AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000002.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000002.01.T01 MTR_1g026560 98.698 461 6 0 13 473 24 484 0.0 944
MsG0180000002.01.T01 MTR_6g045493 45.133 226 112 4 1 219 20 240 2.60e-40 151
MsG0180000002.01.T01 MTR_8g098495 47.030 202 95 5 13 208 42 237 6.38e-38 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000002.01.T01 AT1G76660 58.824 476 139 11 1 471 1 424 5.55e-172 490
MsG0180000002.01.T01 AT1G76660 54.521 365 114 9 111 471 1 317 1.53e-116 345
MsG0180000002.01.T01 AT5G52430 43.421 228 108 8 9 221 28 249 5.37e-35 135
MsG0180000002.01.T01 AT1G63720 35.206 267 154 6 12 274 35 286 2.96e-31 124
MsG0180000002.01.T01 AT4G25620 41.228 228 107 10 1 215 20 233 2.34e-22 99.8

Find 172 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGGTCTGGGAGGGTTTC+TGG -0.012729 1:+155687 MsG0180000002.01.T01:CDS
TTGATATTTCCTGCAGATTC+TGG 0.185494 1:-156686 None:intergenic
TACCTATGCACAATTCTATT+TGG 0.226625 1:+155767 MsG0180000002.01.T01:CDS
TCATCACTGTATCCTGAAAA+TGG 0.253710 1:+155651 MsG0180000002.01.T01:CDS
CCAGCCACTTGGGGCCCATT+TGG 0.259334 1:-155129 None:intergenic
TCACCAGAGTTCCTTGATAT+TGG 0.281584 1:-155579 None:intergenic
TATGAGGGAATGGAGGATTT+TGG 0.301503 1:-155791 None:intergenic
TTCTTTGCTTGCTTGCCAAC+TGG 0.303881 1:-156146 None:intergenic
CTGGGTCTGGGAGGGTTTCT+GGG 0.319925 1:+155688 MsG0180000002.01.T01:CDS
AGGCTACTGGCAGGACTTCC+AGG 0.328429 1:-155549 None:intergenic
TTGGGGCCCATTTGGTTGAC+TGG 0.328650 1:-155121 None:intergenic
CTGGCTGATCCATTATTATC+AGG 0.333530 1:-155102 None:intergenic
TCCTTGATATTGGAGATATA+AGG 0.338998 1:-155569 None:intergenic
ACTTGGAGTTGTCTAATAGA+TGG 0.341135 1:+156914 MsG0180000002.01.T01:three_prime_UTR
AAAAGATGGGGAGGTTGTTT+GGG 0.341988 1:+155018 MsG0180000002.01.T01:CDS
GACTTTATCTGTATCTATCT+TGG 0.351217 1:+152755 MsG0180000002.01.T01:five_prime_UTR
TCTCGTATTCCTGATAATAA+TGG 0.351751 1:+155093 MsG0180000002.01.T01:CDS
ATGCAGAGGTTGACTATAGA+AGG 0.361091 1:+156728 MsG0180000002.01.T01:CDS
CCAAATGGGCCCCAAGTGGC+TGG 0.362429 1:+155129 MsG0180000002.01.T01:CDS
TCCATGAGAGTATGATTATC+AGG 0.365296 1:-156631 None:intergenic
AAGTGAGCAAAAGGTACATC+TGG 0.369839 1:-155441 None:intergenic
CGACACTAATGATGTTACTA+TGG 0.373527 1:+155713 MsG0180000002.01.T01:CDS
ACCATGATGCCCTTGACCTC+TGG 0.374021 1:+156014 MsG0180000002.01.T01:CDS
GCTCAATCTACGGGTGGAAA+TGG 0.386458 1:+155849 MsG0180000002.01.T01:CDS
ATTTCTTCCACATCTTGCTT+AGG 0.387788 1:-155897 None:intergenic
AAATATCAGAGGACTGGGTC+TGG 0.392276 1:+155675 MsG0180000002.01.T01:CDS
TGGAAGAAATAGAAGCTTAC+CGG 0.393649 1:+155910 MsG0180000002.01.T01:CDS
GAAGCTTACCGGGCATCCTT+TGG 0.402159 1:+155921 MsG0180000002.01.T01:CDS
TTGAATTCTTTCATCAATGA+AGG 0.406547 1:-156065 None:intergenic
CTTAATCTGCCACCATTATG+AGG 0.431013 1:-155807 None:intergenic
AATCTGCAGGAAATATCAAA+TGG 0.433212 1:+156690 MsG0180000002.01.T01:CDS
TAGAATTGTGCATAGGTAGC+AGG 0.433727 1:-155762 None:intergenic
AAGACAAAAGCGATAAAGAT+TGG 0.436145 1:-152785 None:intergenic
AAGGAAAGAAACTCTTTACT+TGG 0.439431 1:+156897 MsG0180000002.01.T01:three_prime_UTR
CAGAAGCTTGCGAGAAAGAA+AGG 0.445491 1:+156753 MsG0180000002.01.T01:CDS
AGAGGATGAGTAAGGAAGGA+AGG 0.446236 1:-152886 None:intergenic
ATTGGTCAACCCAGCCACTT+GGG 0.446890 1:-155139 None:intergenic
TGTGGGCGAAACTCCCGCTC+AGG 0.448315 1:-155621 None:intergenic
AATCCTCCATTCCCTCATAA+TGG 0.450708 1:+155795 MsG0180000002.01.T01:CDS
AAAACAAGGGACTACATTCA+TGG 0.451350 1:-156996 None:intergenic
GATGTTAGAAAGTGAGCAAA+AGG 0.453692 1:-155450 None:intergenic
CGTGGAGATTTCTGATGTAA+TGG 0.456383 1:+155980 MsG0180000002.01.T01:CDS
AGCTGTGTTTCATGAGCATA+TGG 0.456787 1:-155321 None:intergenic
GTTGTTAAGTGAGCCAACTC+TGG 0.457024 1:-155408 None:intergenic
ATCTGCAGGAAATATCAAAT+GGG 0.459223 1:+156691 MsG0180000002.01.T01:CDS
AATATCAGAGGACTGGGTCT+GGG 0.462841 1:+155676 MsG0180000002.01.T01:CDS
GTCAACCTCTTTCCCTGAGC+GGG 0.463781 1:+155608 MsG0180000002.01.T01:CDS
GAATATGATTTGTCATGACT+TGG 0.464293 1:+156776 MsG0180000002.01.T01:exon
TCTTGCTTAGGACTTCTAGA+AGG 0.469074 1:-155885 None:intergenic
ATCGTATTTGAAGGACCGCC+AGG 0.474912 1:-155285 None:intergenic
TTTAAGTGGATGCAAACGTT+TGG 0.478600 1:+157051 MsG0180000002.01.T01:three_prime_UTR
CGATTAGACGCGAGTCCAGT+TGG 0.483659 1:+156131 MsG0180000002.01.T01:CDS
AATGGAAAATATCAGAGGAC+TGG 0.485419 1:+155669 MsG0180000002.01.T01:CDS
ATCGATTTCCACAAAATGAA+AGG 0.485536 1:+153120 MsG0180000002.01.T01:CDS
GGATCAGCCAGTCAACCAAA+TGG 0.486945 1:+155114 MsG0180000002.01.T01:CDS
CATTGATTTGCCAGAGGTCA+AGG 0.488083 1:-156024 None:intergenic
GAGAGGAGCAGTAGATGGTT+CGG 0.488881 1:-155376 None:intergenic
GTCGCATACATCGTATTTGA+AGG 0.489409 1:-155294 None:intergenic
GATTGGTCAACCCAGCCACT+TGG 0.491046 1:-155140 None:intergenic
TCATTATCTGCAAACTCACC+TGG 0.493733 1:+155267 MsG0180000002.01.T01:CDS
GGAGTGAGAGGAGCAGTAGA+TGG 0.494811 1:-155381 None:intergenic
GGACAGAGTCGGTTATATCT+AGG 0.496269 1:-156947 None:intergenic
AAAAGGTACATCTGGGGAAG+AGG 0.502005 1:-155433 None:intergenic
TAACAAAACAATCAAAGAAA+AGG 0.502767 1:-152824 None:intergenic
GTAGTGAAATTTGAGAAGAC+TGG 0.504573 1:-155354 None:intergenic
GGATATTGTAGCAACAGCTC+TGG 0.504750 1:+156598 MsG0180000002.01.T01:CDS
TCTTGTTTCAGTTCACAGAA+AGG 0.507174 1:+155048 MsG0180000002.01.T01:CDS
CACTGAAACCAAAGGATGCC+CGG 0.508288 1:-155929 None:intergenic
TGATGTTACTATGGCATCAC+AGG 0.509412 1:+155722 MsG0180000002.01.T01:CDS
GACCTCTGGCAAATCAATGA+TGG 0.511617 1:+156028 MsG0180000002.01.T01:CDS
AACTCAAGAGAGGATGAGTA+AGG 0.512213 1:-152894 None:intergenic
GCCTTATATCTCCAATATCA+AGG 0.518593 1:+155568 MsG0180000002.01.T01:CDS
TTGTTAAGTGAGCCAACTCT+GGG 0.521849 1:-155407 None:intergenic
ATGAGTAAGGAAGGAAGGAA+AGG 0.523258 1:-152881 None:intergenic
AATCAAATTCCTGTATGTGA+TGG 0.526258 1:+156167 MsG0180000002.01.T01:CDS
GCCTGATAATCATACTCTCA+TGG 0.526761 1:+156630 MsG0180000002.01.T01:CDS
AGCTATGCCTGTGACTTGAT+TGG 0.533069 1:-155157 None:intergenic
CCTTCATATCCATCACATAC+AGG 0.533645 1:-156176 None:intergenic
ATGGAAAATATCAGAGGACT+GGG 0.534187 1:+155670 MsG0180000002.01.T01:CDS
GATCAGCCAGTCAACCAAAT+GGG 0.535549 1:+155115 MsG0180000002.01.T01:CDS
TATTGGAGATATAAGGCTAC+TGG 0.535561 1:-155562 None:intergenic
AAACTCCCGCTCAGGGAAAG+AGG 0.535842 1:-155613 None:intergenic
AGAAATCTCCACGTATTGAC+TGG 0.536110 1:-155970 None:intergenic
GTTTCAGTTCACAGAAAGGT+GGG 0.537711 1:+155052 MsG0180000002.01.T01:CDS
CTGCCACCATTATGAGGGAA+TGG 0.538108 1:-155801 None:intergenic
GACTCGGATGCTCAATCTAC+GGG 0.540156 1:+155840 MsG0180000002.01.T01:CDS
AAACAATCAAAGAAAAGGAA+AGG 0.541080 1:-152819 None:intergenic
AACAGCAACAAGTCGCCCAT+GGG 0.542178 1:+153086 MsG0180000002.01.T01:exon
TCGATTTCCACAAAATGAAA+GGG 0.543028 1:+153121 MsG0180000002.01.T01:CDS
AGACTCGGATGCTCAATCTA+CGG 0.545021 1:+155839 MsG0180000002.01.T01:CDS
CAAACGTTTGGCTTTAGCAA+GGG 0.548018 1:+157063 MsG0180000002.01.T01:three_prime_UTR
CAAGAGAGGATGAGTAAGGA+AGG 0.551376 1:-152890 None:intergenic
GAAGGTGGAGCTAAGAGAGA+AGG 0.552066 1:-155180 None:intergenic
CTTGGTGACTGTGCAGTTGA+AGG 0.553984 1:-155234 None:intergenic
CGTAAGATCAGAACAAAAGC+AGG 0.554346 1:-157097 None:intergenic
GTAAAGGATGCTGGTGAAGA+AGG 0.554485 1:-155198 None:intergenic
GCGGGAGTTTCGCCCACAGT+GGG 0.556115 1:+155626 MsG0180000002.01.T01:CDS
TCTCCAATATCAAGGAACTC+TGG 0.557402 1:+155576 MsG0180000002.01.T01:CDS
GCCAGAGGTCAAGGGCATCA+TGG 0.557610 1:-156015 None:intergenic
CATGTCAGATCATAAATCAC+CGG 0.558274 1:+156576 MsG0180000002.01.T01:intron
AGTGAGCAAAAGGTACATCT+GGG 0.558305 1:-155440 None:intergenic
GCAAACGTTTGGCTTTAGCA+AGG 0.558524 1:+157062 MsG0180000002.01.T01:three_prime_UTR
TTATCAGGAATACGAGATGC+AGG 0.558545 1:-155087 None:intergenic
CAAATGGGCCCCAAGTGGCT+GGG 0.560270 1:+155130 MsG0180000002.01.T01:CDS
AATAAGATCCGGTCAAACAC+GGG 0.563633 1:-156970 None:intergenic
ATTCATGGATCAATAAGATC+CGG 0.564258 1:-156981 None:intergenic
AAAGGTACATCTGGGGAAGA+GGG 0.565920 1:-155432 None:intergenic
CTGGACTCGCGTCTAATCGA+AGG 0.566055 1:-156127 None:intergenic
TGCAGAGGTTGACTATAGAA+GGG 0.566479 1:+156729 MsG0180000002.01.T01:CDS
GACACTGCTTGAAGAAAACA+AGG 0.568492 1:-157010 None:intergenic
CAATAAGATCCGGTCAAACA+CGG 0.569320 1:-156971 None:intergenic
AATATGATTTGTCATGACTT+GGG 0.569512 1:+156777 MsG0180000002.01.T01:exon
TAACAGCAACAAGTCGCCCA+TGG 0.569515 1:+153085 MsG0180000002.01.T01:exon
CCTGTATGTGATGGATATGA+AGG 0.571427 1:+156176 MsG0180000002.01.T01:CDS
GTGAAATTTGAGAAGACTGG+AGG 0.572005 1:-155351 None:intergenic
TCAAATACGATGTATGCGAC+TGG 0.572329 1:+155297 MsG0180000002.01.T01:CDS
ACTACATATTCGCTCTACCC+TGG 0.573659 1:+155531 MsG0180000002.01.T01:CDS
TCAGAGGACTGGGTCTGGGA+GGG 0.576834 1:+155680 MsG0180000002.01.T01:CDS
TGTTTCAGTTCACAGAAAGG+TGG 0.578020 1:+155051 MsG0180000002.01.T01:CDS
ATTCAAAGCTCATGAGACTC+AGG 0.580037 1:+156082 MsG0180000002.01.T01:CDS
GCAGAATGTGTAAAGGATGC+TGG 0.584993 1:-155207 None:intergenic
GTGGGCGAAACTCCCGCTCA+GGG 0.587338 1:-155620 None:intergenic
GGGTTGACCAATCAAGTCAC+AGG 0.587853 1:+155150 MsG0180000002.01.T01:CDS
ATCAGAGGACTGGGTCTGGG+AGG 0.588077 1:+155679 MsG0180000002.01.T01:CDS
TAGAAGTCCTAAGCAAGATG+TGG 0.589021 1:+155890 MsG0180000002.01.T01:CDS
TTGGTCAACCCAGCCACTTG+GGG 0.591564 1:-155138 None:intergenic
ATATGCTCATGAAACACAGC+TGG 0.591977 1:+155323 MsG0180000002.01.T01:CDS
ATTAAGTGTTTCAAAAGACT+CGG 0.593462 1:+155824 MsG0180000002.01.T01:CDS
TGGGATCATCCAGAATCTGC+AGG 0.595345 1:+156677 MsG0180000002.01.T01:CDS
TCTATAGTCAACCTCTGCAT+CGG 0.596969 1:-156725 None:intergenic
CTCATCTGCACTGAAACCAA+AGG 0.597006 1:-155937 None:intergenic
TTCCATCATTGATTTGCCAG+AGG 0.599588 1:-156030 None:intergenic
GTGACTGTGCAGTTGAAGGA+AGG 0.600512 1:-155230 None:intergenic
AGGAAGGGCAGAATGTGTAA+AGG 0.600967 1:-155214 None:intergenic
CTGAAAATGGAAAATATCAG+AGG 0.602081 1:+155664 MsG0180000002.01.T01:CDS
AGAATTGTGCATAGGTAGCA+GGG 0.602738 1:-155761 None:intergenic
GAGCTGTTGCTACAATATCC+CGG 0.605194 1:-156595 None:intergenic
AACTCAACTCAACTCAACTC+AGG 0.606969 1:-153057 None:intergenic
GTTATCATGCTCCGATGCAG+AGG 0.606978 1:+156714 MsG0180000002.01.T01:CDS
GGAGATATAAGGCTACTGGC+AGG 0.608168 1:-155558 None:intergenic
CAAAGCTCATGAGACTCAGG+TGG 0.609565 1:+156085 MsG0180000002.01.T01:CDS
AGAAGCTTGCGAGAAAGAAA+GGG 0.612565 1:+156754 MsG0180000002.01.T01:CDS
GGAAGAAATAGAAGCTTACC+GGG 0.612807 1:+155911 MsG0180000002.01.T01:CDS
TTAATCTGCCACCATTATGA+GGG 0.614309 1:-155806 None:intergenic
ATTGATTTGCCAGAGGTCAA+GGG 0.615854 1:-156023 None:intergenic
GGCTACTGGCAGGACTTCCA+GGG 0.622814 1:-155548 None:intergenic
GTGGAAATGGACATCAGAGT+AGG 0.623948 1:+155862 MsG0180000002.01.T01:CDS
GTCCAAATAGAATTGTGCAT+AGG 0.628022 1:-155769 None:intergenic
AGCGGGAGTTTCGCCCACAG+TGG 0.628097 1:+155625 MsG0180000002.01.T01:CDS
CCACCATTATGAGGGAATGG+AGG 0.638910 1:-155798 None:intergenic
CCTCCATTCCCTCATAATGG+TGG 0.644991 1:+155798 MsG0180000002.01.T01:CDS
AAGGATGCTGGTGAAGAAGG+TGG 0.646683 1:-155195 None:intergenic
AAAGCTCATGAGACTCAGGT+GGG 0.647953 1:+156086 MsG0180000002.01.T01:CDS
ATGTCAGATCATAAATCACC+GGG 0.648766 1:+156577 MsG0180000002.01.T01:intron
GTTAAGTGAGCCAACTCTGG+GGG 0.650031 1:-155405 None:intergenic
ACAGTGATGAATCCCACTGT+GGG 0.651266 1:-155638 None:intergenic
TCGGATGCTCAATCTACGGG+TGG 0.656294 1:+155843 MsG0180000002.01.T01:CDS
TGTCAACCTCTTTCCCTGAG+CGG 0.657293 1:+155607 MsG0180000002.01.T01:CDS
GCAGAGGTTGACTATAGAAG+GGG 0.658601 1:+156730 MsG0180000002.01.T01:CDS
ATAAGATCCGGTCAAACACG+GGG 0.659713 1:-156969 None:intergenic
TATAACCACCAGTCAATACG+TGG 0.662605 1:+155962 MsG0180000002.01.T01:CDS
TCTGCAGGAAATATCAAATG+GGG 0.670683 1:+156692 MsG0180000002.01.T01:CDS
TCAACCAAATGGGCCCCAAG+TGG 0.677451 1:+155125 MsG0180000002.01.T01:CDS
AATCTCCACGTATTGACTGG+TGG 0.682416 1:-155967 None:intergenic
TGACTGTGCAGTTGAAGGAA+GGG 0.689565 1:-155229 None:intergenic
TACAGTGATGAATCCCACTG+TGG 0.717481 1:-155639 None:intergenic
TGTTAAGTGAGCCAACTCTG+GGG 0.718392 1:-155406 None:intergenic
ACAGCAACAAGTCGCCCATG+GGG 0.720791 1:+153087 MsG0180000002.01.T01:exon
GTGAGCAAAAGGTACATCTG+GGG 0.723428 1:-155439 None:intergenic
TTATCTGCAAACTCACCTGG+CGG 0.723487 1:+155270 MsG0180000002.01.T01:CDS
ACACTGCTTGAAGAAAACAA+GGG 0.754124 1:-157009 None:intergenic
TAAGATCCGGTCAAACACGG+GGG 0.764107 1:-156968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATTTAAGGATAAAAT+TGG - Chr1:156545-156564 None:intergenic 15.0%
!! TTAAAATTTGATGAGAAATT+GGG - Chr1:154104-154123 None:intergenic 15.0%
!!! ATGTTTTATGGAAATTAAAT+AGG + Chr1:153737-153756 MsG0180000002.01.T01:intron 15.0%
!!! TGAAATTTTAAGCTTTTTTA+GGG - Chr1:154882-154901 None:intergenic 15.0%
!!! TTTAAAATTTGATGAGAAAT+TGG - Chr1:154105-154124 None:intergenic 15.0%
!!! TTTTATTGTTATAACATGTT+AGG - Chr1:154191-154210 None:intergenic 15.0%
!! AATCGAAAATGTTAAATAGA+AGG - Chr1:153517-153536 None:intergenic 20.0%
!! AGAAAGATTGTATAAGTATT+AGG - Chr1:154598-154617 None:intergenic 20.0%
!! AGTAAGTGATTAACATAATA+TGG + Chr1:153405-153424 MsG0180000002.01.T01:intron 20.0%
!! GAAGATATATTCTCAAAAAT+GGG + Chr1:156658-156677 MsG0180000002.01.T01:CDS 20.0%
!! TAACAAAACAATCAAAGAAA+AGG - Chr1:152827-152846 None:intergenic 20.0%
!! TATTACAAAATTAAATGACC+TGG - Chr1:154499-154518 None:intergenic 20.0%
!! TGAAGATATATTCTCAAAAA+TGG + Chr1:156657-156676 MsG0180000002.01.T01:CDS 20.0%
!!! CTGAAATTTTAAGCTTTTTT+AGG - Chr1:154883-154902 None:intergenic 20.0%
!!! GCGGTTTTTTAAATATAAAA+AGG - Chr1:156855-156874 None:intergenic 20.0%
!!! TATGTTGTAGTTACTTTTAA+TGG + Chr1:156388-156407 MsG0180000002.01.T01:intron 20.0%
!!! TCTATTTAACATTTTCGATT+TGG + Chr1:153517-153536 MsG0180000002.01.T01:intron 20.0%
!!! TTAATGTTTTGACTTTTAAG+TGG + Chr1:157037-157056 MsG0180000002.01.T01:three_prime_UTR 20.0%
!!! TTTCTCATCAAATTTTAAAC+TGG + Chr1:154106-154125 MsG0180000002.01.T01:intron 20.0%
! AAAAAGAAGGAAAGAAAGAA+AGG + Chr1:156878-156897 MsG0180000002.01.T01:three_prime_UTR 25.0%
! AAACAATCAAAGAAAAGGAA+AGG - Chr1:152822-152841 None:intergenic 25.0%
! AAGAAAATCTTCAGTCAAAT+TGG + Chr1:154417-154436 MsG0180000002.01.T01:intron 25.0%
! AATGTTAAATAGAAGGAATC+TGG - Chr1:153510-153529 None:intergenic 25.0%
! AGGAGAGTAAATTAATAACT+GGG + Chr1:154379-154398 MsG0180000002.01.T01:intron 25.0%
! ATAAACAAGAAAAGCAAAAG+AGG - Chr1:153661-153680 None:intergenic 25.0%
! ATAATGCTAACATAAACAAG+AGG + Chr1:153571-153590 MsG0180000002.01.T01:intron 25.0%
! ATTAAGTGTTTCAAAAGACT+CGG + Chr1:155824-155843 MsG0180000002.01.T01:CDS 25.0%
! CAGACTTATTCAATTAGATT+TGG - Chr1:153940-153959 None:intergenic 25.0%
! GATAATGACAAAAAACAACT+TGG - Chr1:155255-155274 None:intergenic 25.0%
! GCAAGAAAGAAACATATTTA+AGG - Chr1:156555-156574 None:intergenic 25.0%
! TAGGAGAGTAAATTAATAAC+TGG + Chr1:154378-154397 MsG0180000002.01.T01:intron 25.0%
! TATAAGTATTAGGAAGTCAA+CGG - Chr1:154588-154607 None:intergenic 25.0%
! TATACTATATCCCAACATAA+TGG - Chr1:154153-154172 None:intergenic 25.0%
! TATTAACTGTTCCAAACATA+TGG - Chr1:154805-154824 None:intergenic 25.0%
! TATTACATCTTGAGAAATTG+TGG + Chr1:156234-156253 MsG0180000002.01.T01:intron 25.0%
! TTGAAGAGATTAATATGTGT+AGG - Chr1:154656-154675 None:intergenic 25.0%
! TTGAATTCTTTCATCAATGA+AGG - Chr1:156068-156087 None:intergenic 25.0%
! TTTCTCATGATACATTTGAA+AGG - Chr1:154058-154077 None:intergenic 25.0%
!! AATATGATTTGTCATGACTT+GGG + Chr1:156777-156796 MsG0180000002.01.T01:exon 25.0%
!! ATATGTTTGGAACAGTTAAT+AGG + Chr1:154804-154823 MsG0180000002.01.T01:intron 25.0%
!! ATGATACATTTGAAAGGTTT+TGG - Chr1:154052-154071 None:intergenic 25.0%
!! CTTTTTGTATACATACATAC+AGG - Chr1:153364-153383 None:intergenic 25.0%
!! TACAATCTTTCTCTTTTCTT+CGG + Chr1:154606-154625 MsG0180000002.01.T01:intron 25.0%
!! TTTGTAAATCTAAAACTCCA+AGG - Chr1:154337-154356 None:intergenic 25.0%
!!! AACAATGCTTTTTATCTACT+AGG - Chr1:154233-154252 None:intergenic 25.0%
!!! AATGAGATATTTTTGCTAAC+TGG - Chr1:153847-153866 None:intergenic 25.0%
!!! AATGCTTTTTATTCTCAACA+AGG - Chr1:153977-153996 None:intergenic 25.0%
!!! TACTCTTATTTTGAAAGAGA+GGG - Chr1:156448-156467 None:intergenic 25.0%
!!! TCTTTCTTTCCTTCTTTTTT+TGG - Chr1:156877-156896 None:intergenic 25.0%
AAAAAACCGCCAAAAAAAGA+AGG + Chr1:156865-156884 MsG0180000002.01.T01:three_prime_UTR 30.0%
AAAGTAACTACAACATACCA+AGG - Chr1:156385-156404 None:intergenic 30.0%
AAGACAAAAGCGATAAAGAT+TGG - Chr1:152788-152807 None:intergenic 30.0%
AAGCAACGAAAGGTTATTTA+TGG - Chr1:153317-153336 None:intergenic 30.0%
AAGGAAAGAAACTCTTTACT+TGG + Chr1:156897-156916 MsG0180000002.01.T01:three_prime_UTR 30.0%
AATCAAATTCCTGTATGTGA+TGG + Chr1:156167-156186 MsG0180000002.01.T01:CDS 30.0%
AATCTGCAGGAAATATCAAA+TGG + Chr1:156690-156709 MsG0180000002.01.T01:CDS 30.0%
AATCTGGAAAAGAGTAAGTT+GGG - Chr1:153494-153513 None:intergenic 30.0%
AGAGTAAATTAATAACTGGG+GGG + Chr1:154382-154401 MsG0180000002.01.T01:intron 30.0%
ATCTGCAGGAAATATCAAAT+GGG + Chr1:156691-156710 MsG0180000002.01.T01:CDS 30.0%
ATTCATGGATCAATAAGATC+CGG - Chr1:156984-157003 None:intergenic 30.0%
CATGTTAGGATATAGTGTAA+TGG - Chr1:154177-154196 None:intergenic 30.0%
CATTTCTCCCAGAAATATAT+TGG + Chr1:153863-153882 MsG0180000002.01.T01:intron 30.0%
CTGAAAATGGAAAATATCAG+AGG + Chr1:155664-155683 MsG0180000002.01.T01:CDS 30.0%
GAAAACTGTTCCATTATGTT+GGG + Chr1:154140-154159 MsG0180000002.01.T01:intron 30.0%
GACAGGATATTATATGGTAA+TGG - Chr1:154021-154040 None:intergenic 30.0%
GACTTTATCTGTATCTATCT+TGG + Chr1:152755-152774 MsG0180000002.01.T01:five_prime_UTR 30.0%
GAGAGTAAATTAATAACTGG+GGG + Chr1:154381-154400 MsG0180000002.01.T01:intron 30.0%
GGAAAAGACAGGATATTATA+TGG - Chr1:154027-154046 None:intergenic 30.0%
GGAGAGTAAATTAATAACTG+GGG + Chr1:154380-154399 MsG0180000002.01.T01:intron 30.0%
TACCTATGCACAATTCTATT+TGG + Chr1:155767-155786 MsG0180000002.01.T01:CDS 30.0%
TCCTTGATATTGGAGATATA+AGG - Chr1:155572-155591 None:intergenic 30.0%
TCGATTTCCACAAAATGAAA+GGG + Chr1:153121-153140 MsG0180000002.01.T01:CDS 30.0%
TCTCGTATTCCTGATAATAA+TGG + Chr1:155093-155112 MsG0180000002.01.T01:CDS 30.0%
TGGAAGTTTATTCTCAATTC+CGG - Chr1:154001-154020 None:intergenic 30.0%
TTAAATGAAAGACTTTGCCT+TGG + Chr1:154317-154336 MsG0180000002.01.T01:intron 30.0%
TTCCATAAAACATTCAATCC+AGG - Chr1:153730-153749 None:intergenic 30.0%
TTTGTCGCCAATATATTTCT+GGG - Chr1:153873-153892 None:intergenic 30.0%
! ACAATCTTTCTCTTTTCTTC+GGG + Chr1:154607-154626 MsG0180000002.01.T01:intron 30.0%
! ATAGTTACCCTTTCATTTTG+TGG - Chr1:153131-153150 None:intergenic 30.0%
! ATCGATTTCCACAAAATGAA+AGG + Chr1:153120-153139 MsG0180000002.01.T01:CDS 30.0%
! ATGAAGGTATGCTGTAAAAA+CGG + Chr1:156192-156211 MsG0180000002.01.T01:intron 30.0%
! CTCTGATATTTTCCATTTTC+AGG - Chr1:155666-155685 None:intergenic 30.0%
! GAAGTATTTAGCCATATGTT+TGG + Chr1:154791-154810 MsG0180000002.01.T01:intron 30.0%
! GAATATGATTTGTCATGACT+TGG + Chr1:156776-156795 MsG0180000002.01.T01:exon 30.0%
! TACCTGGATTGAATGTTTTA+TGG + Chr1:153725-153744 MsG0180000002.01.T01:intron 30.0%
! TTTTCGTAGAAAATTGCATG+TGG + Chr1:154679-154698 MsG0180000002.01.T01:intron 30.0%
! TTTTGTCGCCAATATATTTC+TGG - Chr1:153874-153893 None:intergenic 30.0%
!! TACATTTGAAAGGTTTTGGT+TGG - Chr1:154048-154067 None:intergenic 30.0%
!! TTGAGAATAAAAAGCATTGC+CGG + Chr1:153979-153998 MsG0180000002.01.T01:intron 30.0%
!! TTGTGGAAATCGATTTTGTT+CGG - Chr1:153114-153133 None:intergenic 30.0%
!!! CTACTCTTATTTTGAAAGAG+AGG - Chr1:156449-156468 None:intergenic 30.0%
!!! GTGTTTTAGGATCTAAGTTT+TGG - Chr1:154706-154725 None:intergenic 30.0%
!!! TTAACATTTTCGATTTGGCA+AGG + Chr1:153522-153541 MsG0180000002.01.T01:intron 30.0%
!!! TTCTTTCCTTCTTTTTTTGG+CGG - Chr1:156874-156893 None:intergenic 30.0%
AAAACAAGGGACTACATTCA+TGG - Chr1:156999-157018 None:intergenic 35.0%
AAATCTCAAAAATGGTGGCA+AGG + Chr1:155479-155498 MsG0180000002.01.T01:CDS 35.0%
AAATTGGTCCATGTAGGTTA+AGG + Chr1:154433-154452 MsG0180000002.01.T01:intron 35.0%
AATCTCAAAAATGGTGGCAA+GGG + Chr1:155480-155499 MsG0180000002.01.T01:CDS 35.0%
AATGGAAAATATCAGAGGAC+TGG + Chr1:155669-155688 MsG0180000002.01.T01:CDS 35.0%
AATTGGTCCATGTAGGTTAA+GGG + Chr1:154434-154453 MsG0180000002.01.T01:intron 35.0%
ACACTGCTTGAAGAAAACAA+GGG - Chr1:157012-157031 None:intergenic 35.0%
ACTTGGAGTTGTCTAATAGA+TGG + Chr1:156914-156933 MsG0180000002.01.T01:three_prime_UTR 35.0%
ATGGAAAATATCAGAGGACT+GGG + Chr1:155670-155689 MsG0180000002.01.T01:CDS 35.0%
ATGTCAGATCATAAATCACC+GGG + Chr1:156577-156596 MsG0180000002.01.T01:intron 35.0%
ATGTGAGATCTGAGCAAAAT+TGG - Chr1:153257-153276 None:intergenic 35.0%
ATTTCTTCCACATCTTGCTT+AGG - Chr1:155900-155919 None:intergenic 35.0%
CATCAAAAAGTGAGTCTATG+TGG + Chr1:152919-152938 MsG0180000002.01.T01:five_prime_UTR 35.0%
CATGTCAGATCATAAATCAC+CGG + Chr1:156576-156595 MsG0180000002.01.T01:intron 35.0%
CATTGACAGAGAAAAAGATG+GGG + Chr1:155006-155025 MsG0180000002.01.T01:intron 35.0%
CGACACTAATGATGTTACTA+TGG + Chr1:155713-155732 MsG0180000002.01.T01:CDS 35.0%
GAATCTGGAAAAGAGTAAGT+TGG - Chr1:153495-153514 None:intergenic 35.0%
GATGTTAGAAAGTGAGCAAA+AGG - Chr1:155453-155472 None:intergenic 35.0%
GCCTTATATCTCCAATATCA+AGG + Chr1:155568-155587 MsG0180000002.01.T01:CDS 35.0%
GGAAAACTGTTCCATTATGT+TGG + Chr1:154139-154158 MsG0180000002.01.T01:intron 35.0%
GTAGTGAAATTTGAGAAGAC+TGG - Chr1:155357-155376 None:intergenic 35.0%
GTCCAAATAGAATTGTGCAT+AGG - Chr1:155772-155791 None:intergenic 35.0%
TACAAATGTCAAGAAGCTGA+TGG + Chr1:154351-154370 MsG0180000002.01.T01:intron 35.0%
TAGGTAGAAAGATGTTTGAG+AGG + Chr1:154823-154842 MsG0180000002.01.T01:intron 35.0%
TATTGGAGATATAAGGCTAC+TGG - Chr1:155565-155584 None:intergenic 35.0%
TCAGCAAATCTCAAAAATGG+TGG + Chr1:155474-155493 MsG0180000002.01.T01:CDS 35.0%
TCAGTGTAATTCTTAGTACC+TGG + Chr1:153709-153728 MsG0180000002.01.T01:intron 35.0%
TCATCACTGTATCCTGAAAA+TGG + Chr1:155651-155670 MsG0180000002.01.T01:CDS 35.0%
TCCTCAGCAAATCTCAAAAA+TGG + Chr1:155471-155490 MsG0180000002.01.T01:CDS 35.0%
TCTGCAGGAAATATCAAATG+GGG + Chr1:156692-156711 MsG0180000002.01.T01:CDS 35.0%
TGGAAGAAATAGAAGCTTAC+CGG + Chr1:155910-155929 MsG0180000002.01.T01:CDS 35.0%
TGGTTATGTAGTAACTAGAG+AGG - Chr1:153234-153253 None:intergenic 35.0%
TGTCAATGCAAGTCAAGAAA+GGG - Chr1:154994-155013 None:intergenic 35.0%
TGTTGTAACGTGACTGAAAA+CGG - Chr1:153597-153616 None:intergenic 35.0%
TTAATCTGCCACCATTATGA+GGG - Chr1:155809-155828 None:intergenic 35.0%
TTCATCCAATGAAGATTCGA+CGG + Chr1:154549-154568 MsG0180000002.01.T01:intron 35.0%
TTGAAAATCACGAGACAGTA+TGG - Chr1:153442-153461 None:intergenic 35.0%
TTGATATTTCCTGCAGATTC+TGG - Chr1:156689-156708 None:intergenic 35.0%
TTTAAGTGGATGCAAACGTT+TGG + Chr1:157051-157070 MsG0180000002.01.T01:three_prime_UTR 35.0%
! AAAGCTACTCACTGTGTTTT+AGG - Chr1:154719-154738 None:intergenic 35.0%
! ACAGTGAGTAGCTTTTATCT+TGG + Chr1:154724-154743 MsG0180000002.01.T01:intron 35.0%
! GCATTGACAGAGAAAAAGAT+GGG + Chr1:155005-155024 MsG0180000002.01.T01:intron 35.0%
! TCCATGAGAGTATGATTATC+AGG - Chr1:156634-156653 None:intergenic 35.0%
! TCTTGTTTCAGTTCACAGAA+AGG + Chr1:155048-155067 MsG0180000002.01.T01:CDS 35.0%
! TGCATTGACAGAGAAAAAGA+TGG + Chr1:155004-155023 MsG0180000002.01.T01:intron 35.0%
! TTTGAAGTTGCTCTTCTCTA+TGG - Chr1:156309-156328 None:intergenic 35.0%
! TTTTAAACTGGTTGTTCCAC+AGG + Chr1:154118-154137 MsG0180000002.01.T01:intron 35.0%
! TTTTGATGTGAACTCAAGAG+AGG - Chr1:152907-152926 None:intergenic 35.0%
!! AATGGAGCACTGTATTAGTT+GGG + Chr1:153812-153831 MsG0180000002.01.T01:intron 35.0%
!! ATAATGGAACAGTTTTCCTG+TGG - Chr1:154137-154156 None:intergenic 35.0%
!!! ACCATTTTTGAGATTTGCTG+AGG - Chr1:155475-155494 None:intergenic 35.0%
AAAAAGATGGGGAGGTTGTT+TGG + Chr1:155017-155036 MsG0180000002.01.T01:CDS 40.0%
AAAAGATGGGGAGGTTGTTT+GGG + Chr1:155018-155037 MsG0180000002.01.T01:CDS 40.0%
AACTCAACCCTTAACCTACA+TGG - Chr1:154444-154463 None:intergenic 40.0%
AACTCAACTCAACTCAACTC+AGG - Chr1:153060-153079 None:intergenic 40.0%
AACTCAAGAGAGGATGAGTA+AGG - Chr1:152897-152916 None:intergenic 40.0%
AATAAGATCCGGTCAAACAC+GGG - Chr1:156973-156992 None:intergenic 40.0%
AATCACGAGACAGTATGGTA+TGG - Chr1:153437-153456 None:intergenic 40.0%
AATCCTCCATTCCCTCATAA+TGG + Chr1:155795-155814 MsG0180000002.01.T01:CDS 40.0%
AGAAATTTCTCCAACGTGAG+AGG + Chr1:154073-154092 MsG0180000002.01.T01:intron 40.0%
AGAAGCTTGCGAGAAAGAAA+GGG + Chr1:156754-156773 MsG0180000002.01.T01:CDS 40.0%
AGAATTGTGCATAGGTAGCA+GGG - Chr1:155764-155783 None:intergenic 40.0%
AGCTGTGTTTCATGAGCATA+TGG - Chr1:155324-155343 None:intergenic 40.0%
ATATGCTCATGAAACACAGC+TGG + Chr1:155323-155342 MsG0180000002.01.T01:CDS 40.0%
ATGAGTAAGGAAGGAAGGAA+AGG - Chr1:152884-152903 None:intergenic 40.0%
ATTCAAAGCTCATGAGACTC+AGG + Chr1:156082-156101 MsG0180000002.01.T01:CDS 40.0%
CAATAAGATCCGGTCAAACA+CGG - Chr1:156974-156993 None:intergenic 40.0%
CATAGTATCAGCGGAACAAT+AGG + Chr1:153771-153790 MsG0180000002.01.T01:intron 40.0%
CATCTCAATAACTAGAGCCT+TGG + Chr1:156365-156384 MsG0180000002.01.T01:intron 40.0%
CATGCTTTGCATAGTATCAG+CGG + Chr1:153762-153781 MsG0180000002.01.T01:intron 40.0%
CCAAAGTAGAAAGCAACGAA+AGG - Chr1:153327-153346 None:intergenic 40.0%
CCTTCATATCCATCACATAC+AGG - Chr1:156179-156198 None:intergenic 40.0%
CGTGGAGATTTCTGATGTAA+TGG + Chr1:155980-155999 MsG0180000002.01.T01:CDS 40.0%
CTGGCTGATCCATTATTATC+AGG - Chr1:155105-155124 None:intergenic 40.0%
CTGTCAATGCAAGTCAAGAA+AGG - Chr1:154995-155014 None:intergenic 40.0%
CTTAATCTGCCACCATTATG+AGG - Chr1:155810-155829 None:intergenic 40.0%
GAAATTTCTCCAACGTGAGA+GGG + Chr1:154074-154093 MsG0180000002.01.T01:intron 40.0%
GACACTGCTTGAAGAAAACA+AGG - Chr1:157013-157032 None:intergenic 40.0%
GCCTGATAATCATACTCTCA+TGG + Chr1:156630-156649 MsG0180000002.01.T01:CDS 40.0%
GGAAGAAATAGAAGCTTACC+GGG + Chr1:155911-155930 MsG0180000002.01.T01:CDS 40.0%
GTCGCATACATCGTATTTGA+AGG - Chr1:155297-155316 None:intergenic 40.0%
GTGAAATTTGAGAAGACTGG+AGG - Chr1:155354-155373 None:intergenic 40.0%
GTTTCAGTTCACAGAAAGGT+GGG + Chr1:155052-155071 MsG0180000002.01.T01:CDS 40.0%
TAGAAGTCCTAAGCAAGATG+TGG + Chr1:155890-155909 MsG0180000002.01.T01:CDS 40.0%
TAGAATTGTGCATAGGTAGC+AGG - Chr1:155765-155784 None:intergenic 40.0%
TATAACCACCAGTCAATACG+TGG + Chr1:155962-155981 MsG0180000002.01.T01:CDS 40.0%
TCAAATACGATGTATGCGAC+TGG + Chr1:155297-155316 MsG0180000002.01.T01:CDS 40.0%
TCACCAGAGTTCCTTGATAT+TGG - Chr1:155582-155601 None:intergenic 40.0%
TCAGTCAAATTGGTCCATGT+AGG + Chr1:154427-154446 MsG0180000002.01.T01:intron 40.0%
TCATCCAATGAAGATTCGAC+GGG + Chr1:154550-154569 MsG0180000002.01.T01:intron 40.0%
TCATTATCTGCAAACTCACC+TGG + Chr1:155267-155286 MsG0180000002.01.T01:CDS 40.0%
TCTATAGTCAACCTCTGCAT+CGG - Chr1:156728-156747 None:intergenic 40.0%
TCTCCAATATCAAGGAACTC+TGG + Chr1:155576-155595 MsG0180000002.01.T01:CDS 40.0%
TCTTGCTTAGGACTTCTAGA+AGG - Chr1:155888-155907 None:intergenic 40.0%
TGAGATCTGAGCAAAATTGG+TGG - Chr1:153254-153273 None:intergenic 40.0%
TGATGTTACTATGGCATCAC+AGG + Chr1:155722-155741 MsG0180000002.01.T01:CDS 40.0%
TGTTTCAGTTCACAGAAAGG+TGG + Chr1:155051-155070 MsG0180000002.01.T01:CDS 40.0%
TTATCAGGAATACGAGATGC+AGG - Chr1:155090-155109 None:intergenic 40.0%
TTGTTAAGTGAGCCAACTCT+GGG - Chr1:155410-155429 None:intergenic 40.0%
! AAGTGAGCAAAAGGTACATC+TGG - Chr1:155444-155463 None:intergenic 40.0%
! AGAAATCTCCACGTATTGAC+TGG - Chr1:155973-155992 None:intergenic 40.0%
! AGTGAGCAAAAGGTACATCT+GGG - Chr1:155443-155462 None:intergenic 40.0%
! CCTTTCGTTGCTTTCTACTT+TGG + Chr1:153324-153343 MsG0180000002.01.T01:intron 40.0%
! TATGAGGGAATGGAGGATTT+TGG - Chr1:155794-155813 None:intergenic 40.0%
!! AAGTGTTGATATGTACCCCA+AGG - Chr1:153905-153924 None:intergenic 40.0%
!! ATTGATTTGCCAGAGGTCAA+GGG - Chr1:156026-156045 None:intergenic 40.0%
!! CAAACGTTTGGCTTTAGCAA+GGG + Chr1:157063-157082 MsG0180000002.01.T01:three_prime_UTR 40.0%
!! CCTGTATGTGATGGATATGA+AGG + Chr1:156176-156195 MsG0180000002.01.T01:CDS 40.0%
!! CTTTTCTTCGGGTTTGTGAT+TGG + Chr1:154618-154637 MsG0180000002.01.T01:intron 40.0%
!! GAATGGAGCACTGTATTAGT+TGG + Chr1:153811-153830 MsG0180000002.01.T01:intron 40.0%
!! TCTCCTGCTTTTGTTCTGAT+CGG + Chr1:157094-157113 MsG0180000002.01.T01:three_prime_UTR 40.0%
!! TTCCATCATTGATTTGCCAG+AGG - Chr1:156033-156052 None:intergenic 40.0%
!! TTTCGATTTGGCAAGGTTGA+CGG + Chr1:153529-153548 MsG0180000002.01.T01:intron 40.0%
!!! AGGTTTTGGTTGGAAAAGAC+AGG - Chr1:154038-154057 None:intergenic 40.0%
AAAGCTCATGAGACTCAGGT+GGG + Chr1:156086-156105 MsG0180000002.01.T01:CDS 45.0%
AAATATCAGAGGACTGGGTC+TGG + Chr1:155675-155694 MsG0180000002.01.T01:CDS 45.0%
AATATCAGAGGACTGGGTCT+GGG + Chr1:155676-155695 MsG0180000002.01.T01:CDS 45.0%
ACAGTGATGAATCCCACTGT+GGG - Chr1:155641-155660 None:intergenic 45.0%
ACTACATATTCGCTCTACCC+TGG + Chr1:155531-155550 MsG0180000002.01.T01:CDS 45.0%
AGACTCGGATGCTCAATCTA+CGG + Chr1:155839-155858 MsG0180000002.01.T01:CDS 45.0%
AGAGGATGAGTAAGGAAGGA+AGG - Chr1:152889-152908 None:intergenic 45.0%
AGCTATGCCTGTGACTTGAT+TGG - Chr1:155160-155179 None:intergenic 45.0%
AGGAAGGGCAGAATGTGTAA+AGG - Chr1:155217-155236 None:intergenic 45.0%
ATAAGATCCGGTCAAACACG+GGG - Chr1:156972-156991 None:intergenic 45.0%
CAAGAGAGGATGAGTAAGGA+AGG - Chr1:152893-152912 None:intergenic 45.0%
CAGAAGCTTGCGAGAAAGAA+AGG + Chr1:156753-156772 MsG0180000002.01.T01:CDS 45.0%
CATCCAATGAAGATTCGACG+GGG + Chr1:154551-154570 MsG0180000002.01.T01:intron 45.0%
CGACAAAACAAACCAGCCTT+GGG + Chr1:153886-153905 MsG0180000002.01.T01:intron 45.0%
CTCATCTGCACTGAAACCAA+AGG - Chr1:155940-155959 None:intergenic 45.0%
CTTGGCATGACTAGTAGATG+CGG + Chr1:154742-154761 MsG0180000002.01.T01:intron 45.0%
GACAAAACAAACCAGCCTTG+GGG + Chr1:153887-153906 MsG0180000002.01.T01:intron 45.0%
GACCTCTGGCAAATCAATGA+TGG + Chr1:156028-156047 MsG0180000002.01.T01:CDS 45.0%
GAGCTGTTGCTACAATATCC+CGG - Chr1:156598-156617 None:intergenic 45.0%
GATCAGCCAGTCAACCAAAT+GGG + Chr1:155115-155134 MsG0180000002.01.T01:CDS 45.0%
GCAGAATGTGTAAAGGATGC+TGG - Chr1:155210-155229 None:intergenic 45.0%
GGACAGAGTCGGTTATATCT+AGG - Chr1:156950-156969 None:intergenic 45.0%
GGATATTGTAGCAACAGCTC+TGG + Chr1:156598-156617 MsG0180000002.01.T01:CDS 45.0%
GTAAAGGATGCTGGTGAAGA+AGG - Chr1:155201-155220 None:intergenic 45.0%
GTGGAAATGGACATCAGAGT+AGG + Chr1:155862-155881 MsG0180000002.01.T01:CDS 45.0%
GTTGTTAAGTGAGCCAACTC+TGG - Chr1:155411-155430 None:intergenic 45.0%
TACAGTGATGAATCCCACTG+TGG - Chr1:155642-155661 None:intergenic 45.0%
TGACAGAGAAAAAGATGGGG+AGG + Chr1:155009-155028 MsG0180000002.01.T01:intron 45.0%
TGACTGTGCAGTTGAAGGAA+GGG - Chr1:155232-155251 None:intergenic 45.0%
TGTTAAGTGAGCCAACTCTG+GGG - Chr1:155409-155428 None:intergenic 45.0%
TTATCTGCAAACTCACCTGG+CGG + Chr1:155270-155289 MsG0180000002.01.T01:CDS 45.0%
TTCTTTGCTTGCTTGCCAAC+TGG - Chr1:156149-156168 None:intergenic 45.0%
! AAAAGGTACATCTGGGGAAG+AGG - Chr1:155436-155455 None:intergenic 45.0%
! AAAGGTACATCTGGGGAAGA+GGG - Chr1:155435-155454 None:intergenic 45.0%
! AAGAGGCACAATAGATGAGC+AGG - Chr1:153644-153663 None:intergenic 45.0%
! GTGAGCAAAAGGTACATCTG+GGG - Chr1:155442-155461 None:intergenic 45.0%
! TCAAGAAGCTGATGGTGACT+AGG + Chr1:154359-154378 MsG0180000002.01.T01:intron 45.0%
!! AATCTCCACGTATTGACTGG+TGG - Chr1:155970-155989 None:intergenic 45.0%
!! CATTGATTTGCCAGAGGTCA+AGG - Chr1:156027-156046 None:intergenic 45.0%
!! CTCCTGCTTTTGTTCTGATC+GGG + Chr1:157095-157114 MsG0180000002.01.T01:three_prime_UTR 45.0%
!! GCAAACGTTTGGCTTTAGCA+AGG + Chr1:157062-157081 MsG0180000002.01.T01:three_prime_UTR 45.0%
!!! ATTTTATTAATTTTTTTGAA+TGG + Chr1:153794-153813 MsG0180000002.01.T01:intron 5.0%
!!! TTATTTTATAAAAGATAAAA+TGG - Chr1:156508-156527 None:intergenic 5.0%
AACAGCAACAAGTCGCCCAT+GGG + Chr1:153086-153105 MsG0180000002.01.T01:exon 50.0%
AAGGATGCTGGTGAAGAAGG+TGG - Chr1:155198-155217 None:intergenic 50.0%
ACACCCCGTCGAATCTTCAT+TGG - Chr1:154557-154576 None:intergenic 50.0%
ATCGTATTTGAAGGACCGCC+AGG - Chr1:155288-155307 None:intergenic 50.0%
ATTGGTCAACCCAGCCACTT+GGG - Chr1:155142-155161 None:intergenic 50.0%
CAAAGCTCATGAGACTCAGG+TGG + Chr1:156085-156104 MsG0180000002.01.T01:CDS 50.0%
CAAGCAGTCAAAGAGACACC+AGG + Chr1:154478-154497 MsG0180000002.01.T01:intron 50.0%
CACTGAAACCAAAGGATGCC+CGG - Chr1:155932-155951 None:intergenic 50.0%
CCACCATTATGAGGGAATGG+AGG - Chr1:155801-155820 None:intergenic 50.0%
CCTCCATTCCCTCATAATGG+TGG + Chr1:155798-155817 MsG0180000002.01.T01:CDS 50.0%
CTGCCACCATTATGAGGGAA+TGG - Chr1:155804-155823 None:intergenic 50.0%
GAAGGTGGAGCTAAGAGAGA+AGG - Chr1:155183-155202 None:intergenic 50.0%
GACTCGGATGCTCAATCTAC+GGG + Chr1:155840-155859 MsG0180000002.01.T01:CDS 50.0%
GAGAGGAGCAGTAGATGGTT+CGG - Chr1:155379-155398 None:intergenic 50.0%
GCGACAAAACAAACCAGCCT+TGG + Chr1:153885-153904 MsG0180000002.01.T01:intron 50.0%
GCTCAATCTACGGGTGGAAA+TGG + Chr1:155849-155868 MsG0180000002.01.T01:CDS 50.0%
GGAGATATAAGGCTACTGGC+AGG - Chr1:155561-155580 None:intergenic 50.0%
GGATCAGCCAGTCAACCAAA+TGG + Chr1:155114-155133 MsG0180000002.01.T01:CDS 50.0%
GGGTTGACCAATCAAGTCAC+AGG + Chr1:155150-155169 MsG0180000002.01.T01:CDS 50.0%
GTGACTGTGCAGTTGAAGGA+AGG - Chr1:155233-155252 None:intergenic 50.0%
GTTAAGTGAGCCAACTCTGG+GGG - Chr1:155408-155427 None:intergenic 50.0%
GTTATCATGCTCCGATGCAG+AGG + Chr1:156714-156733 MsG0180000002.01.T01:CDS 50.0%
GTTGATATGTACCCCAAGGC+TGG - Chr1:153901-153920 None:intergenic 50.0%
TAACAGCAACAAGTCGCCCA+TGG + Chr1:153085-153104 MsG0180000002.01.T01:exon 50.0%
TAAGATCCGGTCAAACACGG+GGG - Chr1:156971-156990 None:intergenic 50.0%
TGGGATCATCCAGAATCTGC+AGG + Chr1:156677-156696 MsG0180000002.01.T01:CDS 50.0%
TGTCAACCTCTTTCCCTGAG+CGG + Chr1:155607-155626 MsG0180000002.01.T01:CDS 50.0%
! CGATTTTGTTCGGACCCCAT+GGG - Chr1:153104-153123 None:intergenic 50.0%
! CTTGGTGACTGTGCAGTTGA+AGG - Chr1:155237-155256 None:intergenic 50.0%
! TCGATTTTGTTCGGACCCCA+TGG - Chr1:153105-153124 None:intergenic 50.0%
AAACTCCCGCTCAGGGAAAG+AGG - Chr1:155616-155635 None:intergenic 55.0%
ACAGCAACAAGTCGCCCATG+GGG + Chr1:153087-153106 MsG0180000002.01.T01:exon 55.0%
ACCATGATGCCCTTGACCTC+TGG + Chr1:156014-156033 MsG0180000002.01.T01:CDS 55.0%
CGATTAGACGCGAGTCCAGT+TGG + Chr1:156131-156150 MsG0180000002.01.T01:CDS 55.0%
CTGGACTCGCGTCTAATCGA+AGG - Chr1:156130-156149 None:intergenic 55.0%
GAAGCTTACCGGGCATCCTT+TGG + Chr1:155921-155940 MsG0180000002.01.T01:CDS 55.0%
GGAGTGAGAGGAGCAGTAGA+TGG - Chr1:155384-155403 None:intergenic 55.0%
GTCAACCTCTTTCCCTGAGC+GGG + Chr1:155608-155627 MsG0180000002.01.T01:CDS 55.0%
TCAAACACGGGGGACAGAGT+CGG - Chr1:156961-156980 None:intergenic 55.0%
TCAACCAAATGGGCCCCAAG+TGG + Chr1:155125-155144 MsG0180000002.01.T01:CDS 55.0%
TCGGATGCTCAATCTACGGG+TGG + Chr1:155843-155862 MsG0180000002.01.T01:CDS 55.0%
TTGGGGCCCATTTGGTTGAC+TGG - Chr1:155124-155143 None:intergenic 55.0%
TTGGTCAACCCAGCCACTTG+GGG - Chr1:155141-155160 None:intergenic 55.0%
! GATTGGTCAACCCAGCCACT+TGG - Chr1:155143-155162 None:intergenic 55.0%
ACTGGGTCTGGGAGGGTTTC+TGG + Chr1:155687-155706 MsG0180000002.01.T01:CDS 60.0%
AGGCTACTGGCAGGACTTCC+AGG - Chr1:155552-155571 None:intergenic 60.0%
ATCAGAGGACTGGGTCTGGG+AGG + Chr1:155679-155698 MsG0180000002.01.T01:CDS 60.0%
CAAATGGGCCCCAAGTGGCT+GGG + Chr1:155130-155149 MsG0180000002.01.T01:CDS 60.0%
CTCTGTCCCCCGTGTTTGAC+CGG + Chr1:156962-156981 MsG0180000002.01.T01:three_prime_UTR 60.0%
CTGGGTCTGGGAGGGTTTCT+GGG + Chr1:155688-155707 MsG0180000002.01.T01:CDS 60.0%
GGCTACTGGCAGGACTTCCA+GGG - Chr1:155551-155570 None:intergenic 60.0%
TCAGAGGACTGGGTCTGGGA+GGG + Chr1:155680-155699 MsG0180000002.01.T01:CDS 60.0%
TCTCACTCCTCCCCCAGAGT+TGG + Chr1:155395-155414 MsG0180000002.01.T01:CDS 60.0%
TTGGGTGCACCCTCTCACGT+TGG - Chr1:154086-154105 None:intergenic 60.0%
! AACTCTGGGGGAGGAGTGAG+AGG - Chr1:155396-155415 None:intergenic 60.0%
! AAGTGAGCCAACTCTGGGGG+AGG - Chr1:155405-155424 None:intergenic 60.0%
!! GCCAGAGGTCAAGGGCATCA+TGG - Chr1:156018-156037 None:intergenic 60.0%
AGCGGGAGTTTCGCCCACAG+TGG + Chr1:155625-155644 MsG0180000002.01.T01:CDS 65.0%
CCAAATGGGCCCCAAGTGGC+TGG + Chr1:155129-155148 MsG0180000002.01.T01:CDS 65.0%
CCAGCCACTTGGGGCCCATT+TGG - Chr1:155132-155151 None:intergenic 65.0%
GCGGGAGTTTCGCCCACAGT+GGG + Chr1:155626-155645 MsG0180000002.01.T01:CDS 65.0%
GTGGGCGAAACTCCCGCTCA+GGG - Chr1:155623-155642 None:intergenic 65.0%
TGTGGGCGAAACTCCCGCTC+AGG - Chr1:155624-155643 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 152749 157114 152749 ID=MsG0180000002.01;Name=MsG0180000002.01
Chr1 mRNA 152749 157114 152749 ID=MsG0180000002.01.T01;Parent=MsG0180000002.01;Name=MsG0180000002.01.T01;_AED=0.38;_eAED=0.38;_QI=355|1|1|1|0.5|0.33|3|331|473
Chr1 exon 156584 157114 156584 ID=MsG0180000002.01.T01:exon:8061;Parent=MsG0180000002.01.T01
Chr1 exon 155015 156197 155015 ID=MsG0180000002.01.T01:exon:8060;Parent=MsG0180000002.01.T01
Chr1 exon 152749 153142 152749 ID=MsG0180000002.01.T01:exon:8059;Parent=MsG0180000002.01.T01
Chr1 five_prime_UTR 152749 153103 152749 ID=MsG0180000002.01.T01:five_prime_utr;Parent=MsG0180000002.01.T01
Chr1 CDS 153104 153142 153104 ID=MsG0180000002.01.T01:cds;Parent=MsG0180000002.01.T01
Chr1 CDS 155015 156197 155015 ID=MsG0180000002.01.T01:cds;Parent=MsG0180000002.01.T01
Chr1 CDS 156584 156783 156584 ID=MsG0180000002.01.T01:cds;Parent=MsG0180000002.01.T01
Chr1 three_prime_UTR 156784 157114 156784 ID=MsG0180000002.01.T01:three_prime_utr;Parent=MsG0180000002.01.T01
Gene Sequence

>MsG0180000002.01.T01

ATGGGGTCCGAACAAAATCGATTTCCACAAAATGAAAGGAGAAAAAGATGGGGAGGTTGTTTGGGTGCATTTTCTTGTTTCAGTTCACAGAAAGGTGGGAAACGCATTGTACCTGCATCTCGTATTCCTGATAATAATGGATCAGCCAGTCAACCAAATGGGCCCCAAGTGGCTGGGTTGACCAATCAAGTCACAGGCATAGCTCCTTCTCTCTTAGCTCCACCTTCTTCACCAGCATCCTTTACACATTCTGCCCTTCCTTCAACTGCACAGTCACCAAGTTGTTTTTTGTCATTATCTGCAAACTCACCTGGCGGTCCTTCAAATACGATGTATGCGACTGGACCATATGCTCATGAAACACAGCTGGTGTCTCCTCCAGTCTTCTCAAATTTCACTACCGAACCATCTACTGCTCCTCTCACTCCTCCCCCAGAGTTGGCTCACTTAACAACTCCCTCTTCCCCAGATGTACCTTTTGCTCACTTTCTAACATCCTCAGCAAATCTCAAAAATGGTGGCAAGGGTAACTACATCACTGCAAATGATCTTCAAACTACATATTCGCTCTACCCTGGAAGTCCTGCCAGTAGCCTTATATCTCCAATATCAAGGAACTCTGGTGACTGTCTGTCAACCTCTTTCCCTGAGCGGGAGTTTCGCCCACAGTGGGATTCATCACTGTATCCTGAAAATGGAAAATATCAGAGGACTGGGTCTGGGAGGGTTTCTGGGCACGACACTAATGATGTTACTATGGCATCACAGGATACAAATTTCTTTTGCCCTGCTACCTATGCACAATTCTATTTGGACCAAAATCCTCCATTCCCTCATAATGGTGGCAGATTAAGTGTTTCAAAAGACTCGGATGCTCAATCTACGGGTGGAAATGGACATCAGAGTAGGCCTTCTAGAAGTCCTAAGCAAGATGTGGAAGAAATAGAAGCTTACCGGGCATCCTTTGGTTTCAGTGCAGATGAGATTATAACCACCAGTCAATACGTGGAGATTTCTGATGTAATGGACGACTCGTTTACCATGATGCCCTTGACCTCTGGCAAATCAATGATGGAAGAAAACATAGAGCCTTCATTGATGAAAGAATTCAAAGCTCATGAGACTCAGGTGGGTTTGCAGAATCTAAAATGCCTTCGATTAGACGCGAGTCCAGTTGGCAAGCAAGCAAAGAATCAAATTCCTGTATGTGATGGATATGAAGATCATAAATCACCGGGATATTGTAGCAACAGCTCTGGATTAAGTACGCCTGATAATCATACTCTCATGGATGATGAAGATATATTCTCAAAAATGGGATCATCCAGAATCTGCAGGAAATATCAAATGGGGTTATCATGCTCCGATGCAGAGGTTGACTATAGAAGGGGCAGAAGCTTGCGAGAAAGAAAGGGAATATGA
Protein sequence

>MsG0180000002.01.T01

MGSEQNRFPQNERRKRWGGCLGAFSCFSSQKGGKRIVPASRIPDNNGSASQPNGPQVAGLTNQVTGIAPSLLAPPSSPASFTHSALPSTAQSPSCFLSLSANSPGGPSNTMYATGPYAHETQLVSPPVFSNFTTEPSTAPLTPPPELAHLTTPSSPDVPFAHFLTSSANLKNGGKGNYITANDLQTTYSLYPGSPASSLISPISRNSGDCLSTSFPEREFRPQWDSSLYPENGKYQRTGSGRVSGHDTNDVTMASQDTNFFCPATYAQFYLDQNPPFPHNGGRLSVSKDSDAQSTGGNGHQSRPSRSPKQDVEEIEAYRASFGFSADEIITTSQYVEISDVMDDSFTMMPLTSGKSMMEENIEPSLMKEFKAHETQVGLQNLKCLRLDASPVGKQAKNQIPVCDGYEDHKSPGYCSNSSGLSTPDNHTLMDDEDIFSKMGSSRICRKYQMGLSCSDAEVDYRRGRSLRERKGI*