Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046923.01.T01 | XP_013458165.1 | 89.667 | 300 | 10 | 3 | 18 | 297 | 60 | 358 | 0 | 543 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046923.01.T01 | Q8LA32 | 56.126 | 253 | 86 | 5 | 63 | 297 | 112 | 357 | 4.70E-89 | 272 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046923.01.T01 | A0A072US66 | 89.667 | 300 | 10 | 3 | 18 | 297 | 60 | 358 | 0.0 | 543 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000002.01 | MsG0880046923.01 | 0.807457 | 5.008545e-50 | 2.791132e-47 |
MsG0180000367.01 | MsG0880046923.01 | 0.813146 | 2.967415e-51 | 1.922362e-48 |
MsG0180001515.01 | MsG0880046923.01 | 0.833236 | 5.989995e-56 | 6.856486e-53 |
MsG0880044026.01 | MsG0880046923.01 | 0.800500 | 1.399639e-48 | 6.527370e-46 |
MsG0880044105.01 | MsG0880046923.01 | -0.800755 | 1.241814e-48 | 5.828741e-46 |
MsG0880044548.01 | MsG0880046923.01 | -0.811784 | 5.886794e-51 | 3.677363e-48 |
MsG0880046324.01 | MsG0880046923.01 | -0.806075 | 9.807733e-50 | 5.274340e-47 |
MsG0880046402.01 | MsG0880046923.01 | 0.814349 | 1.611997e-51 | 1.079035e-48 |
MsG0880046403.01 | MsG0880046923.01 | 0.841914 | 3.557698e-58 | 5.305855e-55 |
MsG0880046408.01 | MsG0880046923.01 | -0.802588 | 5.225685e-49 | 2.569565e-46 |
MsG0880046870.01 | MsG0880046923.01 | 0.824706 | 6.979284e-54 | 6.230713e-51 |
MsG0880046923.01 | MsG0880047090.01 | 0.839166 | 1.864058e-57 | 2.552667e-54 |
MsG0880046923.01 | MsG0880047312.01 | 0.811042 | 8.532014e-51 | 5.226708e-48 |
MsG0880046923.01 | MsG0880047460.01 | 0.810810 | 9.580009e-51 | 5.832305e-48 |
MsG0880046923.01 | MsG0880047537.01 | 0.807317 | 5.362360e-50 | 2.977445e-47 |
MsG0880046923.01 | MsG0880047697.01 | 0.802713 | 4.924024e-49 | 2.429015e-46 |
MsG0180003484.01 | MsG0880046923.01 | 0.807879 | 4.073752e-50 | 2.295132e-47 |
MsG0180004059.01 | MsG0880046923.01 | 0.825892 | 3.658043e-54 | 3.377833e-51 |
MsG0180004202.01 | MsG0880046923.01 | 0.803134 | 4.029135e-49 | 2.008928e-46 |
MsG0180005127.01 | MsG0880046923.01 | 0.838510 | 2.755094e-57 | 3.698306e-54 |
MsG0180005146.01 | MsG0880046923.01 | 0.845248 | 4.570371e-59 | 7.570505e-56 |
MsG0180005819.01 | MsG0880046923.01 | 0.805851 | 1.093367e-49 | 5.846514e-47 |
MsG0180005898.01 | MsG0880046923.01 | -0.820034 | 8.490033e-53 | 6.643276e-50 |
MsG0180005906.01 | MsG0880046923.01 | 0.802578 | 5.250402e-49 | 2.581001e-46 |
MsG0180006010.01 | MsG0880046923.01 | 0.819575 | 1.080563e-52 | 8.347584e-50 |
MsG0180006183.01 | MsG0880046923.01 | 0.837476 | 5.081474e-57 | 6.608965e-54 |
MsG0180006253.01 | MsG0880046923.01 | 0.868379 | 6.820931e-66 | 2.462106e-62 |
MsG0280006316.01 | MsG0880046923.01 | 0.826161 | 3.157235e-54 | 2.937721e-51 |
MsG0280006402.01 | MsG0880046923.01 | -0.823549 | 1.304857e-53 | 1.126999e-50 |
MsG0780040459.01 | MsG0880046923.01 | 0.807408 | 5.130149e-50 | 2.855233e-47 |
MsG0780040670.01 | MsG0880046923.01 | 0.827111 | 1.874146e-54 | 1.792018e-51 |
MsG0780040716.01 | MsG0880046923.01 | 0.820487 | 6.683267e-53 | 5.295332e-50 |
MsG0780040719.01 | MsG0880046923.01 | 0.841809 | 3.792265e-58 | 5.636785e-55 |
MsG0780040977.01 | MsG0880046923.01 | 0.810636 | 1.044759e-50 | 6.330843e-48 |
MsG0780040991.01 | MsG0880046923.01 | 0.820118 | 8.119400e-53 | 6.368811e-50 |
MsG0780041036.01 | MsG0880046923.01 | 0.814943 | 1.191124e-51 | 8.101582e-49 |
MsG0780041403.01 | MsG0880046923.01 | 0.808427 | 3.114582e-50 | 1.780345e-47 |
MsG0780041823.01 | MsG0880046923.01 | 0.827490 | 1.520445e-54 | 1.470041e-51 |
MsG0880042005.01 | MsG0880046923.01 | -0.806652 | 7.411845e-50 | 4.044780e-47 |
MsG0880042122.01 | MsG0880046923.01 | 0.802045 | 6.760139e-49 | 3.278364e-46 |
MsG0880042392.01 | MsG0880046923.01 | 0.801353 | 9.370982e-49 | 4.465731e-46 |
MsG0880042633.01 | MsG0880046923.01 | 0.811914 | 5.516135e-51 | 3.457633e-48 |
MsG0880043495.01 | MsG0880046923.01 | 0.804290 | 2.318596e-49 | 1.190952e-46 |
MsG0280010617.01 | MsG0880046923.01 | 0.830513 | 2.815864e-55 | 2.973040e-52 |
MsG0280010854.01 | MsG0880046923.01 | -0.818262 | 2.148983e-52 | 1.600689e-49 |
MsG0280010998.01 | MsG0880046923.01 | -0.807780 | 4.276563e-50 | 2.403269e-47 |
MsG0280011020.01 | MsG0880046923.01 | -0.804276 | 2.334442e-49 | 1.198638e-46 |
MsG0280011269.01 | MsG0880046923.01 | 0.813785 | 2.146628e-51 | 1.415071e-48 |
MsG0280011271.01 | MsG0880046923.01 | 0.815118 | 1.089156e-51 | 7.443169e-49 |
MsG0380013213.01 | MsG0880046923.01 | 0.814475 | 1.511873e-51 | 1.015520e-48 |
MsG0380014646.01 | MsG0880046923.01 | -0.813794 | 2.137032e-51 | 1.409100e-48 |
MsG0680031200.01 | MsG0880046923.01 | 0.806098 | 9.699612e-50 | 5.219242e-47 |
MsG0680032026.01 | MsG0880046923.01 | 0.800212 | 1.602295e-48 | 7.418017e-46 |
MsG0680032245.01 | MsG0880046923.01 | -0.806329 | 8.671580e-50 | 4.693692e-47 |
MsG0680032461.01 | MsG0880046923.01 | 0.820414 | 6.945590e-53 | 5.492500e-50 |
MsG0680034974.01 | MsG0880046923.01 | 0.803307 | 3.710662e-49 | 1.858377e-46 |
MsG0480018692.01 | MsG0880046923.01 | 0.809579 | 1.765173e-50 | 1.040315e-47 |
MsG0480019346.01 | MsG0880046923.01 | 0.808790 | 2.604353e-50 | 1.502813e-47 |
MsG0480019348.01 | MsG0880046923.01 | 0.809572 | 1.770702e-50 | 1.043392e-47 |
MsG0480019573.01 | MsG0880046923.01 | -0.822792 | 1.959852e-53 | 1.656976e-50 |
MsG0480019666.01 | MsG0880046923.01 | 0.812041 | 5.175927e-51 | 3.255537e-48 |
MsG0480019817.01 | MsG0880046923.01 | 0.811057 | 8.469640e-51 | 5.190505e-48 |
MsG0480020350.01 | MsG0880046923.01 | -0.805719 | 1.165450e-49 | 6.210918e-47 |
MsG0480020797.01 | MsG0880046923.01 | 0.805855 | 1.091370e-49 | 5.836357e-47 |
MsG0480021175.01 | MsG0880046923.01 | 0.809904 | 1.502572e-50 | 8.931532e-48 |
MsG0480021226.01 | MsG0880046923.01 | 0.826715 | 2.329840e-54 | 2.202205e-51 |
MsG0480021234.01 | MsG0880046923.01 | 0.826070 | 3.319483e-54 | 3.080500e-51 |
MsG0480021436.01 | MsG0880046923.01 | 0.821601 | 3.703093e-53 | 3.026290e-50 |
MsG0480022622.01 | MsG0880046923.01 | -0.803632 | 3.177940e-49 | 1.604948e-46 |
MsG0580024567.01 | MsG0880046923.01 | -0.802202 | 6.274570e-49 | 3.055054e-46 |
MsG0580024649.01 | MsG0880046923.01 | 0.943704 | 7.445572e-103 | 1.020711e-97 |
MsG0580024994.01 | MsG0880046923.01 | 0.849646 | 2.829175e-60 | 5.399396e-57 |
MsG0580025007.01 | MsG0880046923.01 | 0.821743 | 3.433017e-53 | 2.816932e-50 |
MsG0580025024.01 | MsG0880046923.01 | 0.828480 | 8.783046e-55 | 8.740918e-52 |
MsG0580025413.01 | MsG0880046923.01 | -0.808073 | 3.704402e-50 | 2.097811e-47 |
MsG0580025896.01 | MsG0880046923.01 | 0.810900 | 9.157372e-51 | 5.588842e-48 |
MsG0380015393.01 | MsG0880046923.01 | 0.850302 | 1.853769e-60 | 3.615124e-57 |
MsG0380015496.01 | MsG0880046923.01 | -0.819110 | 1.379046e-52 | 1.051622e-49 |
MsG0380015711.01 | MsG0880046923.01 | 0.830484 | 2.861789e-55 | 3.018992e-52 |
MsG0380016458.01 | MsG0880046923.01 | 0.821412 | 4.094767e-53 | 3.328839e-50 |
MsG0380016819.01 | MsG0880046923.01 | 0.804965 | 1.676729e-49 | 8.764007e-47 |
MsG0380016845.01 | MsG0880046923.01 | 0.802792 | 4.742118e-49 | 2.344071e-46 |
MsG0380017200.01 | MsG0880046923.01 | 0.841156 | 5.636810e-58 | 8.209666e-55 |
MsG0380017666.01 | MsG0880046923.01 | 0.815705 | 8.062158e-52 | 5.599388e-49 |
MsG0380017773.01 | MsG0880046923.01 | -0.805935 | 1.049735e-49 | 5.625118e-47 |
MsG0480018362.01 | MsG0880046923.01 | 0.831596 | 1.525792e-55 | 1.663668e-52 |
MsG0580027447.01 | MsG0880046923.01 | 0.820387 | 7.047035e-53 | 5.568478e-50 |
MsG0580027517.01 | MsG0880046923.01 | 0.808622 | 2.828782e-50 | 1.625125e-47 |
MsG0580027751.01 | MsG0880046923.01 | 0.806589 | 7.645619e-50 | 4.165736e-47 |
MsG0580027752.01 | MsG0880046923.01 | 0.806654 | 7.405009e-50 | 4.041247e-47 |
MsG0580027753.01 | MsG0880046923.01 | 0.801468 | 8.878103e-49 | 4.243018e-46 |
MsG0580029937.01 | MsG0880046923.01 | 0.816130 | 6.481410e-52 | 4.554058e-49 |
MsG0580029938.01 | MsG0880046923.01 | 0.818361 | 2.040992e-52 | 1.524611e-49 |
MsG0580030141.01 | MsG0880046923.01 | 0.819524 | 1.110346e-52 | 8.564989e-50 |
MsG0680030382.01 | MsG0880046923.01 | 0.810347 | 1.205815e-50 | 7.251002e-48 |
MsG0280006851.01 | MsG0880046923.01 | 0.812652 | 3.806033e-51 | 2.433605e-48 |
MsG0280007511.01 | MsG0880046923.01 | -0.818415 | 1.983933e-52 | 1.484242e-49 |
MsG0280007689.01 | MsG0880046923.01 | 0.824811 | 6.592485e-54 | 5.902891e-51 |
MsG0280007874.01 | MsG0880046923.01 | 0.828230 | 1.008977e-54 | 9.968174e-52 |
MsG0280009253.01 | MsG0880046923.01 | 0.807191 | 5.702590e-50 | 3.155895e-47 |
MsG0280009542.01 | MsG0880046923.01 | -0.804988 | 1.658432e-49 | 8.673137e-47 |
MsG0280010539.01 | MsG0880046923.01 | 0.802374 | 5.783849e-49 | 2.828748e-46 |
MsG0780035932.01 | MsG0880046923.01 | 0.813570 | 2.393973e-51 | 1.568960e-48 |
MsG0780036258.01 | MsG0880046923.01 | 0.810275 | 1.249712e-50 | 7.500619e-48 |
MsG0780036944.01 | MsG0880046923.01 | 0.818166 | 2.258882e-52 | 1.678168e-49 |
MsG0780038307.01 | MsG0880046923.01 | 0.817653 | 2.949240e-52 | 2.160447e-49 |
MsG0780038914.01 | MsG0880046923.01 | 0.802658 | 5.053797e-49 | 2.489443e-46 |
MsG0780038919.01 | MsG0880046923.01 | 0.845078 | 5.081919e-59 | 8.371931e-56 |
MsG0780039912.01 | MsG0880046923.01 | 0.804296 | 2.312007e-49 | 1.187750e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046923.01.T01 | MTR_4g117250 | 89.667 | 300 | 10 | 3 | 18 | 297 | 60 | 358 | 0.0 | 543 |
MsG0880046923.01.T01 | MTR_2g022210 | 57.413 | 317 | 96 | 6 | 18 | 296 | 70 | 385 | 1.10e-115 | 338 |
MsG0880046923.01.T01 | MTR_1g064680 | 44.170 | 283 | 130 | 6 | 33 | 293 | 67 | 343 | 4.29e-80 | 246 |
MsG0880046923.01.T01 | MTR_7g101150 | 47.244 | 254 | 113 | 4 | 60 | 296 | 103 | 352 | 3.68e-79 | 244 |
MsG0880046923.01.T01 | MTR_7g101150 | 49.367 | 237 | 109 | 4 | 60 | 296 | 103 | 328 | 1.01e-77 | 239 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046923.01.T01 | AT3G06140 | 56.126 | 253 | 86 | 5 | 63 | 297 | 112 | 357 | 4.79e-90 | 272 |
MsG0880046923.01.T01 | AT5G19080 | 49.196 | 311 | 113 | 10 | 10 | 297 | 88 | 376 | 9.12e-89 | 270 |
MsG0880046923.01.T01 | AT3G09770 | 46.718 | 259 | 111 | 5 | 57 | 293 | 117 | 370 | 4.09e-75 | 235 |
MsG0880046923.01.T01 | AT5G03200 | 48.016 | 252 | 100 | 5 | 60 | 294 | 100 | 337 | 4.95e-75 | 233 |
MsG0880046923.01.T01 | AT3G53410 | 39.803 | 304 | 140 | 7 | 12 | 297 | 20 | 298 | 8.95e-70 | 218 |
MsG0880046923.01.T01 | AT3G09770 | 43.172 | 227 | 102 | 5 | 57 | 261 | 117 | 338 | 6.95e-55 | 181 |
Find 95 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTCTGGCCAATTCCTTTC+TGG | 0.102959 | 8:+79972856 | None:intergenic |
CTGATGGCTGACAAAATTTC+TGG | 0.178200 | 8:+79972841 | None:intergenic |
TTCTTATTCATCTTGGATTC+AGG | 0.179706 | 8:+79972201 | None:intergenic |
GCAAATAACTCAAGCTGTTT+TGG | 0.219800 | 8:-79972665 | MsG0880046923.01.T01:CDS |
TTACCTTCTTTGCAGTTTCA+TGG | 0.243842 | 8:+79973786 | None:intergenic |
GATTTCGATCGTAATGATTC+TGG | 0.244457 | 8:-79972526 | MsG0880046923.01.T01:CDS |
CAATTGGTTGGCGGCATATA+GGG | 0.281867 | 8:+79972276 | None:intergenic |
ATCTCTATCAGTTGCTCAAT+TGG | 0.285101 | 8:+79972260 | None:intergenic |
CGAGTGTGCAAAAGCTTTGC+GGG | 0.313846 | 8:-79972315 | MsG0880046923.01.T01:CDS |
TCAATTGGTTGGCGGCATAT+AGG | 0.323799 | 8:+79972275 | None:intergenic |
AATCATGTTCTTATTCATCT+TGG | 0.323829 | 8:+79972194 | None:intergenic |
CAGTGACACTGGTCCTTTCC+AGG | 0.340830 | 8:-79972635 | MsG0880046923.01.T01:CDS |
GGCCAATTCCTTTCTGGAAT+GGG | 0.342924 | 8:+79972862 | None:intergenic |
TATGAGTTGAGAGAGTTATA+TGG | 0.348028 | 8:-79972571 | MsG0880046923.01.T01:CDS |
TTGAGAGAGTTATATGGAAT+TGG | 0.359843 | 8:-79972565 | MsG0880046923.01.T01:CDS |
TTCCCATTCCAGAAAGGAAT+TGG | 0.365027 | 8:-79972864 | MsG0880046923.01.T01:CDS |
ACATTGATGTTCTTCTTCTC+TGG | 0.372529 | 8:+79972929 | None:intergenic |
CTTTCCAGGTTAAAGTAGTT+AGG | 0.390941 | 8:-79972621 | MsG0880046923.01.T01:CDS |
AAGTAGTTAGGCAAATTCTA+TGG | 0.391893 | 8:-79972609 | MsG0880046923.01.T01:CDS |
AGGCTGAGGCAGCATGGAAT+TGG | 0.393269 | 8:+79973895 | None:intergenic |
GCAGTTTCATGGCCAGTGTA+TGG | 0.399077 | 8:+79973797 | None:intergenic |
TATTGATGAGGAGGAGGAGG+AGG | 0.402113 | 8:+79973944 | None:intergenic |
CCTCATCAATATTACTCAAA+TGG | 0.417683 | 8:-79973932 | MsG0880046923.01.T01:CDS |
CAAGTGGTGATCGGGATTGT+TGG | 0.421147 | 8:+79973715 | None:intergenic |
TGGCCAATTCCTTTCTGGAA+TGG | 0.423982 | 8:+79972861 | None:intergenic |
TAATATTGATGAGGAGGAGG+AGG | 0.424593 | 8:+79973941 | None:intergenic |
TCTTATTCATCTTGGATTCA+GGG | 0.429217 | 8:+79972202 | None:intergenic |
GGTAAGACAGCAGTATCCTT+TGG | 0.432308 | 8:+79972475 | None:intergenic |
ATGCGCTGAATCAACGCCTT+TGG | 0.436735 | 8:-79972737 | MsG0880046923.01.T01:CDS |
AAGTGGTGATCGGGATTGTT+GGG | 0.440633 | 8:+79973716 | None:intergenic |
CGTGATCGGCTCAAATGCTT+CGG | 0.440976 | 8:+79972887 | None:intergenic |
GATCGGGATTGTTGGGATCC+TGG | 0.442655 | 8:+79973723 | None:intergenic |
GAGTAATATTGATGAGGAGG+AGG | 0.449781 | 8:+79973938 | None:intergenic |
CCTTGAGGAGGCTGTGGCTG+TGG | 0.452037 | 8:+79973977 | None:intergenic |
GTGATCGGCTCAAATGCTTC+GGG | 0.457608 | 8:+79972888 | None:intergenic |
AAGGAAATCAAGTGGTGATC+GGG | 0.459517 | 8:+79973707 | None:intergenic |
TCGATGCCCTCTATCCTGGC+AGG | 0.463596 | 8:-79973679 | MsG0880046923.01.T01:intron |
GAATCATTACGATCGAAATC+AGG | 0.471263 | 8:+79972529 | None:intergenic |
GCGAGTGTGCAAAAGCTTTG+CGG | 0.476383 | 8:-79972316 | MsG0880046923.01.T01:CDS |
CCAGTGTATGGAGGTGGTGG+TGG | 0.478271 | 8:+79973809 | None:intergenic |
AGACGAACCTGCCAGGATAG+AGG | 0.481223 | 8:+79973672 | None:intergenic |
TCAAATGCTTCGGGAAATAG+AGG | 0.481528 | 8:+79972897 | None:intergenic |
CTATCAGTTGCTCAATTGGT+TGG | 0.489453 | 8:+79972264 | None:intergenic |
TTCTGGAATGGGAACGTGAT+CGG | 0.491433 | 8:+79972873 | None:intergenic |
TGGCCATGAAACTGCAAAGA+AGG | 0.508084 | 8:-79973789 | MsG0880046923.01.T01:CDS |
CTAACTACTTTAACCTGGAA+AGG | 0.508943 | 8:+79972622 | None:intergenic |
TGGCCAGTGTATGGAGGTGG+TGG | 0.511527 | 8:+79973806 | None:intergenic |
GTATTTGTTGTTGCATAGAA+AGG | 0.515068 | 8:+79973866 | None:intergenic |
TCAGGGTAAAATGATGTCAT+TGG | 0.515723 | 8:+79972219 | None:intergenic |
CTTGAGTTATTTGCATGTGA+GGG | 0.517477 | 8:+79972674 | None:intergenic |
AAAGGAAATCAAGTGGTGAT+CGG | 0.518189 | 8:+79973706 | None:intergenic |
CTTGAACAACATCTACATCA+AGG | 0.523064 | 8:+79973837 | None:intergenic |
CGTTGATAGACGAACCTGCC+AGG | 0.527320 | 8:+79973665 | None:intergenic |
TCAGTTGCTCAATTGGTTGG+CGG | 0.527891 | 8:+79972267 | None:intergenic |
TGAGGCAGCATGGAATTGGC+AGG | 0.530979 | 8:+79973899 | None:intergenic |
ATGAAACTGCAAAGAAGGTA+AGG | 0.531866 | 8:-79973784 | MsG0880046923.01.T01:CDS |
CCTGTACAATATAAATGAGC+AGG | 0.534383 | 8:+79972061 | None:intergenic |
TTTGCCTAACTACTTTAACC+TGG | 0.535215 | 8:+79972617 | None:intergenic |
GTGAGGGGATGCATCTACTA+AGG | 0.540789 | 8:+79972690 | None:intergenic |
ACACACTCTTCAGCTTTACC+AGG | 0.545945 | 8:-79973741 | MsG0880046923.01.T01:CDS |
TGTCTTACCTTGCCGACACA+TGG | 0.547747 | 8:-79972461 | MsG0880046923.01.T01:intron |
TTGTTGTTGCATAGAAAGGA+TGG | 0.551355 | 8:+79973870 | None:intergenic |
AAGTAACCTTGAGGAGGCTG+TGG | 0.554211 | 8:+79973971 | None:intergenic |
AATATAAAATAGATTCTATG+TGG | 0.558258 | 8:-79972107 | MsG0880046923.01.T01:three_prime_UTR |
CGATCGTAATGATTCTGGAA+AGG | 0.561139 | 8:-79972521 | MsG0880046923.01.T01:CDS |
TTGATTCAGCGCATATTACG+AGG | 0.561322 | 8:+79972746 | None:intergenic |
TAGAAAGGATGGTGAGGCTG+AGG | 0.562286 | 8:+79973881 | None:intergenic |
GCTTGAGTTATTTGCATGTG+AGG | 0.564572 | 8:+79972673 | None:intergenic |
TTTGAGTAATATTGATGAGG+AGG | 0.568153 | 8:+79973935 | None:intergenic |
GAGAAGAAGAACATCAATGT+AGG | 0.568366 | 8:-79972926 | MsG0880046923.01.T01:CDS |
TCATGGCCAGTGTATGGAGG+TGG | 0.578139 | 8:+79973803 | None:intergenic |
ATCACGTTCCCATTCCAGAA+AGG | 0.578262 | 8:-79972870 | MsG0880046923.01.T01:CDS |
GACGAACCTGCCAGGATAGA+GGG | 0.579142 | 8:+79973673 | None:intergenic |
TTGAACAACATCTACATCAA+GGG | 0.605831 | 8:+79973838 | None:intergenic |
CCACAGCCACAGCCTCCTCA+AGG | 0.607092 | 8:-79973977 | MsG0880046923.01.T01:CDS |
ATGGTGAGGCTGAGGCAGCA+TGG | 0.607957 | 8:+79973889 | None:intergenic |
AAGTCAATACCTGTTCCTGA+TGG | 0.616490 | 8:+79972825 | None:intergenic |
CCATTTGAGTAATATTGATG+AGG | 0.618222 | 8:+79973932 | None:intergenic |
AATGATACCATGTGTCGGCA+AGG | 0.619576 | 8:+79972454 | None:intergenic |
GCATCTACTAAGGAACTGAC+AGG | 0.623246 | 8:+79972700 | None:intergenic |
TGAACAACATCTACATCAAG+GGG | 0.637717 | 8:+79973839 | None:intergenic |
CCACCACCACCTCCATACAC+TGG | 0.639768 | 8:-79973809 | MsG0880046923.01.T01:CDS |
TTGAGTTATTTGCATGTGAG+GGG | 0.641986 | 8:+79972675 | None:intergenic |
CGAAAACAAAGGAAATCAAG+TGG | 0.643884 | 8:+79973699 | None:intergenic |
GTTTCATGGCCAGTGTATGG+AGG | 0.646913 | 8:+79973800 | None:intergenic |
CTAGTAATGATACCATGTGT+CGG | 0.651467 | 8:+79972449 | None:intergenic |
GGAGGGAAGTAACCTTGAGG+AGG | 0.654039 | 8:+79973965 | None:intergenic |
AATATGCATGACAGAACCAA+AGG | 0.654188 | 8:-79972491 | MsG0880046923.01.T01:CDS |
TGATTCAGCGCATATTACGA+GGG | 0.654776 | 8:+79972747 | None:intergenic |
GGAGTATCATGATCTTCCAA+AGG | 0.657082 | 8:+79972721 | None:intergenic |
GATTCAGCGCATATTACGAG+GGG | 0.658579 | 8:+79972748 | None:intergenic |
GGCAGCATGGAATTGGCAGG+TGG | 0.670295 | 8:+79973902 | None:intergenic |
ATAGAGGGCATCGAAAACAA+AGG | 0.673912 | 8:+79973688 | None:intergenic |
GGAGGAGGGAAGTAACCTTG+AGG | 0.702725 | 8:+79973962 | None:intergenic |
GTTGCATAGAAAGGATGGTG+AGG | 0.726545 | 8:+79973875 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATGTTTATCTTAATTAAAA+GGG | - | Chr8:79972533-79972552 | MsG0880046923.01.T01:CDS | 10.0% |
!! | TTATGTTTATCTTAATTAAA+AGG | - | Chr8:79972532-79972551 | MsG0880046923.01.T01:CDS | 10.0% |
!! | AATATAAAATAGATTCTATG+TGG | - | Chr8:79973941-79973960 | MsG0880046923.01.T01:CDS | 15.0% |
!! | TGCTTTCAAATAAATAAAAA+CGG | + | Chr8:79972698-79972717 | None:intergenic | 15.0% |
!! | AAATAATCAAAATAGTGAAG+TGG | + | Chr8:79973675-79973694 | None:intergenic | 20.0% |
!! | ATCATTCAATTGTTTAATTG+TGG | + | Chr8:79972830-79972849 | None:intergenic | 20.0% |
!! | TTAAAACCACAACAATTAAA+TGG | - | Chr8:79972767-79972786 | MsG0880046923.01.T01:intron | 20.0% |
! | AATCATGTTCTTATTCATCT+TGG | + | Chr8:79973857-79973876 | None:intergenic | 25.0% |
! | ATCATTACTAGTTGTTTGTT+TGG | - | Chr8:79973611-79973630 | MsG0880046923.01.T01:intron | 25.0% |
! | TGCTACTACTTTCAATTATT+CGG | - | Chr8:79972940-79972959 | MsG0880046923.01.T01:CDS | 25.0% |
! | TTACTGAATATTCAATTGAC+AGG | + | Chr8:79972590-79972609 | None:intergenic | 25.0% |
! | TTCTGGTCATTACAAATAAA+AGG | + | Chr8:79973081-79973100 | None:intergenic | 25.0% |
AAGTAGTTAGGCAAATTCTA+TGG | - | Chr8:79973439-79973458 | MsG0880046923.01.T01:intron | 30.0% | |
AATCAAAATAGTGAAGTGGA+TGG | + | Chr8:79973671-79973690 | None:intergenic | 30.0% | |
ATAACCTAATTACTACGCAA+TGG | + | Chr8:79972508-79972527 | None:intergenic | 30.0% | |
CCATTTGAGTAATATTGATG+AGG | + | Chr8:79972119-79972138 | None:intergenic | 30.0% | |
CCTCATCAATATTACTCAAA+TGG | - | Chr8:79972116-79972135 | MsG0880046923.01.T01:three_prime_UTR | 30.0% | |
GAATATTCAATTGACAGGTA+AGG | + | Chr8:79972585-79972604 | None:intergenic | 30.0% | |
GTCTAACCATTTAATTGTTG+TGG | + | Chr8:79972776-79972795 | None:intergenic | 30.0% | |
TAAGTAGAAGATCGTAATTC+TGG | + | Chr8:79973098-79973117 | None:intergenic | 30.0% | |
TCTTATTCATCTTGGATTCA+GGG | + | Chr8:79973849-79973868 | None:intergenic | 30.0% | |
TGACTTAGGTTTCTTTGATT+TGG | - | Chr8:79973240-79973259 | MsG0880046923.01.T01:intron | 30.0% | |
TGCAGTAAGAAAAGTAGAAA+AGG | + | Chr8:79972409-79972428 | None:intergenic | 30.0% | |
TTCTTATTCATCTTGGATTC+AGG | + | Chr8:79973850-79973869 | None:intergenic | 30.0% | |
TTGAACAACATCTACATCAA+GGG | + | Chr8:79972213-79972232 | None:intergenic | 30.0% | |
TTGAGAGAGTTATATGGAAT+TGG | - | Chr8:79973483-79973502 | MsG0880046923.01.T01:intron | 30.0% | |
TTTGAGTAATATTGATGAGG+AGG | + | Chr8:79972116-79972135 | None:intergenic | 30.0% | |
! | AATTGAAGAGCATAAAGAGT+TGG | + | Chr8:79972645-79972664 | None:intergenic | 30.0% |
! | TACTTTTCTTACTGCATGTT+TGG | - | Chr8:79972413-79972432 | MsG0880046923.01.T01:intron | 30.0% |
! | TATGAGTTGAGAGAGTTATA+TGG | - | Chr8:79973477-79973496 | MsG0880046923.01.T01:intron | 30.0% |
!! | GTATTTGTTGTTGCATAGAA+AGG | + | Chr8:79972185-79972204 | None:intergenic | 30.0% |
AAAGGAAATCAAGTGGTGAT+CGG | + | Chr8:79972345-79972364 | None:intergenic | 35.0% | |
AATATGCATGACAGAACCAA+AGG | - | Chr8:79973557-79973576 | MsG0880046923.01.T01:intron | 35.0% | |
AATATGTCTTCTTCAGGTGA+AGG | + | Chr8:79973279-79973298 | None:intergenic | 35.0% | |
ACATAGCGTCACATTATTGA+AGG | - | Chr8:79972875-79972894 | MsG0880046923.01.T01:CDS | 35.0% | |
ACATTGATGTTCTTCTTCTC+TGG | + | Chr8:79973122-79973141 | None:intergenic | 35.0% | |
ATCTCTATCAGTTGCTCAAT+TGG | + | Chr8:79973791-79973810 | None:intergenic | 35.0% | |
ATGAAACTGCAAAGAAGGTA+AGG | - | Chr8:79972264-79972283 | MsG0880046923.01.T01:CDS | 35.0% | |
ATTGCAATATATCCATCCAC+AGG | + | Chr8:79972560-79972579 | None:intergenic | 35.0% | |
CGAAAACAAAGGAAATCAAG+TGG | + | Chr8:79972352-79972371 | None:intergenic | 35.0% | |
CTAACTACTTTAACCTGGAA+AGG | + | Chr8:79973429-79973448 | None:intergenic | 35.0% | |
CTAGTAATGATACCATGTGT+CGG | + | Chr8:79973602-79973621 | None:intergenic | 35.0% | |
CTTGAACAACATCTACATCA+AGG | + | Chr8:79972214-79972233 | None:intergenic | 35.0% | |
CTTGAGTTATTTGCATGTGA+GGG | + | Chr8:79973377-79973396 | None:intergenic | 35.0% | |
CTTTCCAGGTTAAAGTAGTT+AGG | - | Chr8:79973427-79973446 | MsG0880046923.01.T01:intron | 35.0% | |
GAATCATTACGATCGAAATC+AGG | + | Chr8:79973522-79973541 | None:intergenic | 35.0% | |
GAGAAGAAGAACATCAATGT+AGG | - | Chr8:79973122-79973141 | MsG0880046923.01.T01:intron | 35.0% | |
GATTTCGATCGTAATGATTC+TGG | - | Chr8:79973522-79973541 | MsG0880046923.01.T01:intron | 35.0% | |
TCAGGGTAAAATGATGTCAT+TGG | + | Chr8:79973832-79973851 | None:intergenic | 35.0% | |
TGAACAACATCTACATCAAG+GGG | + | Chr8:79972212-79972231 | None:intergenic | 35.0% | |
TTACCTTCTTTGCAGTTTCA+TGG | + | Chr8:79972265-79972284 | None:intergenic | 35.0% | |
TTACTGCATGTTTGGTATCA+CGG | - | Chr8:79972421-79972440 | MsG0880046923.01.T01:intron | 35.0% | |
TTCACCATTGCGTAGTAATT+AGG | - | Chr8:79972501-79972520 | MsG0880046923.01.T01:CDS | 35.0% | |
TTGAGTTATTTGCATGTGAG+GGG | + | Chr8:79973376-79973395 | None:intergenic | 35.0% | |
TTGCAATATATCCATCCACA+GGG | + | Chr8:79972559-79972578 | None:intergenic | 35.0% | |
TTTGCCTAACTACTTTAACC+TGG | + | Chr8:79973434-79973453 | None:intergenic | 35.0% | |
! | GCAAATAACTCAAGCTGTTT+TGG | - | Chr8:79973383-79973402 | MsG0880046923.01.T01:intron | 35.0% |
! | TTGTTGTTGCATAGAAAGGA+TGG | + | Chr8:79972181-79972200 | None:intergenic | 35.0% |
AAGGAAATCAAGTGGTGATC+GGG | + | Chr8:79972344-79972363 | None:intergenic | 40.0% | |
AAGTCAATACCTGTTCCTGA+TGG | + | Chr8:79973226-79973245 | None:intergenic | 40.0% | |
AGGGGAAATATGTCTTCTTC+AGG | + | Chr8:79973285-79973304 | None:intergenic | 40.0% | |
CTATCAGTTGCTCAATTGGT+TGG | + | Chr8:79973787-79973806 | None:intergenic | 40.0% | |
CTGATGGCTGACAAAATTTC+TGG | + | Chr8:79973210-79973229 | None:intergenic | 40.0% | |
GAGTAATATTGATGAGGAGG+AGG | + | Chr8:79972113-79972132 | None:intergenic | 40.0% | |
GCTTGAGTTATTTGCATGTG+AGG | + | Chr8:79973378-79973397 | None:intergenic | 40.0% | |
TAATATTGATGAGGAGGAGG+AGG | + | Chr8:79972110-79972129 | None:intergenic | 40.0% | |
TCAAATGCTTCGGGAAATAG+AGG | + | Chr8:79973154-79973173 | None:intergenic | 40.0% | |
TCTTAATTAAAAGGGCCCTG+TGG | - | Chr8:79972541-79972560 | MsG0880046923.01.T01:CDS | 40.0% | |
TGATTCAGCGCATATTACGA+GGG | + | Chr8:79973304-79973323 | None:intergenic | 40.0% | |
TGTGTTCTGTGTATGACATG+TGG | - | Chr8:79972898-79972917 | MsG0880046923.01.T01:CDS | 40.0% | |
TTCCCATTCCAGAAAGGAAT+TGG | - | Chr8:79973184-79973203 | MsG0880046923.01.T01:intron | 40.0% | |
TTGAAAGTAGTAGCATGTGC+CGG | + | Chr8:79972935-79972954 | None:intergenic | 40.0% | |
TTGATTCAGCGCATATTACG+AGG | + | Chr8:79973305-79973324 | None:intergenic | 40.0% | |
TTGGAGAAAAACAGTGACAC+TGG | - | Chr8:79973402-79973421 | MsG0880046923.01.T01:intron | 40.0% | |
! | CAGAAATTTTGTCAGCCATC+AGG | - | Chr8:79973208-79973227 | MsG0880046923.01.T01:intron | 40.0% |
! | CGATCGTAATGATTCTGGAA+AGG | - | Chr8:79973527-79973546 | MsG0880046923.01.T01:intron | 40.0% |
! | GGAGTATCATGATCTTCCAA+AGG | + | Chr8:79973330-79973349 | None:intergenic | 40.0% |
! | TCTGAGACAGTGTTCATTGA+TGG | - | Chr8:79973018-79973037 | MsG0880046923.01.T01:intron | 40.0% |
!! | ATAGAGGGCATCGAAAACAA+AGG | + | Chr8:79972363-79972382 | None:intergenic | 40.0% |
!! | ATTTCTGGCCAATTCCTTTC+TGG | + | Chr8:79973195-79973214 | None:intergenic | 40.0% |
!! | TCAGGAACAGGTATTGACTT+AGG | - | Chr8:79973226-79973245 | MsG0880046923.01.T01:intron | 40.0% |
AAGTGGTGATCGGGATTGTT+GGG | + | Chr8:79972335-79972354 | None:intergenic | 45.0% | |
AATTAAAAGGGCCCTGTGGA+TGG | - | Chr8:79972545-79972564 | MsG0880046923.01.T01:CDS | 45.0% | |
ACACACTCTTCAGCTTTACC+AGG | - | Chr8:79972307-79972326 | MsG0880046923.01.T01:CDS | 45.0% | |
ATCACGTTCCCATTCCAGAA+AGG | - | Chr8:79973178-79973197 | MsG0880046923.01.T01:intron | 45.0% | |
CAATTGGTTGGCGGCATATA+GGG | + | Chr8:79973775-79973794 | None:intergenic | 45.0% | |
GATTCAGCGCATATTACGAG+GGG | + | Chr8:79973303-79973322 | None:intergenic | 45.0% | |
GCATCTACTAAGGAACTGAC+AGG | + | Chr8:79973351-79973370 | None:intergenic | 45.0% | |
GGTAAGACAGCAGTATCCTT+TGG | + | Chr8:79973576-79973595 | None:intergenic | 45.0% | |
GTTGCATAGAAAGGATGGTG+AGG | + | Chr8:79972176-79972195 | None:intergenic | 45.0% | |
TCAATTGGTTGGCGGCATAT+AGG | + | Chr8:79973776-79973795 | None:intergenic | 45.0% | |
TCAGTTGCTCAATTGGTTGG+CGG | + | Chr8:79973784-79973803 | None:intergenic | 45.0% | |
TGGCCATGAAACTGCAAAGA+AGG | - | Chr8:79972259-79972278 | MsG0880046923.01.T01:CDS | 45.0% | |
! | AATGATACCATGTGTCGGCA+AGG | + | Chr8:79973597-79973616 | None:intergenic | 45.0% |
! | TGGCCAATTCCTTTCTGGAA+TGG | + | Chr8:79973190-79973209 | None:intergenic | 45.0% |
! | TTTTGTCAGCCATCAGGAAC+AGG | - | Chr8:79973214-79973233 | MsG0880046923.01.T01:intron | 45.0% |
!! | GGCCAATTCCTTTCTGGAAT+GGG | + | Chr8:79973189-79973208 | None:intergenic | 45.0% |
!! | TTCTGGAATGGGAACGTGAT+CGG | + | Chr8:79973178-79973197 | None:intergenic | 45.0% |
AAGTAACCTTGAGGAGGCTG+TGG | + | Chr8:79972080-79972099 | None:intergenic | 50.0% | |
ATGCGCTGAATCAACGCCTT+TGG | - | Chr8:79973311-79973330 | MsG0880046923.01.T01:intron | 50.0% | |
CAAGTGGTGATCGGGATTGT+TGG | + | Chr8:79972336-79972355 | None:intergenic | 50.0% | |
CGAGTGTGCAAAAGCTTTGC+GGG | - | Chr8:79973733-79973752 | MsG0880046923.01.T01:CDS | 50.0% | |
GCAGTTTCATGGCCAGTGTA+TGG | + | Chr8:79972254-79972273 | None:intergenic | 50.0% | |
GCGAGTGTGCAAAAGCTTTG+CGG | - | Chr8:79973732-79973751 | MsG0880046923.01.T01:CDS | 50.0% | |
GTGAGGGGATGCATCTACTA+AGG | + | Chr8:79973361-79973380 | None:intergenic | 50.0% | |
GTTTCATGGCCAGTGTATGG+AGG | + | Chr8:79972251-79972270 | None:intergenic | 50.0% | |
TAGAAAGGATGGTGAGGCTG+AGG | + | Chr8:79972170-79972189 | None:intergenic | 50.0% | |
TATTGATGAGGAGGAGGAGG+AGG | + | Chr8:79972107-79972126 | None:intergenic | 50.0% | |
TGTCTTACCTTGCCGACACA+TGG | - | Chr8:79973587-79973606 | MsG0880046923.01.T01:intron | 50.0% | |
! | CGTGATCGGCTCAAATGCTT+CGG | + | Chr8:79973164-79973183 | None:intergenic | 50.0% |
! | GTGATCGGCTCAAATGCTTC+GGG | + | Chr8:79973163-79973182 | None:intergenic | 50.0% |
! | GTTTTCGATGCCCTCTATCC+TGG | - | Chr8:79972365-79972384 | MsG0880046923.01.T01:intron | 50.0% |
!! | ACATGTGGTAGTGTCGACAC+CGG | - | Chr8:79972913-79972932 | MsG0880046923.01.T01:CDS | 50.0% |
AGACGAACCTGCCAGGATAG+AGG | + | Chr8:79972379-79972398 | None:intergenic | 55.0% | |
AGGCTGAGGCAGCATGGAAT+TGG | + | Chr8:79972156-79972175 | None:intergenic | 55.0% | |
CAGTGACACTGGTCCTTTCC+AGG | - | Chr8:79973413-79973432 | MsG0880046923.01.T01:intron | 55.0% | |
GACGAACCTGCCAGGATAGA+GGG | + | Chr8:79972378-79972397 | None:intergenic | 55.0% | |
GATCGGGATTGTTGGGATCC+TGG | + | Chr8:79972328-79972347 | None:intergenic | 55.0% | |
GGAGGAGGGAAGTAACCTTG+AGG | + | Chr8:79972089-79972108 | None:intergenic | 55.0% | |
GGAGGGAAGTAACCTTGAGG+AGG | + | Chr8:79972086-79972105 | None:intergenic | 55.0% | |
TCATGGCCAGTGTATGGAGG+TGG | + | Chr8:79972248-79972267 | None:intergenic | 55.0% | |
TGAGGCAGCATGGAATTGGC+AGG | + | Chr8:79972152-79972171 | None:intergenic | 55.0% | |
! | CGTTGATAGACGAACCTGCC+AGG | + | Chr8:79972386-79972405 | None:intergenic | 55.0% |
ATGGTGAGGCTGAGGCAGCA+TGG | + | Chr8:79972162-79972181 | None:intergenic | 60.0% | |
CCACCACCACCTCCATACAC+TGG | - | Chr8:79972239-79972258 | MsG0880046923.01.T01:CDS | 60.0% | |
GATGAGGAGGAGGAGGAGGA+GGG | + | Chr8:79972103-79972122 | None:intergenic | 60.0% | |
GGCAGCATGGAATTGGCAGG+TGG | + | Chr8:79972149-79972168 | None:intergenic | 60.0% | |
TCGATGCCCTCTATCCTGGC+AGG | - | Chr8:79972369-79972388 | MsG0880046923.01.T01:intron | 60.0% | |
TGATGAGGAGGAGGAGGAGG+AGG | + | Chr8:79972104-79972123 | None:intergenic | 60.0% | |
TGGCCAGTGTATGGAGGTGG+TGG | + | Chr8:79972245-79972264 | None:intergenic | 60.0% | |
! | CCAGTGTATGGAGGTGGTGG+TGG | + | Chr8:79972242-79972261 | None:intergenic | 60.0% |
CCACAGCCACAGCCTCCTCA+AGG | - | Chr8:79972071-79972090 | MsG0880046923.01.T01:three_prime_UTR | 65.0% | |
CCTTGAGGAGGCTGTGGCTG+TGG | + | Chr8:79972074-79972093 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 79972068 | 79974002 | 79972068 | ID=MsG0880046923.01;Name=MsG0880046923.01 |
Chr8 | mRNA | 79972068 | 79974002 | 79972068 | ID=MsG0880046923.01.T01;Parent=MsG0880046923.01;Name=MsG0880046923.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0.33|0.25|1|1|1|4|167|297 |
Chr8 | exon | 79972068 | 79972348 | 79972068 | ID=MsG0880046923.01.T01:exon:10199;Parent=MsG0880046923.01.T01 |
Chr8 | exon | 79972462 | 79972781 | 79972462 | ID=MsG0880046923.01.T01:exon:10198;Parent=MsG0880046923.01.T01 |
Chr8 | exon | 79972835 | 79972971 | 79972835 | ID=MsG0880046923.01.T01:exon:10197;Parent=MsG0880046923.01.T01 |
Chr8 | exon | 79973680 | 79974002 | 79973680 | ID=MsG0880046923.01.T01:exon:10196;Parent=MsG0880046923.01.T01 |
Chr8 | CDS | 79973680 | 79974002 | 79973680 | ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01 |
Chr8 | CDS | 79972835 | 79972971 | 79972835 | ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01 |
Chr8 | CDS | 79972462 | 79972781 | 79972462 | ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01 |
Chr8 | CDS | 79972235 | 79972348 | 79972235 | ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01 |
Chr8 | three_prime_UTR | 79972068 | 79972234 | 79972068 | ID=MsG0880046923.01.T01:three_prime_utr;Parent=MsG0880046923.01.T01 |
Gene Sequence |
Protein sequence |