Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98788.t1 | XP_003623219.2 | 98.9 | 272 | 3 | 0 | 1 | 272 | 244 | 515 | 3.50E-145 | 524.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98788.t1 | Q8S4F6 | 73.7 | 270 | 71 | 0 | 1 | 270 | 240 | 509 | 1.4e-110 | 400.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98788.t1 | G7L6J3 | 98.9 | 272 | 3 | 0 | 1 | 272 | 244 | 515 | 2.5e-145 | 524.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene98788 | 0.836938 | 6.98E-57 | -1.69E-46 |
| MS.gene049614 | MS.gene98788 | 0.812033 | 5.20E-51 | -1.69E-46 |
| MS.gene050520 | MS.gene98788 | 0.808158 | 3.55E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene98788 | 0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene050772 | MS.gene98788 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene98788 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene051255 | MS.gene98788 | 0.838599 | 2.61E-57 | -1.69E-46 |
| MS.gene051360 | MS.gene98788 | 0.81224 | 4.68E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene98788 | 0.814077 | 1.85E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene98788 | 0.807827 | 4.18E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene98788 | 0.805917 | 1.06E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene98788 | 0.816181 | 6.31E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene98788 | 0.805169 | 1.52E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene98788 | 0.824477 | 7.90E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene98788 | 0.822474 | 2.32E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene98788 | 0.812626 | 3.86E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene98788 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene98788 | 0.805056 | 1.60E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene98788 | 0.812728 | 3.66E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene98788 | 0.800687 | 1.28E-48 | -1.69E-46 |
| MS.gene055722 | MS.gene98788 | 0.804739 | 1.87E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene98788 | 0.850174 | 2.01E-60 | -1.69E-46 |
| MS.gene056611 | MS.gene98788 | 0.840112 | 1.06E-57 | -1.69E-46 |
| MS.gene056796 | MS.gene98788 | 0.806468 | 8.11E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene98788 | 0.802355 | 5.83E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene98788 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene98788 | 0.836021 | 1.19E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene98788 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene98788 | 0.805041 | 1.62E-49 | -1.69E-46 |
| MS.gene058948 | MS.gene98788 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene98788 | 0.806825 | 6.82E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene98788 | 0.811506 | 6.77E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene98788 | 0.8083 | 3.31E-50 | -1.69E-46 |
| MS.gene060356 | MS.gene98788 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene98788 | 0.84116 | 5.62E-58 | -1.69E-46 |
| MS.gene06092 | MS.gene98788 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene98788 | 0.817598 | 3.04E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98788.t1 | MTR_7g067340 | 98.897 | 272 | 3 | 0 | 1 | 272 | 244 | 515 | 0.0 | 556 |
| MS.gene98788.t1 | MTR_4g015260 | 80.297 | 269 | 53 | 0 | 1 | 269 | 106 | 374 | 2.11e-164 | 461 |
| MS.gene98788.t1 | MTR_4g015260 | 80.297 | 269 | 53 | 0 | 1 | 269 | 241 | 509 | 6.73e-163 | 462 |
| MS.gene98788.t1 | MTR_4g015250 | 70.588 | 34 | 10 | 0 | 213 | 246 | 1 | 34 | 7.58e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98788.t1 | AT5G01220 | 76.296 | 270 | 64 | 0 | 1 | 270 | 240 | 509 | 7.31e-156 | 444 |
| MS.gene98788.t1 | AT5G01220 | 81.667 | 180 | 33 | 0 | 1 | 180 | 240 | 419 | 2.33e-104 | 310 |
Find 73 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTTGGCTTCGTTGTTT+TGG | 0.243869 | 7.4:+36026965 | MS.gene98788:CDS |
| CTTGGAGTTGAAAAGAGTTT+AGG | 0.324101 | 7.4:+36025912 | MS.gene98788:CDS |
| ACAATGCTGCCATCTGGTTC+TGG | 0.350326 | 7.4:+36027234 | MS.gene98788:CDS |
| CAGCTAACAAGATTCGTCTT+TGG | 0.369310 | 7.4:+36025712 | MS.gene98788:intron |
| TGATCTGCAGGAATAATATC+TGG | 0.372207 | 7.4:-36027038 | None:intergenic |
| ATGAAAGCAACTCGAGCTTC+AGG | 0.388762 | 7.4:-36026094 | None:intergenic |
| GCAGTATTCACAGGAATGTT+AGG | 0.393518 | 7.4:+36026879 | MS.gene98788:CDS |
| TCAACTCTTTGTCGAACAAA+AGG | 0.396746 | 7.4:-36027127 | None:intergenic |
| TCTGGTTCTGGCGCAAGAAA+AGG | 0.398886 | 7.4:+36027246 | MS.gene98788:CDS |
| CAACTCTTTGTCGAACAAAA+GGG | 0.406801 | 7.4:-36027126 | None:intergenic |
| ACGTTTACTGATCCATTGTA+AGG | 0.414214 | 7.4:-36027285 | None:intergenic |
| TGAACTATCAAGGGTTTCTC+AGG | 0.420730 | 7.4:-36025879 | None:intergenic |
| ATAGTTCATGTTGGACGGCT+TGG | 0.424140 | 7.4:+36025894 | MS.gene98788:CDS |
| AAAAGCTGCACGTAATGAAA+TGG | 0.426643 | 7.4:+36027163 | MS.gene98788:CDS |
| CTGGTGCCATCTGTTGCCAT+TGG | 0.430492 | 7.4:+36025522 | MS.gene98788:CDS |
| GCAGATCAAGAAGGTAAAAC+AGG | 0.441468 | 7.4:+36027053 | MS.gene98788:CDS |
| ACGAAATGCGATTAAGACTA+AGG | 0.456016 | 7.4:+36025781 | MS.gene98788:CDS |
| TGGTGCCATCTGTTGCCATT+GGG | 0.458535 | 7.4:+36025523 | MS.gene98788:CDS |
| AACAATACAATGCTGCCATC+TGG | 0.461214 | 7.4:+36027228 | MS.gene98788:CDS |
| ACAGGTTATCTCTATAATCC+AGG | 0.464651 | 7.4:+36027071 | MS.gene98788:CDS |
| CCGGCGCGTGCTGCCACCAC+AGG | 0.469518 | 7.4:-36027008 | None:intergenic |
| CCGTCCAACATGAACTATCA+AGG | 0.479820 | 7.4:-36025889 | None:intergenic |
| CGAGTTGCTTTCATCGGAGA+TGG | 0.480961 | 7.4:+36026103 | MS.gene98788:CDS |
| CAACAGATGGCACCAGAGTC+AGG | 0.483672 | 7.4:-36025515 | None:intergenic |
| CTATAGTTAACTTGTGGTGA+TGG | 0.484123 | 7.4:-36027314 | None:intergenic |
| CTGGTTCTGGCGCAAGAAAA+GGG | 0.485575 | 7.4:+36027247 | MS.gene98788:CDS |
| AAGCAGTCTTCAAGATCCCC+TGG | 0.497573 | 7.4:-36027089 | None:intergenic |
| AACATTCCTGTGAATACTGC+AGG | 0.502201 | 7.4:-36026876 | None:intergenic |
| GAGCTAGAGAAAATGTTTGA+AGG | 0.513757 | 7.4:+36026849 | MS.gene98788:CDS |
| CCTTCAGAGTCAGAAACACT+TGG | 0.519010 | 7.4:+36026951 | MS.gene98788:CDS |
| AATAATATCTGGAATGCCTC+CGG | 0.525217 | 7.4:-36027027 | None:intergenic |
| CCTTGATAGTTCATGTTGGA+CGG | 0.532119 | 7.4:+36025889 | MS.gene98788:CDS |
| CTCTCTCAAGCATATGCTAG+TGG | 0.533783 | 7.4:+36026912 | MS.gene98788:CDS |
| CAGAGCAGCTGACCTGACTC+TGG | 0.538024 | 7.4:+36025503 | MS.gene98788:CDS |
| CGTGTGAACGGAATCGTGGA+TGG | 0.542069 | 7.4:-36025761 | None:intergenic |
| CAGGTTATCTCTATAATCCA+GGG | 0.542485 | 7.4:+36027072 | MS.gene98788:CDS |
| TGCCATCTGTTGCCATTGGG+AGG | 0.550215 | 7.4:+36025526 | MS.gene98788:CDS |
| CACAGGTATCCCCGAAGACA+TGG | 0.550551 | 7.4:-36026991 | None:intergenic |
| TATAGTTAACTTGTGGTGAT+GGG | 0.550671 | 7.4:-36027313 | None:intergenic |
| GTGGTGGCAGCACGCGCCGG+AGG | 0.554010 | 7.4:+36027011 | MS.gene98788:CDS |
| AACTCTTTGTCGAACAAAAG+GGG | 0.558837 | 7.4:-36027125 | None:intergenic |
| TCATCGGAGATGGACCGTAC+AGG | 0.559868 | 7.4:+36026113 | MS.gene98788:CDS |
| CCTGTGGTGGCAGCACGCGC+CGG | 0.571301 | 7.4:+36027008 | MS.gene98788:CDS |
| GAAGCTCGAGTTGCTTTCAT+CGG | 0.571976 | 7.4:+36026097 | MS.gene98788:CDS |
| TTCATTTCGAACCTTTCGTG+TGG | 0.577756 | 7.4:-36027207 | None:intergenic |
| CCAAGTGTTTCTGACTCTGA+AGG | 0.579198 | 7.4:-36026951 | None:intergenic |
| AAGATTCGTCTTTGGAACAA+AGG | 0.579970 | 7.4:+36025720 | MS.gene98788:CDS |
| TATTATTGAGACCCTTACAA+TGG | 0.581845 | 7.4:+36027273 | MS.gene98788:CDS |
| GGTATGCCTGCAGTATTCAC+AGG | 0.583017 | 7.4:+36026870 | MS.gene98788:CDS |
| GCCATCTGTTGCCATTGGGA+GGG | 0.585852 | 7.4:+36025527 | MS.gene98788:CDS |
| CATCATCTATAGTTAACTTG+TGG | 0.591830 | 7.4:-36027320 | None:intergenic |
| GTATTCACAGGAATGTTAGG+AGG | 0.591955 | 7.4:+36026882 | MS.gene98788:CDS |
| ATTATTCCTGCAGATCAAGA+AGG | 0.599930 | 7.4:+36027044 | MS.gene98788:CDS |
| TCCCTCCCAATGGCAACAGA+TGG | 0.600891 | 7.4:-36025528 | None:intergenic |
| CGTCCAACATGAACTATCAA+GGG | 0.605699 | 7.4:-36025888 | None:intergenic |
| CGTTTACTGATCCATTGTAA+GGG | 0.609300 | 7.4:-36027284 | None:intergenic |
| CAAGCGGCTAGAGTAACAGC+AGG | 0.610811 | 7.4:+36025555 | MS.gene98788:CDS |
| CGCTTGAAGATCCCTCCCAA+TGG | 0.611728 | 7.4:-36025538 | None:intergenic |
| TATTCACAGGAATGTTAGGA+GGG | 0.613060 | 7.4:+36026883 | MS.gene98788:CDS |
| TTAATCGCATTTCGTGTGAA+CGG | 0.618791 | 7.4:-36025773 | None:intergenic |
| AAACCCTTGATAGTTCATGT+TGG | 0.620136 | 7.4:+36025885 | MS.gene98788:CDS |
| ATTTCGTGTGAACGGAATCG+TGG | 0.620865 | 7.4:-36025765 | None:intergenic |
| TTGGAAGGCAGCCACACGAA+AGG | 0.624568 | 7.4:+36027196 | MS.gene98788:CDS |
| GTCATAATAAGTCACCTGTA+CGG | 0.625754 | 7.4:-36026127 | None:intergenic |
| AAAGAGTTGAGAGAAACCAT+AGG | 0.627134 | 7.4:+36027140 | MS.gene98788:CDS |
| CATGTCTTCGGGGATACCTG+TGG | 0.630437 | 7.4:+36026992 | MS.gene98788:CDS |
| TTTCTTGCGCCAGAACCAGA+TGG | 0.633203 | 7.4:-36027243 | None:intergenic |
| CATTGGGAGGGATCTTCAAG+CGG | 0.642986 | 7.4:+36025539 | MS.gene98788:CDS |
| ATTCACAGGAATGTTAGGAG+GGG | 0.648550 | 7.4:+36026884 | MS.gene98788:CDS |
| GTCTTCGGGGATACCTGTGG+TGG | 0.652844 | 7.4:+36026995 | MS.gene98788:CDS |
| GCTAGTGAAACCGATGTGGT+TGG | 0.662309 | 7.4:+36025381 | None:intergenic |
| AGGTTATCTCTATAATCCAG+GGG | 0.701223 | 7.4:+36027073 | MS.gene98788:CDS |
| GTACTTATGACCAACCACAT+CGG | 0.712969 | 7.4:-36025391 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAATATATCTTTCAT+AGG | + | chr7.4:36026003-36026022 | MS.gene98788:intron | 15.0% |
| !! | AATAACGAAAAAATGACAAA+AGG | - | chr7.4:36025813-36025832 | None:intergenic | 20.0% |
| !! | ATAAACAATTATGAGTGTTT+GGG | + | chr7.4:36026352-36026371 | MS.gene98788:intron | 20.0% |
| !! | ATGAAATGGAAAAATTTGAT+TGG | + | chr7.4:36027177-36027196 | MS.gene98788:CDS | 20.0% |
| !! | ATTGTTAAATATGAACACTT+CGG | + | chr7.4:36026785-36026804 | MS.gene98788:intron | 20.0% |
| !! | GAACACAAATTATACTTTAT+AGG | + | chr7.4:36026457-36026476 | MS.gene98788:intron | 20.0% |
| !! | GTTTAAATATAAGCATTTCT+CGG | + | chr7.4:36025632-36025651 | MS.gene98788:intron | 20.0% |
| !! | TTTCTTTGATTATACTTTCT+AGG | + | chr7.4:36026507-36026526 | MS.gene98788:intron | 20.0% |
| !!! | ATTAGCTTAAAAGAACTTAT+AGG | - | chr7.4:36026411-36026430 | None:intergenic | 20.0% |
| !!! | CTTTTAAGCTAATTTCAATA+AGG | + | chr7.4:36026418-36026437 | MS.gene98788:intron | 20.0% |
| ! | AAAATATTGAGAATGAGATG+TGG | - | chr7.4:36026725-36026744 | None:intergenic | 25.0% |
| ! | AATGGAAAAATTTGATTGGA+AGG | + | chr7.4:36027181-36027200 | MS.gene98788:CDS | 25.0% |
| ! | ATATAAAACGACTAGATAAG+AGG | - | chr7.4:36025593-36025612 | None:intergenic | 25.0% |
| ! | ATTTGTGTTCATAAGCTATT+TGG | - | chr7.4:36026447-36026466 | None:intergenic | 25.0% |
| ! | CATAAACAATTATGAGTGTT+TGG | + | chr7.4:36026351-36026370 | MS.gene98788:intron | 25.0% |
| ! | GGATAAACAACTTAATTAAG+CGG | - | chr7.4:36026636-36026655 | None:intergenic | 25.0% |
| ! | TTCCATCTCAAATCATATAA+TGG | + | chr7.4:36026237-36026256 | MS.gene98788:intron | 25.0% |
| !! | ACAAATATTTGAGACCATAT+AGG | - | chr7.4:36025441-36025460 | None:intergenic | 25.0% |
| !! | ACAATTTTCATTATCTAGAG+AGG | - | chr7.4:36026770-36026789 | None:intergenic | 25.0% |
| !! | CAATTTTCATTATCTAGAGA+GGG | - | chr7.4:36026769-36026788 | None:intergenic | 25.0% |
| !! | TGTGAGCATATCATAAATTT+TGG | + | chr7.4:36025458-36025477 | MS.gene98788:intron | 25.0% |
| !! | TTTCATGTTTAGAACATGTT+TGG | + | chr7.4:36026290-36026309 | MS.gene98788:intron | 25.0% |
| !!! | AAGAGTTTAGGTTTTATCAA+AGG | + | chr7.4:36025924-36025943 | MS.gene98788:CDS | 25.0% |
| !!! | AGAGTTTAGGTTTTATCAAA+GGG | + | chr7.4:36025925-36025944 | MS.gene98788:CDS | 25.0% |
| !!! | TTGCTTACTTTTTTCCTATA+TGG | + | chr7.4:36025424-36025443 | MS.gene98788:intron | 25.0% |
| AATCCTCAAAAGAAAGAGAA+AGG | - | chr7.4:36026667-36026686 | None:intergenic | 30.0% | |
| ATCCTCAAAAGAAAGAGAAA+GGG | - | chr7.4:36026666-36026685 | None:intergenic | 30.0% | |
| CAACTTAATTAAGCGGTTAT+CGG | - | chr7.4:36026629-36026648 | None:intergenic | 30.0% | |
| GACTTCTGAACAGTTTATTT+GGG | + | chr7.4:36026316-36026335 | MS.gene98788:intron | 30.0% | |
| GATGATTTCTTTAACTACCA+GGG | + | chr7.4:36026824-36026843 | MS.gene98788:intron | 30.0% | |
| TATTATTGAGACCCTTACAA+TGG | + | chr7.4:36027273-36027292 | MS.gene98788:CDS | 30.0% | |
| TGACTTCTGAACAGTTTATT+TGG | + | chr7.4:36026315-36026334 | MS.gene98788:intron | 30.0% | |
| TGATGATTTCTTTAACTACC+AGG | + | chr7.4:36026823-36026842 | MS.gene98788:intron | 30.0% | |
| ! | CGAGAAATTCCATTTTATGA+TGG | - | chr7.4:36026270-36026289 | None:intergenic | 30.0% |
| ! | TATATGATTTGAGATGGAAG+AGG | - | chr7.4:36026236-36026255 | None:intergenic | 30.0% |
| ! | TCGTTTTATATATGCTTAGC+TGG | + | chr7.4:36025602-36025621 | MS.gene98788:intron | 30.0% |
| !! | TATAGTTAACTTGTGGTGAT+GGG | - | chr7.4:36027316-36027335 | None:intergenic | 30.0% |
| !! | TTCCATTTTATGATGGTGAT+TGG | - | chr7.4:36026263-36026282 | None:intergenic | 30.0% |
| !! | TTCTCTTTCTTTTGAGGATT+TGG | + | chr7.4:36026667-36026686 | MS.gene98788:intron | 30.0% |
| AAAAGCTGCACGTAATGAAA+TGG | + | chr7.4:36027163-36027182 | MS.gene98788:CDS | 35.0% | |
| AAAGAGTTGAGAGAAACCAT+AGG | + | chr7.4:36027140-36027159 | MS.gene98788:CDS | 35.0% | |
| AACTCTTTGTCGAACAAAAG+GGG | - | chr7.4:36027128-36027147 | None:intergenic | 35.0% | |
| ACAGGTTATCTCTATAATCC+AGG | + | chr7.4:36027071-36027090 | MS.gene98788:CDS | 35.0% | |
| ACGAAATGCGATTAAGACTA+AGG | + | chr7.4:36025781-36025800 | MS.gene98788:CDS | 35.0% | |
| ACGTTTACTGATCCATTGTA+AGG | - | chr7.4:36027288-36027307 | None:intergenic | 35.0% | |
| AGGTTATCTCTATAATCCAG+GGG | + | chr7.4:36027073-36027092 | MS.gene98788:CDS | 35.0% | |
| ATATCTGTTCCAGTTGTGTA+TGG | + | chr7.4:36026164-36026183 | MS.gene98788:intron | 35.0% | |
| ATTATTCCTGCAGATCAAGA+AGG | + | chr7.4:36027044-36027063 | MS.gene98788:CDS | 35.0% | |
| CAACTCTTTGTCGAACAAAA+GGG | - | chr7.4:36027129-36027148 | None:intergenic | 35.0% | |
| CAGGTTATCTCTATAATCCA+GGG | + | chr7.4:36027072-36027091 | MS.gene98788:CDS | 35.0% | |
| CGTTTACTGATCCATTGTAA+GGG | - | chr7.4:36027287-36027306 | None:intergenic | 35.0% | |
| CTTGGAGTTGAAAAGAGTTT+AGG | + | chr7.4:36025912-36025931 | MS.gene98788:CDS | 35.0% | |
| CTTTGTCAATGCAGCAAAAT+TGG | + | chr7.4:36025660-36025679 | MS.gene98788:intron | 35.0% | |
| GAGCTAGAGAAAATGTTTGA+AGG | + | chr7.4:36026849-36026868 | MS.gene98788:CDS | 35.0% | |
| GGCCATTATATGATTTGAGA+TGG | - | chr7.4:36026242-36026261 | None:intergenic | 35.0% | |
| GTCATAATAAGTCACCTGTA+CGG | - | chr7.4:36026130-36026149 | None:intergenic | 35.0% | |
| TATTCACAGGAATGTTAGGA+GGG | + | chr7.4:36026883-36026902 | MS.gene98788:CDS | 35.0% | |
| TCAACTCTTTGTCGAACAAA+AGG | - | chr7.4:36027130-36027149 | None:intergenic | 35.0% | |
| TGATCTGCAGGAATAATATC+TGG | - | chr7.4:36027041-36027060 | None:intergenic | 35.0% | |
| TTAATCGCATTTCGTGTGAA+CGG | - | chr7.4:36025776-36025795 | None:intergenic | 35.0% | |
| ! | AAACCCTTGATAGTTCATGT+TGG | + | chr7.4:36025885-36025904 | MS.gene98788:CDS | 35.0% |
| ! | AATAATATCTGGAATGCCTC+CGG | - | chr7.4:36027030-36027049 | None:intergenic | 35.0% |
| ! | CAGTTTTCATCTTACAGCAA+CGG | + | chr7.4:36025852-36025871 | MS.gene98788:intron | 35.0% |
| !! | AAGATTCGTCTTTGGAACAA+AGG | + | chr7.4:36025720-36025739 | MS.gene98788:CDS | 35.0% |
| !! | CAATTTTGCTGCATTGACAA+AGG | - | chr7.4:36025662-36025681 | None:intergenic | 35.0% |
| !! | CTATAGTTAACTTGTGGTGA+TGG | - | chr7.4:36027317-36027336 | None:intergenic | 35.0% |
| !! | GTATGGCAGCTTTTAACTAA+TGG | + | chr7.4:36026181-36026200 | MS.gene98788:intron | 35.0% |
| !! | TCTTTCTTTTGAGGATTTGG+AGG | + | chr7.4:36026670-36026689 | MS.gene98788:intron | 35.0% |
| AACAATACAATGCTGCCATC+TGG | + | chr7.4:36027228-36027247 | MS.gene98788:CDS | 40.0% | |
| AACATTCCTGTGAATACTGC+AGG | - | chr7.4:36026879-36026898 | None:intergenic | 40.0% | |
| ATTCACAGGAATGTTAGGAG+GGG | + | chr7.4:36026884-36026903 | MS.gene98788:CDS | 40.0% | |
| CAAAGACGAATCTTGTTAGC+TGG | - | chr7.4:36025714-36025733 | None:intergenic | 40.0% | |
| CAGCTAACAAGATTCGTCTT+TGG | + | chr7.4:36025712-36025731 | MS.gene98788:intron | 40.0% | |
| CGTCCAACATGAACTATCAA+GGG | - | chr7.4:36025891-36025910 | None:intergenic | 40.0% | |
| GATTTCTTTAACTACCAGGG+AGG | + | chr7.4:36026827-36026846 | MS.gene98788:intron | 40.0% | |
| GCAGATCAAGAAGGTAAAAC+AGG | + | chr7.4:36027053-36027072 | MS.gene98788:CDS | 40.0% | |
| GCAGTATTCACAGGAATGTT+AGG | + | chr7.4:36026879-36026898 | MS.gene98788:CDS | 40.0% | |
| GGCCAATCACCATCATAAAA+TGG | + | chr7.4:36026258-36026277 | MS.gene98788:intron | 40.0% | |
| GTATTCACAGGAATGTTAGG+AGG | + | chr7.4:36026882-36026901 | MS.gene98788:CDS | 40.0% | |
| TAAAAGCTGCCATACACAAC+TGG | - | chr7.4:36026176-36026195 | None:intergenic | 40.0% | |
| TGAACTATCAAGGGTTTCTC+AGG | - | chr7.4:36025882-36025901 | None:intergenic | 40.0% | |
| TGTCAATGCAGCAAAATTGG+TGG | + | chr7.4:36025663-36025682 | MS.gene98788:intron | 40.0% | |
| TGTTTGACACCTGAACCAAA+TGG | + | chr7.4:36026047-36026066 | MS.gene98788:intron | 40.0% | |
| TTCATTTCGAACCTTTCGTG+TGG | - | chr7.4:36027210-36027229 | None:intergenic | 40.0% | |
| ! | AACACTTGGCTTCGTTGTTT+TGG | + | chr7.4:36026965-36026984 | MS.gene98788:CDS | 40.0% |
| ! | ATTACGTGCAGCTTTTCCTA+TGG | - | chr7.4:36027159-36027178 | None:intergenic | 40.0% |
| ! | CCTTGATAGTTCATGTTGGA+CGG | + | chr7.4:36025889-36025908 | MS.gene98788:CDS | 40.0% |
| ! | GTTTTACCTTCTTGATCTGC+AGG | - | chr7.4:36027053-36027072 | None:intergenic | 40.0% |
| ! | TGCCCTTTCTCTTTCTTTTG+AGG | + | chr7.4:36026661-36026680 | MS.gene98788:intron | 40.0% |
| !! | CTGAACCAAATGGTTTTGCA+GGG | + | chr7.4:36026057-36026076 | MS.gene98788:intron | 40.0% |
| ATAGTTCATGTTGGACGGCT+TGG | + | chr7.4:36025894-36025913 | MS.gene98788:CDS | 45.0% | |
| ATGAAAGCAACTCGAGCTTC+AGG | - | chr7.4:36026097-36026116 | None:intergenic | 45.0% | |
| ATTTCGTGTGAACGGAATCG+TGG | - | chr7.4:36025768-36025787 | None:intergenic | 45.0% | |
| CATGACCCTGCAAAACCATT+TGG | - | chr7.4:36026065-36026084 | None:intergenic | 45.0% | |
| CCGTCCAACATGAACTATCA+AGG | - | chr7.4:36025892-36025911 | None:intergenic | 45.0% | |
| CCTTCAGAGTCAGAAACACT+TGG | + | chr7.4:36026951-36026970 | MS.gene98788:CDS | 45.0% | |
| CTCTCTCAAGCATATGCTAG+TGG | + | chr7.4:36026912-36026931 | MS.gene98788:CDS | 45.0% | |
| GGACTGAAATCTCTAGACAG+AGG | - | chr7.4:36026704-36026723 | None:intergenic | 45.0% | |
| ! | AGAAAGAGAAAGGGCATGCT+TGG | - | chr7.4:36026657-36026676 | None:intergenic | 45.0% |
| ! | CCAAGTGTTTCTGACTCTGA+AGG | - | chr7.4:36026954-36026973 | None:intergenic | 45.0% |
| ! | CCTGCAAAACCATTTGGTTC+AGG | - | chr7.4:36026059-36026078 | None:intergenic | 45.0% |
| ! | GAAGCTCGAGTTGCTTTCAT+CGG | + | chr7.4:36026097-36026116 | MS.gene98788:CDS | 45.0% |
| !! | CAAATGGTTTTGCAGGGTCA+TGG | + | chr7.4:36026063-36026082 | MS.gene98788:intron | 45.0% |
| !! | CCTGAACCAAATGGTTTTGC+AGG | + | chr7.4:36026056-36026075 | MS.gene98788:intron | 45.0% |
| !!! | ACTTGGCTTCGTTGTTTTGG+AGG | + | chr7.4:36026968-36026987 | MS.gene98788:CDS | 45.0% |
| !!! | TGTTTTGGAGGCCATGTCTT+CGG | + | chr7.4:36026980-36026999 | MS.gene98788:CDS | 45.0% |
| AAGCAGTCTTCAAGATCCCC+TGG | - | chr7.4:36027092-36027111 | None:intergenic | 50.0% | |
| CATTGGGAGGGATCTTCAAG+CGG | + | chr7.4:36025539-36025558 | MS.gene98788:CDS | 50.0% | |
| GGTATGCCTGCAGTATTCAC+AGG | + | chr7.4:36026870-36026889 | MS.gene98788:CDS | 50.0% | |
| TTTCTTGCGCCAGAACCAGA+TGG | - | chr7.4:36027246-36027265 | None:intergenic | 50.0% | |
| ! | ACAATGCTGCCATCTGGTTC+TGG | + | chr7.4:36027234-36027253 | MS.gene98788:CDS | 50.0% |
| ! | CGAGTTGCTTTCATCGGAGA+TGG | + | chr7.4:36026103-36026122 | MS.gene98788:CDS | 50.0% |
| !! | CATTTTCTCTAGCTCCTCCC+TGG | - | chr7.4:36026844-36026863 | None:intergenic | 50.0% |
| !! | CTGGTTCTGGCGCAAGAAAA+GGG | + | chr7.4:36027247-36027266 | MS.gene98788:CDS | 50.0% |
| !! | TCTGGTTCTGGCGCAAGAAA+AGG | + | chr7.4:36027246-36027265 | MS.gene98788:CDS | 50.0% |
| !! | TGGTGCCATCTGTTGCCATT+GGG | + | chr7.4:36025523-36025542 | MS.gene98788:CDS | 50.0% |
| !! | TTTTGGAGGCCATGTCTTCG+GGG | + | chr7.4:36026982-36027001 | MS.gene98788:CDS | 50.0% |
| !!! | GTTTTGGAGGCCATGTCTTC+GGG | + | chr7.4:36026981-36027000 | MS.gene98788:CDS | 50.0% |
| CAACAGATGGCACCAGAGTC+AGG | - | chr7.4:36025518-36025537 | None:intergenic | 55.0% | |
| CAAGCGGCTAGAGTAACAGC+AGG | + | chr7.4:36025555-36025574 | MS.gene98788:CDS | 55.0% | |
| CACAGGTATCCCCGAAGACA+TGG | - | chr7.4:36026994-36027013 | None:intergenic | 55.0% | |
| CATGTCTTCGGGGATACCTG+TGG | + | chr7.4:36026992-36027011 | MS.gene98788:CDS | 55.0% | |
| CGCTTGAAGATCCCTCCCAA+TGG | - | chr7.4:36025541-36025560 | None:intergenic | 55.0% | |
| CGTGTGAACGGAATCGTGGA+TGG | - | chr7.4:36025764-36025783 | None:intergenic | 55.0% | |
| GCCATCTGTTGCCATTGGGA+GGG | + | chr7.4:36025527-36025546 | MS.gene98788:CDS | 55.0% | |
| TCATCGGAGATGGACCGTAC+AGG | + | chr7.4:36026113-36026132 | MS.gene98788:CDS | 55.0% | |
| TCCCTCCCAATGGCAACAGA+TGG | - | chr7.4:36025531-36025550 | None:intergenic | 55.0% | |
| TGCCATCTGTTGCCATTGGG+AGG | + | chr7.4:36025526-36025545 | MS.gene98788:CDS | 55.0% | |
| TTGGAAGGCAGCCACACGAA+AGG | + | chr7.4:36027196-36027215 | MS.gene98788:CDS | 55.0% | |
| !! | CTGGTGCCATCTGTTGCCAT+TGG | + | chr7.4:36025522-36025541 | MS.gene98788:CDS | 55.0% |
| CAGAGCAGCTGACCTGACTC+TGG | + | chr7.4:36025503-36025522 | MS.gene98788:CDS | 60.0% | |
| GTCTTCGGGGATACCTGTGG+TGG | + | chr7.4:36026995-36027014 | MS.gene98788:CDS | 60.0% | |
| CCTGTGGTGGCAGCACGCGC+CGG | + | chr7.4:36027008-36027027 | MS.gene98788:CDS | 75.0% | |
| ! | CCGGCGCGTGCTGCCACCAC+AGG | - | chr7.4:36027011-36027030 | None:intergenic | 80.0% |
| ! | GTGGTGGCAGCACGCGCCGG+AGG | + | chr7.4:36027011-36027030 | MS.gene98788:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 36025394 | 36027340 | 36025394 | ID=MS.gene98788 |
| chr7.4 | mRNA | 36025394 | 36027340 | 36025394 | ID=MS.gene98788.t1;Parent=MS.gene98788 |
| chr7.4 | exon | 36025394 | 36025409 | 36025394 | ID=MS.gene98788.t1.exon1;Parent=MS.gene98788.t1 |
| chr7.4 | CDS | 36025394 | 36025409 | 36025394 | ID=cds.MS.gene98788.t1;Parent=MS.gene98788.t1 |
| chr7.4 | exon | 36025493 | 36025576 | 36025493 | ID=MS.gene98788.t1.exon2;Parent=MS.gene98788.t1 |
| chr7.4 | CDS | 36025493 | 36025576 | 36025493 | ID=cds.MS.gene98788.t1;Parent=MS.gene98788.t1 |
| chr7.4 | exon | 36025715 | 36025802 | 36025715 | ID=MS.gene98788.t1.exon3;Parent=MS.gene98788.t1 |
| chr7.4 | CDS | 36025715 | 36025802 | 36025715 | ID=cds.MS.gene98788.t1;Parent=MS.gene98788.t1 |
| chr7.4 | exon | 36025869 | 36025946 | 36025869 | ID=MS.gene98788.t1.exon4;Parent=MS.gene98788.t1 |
| chr7.4 | CDS | 36025869 | 36025946 | 36025869 | ID=cds.MS.gene98788.t1;Parent=MS.gene98788.t1 |
| chr7.4 | exon | 36026078 | 36026134 | 36026078 | ID=MS.gene98788.t1.exon5;Parent=MS.gene98788.t1 |
| chr7.4 | CDS | 36026078 | 36026134 | 36026078 | ID=cds.MS.gene98788.t1;Parent=MS.gene98788.t1 |
| chr7.4 | exon | 36026845 | 36027340 | 36026845 | ID=MS.gene98788.t1.exon6;Parent=MS.gene98788.t1 |
| chr7.4 | CDS | 36026845 | 36027340 | 36026845 | ID=cds.MS.gene98788.t1;Parent=MS.gene98788.t1 |
| Gene Sequence |
| Protein sequence |
