCATAGGCTTTT+CGG | + | chr4.1:89072711-89072730 | None:intergenic | 40.0% |
| !! | ATCAGCAGAAGTGTCAATGT+CGG | + | chr4.1:89072955-89072974 | None:intergenic | 40.0% |
| !! | ATCCCAAGTTCTGGTTCAAT+TGG | - | chr4.1:89075293-89075312 | MS.gene98152:CDS | 40.0% |
| !! | TGAAGGAAGTACTACCTCTT+CGG | + | chr4.1:89072526-89072545 | None:intergenic | 40.0% |
| AAATGTGCACCACAATCTGC+AGG | - | chr4.1:89075262-89075281 | MS.gene98152:CDS | 45.0% | |
| AACCAGGTAACCATCGACAA+AGG | + | chr4.1:89072661-89072680 | None:intergenic | 45.0% | |
| AACCTTTGTCGATGGTTACC+TGG | - | chr4.1:89072656-89072675 | MS.gene98152:CDS | 45.0% | |
| AATGTGCACCACAATCTGCA+GGG | - | chr4.1:89075263-89075282 | MS.gene98152:CDS | 45.0% | |
| ACTGTCCTTGAAGTCCTGAA+CGG | - | chr4.1:89074428-89074447 | MS.gene98152:CDS | 45.0% | |
| AGTAAACGGTTACGAACAGC+TGG | - | chr4.1:89073335-89073354 | MS.gene98152:intron | 45.0% | |
| AGTACTACCTCTTCGGAAGA+AGG | + | chr4.1:89072519-89072538 | None:intergenic | 45.0% | |
| ATGTTGACAATTGCAGACCG+CGG | + | chr4.1:89073644-89073663 | None:intergenic | 45.0% | |
| CACCCTGTTTATTGGGAACT+TGG | - | chr4.1:89074906-89074925 | MS.gene98152:intron | 45.0% | |
| CCTTGCAACACCCTGTTTAT+TGG | - | chr4.1:89074898-89074917 | MS.gene98152:intron | 45.0% | |
| CGACACTCATTGTGAAATGG+AGG | - | chr4.1:89074300-89074319 | MS.gene98152:intron | 45.0% | |
| CTCCCAAGTTCCCAATAAAC+AGG | + | chr4.1:89074912-89074931 | None:intergenic | 45.0% | |
| GAACAGAAGAGCTGTGTCAA+AGG | + | chr4.1:89074990-89075009 | None:intergenic | 45.0% | |
| GACATTGACACTTCTGCTGA+TGG | - | chr4.1:89072954-89072973 | MS.gene98152:intron | 45.0% | |
| GAGCTCAAAATTGCACACGA+AGG | + | chr4.1:89073924-89073943 | None:intergenic | 45.0% | |
| GCTTTGTAATGCAGACAACC+TGG | - | chr4.1:89075066-89075085 | MS.gene98152:CDS | 45.0% | |
| GGAAGAAGGAGAAGGAATAG+CGG | + | chr4.1:89072505-89072524 | None:intergenic | 45.0% | |
| GTAAACGGTTACGAACAGCT+GGG | - | chr4.1:89073336-89073355 | MS.gene98152:intron | 45.0% | |
| TAAACGGTTACGAACAGCTG+GGG | - | chr4.1:89073337-89073356 | MS.gene98152:intron | 45.0% | |
| TTGCAGACCGCGGAAAATAT+CGG | + | chr4.1:89073634-89073653 | None:intergenic | 45.0% | |
| ! | TTGTCTTTCGCCCTCCATTT+TGG | + | chr4.1:89074273-89074292 | None:intergenic | 45.0% |
| !! | ATAAACAGGGTGTTGCAAGG+AGG | + | chr4.1:89074898-89074917 | None:intergenic | 45.0% |
| !! | CCAATAAACAGGGTGTTGCA+AGG | + | chr4.1:89074901-89074920 | None:intergenic | 45.0% |
| !! | GGATATGCTTTTTGATCCCG+AGG | - | chr4.1:89072778-89072797 | MS.gene98152:intron | 45.0% |
| !! | GTTCTGGTTCAATTGGCATG+CGG | - | chr4.1:89075300-89075319 | MS.gene98152:CDS | 45.0% |
| !! | TAAACAGGGTGTTGCAAGGA+GGG | + | chr4.1:89074897-89074916 | None:intergenic | 45.0% |
| ACCTCTTCGGAAGAAGGAGA+AGG | + | chr4.1:89072513-89072532 | None:intergenic | 50.0% | |
| AGAAGGAGAAGGAATAGCGG+TGG | + | chr4.1:89072502-89072521 | None:intergenic | 50.0% | |
| ATAGACACAGGAGCAGGCAT+TGG | + | chr4.1:89073801-89073820 | None:intergenic | 50.0% | |
| CCTCCGTATGATCCATATGC+AGG | - | chr4.1:89073756-89073775 | MS.gene98152:intron | 50.0% | |
| CCTGCATATGGATCATACGG+AGG | + | chr4.1:89073759-89073778 | None:intergenic | 50.0% | |
| CTGCTAGGTGAGATAGACAC+AGG | + | chr4.1:89073813-89073832 | None:intergenic | 50.0% | |
| CTGTCCTTGAAGTCCTGAAC+GGG | - | chr4.1:89074429-89074448 | MS.gene98152:CDS | 50.0% | |
| GAAGGAGAAGGAATAGCGGT+GGG | + | chr4.1:89072501-89072520 | None:intergenic | 50.0% | |
| GCAACAGGATAGCCTGCATA+TGG | + | chr4.1:89073771-89073790 | None:intergenic | 50.0% | |
| GCATATGGATCATACGGAGG+AGG | + | chr4.1:89073756-89073775 | None:intergenic | 50.0% | |
| TAACAGCACCCTGCAGATTG+TGG | + | chr4.1:89075274-89075293 | None:intergenic | 50.0% | |
| TATGGATCATACGGAGGAGG+AGG | + | chr4.1:89073753-89073772 | None:intergenic | 50.0% | |
| TCCTTCTCCTTCTTCCGAAG+AGG | - | chr4.1:89072509-89072528 | MS.gene98152:CDS | 50.0% | |
| !! | GGCATTGGTACTTGTGCAAC+AGG | + | chr4.1:89073786-89073805 | None:intergenic | 50.0% |
| !! | GGTGCTGTTATCCCAAGTTC+TGG | - | chr4.1:89075284-89075303 | MS.gene98152:CDS | 50.0% |
| CACCTGTTTGGGGACCACAT+GGG | - | chr4.1:89073411-89073430 | MS.gene98152:intron | 55.0% | |
| GAACTCTTCTGTGCCCGTTC+AGG | + | chr4.1:89074445-89074464 | None:intergenic | 55.0% | |
| GAGGCCATTGCTGGTGGTAA+GGG | + | chr4.1:89072452-89072471 | None:intergenic | 55.0% | |
| GGCGGAGGATGAAAAGGAGA+CGG | + | chr4.1:89073389-89073408 | None:intergenic | 55.0% | |
| GGTGAGATAGACACAGGAGC+AGG | + | chr4.1:89073807-89073826 | None:intergenic | 55.0% | |
| TACCCATGTGGTCCCCAAAC+AGG | + | chr4.1:89073416-89073435 | None:intergenic | 55.0% | |
| TCCACCCTTACCACCAGCAA+TGG | - | chr4.1:89072445-89072464 | MS.gene98152:CDS | 55.0% | |
| TGTGCCCGTTCAGGACTTCA+AGG | + | chr4.1:89074436-89074455 | None:intergenic | 55.0% | |
| !! | GAAGGAATAGCGGTGGGTTG+AGG | + | chr4.1:89072495-89072514 | None:intergenic | 55.0% |
| ATCCTCCGCCACCACCTGTT+TGG | - | chr4.1:89073399-89073418 | MS.gene98152:intron | 60.0% | |
| CCACCTGTTTGGGGACCACA+TGG | - | chr4.1:89073410-89073429 | MS.gene98152:intron | 60.0% | |
| CCATGTGGTCCCCAAACAGG+TGG | + | chr4.1:89073413-89073432 | None:intergenic | 60.0% | |
| GCCATTGCTGGTGGTAAGGG+TGG | + | chr4.1:89072449-89072468 | None:intergenic | 60.0% | |
| GGAGGCCATTGCTGGTGGTA+AGG | + | chr4.1:89072453-89072472 | None:intergenic | 60.0% | |
| GGATCATACGGAGGAGGAGG+TGG | + | chr4.1:89073750-89073769 | None:intergenic | 60.0% | |
| GTGGTAAGGGTGGATGCCGT+TGG | + | chr4.1:89072439-89072458 | None:intergenic | 60.0% | |
| TCATACGGAGGAGGAGGTGG+TGG | + | chr4.1:89073747-89073766 | None:intergenic | 60.0% | |
| TCCTCCGCCACCACCTGTTT+GGG | - | chr4.1:89073400-89073419 | MS.gene98152:intron | 60.0% | |
| TGTGGTCCCCAAACAGGTGG+TGG | + | chr4.1:89073410-89073429 | None:intergenic | 60.0% | |
| !! | ATAGCGGTGGGTTGAGGAGG+AGG | + | chr4.1:89072489-89072508 | None:intergenic | 60.0% |
| !! | GGAATAGCGGTGGGTTGAGG+AGG | + | chr4.1:89072492-89072511 | None:intergenic | 60.0% |
| !! | GGTGGTGGCGGAGGATGAAA+AGG | + | chr4.1:89073395-89073414 | None:intergenic | 60.0% |
| CCTCCGCCACCACCTGTTTG+GGG | - | chr4.1:89073401-89073420 | MS.gene98152:intron | 65.0% | |
| GGGTTGAGGAGGAGGAGGAG+CGG | + | chr4.1:89072481-89072500 | None:intergenic | 65.0% | |
| TTGAGGAGGAGGAGGAGCGG+CGG | + | chr4.1:89072478-89072497 | None:intergenic | 65.0% | |
| ! | GGTCCCCAAACAGGTGGTGG+CGG | + | chr4.1:89073407-89073426 | None:intergenic | 65.0% |
| !! | CCCCAAACAGGTGGTGGCGG+AGG | + | chr4.1:89073404-89073423 | None:intergenic | 70.0% |
| !! | GCGGTGGGTTGAGGAGGAGG+AGG | + | chr4.1:89072486-89072505 | None:intergenic | 70.0% |
| AGGAGGAGGAGGAGCGGCGG+CGG | + | chr4.1:89072475-89072494 | None:intergenic | 75.0% | |
| CGGCGGGAGGCCATTGCTGG+TGG | + | chr4.1:89072458-89072477 | None:intergenic | 75.0% | |
| ! | CGGCGGCGGGAGGCCATTGC+TGG | + | chr4.1:89072461-89072480 | None:intergenic | 80.0% |
| ! | GGAGGAGGAGGAGCGGCGGC+GGG | + | chr4.1:89072474-89072493 | None:intergenic | 80.0% |
| ! | GGAGGAGGAGCGGCGGCGGG+AGG | + | chr4.1:89072471-89072490 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 89072429 | 89075355 | 89072429 | ID=MS.gene98152 |
| chr4.1 | mRNA | 89072429 | 89075355 | 89072429 | ID=MS.gene98152.t1;Parent=MS.gene98152 |
| chr4.1 | exon | 89075254 | 89075355 | 89075254 | ID=MS.gene98152.t1.exon1;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89075254 | 89075355 | 89075254 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| chr4.1 | exon | 89074930 | 89075185 | 89074930 | ID=MS.gene98152.t1.exon2;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89074930 | 89075185 | 89074930 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| chr4.1 | exon | 89074352 | 89074481 | 89074352 | ID=MS.gene98152.t1.exon3;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89074352 | 89074481 | 89074352 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| chr4.1 | exon | 89073936 | 89074050 | 89073936 | ID=MS.gene98152.t1.exon4;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89073936 | 89074050 | 89073936 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| chr4.1 | exon | 89072813 | 89072904 | 89072813 | ID=MS.gene98152.t1.exon5;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89072813 | 89072904 | 89072813 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| chr4.1 | exon | 89072635 | 89072704 | 89072635 | ID=MS.gene98152.t1.exon6;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89072635 | 89072704 | 89072635 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| chr4.1 | exon | 89072429 | 89072539 | 89072429 | ID=MS.gene98152.t1.exon7;Parent=MS.gene98152.t1 |
| chr4.1 | CDS | 89072429 | 89072539 | 89072429 | ID=cds.MS.gene98152.t1;Parent=MS.gene98152.t1 |
| Gene Sequence |
| Protein sequence |
