Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99649.t1 | XP_013469863.1 | 90.8 | 347 | 32 | 0 | 1 | 347 | 1 | 347 | 2.20E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99649.t1 | Q5T280 | 47.0 | 300 | 153 | 4 | 49 | 344 | 74 | 371 | 1.1e-67 | 258.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99649.t1 | A0A072VQH5 | 90.8 | 347 | 32 | 0 | 1 | 347 | 1 | 347 | 1.6e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99649 | MS.gene044498 | PPI |
| MS.gene99649 | MS.gene033017 | PPI |
| MS.gene99649 | MS.gene067809 | PPI |
| MS.gene68979 | MS.gene99649 | PPI |
| MS.gene99649 | MS.gene90957 | PPI |
| MS.gene99649 | MS.gene52097 | PPI |
| MS.gene99649 | MS.gene057730 | PPI |
| MS.gene99649 | MS.gene003501 | PPI |
| MS.gene99649 | MS.gene90954 | PPI |
| MS.gene99649 | MS.gene000714 | PPI |
| MS.gene08205 | MS.gene99649 | PPI |
| MS.gene99649 | MS.gene038800 | PPI |
| MS.gene51868 | MS.gene99649 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99649.t1 | MTR_1g105065 | 95.677 | 347 | 15 | 0 | 1 | 347 | 1 | 347 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99649.t1 | AT5G19300 | 68.153 | 314 | 96 | 3 | 34 | 345 | 84 | 395 | 4.08e-155 | 441 |
Find 95 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAGCATTGCTCGGCTTAT+TGG | 0.172731 | 1.4:+80848497 | None:intergenic |
| TCATCGATGTTGCCATTTAT+TGG | 0.179774 | 1.4:+80853714 | None:intergenic |
| AGTTGATGTTGGCTTATTTA+AGG | 0.186095 | 1.4:-80851570 | MS.gene99649:intron |
| TGAGGAAGATGATAACTTTA+AGG | 0.223818 | 1.4:-80849212 | MS.gene99649:intron |
| CCATTTATTGGGTTTGGTTC+AGG | 0.241598 | 1.4:+80853726 | None:intergenic |
| GCCAACCGCAATTTGGATTA+TGG | 0.253118 | 1.4:-80850576 | MS.gene99649:intron |
| TTCTTCCGGGTTCAAGTATT+TGG | 0.255682 | 1.4:+80850619 | None:intergenic |
| CATCGATGTTGCCATTTATT+GGG | 0.278770 | 1.4:+80853715 | None:intergenic |
| CATGGGCGCCAACCGCAATT+TGG | 0.285952 | 1.4:-80850583 | MS.gene99649:CDS |
| TAGGGAAGAAGGAGCATATT+GGG | 0.306398 | 1.4:-80850222 | MS.gene99649:CDS |
| CCTGAACCAAACCCAATAAA+TGG | 0.310870 | 1.4:-80853726 | MS.gene99649:CDS |
| CCCACTCATGTTTGCGCAAA+TGG | 0.317819 | 1.4:+80852989 | None:intergenic |
| ACCAATAAGCCGAGCAATGC+TGG | 0.317878 | 1.4:-80848498 | MS.gene99649:CDS |
| GGCGACAGTAACTCTTCTTC+CGG | 0.318602 | 1.4:+80850605 | None:intergenic |
| AATAAAAGTAATACAGATAA+AGG | 0.356965 | 1.4:-80853274 | MS.gene99649:CDS |
| TTATTCCGCACCGGATAATT+CGG | 0.364342 | 1.4:-80853251 | MS.gene99649:CDS |
| TTTAAATACATGTCCACATC+AGG | 0.364943 | 1.4:-80848705 | MS.gene99649:CDS |
| AGACATTTATTGATTGCCTT+TGG | 0.377473 | 1.4:-80849262 | MS.gene99649:CDS |
| TGCTCCTTCTTCCCTAGGCT+TGG | 0.378296 | 1.4:+80850229 | None:intergenic |
| CTTTGGCGGATTGGCTGGTT+TGG | 0.380876 | 1.4:-80849245 | MS.gene99649:CDS |
| TTGCTCGGCTTATTGGTTCT+TGG | 0.394746 | 1.4:+80848504 | None:intergenic |
| GCATAACAGCTTAAGATTTG+TGG | 0.397795 | 1.4:-80853143 | MS.gene99649:intron |
| ATGTTGCCATTTATTGGGTT+TGG | 0.399709 | 1.4:+80853720 | None:intergenic |
| AGCTTGAAATACCATCCTTC+AGG | 0.412173 | 1.4:-80849964 | MS.gene99649:intron |
| TTGAGACACCTCAGTATTTG+AGG | 0.414769 | 1.4:-80853183 | MS.gene99649:CDS |
| CAATATGCTCCTTCTTCCCT+AGG | 0.415928 | 1.4:+80850224 | None:intergenic |
| GCGACAGTAACTCTTCTTCC+GGG | 0.421324 | 1.4:+80850606 | None:intergenic |
| CTAGGGAAGAAGGAGCATAT+TGG | 0.429341 | 1.4:-80850223 | MS.gene99649:CDS |
| ATTGCCTTTGGCGGATTGGC+TGG | 0.434730 | 1.4:-80849250 | MS.gene99649:CDS |
| ACATGAGTGGGGTCCGTATC+GGG | 0.438663 | 1.4:-80852977 | MS.gene99649:CDS |
| TATTGGGTTTGGTTCAGGTT+CGG | 0.453688 | 1.4:+80853731 | None:intergenic |
| CAAATTGCGGTTGGCGCCCA+TGG | 0.453787 | 1.4:+80850584 | None:intergenic |
| TTCGGATGATGAAAGTAGTT+CGG | 0.454347 | 1.4:-80853233 | MS.gene99649:CDS |
| ATTGATTGCCTTTGGCGGAT+TGG | 0.456827 | 1.4:-80849254 | MS.gene99649:CDS |
| AATCTTAAGCTGTTATGCAT+TGG | 0.463655 | 1.4:+80853148 | None:intergenic |
| CAACTCTTGAACTCGCTACT+CGG | 0.468723 | 1.4:-80853587 | MS.gene99649:CDS |
| CATTTATTGATTGCCTTTGG+CGG | 0.469674 | 1.4:-80849259 | MS.gene99649:CDS |
| CATTAGCAACCTCATTGATT+CGG | 0.476477 | 1.4:+80853414 | None:intergenic |
| CTTTCATCATCCGAATTATC+CGG | 0.480182 | 1.4:+80853241 | None:intergenic |
| AGTTGGAACGTTGTCAATGA+TGG | 0.483106 | 1.4:+80853605 | None:intergenic |
| ACCATAATCCAAATTGCGGT+TGG | 0.503863 | 1.4:+80850575 | None:intergenic |
| AACATGAGTGGGGTCCGTAT+CGG | 0.504197 | 1.4:-80852978 | MS.gene99649:CDS |
| AAGAAAGACATTCAAACTCC+GGG | 0.512731 | 1.4:-80851601 | MS.gene99649:CDS |
| TCATCCAAGCCTAGGGAAGA+AGG | 0.513329 | 1.4:-80850233 | MS.gene99649:CDS |
| AACATCAACTAGCGTTGCCC+CGG | 0.521910 | 1.4:+80851583 | None:intergenic |
| AAAGAAAGACATTCAAACTC+CGG | 0.529826 | 1.4:-80851602 | MS.gene99649:CDS |
| GGGGCAACGCTAGTTGATGT+TGG | 0.530539 | 1.4:-80851581 | MS.gene99649:CDS |
| TTGTCTCATCATCCAAGCCT+AGG | 0.537203 | 1.4:-80850241 | MS.gene99649:CDS |
| CCATTTGCGCAAACATGAGT+GGG | 0.538873 | 1.4:-80852989 | MS.gene99649:CDS |
| AACTCTTGAACTCGCTACTC+GGG | 0.543550 | 1.4:-80853586 | MS.gene99649:intron |
| GCAAATGGTGTGGAGCATCA+AGG | 0.551811 | 1.4:+80853004 | None:intergenic |
| GATTACCATAATCCAAATTG+CGG | 0.555577 | 1.4:+80850571 | None:intergenic |
| CCAATAAGCCGAGCAATGCT+GGG | 0.556012 | 1.4:-80848497 | MS.gene99649:CDS |
| AAGAAGAGTTACTGTCGCCA+TGG | 0.560843 | 1.4:-80850601 | MS.gene99649:CDS |
| AACGTTGTCAATGATGGAAG+CGG | 0.563328 | 1.4:+80853611 | None:intergenic |
| AAAGACCTACCTTCCCGATA+CGG | 0.564821 | 1.4:+80852964 | None:intergenic |
| GGTGGCTATGATTGTATAGT+CGG | 0.570409 | 1.4:-80850022 | MS.gene99649:CDS |
| ATACTCAACCCAGCATTGCT+CGG | 0.573303 | 1.4:+80848489 | None:intergenic |
| CAAATGGTGTGGAGCATCAA+GGG | 0.574406 | 1.4:+80853005 | None:intergenic |
| ATTGTTCGACTCCCCTGATG+TGG | 0.576891 | 1.4:+80848692 | None:intergenic |
| ACGTTGTCAATGATGGAAGC+GGG | 0.580301 | 1.4:+80853612 | None:intergenic |
| AGAAGAGTTACTGTCGCCAT+GGG | 0.580848 | 1.4:-80850600 | MS.gene99649:CDS |
| GAGGTGTCTCAAGATACTGC+AGG | 0.581605 | 1.4:+80853194 | None:intergenic |
| GGGAACAGCTATGCTGACAG+TGG | 0.586260 | 1.4:+80853632 | None:intergenic |
| GAAGAAGCAGCGGCTGACAA+CGG | 0.589419 | 1.4:-80853763 | MS.gene99649:CDS |
| CGAGTAGCGAGTTCAAGAGT+TGG | 0.592023 | 1.4:+80853588 | None:intergenic |
| TGGTTTGGAAGAGAGTATTG+AGG | 0.599758 | 1.4:-80849230 | MS.gene99649:CDS |
| AGATAAAGGTTATTCCGCAC+CGG | 0.600115 | 1.4:-80853260 | MS.gene99649:CDS |
| TGTCTCATCATCCAAGCCTA+GGG | 0.600351 | 1.4:-80850240 | MS.gene99649:CDS |
| ACCATTTGCGCAAACATGAG+TGG | 0.600994 | 1.4:-80852990 | MS.gene99649:CDS |
| AAACATGAGCACCTGAAGGA+TGG | 0.601594 | 1.4:+80849953 | None:intergenic |
| GACACCTCAGTATTTGAGGA+AGG | 0.603915 | 1.4:-80853179 | MS.gene99649:CDS |
| TTAAATACATGTCCACATCA+GGG | 0.610146 | 1.4:-80848704 | MS.gene99649:CDS |
| ATTTAATGAATGTACATACA+AGG | 0.623297 | 1.4:-80850162 | MS.gene99649:intron |
| TCATGTTTGCGCAAATGGTG+TGG | 0.628666 | 1.4:+80852994 | None:intergenic |
| GGAACAGCTATGCTGACAGT+GGG | 0.628924 | 1.4:+80853633 | None:intergenic |
| GATGATGAGACAACCTCGCG+TGG | 0.636166 | 1.4:+80850251 | None:intergenic |
| CAAACCAGCCAATCCGCCAA+AGG | 0.636167 | 1.4:+80849246 | None:intergenic |
| TCATCTAGATTTACCACGCG+AGG | 0.636923 | 1.4:-80850264 | MS.gene99649:intron |
| TAAATACATGTCCACATCAG+GGG | 0.639657 | 1.4:-80848703 | MS.gene99649:CDS |
| AAATGGTGTGGAGCATCAAG+GGG | 0.640817 | 1.4:+80853006 | None:intergenic |
| AGGGAAGAAGGAGCATATTG+GGG | 0.647186 | 1.4:-80850221 | MS.gene99649:CDS |
| ATCATCCGAATTATCCGGTG+CGG | 0.653728 | 1.4:+80853246 | None:intergenic |
| GAGTGGGGTCCGTATCGGGA+AGG | 0.653942 | 1.4:-80852973 | MS.gene99649:intron |
| ATAGTCGGTACCTCTGAGCA+TGG | 0.660543 | 1.4:-80850007 | MS.gene99649:CDS |
| TGGTGTGGAGCATCAAGGGG+TGG | 0.663049 | 1.4:+80853009 | None:intergenic |
| TGGGGAAGAAGAAGAAGCAG+CGG | 0.683363 | 1.4:-80853773 | MS.gene99649:CDS |
| TAAGAAGAACAAATCAAACA+AGG | 0.684805 | 1.4:-80853661 | MS.gene99649:CDS |
| AGAGCCTTCCTCAAATACTG+AGG | 0.688667 | 1.4:+80853175 | None:intergenic |
| GAGTCGAACAATTCGAACAG+AGG | 0.692468 | 1.4:-80848681 | MS.gene99649:intron |
| GTTGACCAAATACTTGAACC+CGG | 0.705221 | 1.4:-80850624 | MS.gene99649:CDS |
| ATTGATTCGGAAAATAGTCG+CGG | 0.716272 | 1.4:+80853427 | None:intergenic |
| AATAATCTGACCATGCTCAG+AGG | 0.716636 | 1.4:+80849997 | None:intergenic |
| AGAAAGACATTCAAACTCCG+GGG | 0.724344 | 1.4:-80851600 | MS.gene99649:CDS |
| CATTTGCGCAAACATGAGTG+GGG | 0.732835 | 1.4:-80852988 | MS.gene99649:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATAAAACTTAAAA+AGG | + | chr1.4:80852853-80852872 | None:intergenic | 10.0% |
| !! | AAGTAAAAAAAGTAAAAAAT+TGG | + | chr1.4:80850754-80850773 | None:intergenic | 10.0% |
| !! | AAATACAAAGAGAATTTAAA+GGG | + | chr1.4:80850777-80850796 | None:intergenic | 15.0% |
| !! | AATAAAAGTAATACAGATAA+AGG | - | chr1.4:80848993-80849012 | MS.gene99649:intron | 15.0% |
| !! | ATTATTATTGTTAAATTGCT+TGG | - | chr1.4:80852355-80852374 | MS.gene99649:intron | 15.0% |
| !! | TAATAATGTTACTATTAACT+AGG | - | chr1.4:80851565-80851584 | MS.gene99649:intron | 15.0% |
| !! | TTATTATTGTTAAATTGCTT+GGG | - | chr1.4:80852356-80852375 | MS.gene99649:intron | 15.0% |
| !!! | AATGAAAGTAATTTTGAAAT+GGG | + | chr1.4:80848709-80848728 | None:intergenic | 15.0% |
| !!! | TAAAATTAACGTTTTTGTTA+TGG | + | chr1.4:80848733-80848752 | None:intergenic | 15.0% |
| !!! | TAATTTATAATTTTATGCTC+AGG | - | chr1.4:80849469-80849488 | MS.gene99649:intron | 15.0% |
| !!! | TATATTCTATTTTTCTTGTT+AGG | - | chr1.4:80849617-80849636 | MS.gene99649:intron | 15.0% |
| !! | AAAAATGTAAAGGAAATTCA+TGG | - | chr1.4:80849362-80849381 | MS.gene99649:intron | 20.0% |
| !! | AAAATTTATATTTAGCACCA+TGG | + | chr1.4:80853474-80853493 | None:intergenic | 20.0% |
| !! | AAAGAAAACTTCAAAATCAT+AGG | + | chr1.4:80851861-80851880 | None:intergenic | 20.0% |
| !! | AAATTATCAGTACTAATCAT+TGG | + | chr1.4:80849455-80849474 | None:intergenic | 20.0% |
| !! | AACATTATTAGAACAAAATC+TGG | + | chr1.4:80851555-80851574 | None:intergenic | 20.0% |
| !! | ATAGATTAATAGGAAAACAA+TGG | + | chr1.4:80852461-80852480 | None:intergenic | 20.0% |
| !! | ATATATTTCAAAACTTTCCA+TGG | + | chr1.4:80849657-80849676 | None:intergenic | 20.0% |
| !! | ATATTAGAATATTCTTGAAC+AGG | - | chr1.4:80851212-80851231 | MS.gene99649:intron | 20.0% |
| !! | ATCTAAATCACAATATAACA+AGG | + | chr1.4:80849545-80849564 | None:intergenic | 20.0% |
| !! | ATTTAATGAATGTACATACA+AGG | - | chr1.4:80852105-80852124 | MS.gene99649:intron | 20.0% |
| !! | ATTTATAGATTATTAGAGTG+TGG | - | chr1.4:80851035-80851054 | MS.gene99649:intron | 20.0% |
| !! | ATTTGCAATAATAACTTCTT+AGG | - | chr1.4:80850632-80850651 | MS.gene99649:CDS | 20.0% |
| !! | CAAATTAAAATCGAAGAAAA+GGG | + | chr1.4:80850986-80851005 | None:intergenic | 20.0% |
| !! | CATTATATATGTGATTATTG+CGG | - | chr1.4:80853091-80853110 | MS.gene99649:intron | 20.0% |
| !! | CGAAAAGAAAATAGATTAAT+AGG | + | chr1.4:80852471-80852490 | None:intergenic | 20.0% |
| !! | GAAATACAAAGAGAATTTAA+AGG | + | chr1.4:80850778-80850797 | None:intergenic | 20.0% |
| !! | TCAAATTAAAATCGAAGAAA+AGG | + | chr1.4:80850987-80851006 | None:intergenic | 20.0% |
| !! | TCTAAATCACAATATAACAA+GGG | + | chr1.4:80849544-80849563 | None:intergenic | 20.0% |
| !! | TGAACAAGTTTATTAATTCT+GGG | - | chr1.4:80852417-80852436 | MS.gene99649:intron | 20.0% |
| !! | TTATTTATGTGTGTATGAAT+AGG | - | chr1.4:80848956-80848975 | MS.gene99649:intron | 20.0% |
| !! | TTGAACAAGTTTATTAATTC+TGG | - | chr1.4:80852416-80852435 | MS.gene99649:intron | 20.0% |
| !!! | AAATCTGGAATAAATTCATT+TGG | - | chr1.4:80850091-80850110 | MS.gene99649:intron | 20.0% |
| !!! | ATGATTTTGAAGTTTTCTTT+TGG | - | chr1.4:80851861-80851880 | MS.gene99649:intron | 20.0% |
| !!! | ATGGAAAGTTTTGAAATATA+TGG | - | chr1.4:80849656-80849675 | MS.gene99649:intron | 20.0% |
| !!! | CAATGAAAGTAATTTTGAAA+TGG | + | chr1.4:80848710-80848729 | None:intergenic | 20.0% |
| !!! | CAGCAATTTTTTTTTAAACT+CGG | + | chr1.4:80851464-80851483 | None:intergenic | 20.0% |
| !!! | GAGGATTCATTTTTTTTTTA+GGG | + | chr1.4:80853697-80853716 | None:intergenic | 20.0% |
| !!! | TGAGGATTCATTTTTTTTTT+AGG | + | chr1.4:80853698-80853717 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAGTTTTCTTTT+GGG | - | chr1.4:80851862-80851881 | MS.gene99649:intron | 20.0% |
| !!! | TTTTTTAGGGAAAAAATATG+AGG | + | chr1.4:80853684-80853703 | None:intergenic | 20.0% |
| ! | AAAAAATGCCAAATTGAAAG+AGG | + | chr1.4:80851805-80851824 | None:intergenic | 25.0% |
| ! | AAATGAGTTTATGGAAACTT+TGG | - | chr1.4:80850300-80850319 | MS.gene99649:intron | 25.0% |
| ! | AAATTCATTTGGTTGAAAGT+TGG | - | chr1.4:80850102-80850121 | MS.gene99649:intron | 25.0% |
| ! | AAATTTATGGAATCTCTGAT+TGG | + | chr1.4:80853132-80853151 | None:intergenic | 25.0% |
| ! | AACAGTAAATGAAACTATAG+TGG | - | chr1.4:80851259-80851278 | MS.gene99649:intron | 25.0% |
| ! | AAGGAAAATGTAAGAGAAAT+AGG | + | chr1.4:80850963-80850982 | None:intergenic | 25.0% |
| ! | AAGGGAAATGAAAAAGAAAA+AGG | + | chr1.4:80850800-80850819 | None:intergenic | 25.0% |
| ! | AATAAATTAATCATCGCAAC+TGG | + | chr1.4:80850338-80850357 | None:intergenic | 25.0% |
| ! | AATAGGCTATGGATATTAAA+AGG | + | chr1.4:80852162-80852181 | None:intergenic | 25.0% |
| ! | AATTCTAAATAGTGTAGGTT+TGG | + | chr1.4:80853256-80853275 | None:intergenic | 25.0% |
| ! | ACATGAGATTAAAGTTATCA+GGG | - | chr1.4:80852577-80852596 | MS.gene99649:intron | 25.0% |
| ! | ACTTGAATTCTAAATAGTGT+AGG | + | chr1.4:80853261-80853280 | None:intergenic | 25.0% |
| ! | AGAAAGGAAAAAGATTAAAC+CGG | + | chr1.4:80850446-80850465 | None:intergenic | 25.0% |
| ! | AGAATTTCTAATTTCTGTAG+TGG | - | chr1.4:80849336-80849355 | MS.gene99649:intron | 25.0% |
| ! | ATACATTTCACAAGATTTCT+TGG | - | chr1.4:80850727-80850746 | MS.gene99649:intron | 25.0% |
| ! | ATATTGTCATTGTGTTATCA+AGG | + | chr1.4:80851890-80851909 | None:intergenic | 25.0% |
| ! | ATCAGTTGCATTATAATGTT+TGG | + | chr1.4:80852817-80852836 | None:intergenic | 25.0% |
| ! | ATTCAGCTTAAGAAAAAGAA+AGG | - | chr1.4:80853447-80853466 | MS.gene99649:CDS | 25.0% |
| ! | CATAAATTTGACAGAATCAT+CGG | - | chr1.4:80853143-80853162 | MS.gene99649:intron | 25.0% |
| ! | CATGTAAAAGATATGAAATC+TGG | - | chr1.4:80850076-80850095 | MS.gene99649:intron | 25.0% |
| ! | CGAGTTTAAAAAAAAATTGC+TGG | - | chr1.4:80851462-80851481 | MS.gene99649:intron | 25.0% |
| ! | CGCAATAATCACATATATAA+TGG | + | chr1.4:80853093-80853112 | None:intergenic | 25.0% |
| ! | CTAAATCACAATATAACAAG+GGG | + | chr1.4:80849543-80849562 | None:intergenic | 25.0% |
| ! | GGAAGAATGATTTAAATTCT+GGG | - | chr1.4:80849383-80849402 | MS.gene99649:intron | 25.0% |
| ! | GTTTAGTATGTGTTTAATGT+TGG | - | chr1.4:80849204-80849223 | MS.gene99649:intron | 25.0% |
| ! | TAAGAAGAACAAATCAAACA+AGG | - | chr1.4:80848606-80848625 | MS.gene99649:intron | 25.0% |
| ! | TACATTTCACAAGATTTCTT+GGG | - | chr1.4:80850728-80850747 | MS.gene99649:intron | 25.0% |
| ! | TCCTATAAAAGAAAAACATG+AGG | + | chr1.4:80853716-80853735 | None:intergenic | 25.0% |
| ! | TGACAAGTAAACAAAAGAAA+GGG | + | chr1.4:80852216-80852235 | None:intergenic | 25.0% |
| ! | TGGAAGAATGATTTAAATTC+TGG | - | chr1.4:80849382-80849401 | MS.gene99649:intron | 25.0% |
| ! | TTGACAAGTAAACAAAAGAA+AGG | + | chr1.4:80852217-80852236 | None:intergenic | 25.0% |
| !! | AAATATATATGTGATGATGC+AGG | - | chr1.4:80852933-80852952 | MS.gene99649:intron | 25.0% |
| !! | AATTTTCATGTCAGTTTGAT+AGG | + | chr1.4:80849769-80849788 | None:intergenic | 25.0% |
| !! | TCATGTTTTTCTTTTATAGG+AGG | - | chr1.4:80853715-80853734 | MS.gene99649:CDS | 25.0% |
| !! | TCCTCATGTTTTTCTTTTAT+AGG | - | chr1.4:80853712-80853731 | MS.gene99649:CDS | 25.0% |
| !! | TTAATGTTGGTTGTTTGTAT+TGG | - | chr1.4:80849217-80849236 | MS.gene99649:CDS | 25.0% |
| !!! | ATGGAAAGAAGTTATTTTGA+AGG | - | chr1.4:80850224-80850243 | MS.gene99649:CDS | 25.0% |
| !!! | GCAGGTGTTTTTATTTAAAT+TGG | - | chr1.4:80852951-80852970 | MS.gene99649:intron | 25.0% |
| !!! | TGGAAAGAAGTTATTTTGAA+GGG | - | chr1.4:80850225-80850244 | MS.gene99649:CDS | 25.0% |
| !!! | TTCATTGTGTTGGTTATTTA+AGG | - | chr1.4:80850480-80850499 | MS.gene99649:intron | 25.0% |
| !!! | TTTTTTTTAAACTCGGTATC+TGG | + | chr1.4:80851457-80851476 | None:intergenic | 25.0% |
| AAAGAAAGACATTCAAACTC+CGG | - | chr1.4:80850665-80850684 | MS.gene99649:intron | 30.0% | |
| AATAGTAGCATATAGAAAGC+GGG | - | chr1.4:80851509-80851528 | MS.gene99649:intron | 30.0% | |
| AATCTTAAGCTGTTATGCAT+TGG | + | chr1.4:80849122-80849141 | None:intergenic | 30.0% | |
| AATGAACAGTGTTATCGAAT+CGG | - | chr1.4:80849826-80849845 | MS.gene99649:intron | 30.0% | |
| AATTGCAATGTATCAAAACC+TGG | + | chr1.4:80850615-80850634 | None:intergenic | 30.0% | |
| ACTAGAAAGCAGAAATTCTT+GGG | - | chr1.4:80851299-80851318 | MS.gene99649:intron | 30.0% | |
| ACTATGCAACTGAATAACTA+TGG | - | chr1.4:80851154-80851173 | MS.gene99649:intron | 30.0% | |
| AGAATATTCTTGAACAGGTT+AGG | - | chr1.4:80851217-80851236 | MS.gene99649:intron | 30.0% | |
| AGGTTGTCATTGAAAAAACA+AGG | + | chr1.4:80850819-80850838 | None:intergenic | 30.0% | |
| ATAAAACTACAATGCCATAG+AGG | - | chr1.4:80849794-80849813 | MS.gene99649:intron | 30.0% | |
| ATAATAAGATGTCCTTGAGA+AGG | + | chr1.4:80850839-80850858 | None:intergenic | 30.0% | |
| ATGATAGGAAAAACACTTGT+GGG | + | chr1.4:80852707-80852726 | None:intergenic | 30.0% | |
| ATTTGGTTGAAAGTTGGAAT+CGG | - | chr1.4:80850108-80850127 | MS.gene99649:intron | 30.0% | |
| CAATAGTAGCATATAGAAAG+CGG | - | chr1.4:80851508-80851527 | MS.gene99649:intron | 30.0% | |
| CAATGTGTGGTTCAAATTAA+CGG | + | chr1.4:80849710-80849729 | None:intergenic | 30.0% | |
| CACATGAGATTAAAGTTATC+AGG | - | chr1.4:80852576-80852595 | MS.gene99649:intron | 30.0% | |
| CATGAGATTAAAGTTATCAG+GGG | - | chr1.4:80852578-80852597 | MS.gene99649:intron | 30.0% | |
| CCATAAACTCATTTAGAGAA+AGG | + | chr1.4:80850294-80850313 | None:intergenic | 30.0% | |
| CCTTTCTCTAAATGAGTTTA+TGG | - | chr1.4:80850291-80850310 | MS.gene99649:intron | 30.0% | |
| CGATGATTCTGTCAAATTTA+TGG | + | chr1.4:80853145-80853164 | None:intergenic | 30.0% | |
| CTTAATAACGAAATCATGAC+TGG | - | chr1.4:80850140-80850159 | MS.gene99649:intron | 30.0% | |
| GAAAGGAAAAAGATTAAACC+GGG | + | chr1.4:80850445-80850464 | None:intergenic | 30.0% | |
| GATTACCATAATCCAAATTG+CGG | + | chr1.4:80851699-80851718 | None:intergenic | 30.0% | |
| GATTTAGATCTAATCGATGA+TGG | - | chr1.4:80849556-80849575 | MS.gene99649:intron | 30.0% | |
| GGTGAGAAAATCAAATCAAA+TGG | - | chr1.4:80850205-80850224 | MS.gene99649:CDS | 30.0% | |
| GGTTGTCATTGAAAAAACAA+GGG | + | chr1.4:80850818-80850837 | None:intergenic | 30.0% | |
| GTATAGTGAATCAGATCATA+TGG | + | chr1.4:80851604-80851623 | None:intergenic | 30.0% | |
| TAAATAGTGTAGGTTTGGAT+TGG | + | chr1.4:80853251-80853270 | None:intergenic | 30.0% | |
| TACTAGAAAGCAGAAATTCT+TGG | - | chr1.4:80851298-80851317 | MS.gene99649:intron | 30.0% | |
| TATAATGCAACTGATGCATA+GGG | - | chr1.4:80852822-80852841 | MS.gene99649:intron | 30.0% | |
| TATGATAGGAAAAACACTTG+TGG | + | chr1.4:80852708-80852727 | None:intergenic | 30.0% | |
| TGAAAACATGTGTCTTTCTA+AGG | - | chr1.4:80853382-80853401 | MS.gene99649:intron | 30.0% | |
| TGAATATTGATGCCAAACTA+CGG | - | chr1.4:80852534-80852553 | MS.gene99649:intron | 30.0% | |
| TGAGGAAGATGATAACTTTA+AGG | - | chr1.4:80853055-80853074 | MS.gene99649:intron | 30.0% | |
| TGTTTGTATTGGAATTTGCA+GGG | - | chr1.4:80849228-80849247 | MS.gene99649:CDS | 30.0% | |
| TTAAAATCGAAGAAAAGGGA+AGG | + | chr1.4:80850982-80851001 | None:intergenic | 30.0% | |
| TTAAATACATGTCCACATCA+GGG | - | chr1.4:80853563-80853582 | MS.gene99649:intron | 30.0% | |
| TTAAGAAAAAGAAAGGACCA+TGG | - | chr1.4:80853454-80853473 | MS.gene99649:intron | 30.0% | |
| TTAATCTCATGTGAACTCTT+GGG | + | chr1.4:80852569-80852588 | None:intergenic | 30.0% | |
| TTATAATGCAACTGATGCAT+AGG | - | chr1.4:80852821-80852840 | MS.gene99649:intron | 30.0% | |
| TTGTTTGTATTGGAATTTGC+AGG | - | chr1.4:80849227-80849246 | MS.gene99649:CDS | 30.0% | |
| TTTAAATACATGTCCACATC+AGG | - | chr1.4:80853562-80853581 | MS.gene99649:intron | 30.0% | |
| TTTAACTGGAAGTTCAATGA+GGG | - | chr1.4:80850912-80850931 | MS.gene99649:intron | 30.0% | |
| TTTAATCTCATGTGAACTCT+TGG | + | chr1.4:80852570-80852589 | None:intergenic | 30.0% | |
| TTTATGTGTGTATGAATAGG+TGG | - | chr1.4:80848959-80848978 | MS.gene99649:intron | 30.0% | |
| ! | AGACATTTATTGATTGCCTT+TGG | - | chr1.4:80853005-80853024 | MS.gene99649:CDS | 30.0% |
| ! | AGTTTATTAATTCTGGGAGA+TGG | - | chr1.4:80852423-80852442 | MS.gene99649:intron | 30.0% |
| !! | AACTTTGCTCTAGCTTTAAA+TGG | - | chr1.4:80851377-80851396 | MS.gene99649:intron | 30.0% |
| !! | ACTTTGCTCTAGCTTTAAAT+GGG | - | chr1.4:80851378-80851397 | MS.gene99649:intron | 30.0% |
| !! | AGCATGCTTTTCTTTTTCAT+TGG | - | chr1.4:80851767-80851786 | MS.gene99649:intron | 30.0% |
| !! | AGTTGATGTTGGCTTATTTA+AGG | - | chr1.4:80850697-80850716 | MS.gene99649:intron | 30.0% |
| !! | GTAGTGGATGAAAAATGTAA+AGG | - | chr1.4:80849352-80849371 | MS.gene99649:intron | 30.0% |
| !! | TCTATGGCATTGTAGTTTTA+TGG | + | chr1.4:80849795-80849814 | None:intergenic | 30.0% |
| !! | TTTTAACTGGAAGTTCAATG+AGG | - | chr1.4:80850911-80850930 | MS.gene99649:intron | 30.0% |
| !! | TTTTCCCTGCATTTTTTAGA+GGG | + | chr1.4:80853516-80853535 | None:intergenic | 30.0% |
| !! | TTTTTCCCTGCATTTTTTAG+AGG | + | chr1.4:80853517-80853536 | None:intergenic | 30.0% |
| !!! | AAAGAAGTTATTTTGAAGGG+AGG | - | chr1.4:80850228-80850247 | MS.gene99649:CDS | 30.0% |
| !!! | TTTGGATATTGGCTTTTAAC+TGG | - | chr1.4:80850898-80850917 | MS.gene99649:intron | 30.0% |
| AAAGAAAATGAGGAGGGAAA+AGG | + | chr1.4:80852772-80852791 | None:intergenic | 35.0% | |
| AACAGCTTAAGATTTGTGGT+TGG | - | chr1.4:80849128-80849147 | MS.gene99649:intron | 35.0% | |
| AAGAAAATGAGGAGGGAAAA+GGG | + | chr1.4:80852771-80852790 | None:intergenic | 35.0% | |
| AAGAAAGACATTCAAACTCC+GGG | - | chr1.4:80850666-80850685 | MS.gene99649:intron | 35.0% | |
| AATGCAGGGAAAAAATGCAA+AGG | - | chr1.4:80853523-80853542 | MS.gene99649:intron | 35.0% | |
| ACTTCTCCTCTAGTATTCTT+AGG | + | chr1.4:80850258-80850277 | None:intergenic | 35.0% | |
| AGCATAAATTCATGTAGCCA+AGG | + | chr1.4:80851965-80851984 | None:intergenic | 35.0% | |
| AGTACATGATATTGAGCCAT+TGG | + | chr1.4:80852604-80852623 | None:intergenic | 35.0% | |
| ATACGCTTCCTCTTTCAATT+TGG | - | chr1.4:80851794-80851813 | MS.gene99649:intron | 35.0% | |
| ATCTGTGTGTGTTAGAAGTA+AGG | - | chr1.4:80850178-80850197 | MS.gene99649:CDS | 35.0% | |
| ATTGCTGGAAACAGAAATTC+AGG | - | chr1.4:80851477-80851496 | MS.gene99649:intron | 35.0% | |
| ATTGGCAAATGTTTAGCTGA+TGG | + | chr1.4:80849437-80849456 | None:intergenic | 35.0% | |
| CCAATATCCAAACAACTACA+TGG | + | chr1.4:80850890-80850909 | None:intergenic | 35.0% | |
| CCATGTAGTTGTTTGGATAT+TGG | - | chr1.4:80850887-80850906 | MS.gene99649:intron | 35.0% | |
| CTTTCATCATCCGAATTATC+CGG | + | chr1.4:80849029-80849048 | None:intergenic | 35.0% | |
| GCATAACAGCTTAAGATTTG+TGG | - | chr1.4:80849124-80849143 | MS.gene99649:intron | 35.0% | |
| GGAAAACCTAAGAATACTAG+AGG | - | chr1.4:80850249-80850268 | MS.gene99649:CDS | 35.0% | |
| GTGTTACACATTTCTGTGTA+AGG | - | chr1.4:80853279-80853298 | MS.gene99649:CDS | 35.0% | |
| GTTAGCAAGCTCATTATGAT+AGG | + | chr1.4:80852722-80852741 | None:intergenic | 35.0% | |
| GTTTACTTGTCAACGTTACA+GGG | - | chr1.4:80852224-80852243 | MS.gene99649:intron | 35.0% | |
| GTTTGTATTGGAATTTGCAG+GGG | - | chr1.4:80849229-80849248 | MS.gene99649:CDS | 35.0% | |
| TAAATACATGTCCACATCAG+GGG | - | chr1.4:80853564-80853583 | MS.gene99649:intron | 35.0% | |
| TAACCAACACAATGAACACT+TGG | + | chr1.4:80850476-80850495 | None:intergenic | 35.0% | |
| TACAGTGGTCGATGAATAAT+AGG | + | chr1.4:80852179-80852198 | None:intergenic | 35.0% | |
| TCTCATACGAAAACATGTCT+TGG | - | chr1.4:80853347-80853366 | MS.gene99649:intron | 35.0% | |
| TGAGAACAGAAAATTCACAC+TGG | + | chr1.4:80852658-80852677 | None:intergenic | 35.0% | |
| TGTTTACTTGTCAACGTTAC+AGG | - | chr1.4:80852223-80852242 | MS.gene99649:intron | 35.0% | |
| TTCATTAGCACTGTTGTCTA+TGG | + | chr1.4:80850005-80850024 | None:intergenic | 35.0% | |
| TTCATTCCAGAATTTCTCCT+TGG | - | chr1.4:80851945-80851964 | MS.gene99649:intron | 35.0% | |
| TTCGGATGATGAAAGTAGTT+CGG | - | chr1.4:80849034-80849053 | MS.gene99649:intron | 35.0% | |
| TTGGCAAATGTTTAGCTGAT+GGG | + | chr1.4:80849436-80849455 | None:intergenic | 35.0% | |
| TTTCAATGACAACCTTCTCA+AGG | - | chr1.4:80850824-80850843 | MS.gene99649:intron | 35.0% | |
| ! | AATCACCCTCTAAAAAATGC+AGG | - | chr1.4:80853508-80853527 | MS.gene99649:intron | 35.0% |
| ! | ATCACCCTCTAAAAAATGCA+GGG | - | chr1.4:80853509-80853528 | MS.gene99649:intron | 35.0% |
| ! | ATGAGTGGAAAGTATAGCAT+TGG | - | chr1.4:80852679-80852698 | MS.gene99649:intron | 35.0% |
| ! | ATGTTGCCATTTATTGGGTT+TGG | + | chr1.4:80848550-80848569 | None:intergenic | 35.0% |
| ! | ATTTTCTGTTCTCACATGAG+TGG | - | chr1.4:80852664-80852683 | MS.gene99649:intron | 35.0% |
| ! | CATCGATGTTGCCATTTATT+GGG | + | chr1.4:80848555-80848574 | None:intergenic | 35.0% |
| ! | CATTAGCAACCTCATTGATT+CGG | + | chr1.4:80848856-80848875 | None:intergenic | 35.0% |
| ! | CATTTATTGATTGCCTTTGG+CGG | - | chr1.4:80853008-80853027 | MS.gene99649:CDS | 35.0% |
| ! | GACTATTTTCCGAATCAATG+AGG | - | chr1.4:80848844-80848863 | MS.gene99649:intron | 35.0% |
| ! | TCATCGATGTTGCCATTTAT+TGG | + | chr1.4:80848556-80848575 | None:intergenic | 35.0% |
| ! | TGAGTGGAAAGTATAGCATT+GGG | - | chr1.4:80852680-80852699 | MS.gene99649:intron | 35.0% |
| !! | AACACTTGGTGTGTTAAGAA+AGG | + | chr1.4:80850462-80850481 | None:intergenic | 35.0% |
| !! | ATTGATTCGGAAAATAGTCG+CGG | + | chr1.4:80848843-80848862 | None:intergenic | 35.0% |
| !!! | AATCGGTGGCAGTTTTTTTT+TGG | - | chr1.4:80849859-80849878 | MS.gene99649:intron | 35.0% |
| !!! | ATCGGTGGCAGTTTTTTTTT+GGG | - | chr1.4:80849860-80849879 | MS.gene99649:intron | 35.0% |
| !!! | GTGTTTTGAGTTTCACTTAC+TGG | - | chr1.4:80852884-80852903 | MS.gene99649:intron | 35.0% |
| !!! | GTTGTCGACTTTTATTGTGT+TGG | - | chr1.4:80850401-80850420 | MS.gene99649:intron | 35.0% |
| !!! | TTTTGATTTCCCTTTTCAGC+TGG | - | chr1.4:80848799-80848818 | MS.gene99649:intron | 35.0% |
| AAAAGAAAGGGTTCGTGAGT+AGG | + | chr1.4:80852204-80852223 | None:intergenic | 40.0% | |
| AACGGACATTAAACACTCCA+TGG | + | chr1.4:80849692-80849711 | None:intergenic | 40.0% | |
| AATAATCTGACCATGCTCAG+AGG | + | chr1.4:80852273-80852292 | None:intergenic | 40.0% | |
| ACACCAAGTGTTCATTGTGT+TGG | - | chr1.4:80850470-80850489 | MS.gene99649:intron | 40.0% | |
| ACCATAATCCAAATTGCGGT+TGG | + | chr1.4:80851695-80851714 | None:intergenic | 40.0% | |
| AGAAAATGAGGAGGGAAAAG+GGG | + | chr1.4:80852770-80852789 | None:intergenic | 40.0% | |
| AGAAAGACATTCAAACTCCG+GGG | - | chr1.4:80850667-80850686 | MS.gene99649:intron | 40.0% | |
| AGATAAAGGTTATTCCGCAC+CGG | - | chr1.4:80849007-80849026 | MS.gene99649:intron | 40.0% | |
| AGCTAGAGCAAAGTTCCATA+TGG | + | chr1.4:80851372-80851391 | None:intergenic | 40.0% | |
| AGCTTGAAATACCATCCTTC+AGG | - | chr1.4:80852303-80852322 | MS.gene99649:intron | 40.0% | |
| AGGAAAAAGATTAAACCGGG+TGG | + | chr1.4:80850442-80850461 | None:intergenic | 40.0% | |
| AGTTGGAACGTTGTCAATGA+TGG | + | chr1.4:80848665-80848684 | None:intergenic | 40.0% | |
| ATGTAGCCAAGGAGAAATTC+TGG | + | chr1.4:80851954-80851973 | None:intergenic | 40.0% | |
| ATTAGCACTGTTGTCTATGG+CGG | + | chr1.4:80850002-80850021 | None:intergenic | 40.0% | |
| CCTGAACCAAACCCAATAAA+TGG | - | chr1.4:80848541-80848560 | MS.gene99649:intron | 40.0% | |
| GAACAGAAAATTCACACTGG+AGG | + | chr1.4:80852655-80852674 | None:intergenic | 40.0% | |
| GAATGTGTTGCAACAGAGAA+AGG | + | chr1.4:80853176-80853195 | None:intergenic | 40.0% | |
| GAATGTTCGACAGTGAGTAT+AGG | - | chr1.4:80850022-80850041 | MS.gene99649:CDS | 40.0% | |
| GGTCGATGAATAATAGGCTA+TGG | + | chr1.4:80852173-80852192 | None:intergenic | 40.0% | |
| GGTGGCTATGATTGTATAGT+CGG | - | chr1.4:80852245-80852264 | MS.gene99649:intron | 40.0% | |
| GGTTCATAGATCGACTAATC+CGG | + | chr1.4:80851436-80851455 | None:intergenic | 40.0% | |
| GTGTGTTAGAAGTAAGGTTG+TGG | - | chr1.4:80850184-80850203 | MS.gene99649:CDS | 40.0% | |
| GTTAAAACATGAGCACCTGA+AGG | + | chr1.4:80852321-80852340 | None:intergenic | 40.0% | |
| GTTGACCAAATACTTGAACC+CGG | - | chr1.4:80851643-80851662 | MS.gene99649:intron | 40.0% | |
| TCATTAGCATAGAGCCTCTA+TGG | + | chr1.4:80849811-80849830 | None:intergenic | 40.0% | |
| TGGCAAATGTTTAGCTGATG+GGG | + | chr1.4:80849435-80849454 | None:intergenic | 40.0% | |
| TTAAAGTTATCAGGGGCCAA+TGG | - | chr1.4:80852585-80852604 | MS.gene99649:intron | 40.0% | |
| TTATTCCGCACCGGATAATT+CGG | - | chr1.4:80849016-80849035 | MS.gene99649:intron | 40.0% | |
| TTCTTCCGGGTTCAAGTATT+TGG | + | chr1.4:80851651-80851670 | None:intergenic | 40.0% | |
| TTGAGACACCTCAGTATTTG+AGG | - | chr1.4:80849084-80849103 | MS.gene99649:intron | 40.0% | |
| TTTAAGCGTTCTCTCTACGT+TGG | - | chr1.4:80852386-80852405 | MS.gene99649:intron | 40.0% | |
| ! | AACGTTGTCAATGATGGAAG+CGG | + | chr1.4:80848659-80848678 | None:intergenic | 40.0% |
| ! | ATTTGACTAGCCAGCTGAAA+AGG | + | chr1.4:80848812-80848831 | None:intergenic | 40.0% |
| ! | CCATTTATTGGGTTTGGTTC+AGG | + | chr1.4:80848544-80848563 | None:intergenic | 40.0% |
| ! | TAGGGAAGAAGGAGCATATT+GGG | - | chr1.4:80852045-80852064 | MS.gene99649:intron | 40.0% |
| ! | TATTAGTCACCCCAGCTTTT+GGG | - | chr1.4:80850354-80850373 | MS.gene99649:intron | 40.0% |
| ! | TATTGGGTTTGGTTCAGGTT+CGG | + | chr1.4:80848539-80848558 | None:intergenic | 40.0% |
| ! | TTATTAGTCACCCCAGCTTT+TGG | - | chr1.4:80850353-80850372 | MS.gene99649:intron | 40.0% |
| ! | TTTGACTAGCCAGCTGAAAA+GGG | + | chr1.4:80848811-80848830 | None:intergenic | 40.0% |
| !! | ATGAGCTTGCTAACAAGCAA+AGG | - | chr1.4:80852728-80852747 | MS.gene99649:intron | 40.0% |
| !! | TGGTTTGGAAGAGAGTATTG+AGG | - | chr1.4:80853037-80853056 | MS.gene99649:intron | 40.0% |
| !!! | ACTTTTGTTGTTTTGCCCCA+TGG | - | chr1.4:80850582-80850601 | MS.gene99649:CDS | 40.0% |
| AAACATGAGCACCTGAAGGA+TGG | + | chr1.4:80852317-80852336 | None:intergenic | 45.0% | |
| AAAGACCTACCTTCCCGATA+CGG | + | chr1.4:80849306-80849325 | None:intergenic | 45.0% | |
| AACTACATGGCAGAGACGAA+CGG | + | chr1.4:80850877-80850896 | None:intergenic | 45.0% | |
| AACTCTTGAACTCGCTACTC+GGG | - | chr1.4:80848681-80848700 | MS.gene99649:intron | 45.0% | |
| AAGAAGAGTTACTGTCGCCA+TGG | - | chr1.4:80851666-80851685 | MS.gene99649:intron | 45.0% | |
| AAGCATTACCCCAAAAGCTG+GGG | + | chr1.4:80850366-80850385 | None:intergenic | 45.0% | |
| ACAGTGCATGTGCATCAAAC+AGG | + | chr1.4:80853198-80853217 | None:intergenic | 45.0% | |
| ACCATTTGCGCAAACATGAG+TGG | - | chr1.4:80849277-80849296 | MS.gene99649:intron | 45.0% | |
| ACTTCAGAAAATGCAGCTGC+AGG | + | chr1.4:80849163-80849182 | None:intergenic | 45.0% | |
| AGAAGAGTTACTGTCGCCAT+GGG | - | chr1.4:80851667-80851686 | MS.gene99649:intron | 45.0% | |
| AGAGCCTTCCTCAAATACTG+AGG | + | chr1.4:80849095-80849114 | None:intergenic | 45.0% | |
| AGCAGAAATTCTTGGGACCT+TGG | - | chr1.4:80851306-80851325 | MS.gene99649:intron | 45.0% | |
| AGGAGAGTAATCGAAAGCCA+TGG | - | chr1.4:80849637-80849656 | MS.gene99649:intron | 45.0% | |
| ATACCCAATTTCGGCCGATA+TGG | - | chr1.4:80849892-80849911 | MS.gene99649:intron | 45.0% | |
| ATATCGGCCGAAATTGGGTA+TGG | + | chr1.4:80849893-80849912 | None:intergenic | 45.0% | |
| ATCATCCGAATTATCCGGTG+CGG | + | chr1.4:80849024-80849043 | None:intergenic | 45.0% | |
| ATGTATCAAAACCTGGCCAG+TGG | + | chr1.4:80850608-80850627 | None:intergenic | 45.0% | |
| CAACTCTTGAACTCGCTACT+CGG | - | chr1.4:80848680-80848699 | MS.gene99649:intron | 45.0% | |
| CAAGCATTACCCCAAAAGCT+GGG | + | chr1.4:80850367-80850386 | None:intergenic | 45.0% | |
| CAATATGCTCCTTCTTCCCT+AGG | + | chr1.4:80852046-80852065 | None:intergenic | 45.0% | |
| CATTTGCGCAAACATGAGTG+GGG | - | chr1.4:80849279-80849298 | MS.gene99649:intron | 45.0% | |
| CCATTTGCGCAAACATGAGT+GGG | - | chr1.4:80849278-80849297 | MS.gene99649:intron | 45.0% | |
| CTCTCCACCATACCCAATTT+CGG | - | chr1.4:80849883-80849902 | MS.gene99649:intron | 45.0% | |
| CTCTGATTGGCAGTAATCGA+GGG | + | chr1.4:80853119-80853138 | None:intergenic | 45.0% | |
| GACACCTCAGTATTTGAGGA+AGG | - | chr1.4:80849088-80849107 | MS.gene99649:intron | 45.0% | |
| GACAGCAGAATCATTCATGC+AGG | + | chr1.4:80849519-80849538 | None:intergenic | 45.0% | |
| GAGTCGAACAATTCGAACAG+AGG | - | chr1.4:80853586-80853605 | MS.gene99649:intron | 45.0% | |
| GCAGAGACGAACGGAAAATA+TGG | + | chr1.4:80850868-80850887 | None:intergenic | 45.0% | |
| GCCAACCGCAATTTGGATTA+TGG | - | chr1.4:80851691-80851710 | MS.gene99649:intron | 45.0% | |
| GGCAAATGTTTAGCTGATGG+GGG | + | chr1.4:80849434-80849453 | None:intergenic | 45.0% | |
| GTCTCTGCCATGTAGTTGTT+TGG | - | chr1.4:80850880-80850899 | MS.gene99649:intron | 45.0% | |
| GTTCGTGAGTAGGATTACAG+TGG | + | chr1.4:80852194-80852213 | None:intergenic | 45.0% | |
| TACTTGTCAACGTTACAGGG+TGG | - | chr1.4:80852227-80852246 | MS.gene99649:intron | 45.0% | |
| TATATGGTTCGTGCATGCCA+TGG | - | chr1.4:80849672-80849691 | MS.gene99649:intron | 45.0% | |
| TCAAGGTCTCAGGTTCCTAT+GGG | - | chr1.4:80851341-80851360 | MS.gene99649:intron | 45.0% | |
| TCATAGATCGACTAATCCGG+CGG | + | chr1.4:80851433-80851452 | None:intergenic | 45.0% | |
| TCATCTAGATTTACCACGCG+AGG | - | chr1.4:80852003-80852022 | MS.gene99649:intron | 45.0% | |
| TCATGTTTGCGCAAATGGTG+TGG | + | chr1.4:80849276-80849295 | None:intergenic | 45.0% | |
| TCCGCCATAATCCGATATCA+CGG | - | chr1.4:80849923-80849942 | MS.gene99649:intron | 45.0% | |
| TCTCTGATTGGCAGTAATCG+AGG | + | chr1.4:80853120-80853139 | None:intergenic | 45.0% | |
| TGTCTCATCATCCAAGCCTA+GGG | - | chr1.4:80852027-80852046 | MS.gene99649:intron | 45.0% | |
| TGTTATCGAATCGGCCATGA+CGG | - | chr1.4:80849835-80849854 | MS.gene99649:intron | 45.0% | |
| TTAGCACTGTTGTCTATGGC+GGG | + | chr1.4:80850001-80850020 | None:intergenic | 45.0% | |
| TTGTCTCATCATCCAAGCCT+AGG | - | chr1.4:80852026-80852045 | MS.gene99649:intron | 45.0% | |
| ! | AAAAGGCAGAGAAGTGTGTC+TGG | + | chr1.4:80852145-80852164 | None:intergenic | 45.0% |
| ! | AAAGGCAGAGAAGTGTGTCT+GGG | + | chr1.4:80852144-80852163 | None:intergenic | 45.0% |
| ! | AAATGGTGTGGAGCATCAAG+GGG | + | chr1.4:80849264-80849283 | None:intergenic | 45.0% |
| ! | ACGTTGTCAATGATGGAAGC+GGG | + | chr1.4:80848658-80848677 | None:intergenic | 45.0% |
| ! | AGGGAAGAAGGAGCATATTG+GGG | - | chr1.4:80852046-80852065 | MS.gene99649:intron | 45.0% |
| ! | ATTAGTCACCCCAGCTTTTG+GGG | - | chr1.4:80850355-80850374 | MS.gene99649:intron | 45.0% |
| ! | ATTGATTGCCTTTGGCGGAT+TGG | - | chr1.4:80853013-80853032 | MS.gene99649:CDS | 45.0% |
| ! | CAAATGGTGTGGAGCATCAA+GGG | + | chr1.4:80849265-80849284 | None:intergenic | 45.0% |
| ! | CTAGGGAAGAAGGAGCATAT+TGG | - | chr1.4:80852044-80852063 | MS.gene99649:intron | 45.0% |
| !! | TTAGCTTGCTTGTTTCCACC+CGG | - | chr1.4:80850424-80850443 | MS.gene99649:intron | 45.0% |
| !! | TTCCATATGGACTAGCCCAT+AGG | + | chr1.4:80851359-80851378 | None:intergenic | 45.0% |
| !! | TTCCTATGGGCTAGTCCATA+TGG | - | chr1.4:80851354-80851373 | MS.gene99649:intron | 45.0% |
| !! | TTGCTCGGCTTATTGGTTCT+TGG | + | chr1.4:80853766-80853785 | None:intergenic | 45.0% |
| !!! | TATTATTTAAAATTAATTCA+TGG | - | chr1.4:80849582-80849601 | MS.gene99649:intron | 5.0% |
| AACATCAACTAGCGTTGCCC+CGG | + | chr1.4:80850687-80850706 | None:intergenic | 50.0% | |
| AACATGAGTGGGGTCCGTAT+CGG | - | chr1.4:80849289-80849308 | MS.gene99649:intron | 50.0% | |
| AAGTGTGTCTGGGAAGTGAG+AGG | + | chr1.4:80852134-80852153 | None:intergenic | 50.0% | |
| AATCCCACCATCCACTAGCT+GGG | + | chr1.4:80851406-80851425 | None:intergenic | 50.0% | |
| ACCAATAAGCCGAGCAATGC+TGG | - | chr1.4:80853769-80853788 | MS.gene99649:CDS | 50.0% | |
| ATAGTCGGTACCTCTGAGCA+TGG | - | chr1.4:80852260-80852279 | MS.gene99649:intron | 50.0% | |
| ATTGTTCGACTCCCCTGATG+TGG | + | chr1.4:80853578-80853597 | None:intergenic | 50.0% | |
| CCAAGCATTACCCCAAAAGC+TGG | + | chr1.4:80850368-80850387 | None:intergenic | 50.0% | |
| CCAATAAGCCGAGCAATGCT+GGG | - | chr1.4:80853770-80853789 | MS.gene99649:CDS | 50.0% | |
| CCACACATTGCACTGTCACT+AGG | - | chr1.4:80849720-80849739 | MS.gene99649:intron | 50.0% | |
| CCCACTCATGTTTGCGCAAA+TGG | + | chr1.4:80849281-80849300 | None:intergenic | 50.0% | |
| CCTAGTGACAGTGCAATGTG+TGG | + | chr1.4:80849723-80849742 | None:intergenic | 50.0% | |
| CGAGTAGCGAGTTCAAGAGT+TGG | + | chr1.4:80848682-80848701 | None:intergenic | 50.0% | |
| CTCAAGGTCTCAGGTTCCTA+TGG | - | chr1.4:80851340-80851359 | MS.gene99649:intron | 50.0% | |
| CTCATGTGAACTCTTGGGCT+TGG | + | chr1.4:80852564-80852583 | None:intergenic | 50.0% | |
| GCCGTGATATCGGATTATGG+CGG | + | chr1.4:80849927-80849946 | None:intergenic | 50.0% | |
| GCGACAGTAACTCTTCTTCC+GGG | + | chr1.4:80851664-80851683 | None:intergenic | 50.0% | |
| GGAACAGCTATGCTGACAGT+GGG | + | chr1.4:80848637-80848656 | None:intergenic | 50.0% | |
| GGCGACAGTAACTCTTCTTC+CGG | + | chr1.4:80851665-80851684 | None:intergenic | 50.0% | |
| GTTATCGAATCGGCCATGAC+GGG | - | chr1.4:80849836-80849855 | MS.gene99649:intron | 50.0% | |
| TAGGAACCTGAGACCTTGAG+AGG | + | chr1.4:80851340-80851359 | None:intergenic | 50.0% | |
| TCATCCAAGCCTAGGGAAGA+AGG | - | chr1.4:80852034-80852053 | MS.gene99649:intron | 50.0% | |
| TGGGGAAGAAGAAGAAGCAG+CGG | - | chr1.4:80848494-80848513 | MS.gene99649:CDS | 50.0% | |
| ! | GAGGTGTCTCAAGATACTGC+AGG | + | chr1.4:80849076-80849095 | None:intergenic | 50.0% |
| ! | GCAAATGGTGTGGAGCATCA+AGG | + | chr1.4:80849266-80849285 | None:intergenic | 50.0% |
| ! | GGTGCCGTGATATCGGATTA+TGG | + | chr1.4:80849930-80849949 | None:intergenic | 50.0% |
| !! | CACATGTGGTGCCGTGATAT+CGG | + | chr1.4:80849937-80849956 | None:intergenic | 50.0% |
| !! | GTGTAGGTTTGGATTGGCAG+TGG | + | chr1.4:80853245-80853264 | None:intergenic | 50.0% |
| !! | TGGTCGGTATGGTGGGATTT+TGG | - | chr1.4:80849955-80849974 | MS.gene99649:intron | 50.0% |
| !!! | CCAGCTTTTGGGGTAATGCT+TGG | - | chr1.4:80850365-80850384 | MS.gene99649:intron | 50.0% |
| AAAACCTGGCCAGTGGCCAT+GGG | + | chr1.4:80850601-80850620 | None:intergenic | 55.0% | |
| ACATGAGTGGGGTCCGTATC+GGG | - | chr1.4:80849290-80849309 | MS.gene99649:intron | 55.0% | |
| ACCACATGTGGTCGGTATGG+TGG | - | chr1.4:80849947-80849966 | MS.gene99649:intron | 55.0% | |
| ATCACGGCACCACATGTGGT+CGG | - | chr1.4:80849939-80849958 | MS.gene99649:intron | 55.0% | |
| ATCCCACCATCCACTAGCTG+GGG | + | chr1.4:80851405-80851424 | None:intergenic | 55.0% | |
| CAAACCAGCCAATCCGCCAA+AGG | + | chr1.4:80853024-80853043 | None:intergenic | 55.0% | |
| CAATCCCACCATCCACTAGC+TGG | + | chr1.4:80851407-80851426 | None:intergenic | 55.0% | |
| CCAATTTCGGCCGATATGGC+GGG | - | chr1.4:80849896-80849915 | MS.gene99649:intron | 55.0% | |
| CCACATGTGGTCGGTATGGT+GGG | - | chr1.4:80849948-80849967 | MS.gene99649:intron | 55.0% | |
| CCCAATTTCGGCCGATATGG+CGG | - | chr1.4:80849895-80849914 | MS.gene99649:intron | 55.0% | |
| CCCAGCATTGCTCGGCTTAT+TGG | + | chr1.4:80853773-80853792 | None:intergenic | 55.0% | |
| CCGCCATATCGGCCGAAATT+GGG | + | chr1.4:80849898-80849917 | None:intergenic | 55.0% | |
| CGATATCACGGCACCACATG+TGG | - | chr1.4:80849935-80849954 | MS.gene99649:intron | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr1.4:80851324-80851343 | MS.gene99649:intron | 55.0% | |
| GAAGAAGCAGCGGCTGACAA+CGG | - | chr1.4:80848504-80848523 | MS.gene99649:CDS | 55.0% | |
| GATGATGAGACAACCTCGCG+TGG | + | chr1.4:80852019-80852038 | None:intergenic | 55.0% | |
| GGCGGAAAATCCCGCCATAT+CGG | + | chr1.4:80849909-80849928 | None:intergenic | 55.0% | |
| GGGAACAGCTATGCTGACAG+TGG | + | chr1.4:80848638-80848657 | None:intergenic | 55.0% | |
| TCGGCCGAAATTGGGTATGG+TGG | + | chr1.4:80849890-80849909 | None:intergenic | 55.0% | |
| TGCTCCTTCTTCCCTAGGCT+TGG | + | chr1.4:80852041-80852060 | None:intergenic | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | - | chr1.4:80851331-80851350 | MS.gene99649:intron | 55.0% | |
| TTAAATGGGCCCCCAGCTAG+TGG | - | chr1.4:80851392-80851411 | MS.gene99649:intron | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr1.4:80851326-80851345 | None:intergenic | 55.0% |
| ! | GAATCGGCCATGACGGGAAT+CGG | - | chr1.4:80849842-80849861 | MS.gene99649:intron | 55.0% |
| ! | GGGGCAACGCTAGTTGATGT+TGG | - | chr1.4:80850686-80850705 | MS.gene99649:intron | 55.0% |
| !! | ATTGCCTTTGGCGGATTGGC+TGG | - | chr1.4:80853017-80853036 | MS.gene99649:CDS | 55.0% |
| !! | CAGCTAGTGGATGGTGGGAT+TGG | - | chr1.4:80851405-80851424 | MS.gene99649:intron | 55.0% |
| !! | CTTTGGCGGATTGGCTGGTT+TGG | - | chr1.4:80853022-80853041 | MS.gene99649:intron | 55.0% |
| !! | TTGTTTTGCCCCATGGCCAC+TGG | - | chr1.4:80850589-80850608 | MS.gene99649:CDS | 55.0% |
| AAACCTGGCCAGTGGCCATG+GGG | + | chr1.4:80850600-80850619 | None:intergenic | 60.0% | |
| CAAAACCTGGCCAGTGGCCA+TGG | + | chr1.4:80850602-80850621 | None:intergenic | 60.0% | |
| CAAATTGCGGTTGGCGCCCA+TGG | + | chr1.4:80851686-80851705 | None:intergenic | 60.0% | |
| CATGGGCGCCAACCGCAATT+TGG | - | chr1.4:80851684-80851703 | MS.gene99649:intron | 60.0% | |
| CCCACCATACCGACCACATG+TGG | + | chr1.4:80849951-80849970 | None:intergenic | 60.0% | |
| CCCGCCATATCGGCCGAAAT+TGG | + | chr1.4:80849899-80849918 | None:intergenic | 60.0% | |
| GGCACCACATGTGGTCGGTA+TGG | - | chr1.4:80849944-80849963 | MS.gene99649:intron | 60.0% | |
| GGGCTTGGCAAGCCGTAGTT+TGG | + | chr1.4:80852549-80852568 | None:intergenic | 60.0% | |
| TCCCACCATCCACTAGCTGG+GGG | + | chr1.4:80851404-80851423 | None:intergenic | 60.0% | |
| ! | GCACTGTTGTCTATGGCGGG+TGG | + | chr1.4:80849998-80850017 | None:intergenic | 60.0% |
| ! | TGGTGTGGAGCATCAAGGGG+TGG | + | chr1.4:80849261-80849280 | None:intergenic | 60.0% |
| !! | ACTGCCACCGATTCCCGTCA+TGG | + | chr1.4:80849852-80849871 | None:intergenic | 60.0% |
| !! | CTGTTGTCTATGGCGGGTGG+TGG | + | chr1.4:80849995-80850014 | None:intergenic | 60.0% |
| !! | GATGGTGGGATTGGTACCGC+CGG | - | chr1.4:80851414-80851433 | MS.gene99649:intron | 60.0% |
| !!! | GGGATTTTGGCTCTCCGCCA+TGG | - | chr1.4:80849968-80849987 | MS.gene99649:CDS | 60.0% |
| ATGGGCCCCCAGCTAGTGGA+TGG | - | chr1.4:80851396-80851415 | MS.gene99649:intron | 65.0% | |
| GAGTGGGGTCCGTATCGGGA+AGG | - | chr1.4:80849294-80849313 | MS.gene99649:intron | 65.0% | |
| GGGGTCCGTATCGGGAAGGT+AGG | - | chr1.4:80849298-80849317 | MS.gene99649:intron | 65.0% | |
| ! | GCCCCCAGCTAGTGGATGGT+GGG | - | chr1.4:80851400-80851419 | MS.gene99649:intron | 65.0% |
| ! | TCGGCCATGACGGGAATCGG+TGG | - | chr1.4:80849845-80849864 | MS.gene99649:intron | 65.0% |
| !! | CTATGGCGGGTGGTGGTCCA+TGG | + | chr1.4:80849988-80850007 | None:intergenic | 65.0% |
| TTGCCCCATGGCCACTGGCC+AGG | - | chr1.4:80850594-80850613 | MS.gene99649:CDS | 70.0% | |
| ! | GGCCCCCAGCTAGTGGATGG+TGG | - | chr1.4:80851399-80851418 | MS.gene99649:intron | 70.0% |
| ! | TGGCGGGTGGTGGTCCATGG+CGG | + | chr1.4:80849985-80850004 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80848493 | 80853796 | 80848493 | ID=MS.gene99649 |
| chr1.4 | mRNA | 80848493 | 80853796 | 80848493 | ID=MS.gene99649.t1;Parent=MS.gene99649 |
| chr1.4 | exon | 80853587 | 80853796 | 80853587 | ID=MS.gene99649.t1.exon1;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80853587 | 80853796 | 80853587 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80853424 | 80853471 | 80853424 | ID=MS.gene99649.t1.exon2;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80853424 | 80853471 | 80853424 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80853144 | 80853311 | 80853144 | ID=MS.gene99649.t1.exon3;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80853144 | 80853311 | 80853144 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80852974 | 80853040 | 80852974 | ID=MS.gene99649.t1.exon4;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80852974 | 80853040 | 80852974 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80851571 | 80851635 | 80851571 | ID=MS.gene99649.t1.exon5;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80851571 | 80851635 | 80851571 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80850577 | 80850655 | 80850577 | ID=MS.gene99649.t1.exon6;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80850577 | 80850655 | 80850577 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80850163 | 80850278 | 80850163 | ID=MS.gene99649.t1.exon7;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80850163 | 80850278 | 80850163 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80849965 | 80850044 | 80849965 | ID=MS.gene99649.t1.exon8;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80849965 | 80850044 | 80849965 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80849213 | 80849282 | 80849213 | ID=MS.gene99649.t1.exon9;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80849213 | 80849282 | 80849213 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80848682 | 80848759 | 80848682 | ID=MS.gene99649.t1.exon10;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80848682 | 80848759 | 80848682 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| chr1.4 | exon | 80848493 | 80848555 | 80848493 | ID=MS.gene99649.t1.exon11;Parent=MS.gene99649.t1 |
| chr1.4 | CDS | 80848493 | 80848555 | 80848493 | ID=cds.MS.gene99649.t1;Parent=MS.gene99649.t1 |
| Gene Sequence |
| Protein sequence |
