AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006402.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006402.01.T01 MTR_2g007650 96.758 401 12 1 1 401 1 400 0.0 796
MsG0280006402.01.T01 MTR_2g007650 95.423 284 12 1 1 284 1 283 1.00e-178 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006402.01.T01 AT1G33270 67.222 360 97 3 40 390 13 360 7.58e-175 492
MsG0280006402.01.T01 AT1G33270 66.899 287 74 3 40 317 13 287 7.62e-135 388

Find 142 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTAATATTTACAAAAT+AGG 0.150928 2:+1378207 MsG0280006402.01.T01:three_prime_UTR
AGACATTTGGAATAGTTATT+TGG 0.195790 2:+1378423 MsG0280006402.01.T01:three_prime_UTR
CAATTATGCTACCCTTTAAA+AGG 0.224023 2:+1378030 MsG0280006402.01.T01:three_prime_UTR
TTGCTGTAACACAGCTTCTT+TGG 0.250898 2:+1376576 MsG0280006402.01.T01:CDS
CTTCTCTTTCCTTATCATCT+TGG 0.258626 2:+1374183 MsG0280006402.01.T01:CDS
TATTTAATATTTACAAAATA+GGG 0.273161 2:+1378208 MsG0280006402.01.T01:three_prime_UTR
CTCTTCTCCGTTCACGCAAA+TGG 0.277244 2:+1373696 MsG0280006402.01.T01:exon
TATTCAAAATGGTTACATTA+AGG 0.286836 2:+1374221 MsG0280006402.01.T01:CDS
GTCTGTGCTGTAGTTGCTTC+TGG 0.289468 2:+1375318 MsG0280006402.01.T01:CDS
CTTGACCGACTCTTTGAGTT+TGG 0.293311 2:+1377863 MsG0280006402.01.T01:CDS
TTTACTTCTTCCTTTATTCC+AGG 0.293412 2:+1376659 MsG0280006402.01.T01:CDS
TTTGATAGCTACTAAAATAT+TGG 0.304460 2:+1375359 MsG0280006402.01.T01:CDS
TCCGCAGTTCCTAACTTCTA+AGG 0.305657 2:+1378082 MsG0280006402.01.T01:three_prime_UTR
GATATCTTGATGCTGCTGTC+TGG 0.307350 2:+1377885 MsG0280006402.01.T01:CDS
AAAACACTTGTCTAATCATT+TGG 0.311342 2:+1378462 MsG0280006402.01.T01:three_prime_UTR
CCTCCCTCCAATGATAATTA+AGG 0.315731 2:-1378059 None:intergenic
AGATTCAACCTGATGTGATT+TGG 0.334321 2:+1374079 MsG0280006402.01.T01:CDS
TTGGAGACCCAGGGGTTTGT+TGG 0.335292 2:+1376595 MsG0280006402.01.T01:CDS
CATTGTACAATAGCACATTA+TGG 0.336247 2:+1377973 MsG0280006402.01.T01:exon
AGAGAGAATTGGTGCTGTTA+TGG 0.341595 2:+1374050 MsG0280006402.01.T01:CDS
TCTTCTCCGTTCACGCAAAT+GGG 0.342480 2:+1373697 MsG0280006402.01.T01:exon
CGAAATCGTTTATGCATTGA+TGG 0.343466 2:+1376805 MsG0280006402.01.T01:CDS
GAACTTACAAAAGTAGATTA+TGG 0.347245 2:+1378487 MsG0280006402.01.T01:three_prime_UTR
AACAAATCACCCTGGAATAA+AGG 0.350115 2:-1376669 None:intergenic
CGAAACATCGTAGCTGGCTT+TGG 0.362210 2:-1376784 None:intergenic
GACATCACCTTAATTATCAT+TGG 0.363801 2:+1378052 MsG0280006402.01.T01:three_prime_UTR
GACGTTCATATAAGATCTAA+TGG 0.364869 2:+1376242 MsG0280006402.01.T01:CDS
TTTGTCATCCATAGGGAAAC+TGG 0.381622 2:-1378293 None:intergenic
CCATTAGCTGGTTCTTCTGC+TGG 0.395305 2:+1375288 MsG0280006402.01.T01:CDS
CCCTATGGATGACAAAGTTA+TGG 0.399539 2:+1378300 MsG0280006402.01.T01:three_prime_UTR
TGCATTGATGAGATCTTCCT+TGG 0.414782 2:-1376633 None:intergenic
TTGTAAACTAAGGAGACATT+TGG 0.421306 2:+1378410 MsG0280006402.01.T01:three_prime_UTR
GGGGACTGCATTTCGGCTGG+GGG 0.428347 2:+1375401 MsG0280006402.01.T01:CDS
GCCACCGGAGAACTCTTCTT+AGG 0.429093 2:+1373934 MsG0280006402.01.T01:CDS
GATTCAACCTGATGTGATTT+GGG 0.433059 2:+1374080 MsG0280006402.01.T01:CDS
TTGGGGAAAATTGTAAACTA+AGG 0.434184 2:+1378400 MsG0280006402.01.T01:three_prime_UTR
GAGACCCAGGGGTTTGTTGG+TGG 0.434625 2:+1376598 MsG0280006402.01.T01:CDS
TGAGATGAAGAAGGAGGAGA+TGG 0.442668 2:-1373740 None:intergenic
GATCTTATATGAACGTCATC+TGG 0.445330 2:-1376236 None:intergenic
AAGGAGGAGATGGATGGAGT+TGG 0.447255 2:-1373730 None:intergenic
TGCAATCCCATACGACCTGC+TGG 0.448491 2:-1377660 None:intergenic
AGAAAAGTTGTAACTACTCC+TGG 0.458445 2:+1374138 MsG0280006402.01.T01:CDS
CAGGAAACCACGCCATTAGC+TGG 0.458530 2:+1375276 MsG0280006402.01.T01:intron
CTCTGCTCCCAAATCACATC+AGG 0.461065 2:-1374087 None:intergenic
AGAGTGAGGTTAACGTCGTT+AGG 0.461158 2:-1373808 None:intergenic
ATTTATAGCCAGTTTCCCTA+TGG 0.461255 2:+1378285 MsG0280006402.01.T01:three_prime_UTR
TACAATGGGAAAGAGAGAAT+TGG 0.465947 2:+1374039 MsG0280006402.01.T01:CDS
GATACTACTGCTCCTGCATT+CGG 0.466890 2:+1377944 MsG0280006402.01.T01:CDS
TGAGCAACACCAAGATGATA+AGG 0.474367 2:-1374192 None:intergenic
TTACTTCTTCCTTTATTCCA+GGG 0.476147 2:+1376660 MsG0280006402.01.T01:CDS
AGGAGAGGGAGAAGGAGTTG+TGG 0.480729 2:-1373881 None:intergenic
TCCTTCTCCCTCTCCTCCGC+CGG 0.482267 2:+1373888 MsG0280006402.01.T01:CDS
CGTCGTTAGGGAAACGGAAA+CGG 0.485989 2:-1373795 None:intergenic
ATATCTTGATGCTGCTGTCT+GGG 0.486047 2:+1377886 MsG0280006402.01.T01:CDS
ATGAAGAAGGAGGAGATGGA+TGG 0.489641 2:-1373736 None:intergenic
GCGTTCTCGGGATTACAATC+TGG 0.491090 2:-1377699 None:intergenic
AAAATTCAGGGATACCTGAC+GGG 0.496920 2:-1377730 None:intergenic
AAATATTGGCTGAAGATTGT+CGG 0.498682 2:+1375373 MsG0280006402.01.T01:CDS
CCAGCAGAAGAACCAGCTAA+TGG 0.499103 2:-1375288 None:intergenic
ACCGACATCTGCAGCACAAA+CGG 0.500017 2:+1376849 MsG0280006402.01.T01:CDS
ATGCACCCCATTTGCGTGAA+CGG 0.505081 2:-1373703 None:intergenic
CGATTTCGAAACATCGTAGC+TGG 0.507412 2:-1376790 None:intergenic
GAAATCGTTTATGCATTGAT+GGG 0.509760 2:+1376806 MsG0280006402.01.T01:CDS
ATCACCTTAATTATCATTGG+AGG 0.510078 2:+1378055 MsG0280006402.01.T01:three_prime_UTR
TGGCTGAAGATTGTCGGAAG+GGG 0.511558 2:+1375379 MsG0280006402.01.T01:CDS
CACAGCTTCTTTGGAGACCC+AGG 0.512275 2:+1376585 MsG0280006402.01.T01:CDS
GTTCAACGGTAATGTACAAT+GGG 0.514808 2:+1374025 MsG0280006402.01.T01:CDS
AATTTGTTTCTGAATATCAC+AGG 0.517161 2:-1378349 None:intergenic
CGTATGGGATTGCAAGGGAT+AGG 0.518266 2:+1377669 MsG0280006402.01.T01:CDS
CTGATCCACCAACAAACCCC+TGG 0.519698 2:-1376603 None:intergenic
TATTGCGATAGAATTCTTGC+TGG 0.520803 2:+1378147 MsG0280006402.01.T01:three_prime_UTR
ACAATGCTATTTCCGAATGC+AGG 0.521454 2:-1377956 None:intergenic
TTGAGAAGGTGAGATGAAGA+AGG 0.521623 2:-1373749 None:intergenic
GAAGAGTTCTCCGGTGGCGA+CGG 0.521824 2:-1373929 None:intergenic
GAGTGAGGTTAACGTCGTTA+GGG 0.521955 2:-1373807 None:intergenic
ACGTTCATATAAGATCTAAT+GGG 0.522976 2:+1376243 MsG0280006402.01.T01:CDS
GGTGGATCAGTTTGATTCCA+AGG 0.522998 2:+1376616 MsG0280006402.01.T01:CDS
AGATCTAATGGGAGAGTTCG+AGG 0.526204 2:+1376254 MsG0280006402.01.T01:CDS
AGAAGGTGAGATGAAGAAGG+AGG 0.531067 2:-1373746 None:intergenic
GTATGGGATTGCAAGGGATA+GGG 0.532482 2:+1377670 MsG0280006402.01.T01:CDS
AGTTGCTTCTGGAGCTAGCA+TGG 0.537640 2:+1375329 MsG0280006402.01.T01:CDS
AAATCCTTCGCCGTCGCCAC+CGG 0.541596 2:+1373919 MsG0280006402.01.T01:CDS
TTGTACATTACCGTTGAACT+CGG 0.542685 2:-1374021 None:intergenic
TCGCCACCGGAGTCGATTCG+CGG 0.550243 2:-1373981 None:intergenic
CCATAACTTTGTCATCCATA+GGG 0.555512 2:-1378300 None:intergenic
TTCTCCGGTGGCGACGGCGA+AGG 0.555947 2:-1373923 None:intergenic
TCCGGCGGAGGAGAGGGAGA+AGG 0.558004 2:-1373889 None:intergenic
GGTTAACGTCGTTAGGGAAA+CGG 0.558708 2:-1373801 None:intergenic
CCGCAGTTCCTAACTTCTAA+GGG 0.559472 2:+1378083 MsG0280006402.01.T01:three_prime_UTR
GGCTGAAGATTGTCGGAAGG+GGG 0.561976 2:+1375380 MsG0280006402.01.T01:CDS
TTAATATTTACAAAATAGGG+TGG 0.562220 2:+1378211 MsG0280006402.01.T01:three_prime_UTR
TCAAGAATTACATCTTCTGC+TGG 0.562958 2:-1377845 None:intergenic
GCAGGTCGTATGGGATTGCA+AGG 0.563172 2:+1377663 MsG0280006402.01.T01:CDS
CAACAGCCGCGAATCGACTC+CGG 0.569194 2:+1373975 MsG0280006402.01.T01:CDS
CTGAAGATTGTCGGAAGGGG+GGG 0.569435 2:+1375382 MsG0280006402.01.T01:CDS
TATACCTAAGAAGAGTTCTC+CGG 0.569651 2:-1373938 None:intergenic
TGATGCTGCTGTCTGGGCAA+AGG 0.572016 2:+1377892 MsG0280006402.01.T01:CDS
ATTGCGATAGAATTCTTGCT+GGG 0.572047 2:+1378148 MsG0280006402.01.T01:three_prime_UTR
GTTCACGCAAATGGGGTGCA+TGG 0.574426 2:+1373705 MsG0280006402.01.T01:exon
TGCGATAGAATTCTTGCTGG+GGG 0.577417 2:+1378150 MsG0280006402.01.T01:three_prime_UTR
GCTGAAGATTGTCGGAAGGG+GGG 0.578978 2:+1375381 MsG0280006402.01.T01:CDS
ACAGCTTCTTTGGAGACCCA+GGG 0.582345 2:+1376586 MsG0280006402.01.T01:CDS
AAATCGTTTATGCATTGATG+GGG 0.582936 2:+1376807 MsG0280006402.01.T01:CDS
CTTCTCCGTTCACGCAAATG+GGG 0.585899 2:+1373698 MsG0280006402.01.T01:exon
GCCATAACTTTGTCATCCAT+AGG 0.587101 2:-1378301 None:intergenic
AACGGAAAGTGTGACGGTAA+CGG 0.587248 2:-1373777 None:intergenic
AATTGAATTGAGTGCGCGTG+GGG 0.592504 2:-1373834 None:intergenic
GAATTCTCGAACATCGCCAC+CGG 0.592760 2:-1373994 None:intergenic
TCACCTTAATTATCATTGGA+GGG 0.593314 2:+1378056 MsG0280006402.01.T01:three_prime_UTR
GAGAGTGAAAGATATTGAAG+CGG 0.595167 2:+1374107 MsG0280006402.01.T01:CDS
AGTTCAACGGTAATGTACAA+TGG 0.599667 2:+1374024 MsG0280006402.01.T01:CDS
CATTTGCGTGAACGGAGAAG+AGG 0.602328 2:-1373695 None:intergenic
ACCGTTTGTGCTGCAGATGT+CGG 0.603463 2:-1376850 None:intergenic
GATATCCAAACTCAAAGAGT+CGG 0.608281 2:-1377868 None:intergenic
TTGGCTGAAGATTGTCGGAA+GGG 0.608456 2:+1375378 MsG0280006402.01.T01:CDS
TGATCCACCAACAAACCCCT+GGG 0.611703 2:-1376602 None:intergenic
AACGGAAACGGAAAGTGTGA+CGG 0.617926 2:-1373783 None:intergenic
CGGTAACGGTGAGCTTGAGA+AGG 0.618269 2:-1373763 None:intergenic
ATTGGCTGAAGATTGTCGGA+AGG 0.624133 2:+1375377 MsG0280006402.01.T01:CDS
AGAATTGAATTGAGTGCGCG+TGG 0.635696 2:-1373836 None:intergenic
CCCTTAGAAGTTAGGAACTG+CGG 0.642484 2:-1378083 None:intergenic
CAGCCGCGAATCGACTCCGG+TGG 0.645005 2:+1373978 MsG0280006402.01.T01:CDS
GTGGAGTGTTGTTGAACGCG+TGG 0.645342 2:-1373862 None:intergenic
TGAAAGATATTGAAGCGGAA+CGG 0.645350 2:+1374112 MsG0280006402.01.T01:CDS
TTATGGATTGAAGATGCATG+AGG 0.646725 2:+1377990 MsG0280006402.01.T01:three_prime_UTR
AATCGTTTATGCATTGATGG+GGG 0.653176 2:+1376808 MsG0280006402.01.T01:CDS
TATGGATTGAAGATGCATGA+GGG 0.653328 2:+1377991 MsG0280006402.01.T01:three_prime_UTR
TTGCGATAGAATTCTTGCTG+GGG 0.660284 2:+1378149 MsG0280006402.01.T01:three_prime_UTR
GAGTGTTGTTGAACGCGTGG+TGG 0.667602 2:-1373859 None:intergenic
CAGCTTCTTTGGAGACCCAG+GGG 0.669446 2:+1376587 MsG0280006402.01.T01:CDS
ACCTAAGAAGAGTTCTCCGG+TGG 0.670487 2:-1373935 None:intergenic
CCTTAATTATCATTGGAGGG+AGG 0.672110 2:+1378059 MsG0280006402.01.T01:three_prime_UTR
GAATTCGAATCCGAGTTCAA+CGG 0.674301 2:+1374011 MsG0280006402.01.T01:CDS
GTTTGTGCTGCAGATGTCGG+TGG 0.676596 2:-1376847 None:intergenic
AAATTCAGGGATACCTGACG+GGG 0.677043 2:-1377729 None:intergenic
TGCGCGTGGGGAGAAGAGTG+AGG 0.677813 2:-1373822 None:intergenic
GCGATAGAATTCTTGCTGGG+GGG 0.689470 2:+1378151 MsG0280006402.01.T01:three_prime_UTR
GCAGCAGAGAAACTAAAACC+AGG 0.702246 2:-1374156 None:intergenic
GAATTGAATTGAGTGCGCGT+GGG 0.703219 2:-1373835 None:intergenic
AGAAGAACCAGCTAATGGCG+TGG 0.703301 2:-1375283 None:intergenic
CAGGTCGTATGGGATTGCAA+GGG 0.713449 2:+1377664 MsG0280006402.01.T01:CDS
AATTCAGGGATACCTGACGG+GGG 0.769255 2:-1377728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTTATGAATTAAAAAA+AGG - Chr2:1374255-1374274 None:intergenic 10.0%
!! AATTAAACAAAAAGAAAATA+AGG + Chr2:1376463-1376482 MsG0280006402.01.T01:intron 10.0%
!!! TTTTTAATTCATAACTATTA+AGG + Chr2:1374256-1374275 MsG0280006402.01.T01:intron 10.0%
!! AAGTATTAAAGATAAATTGA+TGG + Chr2:1377382-1377401 MsG0280006402.01.T01:intron 15.0%
!! AATAAGTTATTTATTCAAAC+AGG + Chr2:1374595-1374614 MsG0280006402.01.T01:intron 15.0%
!! AATTACACTTATAAATTACA+TGG + Chr2:1376428-1376447 MsG0280006402.01.T01:intron 15.0%
!! AGATTATCTAAATATTGTAT+GGG - Chr2:1377201-1377220 None:intergenic 15.0%
!! AGTCCAAAAAAAAAATTATA+AGG - Chr2:1376950-1376969 None:intergenic 15.0%
!! ATAAGTTATTTATTCAAACA+GGG + Chr2:1374596-1374615 MsG0280006402.01.T01:intron 15.0%
!! GAGATATATATAATTTCATT+TGG + Chr2:1376155-1376174 MsG0280006402.01.T01:intron 15.0%
!! TAGATTATCTAAATATTGTA+TGG - Chr2:1377202-1377221 None:intergenic 15.0%
!!! ATGCCTTATAATTTTTTTTT+TGG + Chr2:1376944-1376963 MsG0280006402.01.T01:intron 15.0%
!!! ATTTTTATTTAGTTACTTGT+TGG + Chr2:1376873-1376892 MsG0280006402.01.T01:intron 15.0%
!!! CAATGTTTTAAATACTATAA+AGG - Chr2:1377330-1377349 None:intergenic 15.0%
!!! TTAAAAGATATAACTGTTTT+GGG + Chr2:1375915-1375934 MsG0280006402.01.T01:intron 15.0%
!!! TTTAAAAGATATAACTGTTT+TGG + Chr2:1375914-1375933 MsG0280006402.01.T01:intron 15.0%
!! AAAATAATTCTAACTTTCTC+AGG + Chr2:1377410-1377429 MsG0280006402.01.T01:intron 20.0%
!! AACTTACAAAAGTAGATTAT+GGG + Chr2:1378488-1378507 MsG0280006402.01.T01:three_prime_UTR 20.0%
!! AATGCATAGAACTAAATTAA+TGG - Chr2:1376996-1377015 None:intergenic 20.0%
!! AGTTATGAATTAAAAAAAGG+AGG - Chr2:1374252-1374271 None:intergenic 20.0%
!! AGTTATTAAGTATCAGTTAT+TGG + Chr2:1375858-1375877 MsG0280006402.01.T01:intron 20.0%
!! ATAGAATCCAAAAAAAAAAG+TGG - Chr2:1375807-1375826 None:intergenic 20.0%
!! ATGAAGAGTAATAAACTTTA+GGG + Chr2:1377232-1377251 MsG0280006402.01.T01:intron 20.0%
!! CAATAACAAAAACATTCAAT+TGG - Chr2:1374924-1374943 None:intergenic 20.0%
!! CACAAAATAATCAATCAATT+GGG - Chr2:1376910-1376929 None:intergenic 20.0%
!! GAAATTATATATATCTCGTA+AGG - Chr2:1376152-1376171 None:intergenic 20.0%
!! TAAGTTATTTATTCAAACAG+GGG + Chr2:1374597-1374616 MsG0280006402.01.T01:intron 20.0%
!! TACTTAATAACTTTCAAGAT+AGG - Chr2:1375850-1375869 None:intergenic 20.0%
!! TATCATTGTATGTTTATCTA+GGG + Chr2:1374974-1374993 MsG0280006402.01.T01:intron 20.0%
!! TATCTTTGTATGTTTATCTA+GGG + Chr2:1374895-1374914 MsG0280006402.01.T01:intron 20.0%
!! TATTACTCTTCATCAATAAT+TGG - Chr2:1377225-1377244 None:intergenic 20.0%
!! TATTCAAAATGGTTACATTA+AGG + Chr2:1374221-1374240 MsG0280006402.01.T01:CDS 20.0%
!! TCACAAAATAATCAATCAAT+TGG - Chr2:1376911-1376930 None:intergenic 20.0%
!! TTAATATTTACAAAATAGGG+TGG + Chr2:1378211-1378230 MsG0280006402.01.T01:three_prime_UTR 20.0%
!!! AAAAAATAGCTAAGCTTTTT+TGG - Chr2:1375628-1375647 None:intergenic 20.0%
!!! AAAAATAGCTAAGCTTTTTT+GGG - Chr2:1375627-1375646 None:intergenic 20.0%
!!! ACTTGAAGTTTAACTTTTAT+TGG + Chr2:1375567-1375586 MsG0280006402.01.T01:intron 20.0%
!!! AGTTATGTAATCTACTATTT+TGG + Chr2:1375182-1375201 MsG0280006402.01.T01:intron 20.0%
!!! AGTTATTTTCATTATAGAAC+TGG + Chr2:1376300-1376319 MsG0280006402.01.T01:intron 20.0%
!!! ATATCTTTTAAAAATGCTAG+AGG - Chr2:1375906-1375925 None:intergenic 20.0%
!!! CTTGAAGTTTAACTTTTATT+GGG + Chr2:1375568-1375587 MsG0280006402.01.T01:intron 20.0%
!!! CTTTTTTTTTTGGATTCTAT+TGG + Chr2:1375807-1375826 MsG0280006402.01.T01:intron 20.0%
!!! TAAAAGATATAACTGTTTTG+GGG + Chr2:1375916-1375935 MsG0280006402.01.T01:intron 20.0%
!!! TTGAAGTTTAACTTTTATTG+GGG + Chr2:1375569-1375588 MsG0280006402.01.T01:intron 20.0%
!!! TTTGATAGCTACTAAAATAT+TGG + Chr2:1375359-1375378 MsG0280006402.01.T01:CDS 20.0%
!!! TTTTGTTATTGAAATAGAAC+TGG + Chr2:1374933-1374952 MsG0280006402.01.T01:intron 20.0%
! AAAACACTTGTCTAATCATT+TGG + Chr2:1378462-1378481 MsG0280006402.01.T01:three_prime_UTR 25.0%
! AAAGCGATAAATGTTTATCA+AGG - Chr2:1377618-1377637 None:intergenic 25.0%
! AATATTCTAATCTCATAGTG+CGG + Chr2:1376122-1376141 MsG0280006402.01.T01:intron 25.0%
! AATTCTTTCATTGGAATACT+TGG + Chr2:1377031-1377050 MsG0280006402.01.T01:intron 25.0%
! ACGTTCATATAAGATCTAAT+GGG + Chr2:1376243-1376262 MsG0280006402.01.T01:CDS 25.0%
! ACTTACAAAAGTAGATTATG+GGG + Chr2:1378489-1378508 MsG0280006402.01.T01:three_prime_UTR 25.0%
! AGCTTATGAAAATAGCTTAT+AGG + Chr2:1374725-1374744 MsG0280006402.01.T01:intron 25.0%
! AGTATACCAACAAGAAAATA+CGG - Chr2:1375148-1375167 None:intergenic 25.0%
! ATGCTAACTCATAAAATTCA+GGG - Chr2:1377745-1377764 None:intergenic 25.0%
! CTTGATGAGAAAAAACATAT+TGG + Chr2:1376390-1376409 MsG0280006402.01.T01:intron 25.0%
! GAACTTACAAAAGTAGATTA+TGG + Chr2:1378487-1378506 MsG0280006402.01.T01:three_prime_UTR 25.0%
! GATGAAGAGTAATAAACTTT+AGG + Chr2:1377231-1377250 MsG0280006402.01.T01:intron 25.0%
! GTATCATTGTATGTTTATCT+AGG + Chr2:1374973-1374992 MsG0280006402.01.T01:intron 25.0%
! GTATCTTTGTATGTTTATCT+AGG + Chr2:1374894-1374913 MsG0280006402.01.T01:intron 25.0%
! TATGCATTTATCATTTGAGA+TGG + Chr2:1377008-1377027 MsG0280006402.01.T01:intron 25.0%
! TATGCTAACTCATAAAATTC+AGG - Chr2:1377746-1377765 None:intergenic 25.0%
! TCACTTTCATAAATTACTAC+TGG - Chr2:1374426-1374445 None:intergenic 25.0%
! TTGTTAGTATAGTATTACCT+CGG + Chr2:1376687-1376706 MsG0280006402.01.T01:intron 25.0%
!! AATAAGATCCTTGTGAATTT+TGG + Chr2:1375689-1375708 MsG0280006402.01.T01:intron 25.0%
!! AATCATTTCAGCTTTTGAAT+TGG + Chr2:1377813-1377832 MsG0280006402.01.T01:intron 25.0%
!! AGACATTTGGAATAGTTATT+TGG + Chr2:1378423-1378442 MsG0280006402.01.T01:three_prime_UTR 25.0%
!! ATAACTATTAAGGACTTGTT+TGG + Chr2:1374266-1374285 MsG0280006402.01.T01:intron 25.0%
!! ATAAGATCCTTGTGAATTTT+GGG + Chr2:1375690-1375709 MsG0280006402.01.T01:intron 25.0%
!! ATCATTTCAGCTTTTGAATT+GGG + Chr2:1377814-1377833 MsG0280006402.01.T01:intron 25.0%
!! ATTGAGGTTTTTATCAAAAC+AGG + Chr2:1374843-1374862 MsG0280006402.01.T01:intron 25.0%
!! GCTCATTTTCTTATTCAAAA+TGG + Chr2:1374210-1374229 MsG0280006402.01.T01:CDS 25.0%
!! TCAGTTTCAAAATGAACTTT+TGG + Chr2:1377298-1377317 MsG0280006402.01.T01:intron 25.0%
!! TGCTTCTTGATTTTGTATTT+GGG + Chr2:1378382-1378401 MsG0280006402.01.T01:three_prime_UTR 25.0%
!! TTGCTTCTTGATTTTGTATT+TGG + Chr2:1378381-1378400 MsG0280006402.01.T01:three_prime_UTR 25.0%
!!! AACTGTTTTTGAAACCAAAT+AGG + Chr2:1375974-1375993 MsG0280006402.01.T01:intron 25.0%
!!! AATTTGTTTCTGAATATCAC+AGG - Chr2:1378352-1378371 None:intergenic 25.0%
!!! CATGTAATTAGTTTTGACAT+TGG + Chr2:1375013-1375032 MsG0280006402.01.T01:intron 25.0%
!!! TGAAATCTCAGATTTTTTTG+TGG + Chr2:1378244-1378263 MsG0280006402.01.T01:three_prime_UTR 25.0%
AAAAAGTGGCATTGCTTAAA+AGG - Chr2:1375793-1375812 None:intergenic 30.0%
AAATATTCATGCACTGTGAT+CGG + Chr2:1377527-1377546 MsG0280006402.01.T01:intron 30.0%
AACTAAGTTATTATCGACAG+TGG + Chr2:1376031-1376050 MsG0280006402.01.T01:intron 30.0%
AAGTATCAGTTATTGGTGAA+TGG + Chr2:1375865-1375884 MsG0280006402.01.T01:intron 30.0%
ACATCATATAAGCTCCTATT+TGG - Chr2:1375991-1376010 None:intergenic 30.0%
ACTGTGTATCTTGTTCATTT+CGG + Chr2:1375053-1375072 MsG0280006402.01.T01:intron 30.0%
ATCACCTTAATTATCATTGG+AGG + Chr2:1378055-1378074 MsG0280006402.01.T01:three_prime_UTR 30.0%
ATGTTATAAGCGATTGATTG+AGG + Chr2:1374827-1374846 MsG0280006402.01.T01:intron 30.0%
CAAACATGATATGAGAGAAT+AGG - Chr2:1374875-1374894 None:intergenic 30.0%
CAATCAATCGCTTATAACAT+GGG - Chr2:1374827-1374846 None:intergenic 30.0%
CAATTATGCTACCCTTTAAA+AGG + Chr2:1378030-1378049 MsG0280006402.01.T01:three_prime_UTR 30.0%
CATTGTACAATAGCACATTA+TGG + Chr2:1377973-1377992 MsG0280006402.01.T01:exon 30.0%
GACATCACCTTAATTATCAT+TGG + Chr2:1378052-1378071 MsG0280006402.01.T01:three_prime_UTR 30.0%
GACGTTCATATAAGATCTAA+TGG + Chr2:1376242-1376261 MsG0280006402.01.T01:CDS 30.0%
GATTCTATTCAACAGCTAAT+TGG + Chr2:1377359-1377378 MsG0280006402.01.T01:intron 30.0%
GATTCTATTGGAATTCAGAA+TGG + Chr2:1375819-1375838 MsG0280006402.01.T01:intron 30.0%
GTGTTATACAAAGATTGAGA+TGG + Chr2:1377158-1377177 MsG0280006402.01.T01:intron 30.0%
GTTCAAGAACTTAATCATTC+TGG + Chr2:1377072-1377091 MsG0280006402.01.T01:intron 30.0%
TAAGTTCTTGAACGTGAATA+GGG - Chr2:1377065-1377084 None:intergenic 30.0%
TAGAACTGGAATTGTTGATA+AGG + Chr2:1374947-1374966 MsG0280006402.01.T01:intron 30.0%
TCAATCAATCGCTTATAACA+TGG - Chr2:1374828-1374847 None:intergenic 30.0%
TCACCTTAATTATCATTGGA+GGG + Chr2:1378056-1378075 MsG0280006402.01.T01:three_prime_UTR 30.0%
TCTTCCAGTCATAAATAATG+AGG - Chr2:1376362-1376381 None:intergenic 30.0%
TGATATGAGAGAATAGGTTA+TGG - Chr2:1374869-1374888 None:intergenic 30.0%
TGTCTGTATCATTGTTTCAT+AGG - Chr2:1374380-1374399 None:intergenic 30.0%
TTAAGTTCTTGAACGTGAAT+AGG - Chr2:1377066-1377085 None:intergenic 30.0%
TTACTTCTTCCTTTATTCCA+GGG + Chr2:1376660-1376679 MsG0280006402.01.T01:CDS 30.0%
TTCACCTCATTATTTATGAC+TGG + Chr2:1376355-1376374 MsG0280006402.01.T01:intron 30.0%
TTGAGATGGAATTCTTTCAT+TGG + Chr2:1377022-1377041 MsG0280006402.01.T01:intron 30.0%
TTGGGGAAAATTGTAAACTA+AGG + Chr2:1378400-1378419 MsG0280006402.01.T01:three_prime_UTR 30.0%
TTGTAAACTAAGGAGACATT+TGG + Chr2:1378410-1378429 MsG0280006402.01.T01:three_prime_UTR 30.0%
TTTACTTCTTCCTTTATTCC+AGG + Chr2:1376659-1376678 MsG0280006402.01.T01:CDS 30.0%
TTTCAATATGAGTCATCTTG+AGG + Chr2:1375225-1375244 MsG0280006402.01.T01:intron 30.0%
! AAACTTCAAGTTTCAACACA+TGG - Chr2:1375558-1375577 None:intergenic 30.0%
! AAATATTGGCTGAAGATTGT+CGG + Chr2:1375373-1375392 MsG0280006402.01.T01:CDS 30.0%
! AAATCGTTTATGCATTGATG+GGG + Chr2:1376807-1376826 MsG0280006402.01.T01:CDS 30.0%
! AAGAGTAATAAACTTTAGGG+TGG + Chr2:1377235-1377254 MsG0280006402.01.T01:intron 30.0%
! GAAATCGTTTATGCATTGAT+GGG + Chr2:1376806-1376825 MsG0280006402.01.T01:CDS 30.0%
! GCTTCTTGATTTTGTATTTG+GGG + Chr2:1378383-1378402 MsG0280006402.01.T01:three_prime_UTR 30.0%
! GTTTTATACCCTTAGAAGTT+AGG - Chr2:1378094-1378113 None:intergenic 30.0%
! TAAGGTGATGTCCTTTTAAA+GGG - Chr2:1378044-1378063 None:intergenic 30.0%
! TATAATTGTTTTCTCTCGAC+AGG + Chr2:1376181-1376200 MsG0280006402.01.T01:intron 30.0%
! TATTAAGGACTTGTTTGGAT+TGG + Chr2:1374271-1374290 MsG0280006402.01.T01:intron 30.0%
! TTAAGGTGATGTCCTTTTAA+AGG - Chr2:1378045-1378064 None:intergenic 30.0%
!!! AGCAATGCCACTTTTTTTTT+TGG + Chr2:1375797-1375816 MsG0280006402.01.T01:intron 30.0%
!!! CTATCCATCAAGACTTTTTT+GGG - Chr2:1375717-1375736 None:intergenic 30.0%
!!! CTTGAACTAGTTTTTCAACT+GGG - Chr2:1377922-1377941 None:intergenic 30.0%
!!! TAGTTTTGACATTGGTTATC+TGG + Chr2:1375021-1375040 MsG0280006402.01.T01:intron 30.0%
!!! TCTTGAACTAGTTTTTCAAC+TGG - Chr2:1377923-1377942 None:intergenic 30.0%
AACAAATCACCCTGGAATAA+AGG - Chr2:1376672-1376691 None:intergenic 35.0%
ACTATACTAACAAATCACCC+TGG - Chr2:1376680-1376699 None:intergenic 35.0%
ACTTCAAGCTCAAAGGATAA+GGG - Chr2:1375511-1375530 None:intergenic 35.0%
AGAAAAGTTGTAACTACTCC+TGG + Chr2:1374138-1374157 MsG0280006402.01.T01:CDS 35.0%
AGATTCAACCTGATGTGATT+TGG + Chr2:1374079-1374098 MsG0280006402.01.T01:CDS 35.0%
AGTTCAACGGTAATGTACAA+TGG + Chr2:1374024-1374043 MsG0280006402.01.T01:CDS 35.0%
AGTTTCAACACATGGTAAAC+TGG - Chr2:1375550-1375569 None:intergenic 35.0%
ATTGCGATAGAATTCTTGCT+GGG + Chr2:1378148-1378167 MsG0280006402.01.T01:three_prime_UTR 35.0%
ATTTATAGCCAGTTTCCCTA+TGG + Chr2:1378285-1378304 MsG0280006402.01.T01:three_prime_UTR 35.0%
CAGGACTTGAAAAACTTCTT+CGG - Chr2:1376527-1376546 None:intergenic 35.0%
CATTGGAATACTTGGTATCT+AGG + Chr2:1377039-1377058 MsG0280006402.01.T01:intron 35.0%
CCATAACTTTGTCATCCATA+GGG - Chr2:1378303-1378322 None:intergenic 35.0%
CGAAATCGTTTATGCATTGA+TGG + Chr2:1376805-1376824 MsG0280006402.01.T01:CDS 35.0%
CTGTGTATCTTGTTCATTTC+GGG + Chr2:1375054-1375073 MsG0280006402.01.T01:intron 35.0%
CTTCTCTTTCCTTATCATCT+TGG + Chr2:1374183-1374202 MsG0280006402.01.T01:CDS 35.0%
GAGAGTGAAAGATATTGAAG+CGG + Chr2:1374107-1374126 MsG0280006402.01.T01:CDS 35.0%
GATATCCAAACTCAAAGAGT+CGG - Chr2:1377871-1377890 None:intergenic 35.0%
GATCTTATATGAACGTCATC+TGG - Chr2:1376239-1376258 None:intergenic 35.0%
GATTCAACCTGATGTGATTT+GGG + Chr2:1374080-1374099 MsG0280006402.01.T01:CDS 35.0%
GCAAACATAGGTCAATTTCT+AGG + Chr2:1375591-1375610 MsG0280006402.01.T01:intron 35.0%
GTAAATGATGATTGCATGCT+TGG + Chr2:1377102-1377121 MsG0280006402.01.T01:intron 35.0%
GTAGAAAGAAAGACTTGAAC+TGG + Chr2:1376326-1376345 MsG0280006402.01.T01:intron 35.0%
GTTCAACGGTAATGTACAAT+GGG + Chr2:1374025-1374044 MsG0280006402.01.T01:CDS 35.0%
GTTTATCTAGGGATTCCAAT+CGG + Chr2:1374906-1374925 MsG0280006402.01.T01:intron 35.0%
TAAAACATCACATGAAACCG+AGG - Chr2:1376707-1376726 None:intergenic 35.0%
TAAAATTCAGGGATACCTGA+CGG - Chr2:1377734-1377753 None:intergenic 35.0%
TACAATGGGAAAGAGAGAAT+TGG + Chr2:1374039-1374058 MsG0280006402.01.T01:CDS 35.0%
TAGCTGTGATAATATGCATG+TGG + Chr2:1376071-1376090 MsG0280006402.01.T01:intron 35.0%
TATACCTAAGAAGAGTTCTC+CGG - Chr2:1373941-1373960 None:intergenic 35.0%
TATTGCGATAGAATTCTTGC+TGG + Chr2:1378147-1378166 MsG0280006402.01.T01:three_prime_UTR 35.0%
TCAAGAATTACATCTTCTGC+TGG - Chr2:1377848-1377867 None:intergenic 35.0%
TGAAAGATATTGAAGCGGAA+CGG + Chr2:1374112-1374131 MsG0280006402.01.T01:CDS 35.0%
TGCTTAAAAGGAGAAAAGAG+TGG - Chr2:1375781-1375800 None:intergenic 35.0%
TTATTTCAGTTCTGTCTCCA+AGG - Chr2:1375674-1375693 None:intergenic 35.0%
TTGTACATTACCGTTGAACT+CGG - Chr2:1374024-1374043 None:intergenic 35.0%
TTTATCTAGGGATTCCAATC+GGG + Chr2:1374986-1375005 MsG0280006402.01.T01:intron 35.0%
! AAGTCTTGATGGATAGGATT+TGG + Chr2:1375721-1375740 MsG0280006402.01.T01:intron 35.0%
! AATCGTTTATGCATTGATGG+GGG + Chr2:1376808-1376827 MsG0280006402.01.T01:CDS 35.0%
! ACTTTTATTGGGGCAAACAT+AGG + Chr2:1375579-1375598 MsG0280006402.01.T01:intron 35.0%
! ATGCTTATCTAGAGTCTGTT+TGG + Chr2:1374312-1374331 MsG0280006402.01.T01:intron 35.0%
! CAGAAGTACATATTACGACA+CGG - Chr2:1376550-1376569 None:intergenic 35.0%
! CCAAAAAAGTCTTGATGGAT+AGG + Chr2:1375715-1375734 MsG0280006402.01.T01:intron 35.0%
! TAGACGACTGATGAGTATTT+TGG + Chr2:1377786-1377805 MsG0280006402.01.T01:intron 35.0%
! TATGGATTGAAGATGCATGA+GGG + Chr2:1377991-1378010 MsG0280006402.01.T01:three_prime_UTR 35.0%
! TCATTCACAGTATAGCTTGT+AGG + Chr2:1375111-1375130 MsG0280006402.01.T01:intron 35.0%
! TTATGGATTGAAGATGCATG+AGG + Chr2:1377990-1378009 MsG0280006402.01.T01:three_prime_UTR 35.0%
! TTGACTCCGTATTTTCTTGT+TGG + Chr2:1375139-1375158 MsG0280006402.01.T01:intron 35.0%
!!! AGGGTGGAAAATGCTTTTTT+AGG + Chr2:1377251-1377270 MsG0280006402.01.T01:intron 35.0%
!!! CCTATCCATCAAGACTTTTT+TGG - Chr2:1375718-1375737 None:intergenic 35.0%
!!! TAGTTTTGTGATGCATTTCC+AGG + Chr2:1375257-1375276 MsG0280006402.01.T01:intron 35.0%
AAAATTCAGGGATACCTGAC+GGG - Chr2:1377733-1377752 None:intergenic 40.0%
AGTTACGTGGTTTCATGTTG+AGG + Chr2:1377130-1377149 MsG0280006402.01.T01:intron 40.0%
ATATCTTGATGCTGCTGTCT+GGG + Chr2:1377886-1377905 MsG0280006402.01.T01:CDS 40.0%
CACTTCAAGCTCAAAGGATA+AGG - Chr2:1375512-1375531 None:intergenic 40.0%
CCCTATGGATGACAAAGTTA+TGG + Chr2:1378300-1378319 MsG0280006402.01.T01:three_prime_UTR 40.0%
CCTCCCTCCAATGATAATTA+AGG - Chr2:1378062-1378081 None:intergenic 40.0%
CCTTAATTATCATTGGAGGG+AGG + Chr2:1378059-1378078 MsG0280006402.01.T01:three_prime_UTR 40.0%
GAATTCGAATCCGAGTTCAA+CGG + Chr2:1374011-1374030 MsG0280006402.01.T01:CDS 40.0%
GAGCCTATGAAAACAACTCA+TGG + Chr2:1374655-1374674 MsG0280006402.01.T01:intron 40.0%
GCCATAACTTTGTCATCCAT+AGG - Chr2:1378304-1378323 None:intergenic 40.0%
GTACGAGTTCATGTGATAAG+TGG + Chr2:1375747-1375766 MsG0280006402.01.T01:intron 40.0%
GTTACGTGGTTTCATGTTGA+GGG + Chr2:1377131-1377150 MsG0280006402.01.T01:intron 40.0%
TAACCACACTTCAAGCTCAA+AGG - Chr2:1375518-1375537 None:intergenic 40.0%
TAATTACATGAGCACCCGAT+TGG - Chr2:1375003-1375022 None:intergenic 40.0%
TACTTTCAGGCCAAGTATAG+AGG - Chr2:1375431-1375450 None:intergenic 40.0%
TATCCTTTGAGCTTGAAGTG+TGG + Chr2:1375512-1375531 MsG0280006402.01.T01:intron 40.0%
TGAGCAACACCAAGATGATA+AGG - Chr2:1374195-1374214 None:intergenic 40.0%
TGTCAATGCTTGTTTGCTCA+TGG + Chr2:1375484-1375503 MsG0280006402.01.T01:intron 40.0%
TTGAGAAGGTGAGATGAAGA+AGG - Chr2:1373752-1373771 None:intergenic 40.0%
TTGCGATAGAATTCTTGCTG+GGG + Chr2:1378149-1378168 MsG0280006402.01.T01:three_prime_UTR 40.0%
TTGCTGTAACACAGCTTCTT+TGG + Chr2:1376576-1376595 MsG0280006402.01.T01:CDS 40.0%
TTTGGGTCCCAAAATTCACA+AGG - Chr2:1375700-1375719 None:intergenic 40.0%
TTTGTCATCCATAGGGAAAC+TGG - Chr2:1378296-1378315 None:intergenic 40.0%
! AAGGATTTCTTTTCTTCCGG+CGG - Chr2:1373907-1373926 None:intergenic 40.0%
! ACACCTTCAGTTAGAAGTGT+CGG + Chr2:1374487-1374506 MsG0280006402.01.T01:intron 40.0%
! AGATATCTGGAGGGAGTATA+AGG - Chr2:1376760-1376779 None:intergenic 40.0%
! ATTTCGGGTGCTCATGTAAT+CGG + Chr2:1375069-1375088 MsG0280006402.01.T01:intron 40.0%
! CTTGATGGATAGGATTTGGT+GGG + Chr2:1375725-1375744 MsG0280006402.01.T01:intron 40.0%
! GCGAAGGATTTCTTTTCTTC+CGG - Chr2:1373910-1373929 None:intergenic 40.0%
! TCTTGATGGATAGGATTTGG+TGG + Chr2:1375724-1375743 MsG0280006402.01.T01:intron 40.0%
! TGCATTGATGAGATCTTCCT+TGG - Chr2:1376636-1376655 None:intergenic 40.0%
! TTTGGTGCAAGATATCTGGA+GGG - Chr2:1376769-1376788 None:intergenic 40.0%
!! ACAATGCTATTTCCGAATGC+AGG - Chr2:1377959-1377978 None:intergenic 40.0%
!! ACGCCATGAGTTGTTTTCAT+AGG - Chr2:1374661-1374680 None:intergenic 40.0%
!! AGAGAGAATTGGTGCTGTTA+TGG + Chr2:1374050-1374069 MsG0280006402.01.T01:CDS 40.0%
AAACCGCTTGTGAAGCAGTT+TGG + Chr2:1374630-1374649 MsG0280006402.01.T01:intron 45.0%
AAATTCAGGGATACCTGACG+GGG - Chr2:1377732-1377751 None:intergenic 45.0%
AACCGCTTGTGAAGCAGTTT+GGG + Chr2:1374631-1374650 MsG0280006402.01.T01:intron 45.0%
AATTGAATTGAGTGCGCGTG+GGG - Chr2:1373837-1373856 None:intergenic 45.0%
AGAAGGTGAGATGAAGAAGG+AGG - Chr2:1373749-1373768 None:intergenic 45.0%
AGAATTGAATTGAGTGCGCG+TGG - Chr2:1373839-1373858 None:intergenic 45.0%
AGAGTGAGGTTAACGTCGTT+AGG - Chr2:1373811-1373830 None:intergenic 45.0%
AGATCTAATGGGAGAGTTCG+AGG + Chr2:1376254-1376273 MsG0280006402.01.T01:CDS 45.0%
AGTACATATTACGACACGGC+AGG - Chr2:1376546-1376565 None:intergenic 45.0%
ATGAAGAAGGAGGAGATGGA+TGG - Chr2:1373739-1373758 None:intergenic 45.0%
ATGCTTGGTCACTAGTTACG+TGG + Chr2:1377117-1377136 MsG0280006402.01.T01:intron 45.0%
ATTGGCTGAAGATTGTCGGA+AGG + Chr2:1375377-1375396 MsG0280006402.01.T01:CDS 45.0%
CCCTTAGAAGTTAGGAACTG+CGG - Chr2:1378086-1378105 None:intergenic 45.0%
CCGCAGTTCCTAACTTCTAA+GGG + Chr2:1378083-1378102 MsG0280006402.01.T01:three_prime_UTR 45.0%
CGATTTCGAAACATCGTAGC+TGG - Chr2:1376793-1376812 None:intergenic 45.0%
GAATTGAATTGAGTGCGCGT+GGG - Chr2:1373838-1373857 None:intergenic 45.0%
GAGTGAGGTTAACGTCGTTA+GGG - Chr2:1373810-1373829 None:intergenic 45.0%
GATACTACTGCTCCTGCATT+CGG + Chr2:1377944-1377963 MsG0280006402.01.T01:CDS 45.0%
GATATCTTGATGCTGCTGTC+TGG + Chr2:1377885-1377904 MsG0280006402.01.T01:CDS 45.0%
GCAGCAGAGAAACTAAAACC+AGG - Chr2:1374159-1374178 None:intergenic 45.0%
GGAGCTTATATGATGTGCAG+AGG + Chr2:1375995-1376014 MsG0280006402.01.T01:intron 45.0%
GGGACCCAAAAAAGTCTTGA+TGG + Chr2:1375710-1375729 MsG0280006402.01.T01:intron 45.0%
GGTGGATCAGTTTGATTCCA+AGG + Chr2:1376616-1376635 MsG0280006402.01.T01:CDS 45.0%
GGTTAACGTCGTTAGGGAAA+CGG - Chr2:1373804-1373823 None:intergenic 45.0%
GTATGGGATTGCAAGGGATA+GGG + Chr2:1377670-1377689 MsG0280006402.01.T01:CDS 45.0%
TACATTGCTGACGAGAACCT+TGG + Chr2:1375654-1375673 MsG0280006402.01.T01:intron 45.0%
TCCGCAGTTCCTAACTTCTA+AGG + Chr2:1378082-1378101 MsG0280006402.01.T01:three_prime_UTR 45.0%
TCTTCTCCGTTCACGCAAAT+GGG + Chr2:1373697-1373716 MsG0280006402.01.T01:exon 45.0%
TGAGATGAAGAAGGAGGAGA+TGG - Chr2:1373743-1373762 None:intergenic 45.0%
TGCGATAGAATTCTTGCTGG+GGG + Chr2:1378150-1378169 MsG0280006402.01.T01:three_prime_UTR 45.0%
TTGGCTGAAGATTGTCGGAA+GGG + Chr2:1375378-1375397 MsG0280006402.01.T01:CDS 45.0%
! AACGGAAACGGAAAGTGTGA+CGG - Chr2:1373786-1373805 None:intergenic 45.0%
! AACGGAAAGTGTGACGGTAA+CGG - Chr2:1373780-1373799 None:intergenic 45.0%
! CAACTACGCGAAGTACTTTC+AGG - Chr2:1375444-1375463 None:intergenic 45.0%
! CTTCTAACTGAAGGTGTGTC+TGG - Chr2:1374484-1374503 None:intergenic 45.0%
! CTTGACCGACTCTTTGAGTT+TGG + Chr2:1377863-1377882 MsG0280006402.01.T01:CDS 45.0%
! CTTTGGTGCAAGATATCTGG+AGG - Chr2:1376770-1376789 None:intergenic 45.0%
! TTTCGGGTGCTCATGTAATC+GGG + Chr2:1375070-1375089 MsG0280006402.01.T01:intron 45.0%
!! CTGAAAGTACTTCGCGTAGT+TGG + Chr2:1375442-1375461 MsG0280006402.01.T01:intron 45.0%
!! TGGCTTTGGTGCAAGATATC+TGG - Chr2:1376773-1376792 None:intergenic 45.0%
!!! GGTTTTAGTTTCTCTGCTGC+TGG + Chr2:1374159-1374178 MsG0280006402.01.T01:CDS 45.0%
!! TATTTAATATTTACAAAATA+GGG + Chr2:1378208-1378227 MsG0280006402.01.T01:three_prime_UTR 5.0%
!! TTATTTAATATTTACAAAAT+AGG + Chr2:1378207-1378226 MsG0280006402.01.T01:three_prime_UTR 5.0%
AAGGAGGAGATGGATGGAGT+TGG - Chr2:1373733-1373752 None:intergenic 50.0%
AATTCAGGGATACCTGACGG+GGG - Chr2:1377731-1377750 None:intergenic 50.0%
ACCGACATCTGCAGCACAAA+CGG + Chr2:1376849-1376868 MsG0280006402.01.T01:CDS 50.0%
ACCGTTTGTGCTGCAGATGT+CGG - Chr2:1376853-1376872 None:intergenic 50.0%
ACCTAAGAAGAGTTCTCCGG+TGG - Chr2:1373938-1373957 None:intergenic 50.0%
AGAAGAACCAGCTAATGGCG+TGG - Chr2:1375286-1375305 None:intergenic 50.0%
ATGCACCCCATTTGCGTGAA+CGG - Chr2:1373706-1373725 None:intergenic 50.0%
CATTTGCGTGAACGGAGAAG+AGG - Chr2:1373698-1373717 None:intergenic 50.0%
CCAGCAGAAGAACCAGCTAA+TGG - Chr2:1375291-1375310 None:intergenic 50.0%
CGTATGGGATTGCAAGGGAT+AGG + Chr2:1377669-1377688 MsG0280006402.01.T01:CDS 50.0%
CGTCGTTAGGGAAACGGAAA+CGG - Chr2:1373798-1373817 None:intergenic 50.0%
CTCCCAAACTGCTTCACAAG+CGG - Chr2:1374636-1374655 None:intergenic 50.0%
CTCTGCTCCCAAATCACATC+AGG - Chr2:1374090-1374109 None:intergenic 50.0%
CTCTTCTCCGTTCACGCAAA+TGG + Chr2:1373696-1373715 MsG0280006402.01.T01:exon 50.0%
CTTCTCCGTTCACGCAAATG+GGG + Chr2:1373698-1373717 MsG0280006402.01.T01:exon 50.0%
GAATTCTCGAACATCGCCAC+CGG - Chr2:1373997-1374016 None:intergenic 50.0%
GCGATAGAATTCTTGCTGGG+GGG + Chr2:1378151-1378170 MsG0280006402.01.T01:three_prime_UTR 50.0%
GCGTTCTCGGGATTACAATC+TGG - Chr2:1377702-1377721 None:intergenic 50.0%
GTCTGTGCTGTAGTTGCTTC+TGG + Chr2:1375318-1375337 MsG0280006402.01.T01:CDS 50.0%
GTGGTTTCATGTTGAGGGCT+TGG + Chr2:1377136-1377155 MsG0280006402.01.T01:intron 50.0%
TGATCCACCAACAAACCCCT+GGG - Chr2:1376605-1376624 None:intergenic 50.0%
TGGCTGAAGATTGTCGGAAG+GGG + Chr2:1375379-1375398 MsG0280006402.01.T01:CDS 50.0%
! ACAGCTTCTTTGGAGACCCA+GGG + Chr2:1376586-1376605 MsG0280006402.01.T01:CDS 50.0%
! CCATTAGCTGGTTCTTCTGC+TGG + Chr2:1375288-1375307 MsG0280006402.01.T01:CDS 50.0%
! CGAAACATCGTAGCTGGCTT+TGG - Chr2:1376787-1376806 None:intergenic 50.0%
! GATTTCTTTTCTTCCGGCGG+AGG - Chr2:1373904-1373923 None:intergenic 50.0%
! GCACCGACACTTCTAACTGA+AGG - Chr2:1374493-1374512 None:intergenic 50.0%
! TGGGGGTATGCCTCTATACT+TGG + Chr2:1375418-1375437 MsG0280006402.01.T01:intron 50.0%
!! AGTTGCTTCTGGAGCTAGCA+TGG + Chr2:1375329-1375348 MsG0280006402.01.T01:CDS 50.0%
AGGAGAGGGAGAAGGAGTTG+TGG - Chr2:1373884-1373903 None:intergenic 55.0%
ATTCTTGCTGGGGGGAGAAG+AGG + Chr2:1378159-1378178 MsG0280006402.01.T01:three_prime_UTR 55.0%
CAGCTAATGGCGTGGTTTCC+TGG - Chr2:1375278-1375297 None:intergenic 55.0%
CAGGAAACCACGCCATTAGC+TGG + Chr2:1375276-1375295 MsG0280006402.01.T01:intron 55.0%
CTGAAGATTGTCGGAAGGGG+GGG + Chr2:1375382-1375401 MsG0280006402.01.T01:CDS 55.0%
CTGATCCACCAACAAACCCC+TGG - Chr2:1376606-1376625 None:intergenic 55.0%
GCCACCGGAGAACTCTTCTT+AGG + Chr2:1373934-1373953 MsG0280006402.01.T01:CDS 55.0%
GCTGAAGATTGTCGGAAGGG+GGG + Chr2:1375381-1375400 MsG0280006402.01.T01:CDS 55.0%
GGCTGAAGATTGTCGGAAGG+GGG + Chr2:1375380-1375399 MsG0280006402.01.T01:CDS 55.0%
GTTCACGCAAATGGGGTGCA+TGG + Chr2:1373705-1373724 MsG0280006402.01.T01:exon 55.0%
GTTTGTGCTGCAGATGTCGG+TGG - Chr2:1376850-1376869 None:intergenic 55.0%
TGATGCTGCTGTCTGGGCAA+AGG + Chr2:1377892-1377911 MsG0280006402.01.T01:CDS 55.0%
TTCTTGCTGGGGGGAGAAGA+GGG + Chr2:1378160-1378179 MsG0280006402.01.T01:three_prime_UTR 55.0%
TTGGAGACCCAGGGGTTTGT+TGG + Chr2:1376595-1376614 MsG0280006402.01.T01:CDS 55.0%
! CACAGCTTCTTTGGAGACCC+AGG + Chr2:1376585-1376604 MsG0280006402.01.T01:CDS 55.0%
! CAGCTTCTTTGGAGACCCAG+GGG + Chr2:1376587-1376606 MsG0280006402.01.T01:CDS 55.0%
! CGGTAACGGTGAGCTTGAGA+AGG - Chr2:1373766-1373785 None:intergenic 55.0%
! GAGTGTTGTTGAACGCGTGG+TGG - Chr2:1373862-1373881 None:intergenic 55.0%
! TTTTCTTCCGGCGGAGGAGA+GGG - Chr2:1373898-1373917 None:intergenic 55.0%
!! GTGGAGTGTTGTTGAACGCG+TGG - Chr2:1373865-1373884 None:intergenic 55.0%
AAATCCTTCGCCGTCGCCAC+CGG + Chr2:1373919-1373938 MsG0280006402.01.T01:CDS 60.0%
ACGGGGGCTAGATGCGTTCT+CGG - Chr2:1377715-1377734 None:intergenic 60.0%
GAAGAGTTCTCCGGTGGCGA+CGG - Chr2:1373932-1373951 None:intergenic 60.0%
GGAAGGGGGGGACTGCATTT+CGG + Chr2:1375394-1375413 MsG0280006402.01.T01:CDS 60.0%
TCTTGCTGGGGGGAGAAGAG+GGG + Chr2:1378161-1378180 MsG0280006402.01.T01:three_prime_UTR 60.0%
! CAACAGCCGCGAATCGACTC+CGG + Chr2:1373975-1373994 MsG0280006402.01.T01:CDS 60.0%
! CTTTTCTTCCGGCGGAGGAG+AGG - Chr2:1373899-1373918 None:intergenic 60.0%
!! GAGACCCAGGGGTTTGTTGG+TGG + Chr2:1376598-1376617 MsG0280006402.01.T01:CDS 60.0%
CGGGGGCTAGATGCGTTCTC+GGG - Chr2:1377714-1377733 None:intergenic 65.0%
GAACGCATCTAGCCCCCGTC+AGG + Chr2:1377716-1377735 MsG0280006402.01.T01:CDS 65.0%
GGGGACTGCATTTCGGCTGG+GGG + Chr2:1375401-1375420 MsG0280006402.01.T01:CDS 65.0%
GGGGGACTGCATTTCGGCTG+GGG + Chr2:1375400-1375419 MsG0280006402.01.T01:CDS 65.0%
GGGGGGACTGCATTTCGGCT+GGG + Chr2:1375399-1375418 MsG0280006402.01.T01:CDS 65.0%
TCCTTCTCCCTCTCCTCCGC+CGG + Chr2:1373888-1373907 MsG0280006402.01.T01:CDS 65.0%
TGCGCGTGGGGAGAAGAGTG+AGG - Chr2:1373825-1373844 None:intergenic 65.0%
!! TCGCCACCGGAGTCGATTCG+CGG - Chr2:1373984-1374003 None:intergenic 65.0%
GGGGGGGACTGCATTTCGGC+TGG + Chr2:1375398-1375417 MsG0280006402.01.T01:CDS 70.0%
TCCGGCGGAGGAGAGGGAGA+AGG - Chr2:1373892-1373911 None:intergenic 70.0%
TTCTCCGGTGGCGACGGCGA+AGG - Chr2:1373926-1373945 None:intergenic 70.0%
! CAGCCGCGAATCGACTCCGG+TGG + Chr2:1373978-1373997 MsG0280006402.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 1373666 1378509 1373666 ID=MsG0280006402.01;Name=MsG0280006402.01
Chr2 mRNA 1373666 1378509 1373666 ID=MsG0280006402.01.T01;Parent=MsG0280006402.01;Name=MsG0280006402.01.T01;_AED=0.42;_eAED=0.42;_QI=49|1|1|1|1|1|7|524|401
Chr2 exon 1373666 1374242 1373666 ID=MsG0280006402.01.T01:exon:51;Parent=MsG0280006402.01.T01
Chr2 exon 1375279 1375422 1375279 ID=MsG0280006402.01.T01:exon:52;Parent=MsG0280006402.01.T01
Chr2 exon 1376203 1376275 1376203 ID=MsG0280006402.01.T01:exon:53;Parent=MsG0280006402.01.T01
Chr2 exon 1376576 1376681 1376576 ID=MsG0280006402.01.T01:exon:54;Parent=MsG0280006402.01.T01
Chr2 exon 1376774 1376870 1376774 ID=MsG0280006402.01.T01:exon:55;Parent=MsG0280006402.01.T01
Chr2 exon 1377642 1377737 1377642 ID=MsG0280006402.01.T01:exon:56;Parent=MsG0280006402.01.T01
Chr2 exon 1377824 1378509 1377824 ID=MsG0280006402.01.T01:exon:57;Parent=MsG0280006402.01.T01
Chr2 five_prime_UTR 1373666 1373714 1373666 ID=MsG0280006402.01.T01:five_prime_utr;Parent=MsG0280006402.01.T01
Chr2 CDS 1373715 1374242 1373715 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 CDS 1375279 1375422 1375279 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 CDS 1376203 1376275 1376203 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 CDS 1376576 1376681 1376576 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 CDS 1376774 1376870 1376774 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 CDS 1377642 1377737 1377642 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 CDS 1377824 1377985 1377824 ID=MsG0280006402.01.T01:cds;Parent=MsG0280006402.01.T01
Chr2 three_prime_UTR 1377986 1378509 1377986 ID=MsG0280006402.01.T01:three_prime_utr;Parent=MsG0280006402.01.T01
Gene Sequence

>MsG0280006402.01.T01

ATGGGGTGCATGGCTCCAACTCCATCCATCTCCTCCTTCTTCATCTCACCTTCTCAAGCTCACCGTTACCGTCACACTTTCCGTTTCCGTTTCCCTAACGACGTTAACCTCACTCTTCTCCCCACGCGCACTCAATTCAATTCTCCACCACGCGTTCAACAACACTCCACAACTCCTTCTCCCTCTCCTCCGCCGGAAGAAAAGAAATCCTTCGCCGTCGCCACCGGAGAACTCTTCTTAGGTATAGCTTCACGTCTCATCAACAGCCGCGAATCGACTCCGGTGGCGATGTTCGAGAATTCGAATCCGAGTTCAACGGTAATGTACAATGGGAAAGAGAGAATTGGTGCTGTTATGGAAGATGAGATTCAACCTGATGTGATTTGGGAGCAGAGAGTGAAAGATATTGAAGCGGAACGGAGTAGAAAAGTTGTAACTACTCCTGGTTTTAGTTTCTCTGCTGCTGGTCTTCTCTTTCCTTATCATCTTGGTGTTGCTCATTTTCTTATTCAAAATGGTTACATTAAGGAAACCACGCCATTAGCTGGTTCTTCTGCTGGAGCTATCGTCTGTGCTGTAGTTGCTTCTGGAGCTAGCATGGAAGAAGCTTTGATAGCTACTAAAATATTGGCTGAAGATTGTCGGAAGGGGGGGACTGCATTTCGGCTGGGGGCTGTTCTGCGTGATATTCTTCAGAAGTTTTTGCCAGATGACGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTAACACAGCTTCTTTGGAGACCCAGGGGTTTGTTGGTGGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACTTCTTCCTTTATTCCAGGATATCTTGCACCAAAGCCAGCTACGATGTTTCGAAATCGTTTATGCATTGATGGGGGTTTGACGTTGTTTATGCCACCGACATCTGCAGCACAAACGATACGTGTTTGTGCTTTTCCAGCAGGTCGTATGGGATTGCAAGGGATAGGGATTAGTCCAGATTGTAATCCCGAGAACGCATCTAGCCCCCGTCAGCTTTTGAATTGGGCTCTTGAGCCAGCAGAAGATGTAATTCTTGACCGACTCTTTGAGTTTGGATATCTTGATGCTGCTGTCTGGGCAAAGGAAAACCCAGTTGAAAAACTAGTTCAAGATGATACTACTGCTCCTGCATTCGGAAATAGCATTGTACAATAG

Protein sequence

>MsG0280006402.01.T01

MGCMAPTPSISSFFISPSQAHRYRHTFRFRFPNDVNLTLLPTRTQFNSPPRVQQHSTTPSPSPPPEEKKSFAVATGELFLGIASRLINSRESTPVAMFENSNPSSTVMYNGKERIGAVMEDEIQPDVIWEQRVKDIEAERSRKVVTTPGFSFSAAGLLFPYHLGVAHFLIQNGYIKETTPLAGSSAGAIVCAVVASGASMEEALIATKILAEDCRKGGTAFRLGAVLRDILQKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPKPATMFRNRLCIDGGLTLFMPPTSAAQTIRVCAFPAGRMGLQGIGISPDCNPENASSPRQLLNWALEPAEDVILDRLFEFGYLDAAVWAKENPVEKLVQDDTTAPAFGNSIVQ*