AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046923.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046923.01.T01 MTR_4g117250 89.667 300 10 3 18 297 60 358 0.0 543
MsG0880046923.01.T01 MTR_2g022210 57.413 317 96 6 18 296 70 385 1.10e-115 338
MsG0880046923.01.T01 MTR_1g064680 44.170 283 130 6 33 293 67 343 4.29e-80 246
MsG0880046923.01.T01 MTR_7g101150 47.244 254 113 4 60 296 103 352 3.68e-79 244
MsG0880046923.01.T01 MTR_7g101150 49.367 237 109 4 60 296 103 328 1.01e-77 239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046923.01.T01 AT3G06140 56.126 253 86 5 63 297 112 357 4.79e-90 272
MsG0880046923.01.T01 AT5G19080 49.196 311 113 10 10 297 88 376 9.12e-89 270
MsG0880046923.01.T01 AT3G09770 46.718 259 111 5 57 293 117 370 4.09e-75 235
MsG0880046923.01.T01 AT5G03200 48.016 252 100 5 60 294 100 337 4.95e-75 233
MsG0880046923.01.T01 AT3G53410 39.803 304 140 7 12 297 20 298 8.95e-70 218
MsG0880046923.01.T01 AT3G09770 43.172 227 102 5 57 261 117 338 6.95e-55 181

Find 95 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGGCCAATTCCTTTC+TGG 0.102959 8:+79972856 None:intergenic
CTGATGGCTGACAAAATTTC+TGG 0.178200 8:+79972841 None:intergenic
TTCTTATTCATCTTGGATTC+AGG 0.179706 8:+79972201 None:intergenic
GCAAATAACTCAAGCTGTTT+TGG 0.219800 8:-79972665 MsG0880046923.01.T01:CDS
TTACCTTCTTTGCAGTTTCA+TGG 0.243842 8:+79973786 None:intergenic
GATTTCGATCGTAATGATTC+TGG 0.244457 8:-79972526 MsG0880046923.01.T01:CDS
CAATTGGTTGGCGGCATATA+GGG 0.281867 8:+79972276 None:intergenic
ATCTCTATCAGTTGCTCAAT+TGG 0.285101 8:+79972260 None:intergenic
CGAGTGTGCAAAAGCTTTGC+GGG 0.313846 8:-79972315 MsG0880046923.01.T01:CDS
TCAATTGGTTGGCGGCATAT+AGG 0.323799 8:+79972275 None:intergenic
AATCATGTTCTTATTCATCT+TGG 0.323829 8:+79972194 None:intergenic
CAGTGACACTGGTCCTTTCC+AGG 0.340830 8:-79972635 MsG0880046923.01.T01:CDS
GGCCAATTCCTTTCTGGAAT+GGG 0.342924 8:+79972862 None:intergenic
TATGAGTTGAGAGAGTTATA+TGG 0.348028 8:-79972571 MsG0880046923.01.T01:CDS
TTGAGAGAGTTATATGGAAT+TGG 0.359843 8:-79972565 MsG0880046923.01.T01:CDS
TTCCCATTCCAGAAAGGAAT+TGG 0.365027 8:-79972864 MsG0880046923.01.T01:CDS
ACATTGATGTTCTTCTTCTC+TGG 0.372529 8:+79972929 None:intergenic
CTTTCCAGGTTAAAGTAGTT+AGG 0.390941 8:-79972621 MsG0880046923.01.T01:CDS
AAGTAGTTAGGCAAATTCTA+TGG 0.391893 8:-79972609 MsG0880046923.01.T01:CDS
AGGCTGAGGCAGCATGGAAT+TGG 0.393269 8:+79973895 None:intergenic
GCAGTTTCATGGCCAGTGTA+TGG 0.399077 8:+79973797 None:intergenic
TATTGATGAGGAGGAGGAGG+AGG 0.402113 8:+79973944 None:intergenic
CCTCATCAATATTACTCAAA+TGG 0.417683 8:-79973932 MsG0880046923.01.T01:CDS
CAAGTGGTGATCGGGATTGT+TGG 0.421147 8:+79973715 None:intergenic
TGGCCAATTCCTTTCTGGAA+TGG 0.423982 8:+79972861 None:intergenic
TAATATTGATGAGGAGGAGG+AGG 0.424593 8:+79973941 None:intergenic
TCTTATTCATCTTGGATTCA+GGG 0.429217 8:+79972202 None:intergenic
GGTAAGACAGCAGTATCCTT+TGG 0.432308 8:+79972475 None:intergenic
ATGCGCTGAATCAACGCCTT+TGG 0.436735 8:-79972737 MsG0880046923.01.T01:CDS
AAGTGGTGATCGGGATTGTT+GGG 0.440633 8:+79973716 None:intergenic
CGTGATCGGCTCAAATGCTT+CGG 0.440976 8:+79972887 None:intergenic
GATCGGGATTGTTGGGATCC+TGG 0.442655 8:+79973723 None:intergenic
GAGTAATATTGATGAGGAGG+AGG 0.449781 8:+79973938 None:intergenic
CCTTGAGGAGGCTGTGGCTG+TGG 0.452037 8:+79973977 None:intergenic
GTGATCGGCTCAAATGCTTC+GGG 0.457608 8:+79972888 None:intergenic
AAGGAAATCAAGTGGTGATC+GGG 0.459517 8:+79973707 None:intergenic
TCGATGCCCTCTATCCTGGC+AGG 0.463596 8:-79973679 MsG0880046923.01.T01:intron
GAATCATTACGATCGAAATC+AGG 0.471263 8:+79972529 None:intergenic
GCGAGTGTGCAAAAGCTTTG+CGG 0.476383 8:-79972316 MsG0880046923.01.T01:CDS
CCAGTGTATGGAGGTGGTGG+TGG 0.478271 8:+79973809 None:intergenic
AGACGAACCTGCCAGGATAG+AGG 0.481223 8:+79973672 None:intergenic
TCAAATGCTTCGGGAAATAG+AGG 0.481528 8:+79972897 None:intergenic
CTATCAGTTGCTCAATTGGT+TGG 0.489453 8:+79972264 None:intergenic
TTCTGGAATGGGAACGTGAT+CGG 0.491433 8:+79972873 None:intergenic
TGGCCATGAAACTGCAAAGA+AGG 0.508084 8:-79973789 MsG0880046923.01.T01:CDS
CTAACTACTTTAACCTGGAA+AGG 0.508943 8:+79972622 None:intergenic
TGGCCAGTGTATGGAGGTGG+TGG 0.511527 8:+79973806 None:intergenic
GTATTTGTTGTTGCATAGAA+AGG 0.515068 8:+79973866 None:intergenic
TCAGGGTAAAATGATGTCAT+TGG 0.515723 8:+79972219 None:intergenic
CTTGAGTTATTTGCATGTGA+GGG 0.517477 8:+79972674 None:intergenic
AAAGGAAATCAAGTGGTGAT+CGG 0.518189 8:+79973706 None:intergenic
CTTGAACAACATCTACATCA+AGG 0.523064 8:+79973837 None:intergenic
CGTTGATAGACGAACCTGCC+AGG 0.527320 8:+79973665 None:intergenic
TCAGTTGCTCAATTGGTTGG+CGG 0.527891 8:+79972267 None:intergenic
TGAGGCAGCATGGAATTGGC+AGG 0.530979 8:+79973899 None:intergenic
ATGAAACTGCAAAGAAGGTA+AGG 0.531866 8:-79973784 MsG0880046923.01.T01:CDS
CCTGTACAATATAAATGAGC+AGG 0.534383 8:+79972061 None:intergenic
TTTGCCTAACTACTTTAACC+TGG 0.535215 8:+79972617 None:intergenic
GTGAGGGGATGCATCTACTA+AGG 0.540789 8:+79972690 None:intergenic
ACACACTCTTCAGCTTTACC+AGG 0.545945 8:-79973741 MsG0880046923.01.T01:CDS
TGTCTTACCTTGCCGACACA+TGG 0.547747 8:-79972461 MsG0880046923.01.T01:intron
TTGTTGTTGCATAGAAAGGA+TGG 0.551355 8:+79973870 None:intergenic
AAGTAACCTTGAGGAGGCTG+TGG 0.554211 8:+79973971 None:intergenic
AATATAAAATAGATTCTATG+TGG 0.558258 8:-79972107 MsG0880046923.01.T01:three_prime_UTR
CGATCGTAATGATTCTGGAA+AGG 0.561139 8:-79972521 MsG0880046923.01.T01:CDS
TTGATTCAGCGCATATTACG+AGG 0.561322 8:+79972746 None:intergenic
TAGAAAGGATGGTGAGGCTG+AGG 0.562286 8:+79973881 None:intergenic
GCTTGAGTTATTTGCATGTG+AGG 0.564572 8:+79972673 None:intergenic
TTTGAGTAATATTGATGAGG+AGG 0.568153 8:+79973935 None:intergenic
GAGAAGAAGAACATCAATGT+AGG 0.568366 8:-79972926 MsG0880046923.01.T01:CDS
TCATGGCCAGTGTATGGAGG+TGG 0.578139 8:+79973803 None:intergenic
ATCACGTTCCCATTCCAGAA+AGG 0.578262 8:-79972870 MsG0880046923.01.T01:CDS
GACGAACCTGCCAGGATAGA+GGG 0.579142 8:+79973673 None:intergenic
TTGAACAACATCTACATCAA+GGG 0.605831 8:+79973838 None:intergenic
CCACAGCCACAGCCTCCTCA+AGG 0.607092 8:-79973977 MsG0880046923.01.T01:CDS
ATGGTGAGGCTGAGGCAGCA+TGG 0.607957 8:+79973889 None:intergenic
AAGTCAATACCTGTTCCTGA+TGG 0.616490 8:+79972825 None:intergenic
CCATTTGAGTAATATTGATG+AGG 0.618222 8:+79973932 None:intergenic
AATGATACCATGTGTCGGCA+AGG 0.619576 8:+79972454 None:intergenic
GCATCTACTAAGGAACTGAC+AGG 0.623246 8:+79972700 None:intergenic
TGAACAACATCTACATCAAG+GGG 0.637717 8:+79973839 None:intergenic
CCACCACCACCTCCATACAC+TGG 0.639768 8:-79973809 MsG0880046923.01.T01:CDS
TTGAGTTATTTGCATGTGAG+GGG 0.641986 8:+79972675 None:intergenic
CGAAAACAAAGGAAATCAAG+TGG 0.643884 8:+79973699 None:intergenic
GTTTCATGGCCAGTGTATGG+AGG 0.646913 8:+79973800 None:intergenic
CTAGTAATGATACCATGTGT+CGG 0.651467 8:+79972449 None:intergenic
GGAGGGAAGTAACCTTGAGG+AGG 0.654039 8:+79973965 None:intergenic
AATATGCATGACAGAACCAA+AGG 0.654188 8:-79972491 MsG0880046923.01.T01:CDS
TGATTCAGCGCATATTACGA+GGG 0.654776 8:+79972747 None:intergenic
GGAGTATCATGATCTTCCAA+AGG 0.657082 8:+79972721 None:intergenic
GATTCAGCGCATATTACGAG+GGG 0.658579 8:+79972748 None:intergenic
GGCAGCATGGAATTGGCAGG+TGG 0.670295 8:+79973902 None:intergenic
ATAGAGGGCATCGAAAACAA+AGG 0.673912 8:+79973688 None:intergenic
GGAGGAGGGAAGTAACCTTG+AGG 0.702725 8:+79973962 None:intergenic
GTTGCATAGAAAGGATGGTG+AGG 0.726545 8:+79973875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTTATCTTAATTAAAA+GGG - Chr8:79972533-79972552 MsG0880046923.01.T01:CDS 10.0%
!! TTATGTTTATCTTAATTAAA+AGG - Chr8:79972532-79972551 MsG0880046923.01.T01:CDS 10.0%
!! AATATAAAATAGATTCTATG+TGG - Chr8:79973941-79973960 MsG0880046923.01.T01:CDS 15.0%
!! TGCTTTCAAATAAATAAAAA+CGG + Chr8:79972698-79972717 None:intergenic 15.0%
!! AAATAATCAAAATAGTGAAG+TGG + Chr8:79973675-79973694 None:intergenic 20.0%
!! ATCATTCAATTGTTTAATTG+TGG + Chr8:79972830-79972849 None:intergenic 20.0%
!! TTAAAACCACAACAATTAAA+TGG - Chr8:79972767-79972786 MsG0880046923.01.T01:intron 20.0%
! AATCATGTTCTTATTCATCT+TGG + Chr8:79973857-79973876 None:intergenic 25.0%
! ATCATTACTAGTTGTTTGTT+TGG - Chr8:79973611-79973630 MsG0880046923.01.T01:intron 25.0%
! TGCTACTACTTTCAATTATT+CGG - Chr8:79972940-79972959 MsG0880046923.01.T01:CDS 25.0%
! TTACTGAATATTCAATTGAC+AGG + Chr8:79972590-79972609 None:intergenic 25.0%
! TTCTGGTCATTACAAATAAA+AGG + Chr8:79973081-79973100 None:intergenic 25.0%
AAGTAGTTAGGCAAATTCTA+TGG - Chr8:79973439-79973458 MsG0880046923.01.T01:intron 30.0%
AATCAAAATAGTGAAGTGGA+TGG + Chr8:79973671-79973690 None:intergenic 30.0%
ATAACCTAATTACTACGCAA+TGG + Chr8:79972508-79972527 None:intergenic 30.0%
CCATTTGAGTAATATTGATG+AGG + Chr8:79972119-79972138 None:intergenic 30.0%
CCTCATCAATATTACTCAAA+TGG - Chr8:79972116-79972135 MsG0880046923.01.T01:three_prime_UTR 30.0%
GAATATTCAATTGACAGGTA+AGG + Chr8:79972585-79972604 None:intergenic 30.0%
GTCTAACCATTTAATTGTTG+TGG + Chr8:79972776-79972795 None:intergenic 30.0%
TAAGTAGAAGATCGTAATTC+TGG + Chr8:79973098-79973117 None:intergenic 30.0%
TCTTATTCATCTTGGATTCA+GGG + Chr8:79973849-79973868 None:intergenic 30.0%
TGACTTAGGTTTCTTTGATT+TGG - Chr8:79973240-79973259 MsG0880046923.01.T01:intron 30.0%
TGCAGTAAGAAAAGTAGAAA+AGG + Chr8:79972409-79972428 None:intergenic 30.0%
TTCTTATTCATCTTGGATTC+AGG + Chr8:79973850-79973869 None:intergenic 30.0%
TTGAACAACATCTACATCAA+GGG + Chr8:79972213-79972232 None:intergenic 30.0%
TTGAGAGAGTTATATGGAAT+TGG - Chr8:79973483-79973502 MsG0880046923.01.T01:intron 30.0%
TTTGAGTAATATTGATGAGG+AGG + Chr8:79972116-79972135 None:intergenic 30.0%
! AATTGAAGAGCATAAAGAGT+TGG + Chr8:79972645-79972664 None:intergenic 30.0%
! TACTTTTCTTACTGCATGTT+TGG - Chr8:79972413-79972432 MsG0880046923.01.T01:intron 30.0%
! TATGAGTTGAGAGAGTTATA+TGG - Chr8:79973477-79973496 MsG0880046923.01.T01:intron 30.0%
!! GTATTTGTTGTTGCATAGAA+AGG + Chr8:79972185-79972204 None:intergenic 30.0%
AAAGGAAATCAAGTGGTGAT+CGG + Chr8:79972345-79972364 None:intergenic 35.0%
AATATGCATGACAGAACCAA+AGG - Chr8:79973557-79973576 MsG0880046923.01.T01:intron 35.0%
AATATGTCTTCTTCAGGTGA+AGG + Chr8:79973279-79973298 None:intergenic 35.0%
ACATAGCGTCACATTATTGA+AGG - Chr8:79972875-79972894 MsG0880046923.01.T01:CDS 35.0%
ACATTGATGTTCTTCTTCTC+TGG + Chr8:79973122-79973141 None:intergenic 35.0%
ATCTCTATCAGTTGCTCAAT+TGG + Chr8:79973791-79973810 None:intergenic 35.0%
ATGAAACTGCAAAGAAGGTA+AGG - Chr8:79972264-79972283 MsG0880046923.01.T01:CDS 35.0%
ATTGCAATATATCCATCCAC+AGG + Chr8:79972560-79972579 None:intergenic 35.0%
CGAAAACAAAGGAAATCAAG+TGG + Chr8:79972352-79972371 None:intergenic 35.0%
CTAACTACTTTAACCTGGAA+AGG + Chr8:79973429-79973448 None:intergenic 35.0%
CTAGTAATGATACCATGTGT+CGG + Chr8:79973602-79973621 None:intergenic 35.0%
CTTGAACAACATCTACATCA+AGG + Chr8:79972214-79972233 None:intergenic 35.0%
CTTGAGTTATTTGCATGTGA+GGG + Chr8:79973377-79973396 None:intergenic 35.0%
CTTTCCAGGTTAAAGTAGTT+AGG - Chr8:79973427-79973446 MsG0880046923.01.T01:intron 35.0%
GAATCATTACGATCGAAATC+AGG + Chr8:79973522-79973541 None:intergenic 35.0%
GAGAAGAAGAACATCAATGT+AGG - Chr8:79973122-79973141 MsG0880046923.01.T01:intron 35.0%
GATTTCGATCGTAATGATTC+TGG - Chr8:79973522-79973541 MsG0880046923.01.T01:intron 35.0%
TCAGGGTAAAATGATGTCAT+TGG + Chr8:79973832-79973851 None:intergenic 35.0%
TGAACAACATCTACATCAAG+GGG + Chr8:79972212-79972231 None:intergenic 35.0%
TTACCTTCTTTGCAGTTTCA+TGG + Chr8:79972265-79972284 None:intergenic 35.0%
TTACTGCATGTTTGGTATCA+CGG - Chr8:79972421-79972440 MsG0880046923.01.T01:intron 35.0%
TTCACCATTGCGTAGTAATT+AGG - Chr8:79972501-79972520 MsG0880046923.01.T01:CDS 35.0%
TTGAGTTATTTGCATGTGAG+GGG + Chr8:79973376-79973395 None:intergenic 35.0%
TTGCAATATATCCATCCACA+GGG + Chr8:79972559-79972578 None:intergenic 35.0%
TTTGCCTAACTACTTTAACC+TGG + Chr8:79973434-79973453 None:intergenic 35.0%
! GCAAATAACTCAAGCTGTTT+TGG - Chr8:79973383-79973402 MsG0880046923.01.T01:intron 35.0%
! TTGTTGTTGCATAGAAAGGA+TGG + Chr8:79972181-79972200 None:intergenic 35.0%
AAGGAAATCAAGTGGTGATC+GGG + Chr8:79972344-79972363 None:intergenic 40.0%
AAGTCAATACCTGTTCCTGA+TGG + Chr8:79973226-79973245 None:intergenic 40.0%
AGGGGAAATATGTCTTCTTC+AGG + Chr8:79973285-79973304 None:intergenic 40.0%
CTATCAGTTGCTCAATTGGT+TGG + Chr8:79973787-79973806 None:intergenic 40.0%
CTGATGGCTGACAAAATTTC+TGG + Chr8:79973210-79973229 None:intergenic 40.0%
GAGTAATATTGATGAGGAGG+AGG + Chr8:79972113-79972132 None:intergenic 40.0%
GCTTGAGTTATTTGCATGTG+AGG + Chr8:79973378-79973397 None:intergenic 40.0%
TAATATTGATGAGGAGGAGG+AGG + Chr8:79972110-79972129 None:intergenic 40.0%
TCAAATGCTTCGGGAAATAG+AGG + Chr8:79973154-79973173 None:intergenic 40.0%
TCTTAATTAAAAGGGCCCTG+TGG - Chr8:79972541-79972560 MsG0880046923.01.T01:CDS 40.0%
TGATTCAGCGCATATTACGA+GGG + Chr8:79973304-79973323 None:intergenic 40.0%
TGTGTTCTGTGTATGACATG+TGG - Chr8:79972898-79972917 MsG0880046923.01.T01:CDS 40.0%
TTCCCATTCCAGAAAGGAAT+TGG - Chr8:79973184-79973203 MsG0880046923.01.T01:intron 40.0%
TTGAAAGTAGTAGCATGTGC+CGG + Chr8:79972935-79972954 None:intergenic 40.0%
TTGATTCAGCGCATATTACG+AGG + Chr8:79973305-79973324 None:intergenic 40.0%
TTGGAGAAAAACAGTGACAC+TGG - Chr8:79973402-79973421 MsG0880046923.01.T01:intron 40.0%
! CAGAAATTTTGTCAGCCATC+AGG - Chr8:79973208-79973227 MsG0880046923.01.T01:intron 40.0%
! CGATCGTAATGATTCTGGAA+AGG - Chr8:79973527-79973546 MsG0880046923.01.T01:intron 40.0%
! GGAGTATCATGATCTTCCAA+AGG + Chr8:79973330-79973349 None:intergenic 40.0%
! TCTGAGACAGTGTTCATTGA+TGG - Chr8:79973018-79973037 MsG0880046923.01.T01:intron 40.0%
!! ATAGAGGGCATCGAAAACAA+AGG + Chr8:79972363-79972382 None:intergenic 40.0%
!! ATTTCTGGCCAATTCCTTTC+TGG + Chr8:79973195-79973214 None:intergenic 40.0%
!! TCAGGAACAGGTATTGACTT+AGG - Chr8:79973226-79973245 MsG0880046923.01.T01:intron 40.0%
AAGTGGTGATCGGGATTGTT+GGG + Chr8:79972335-79972354 None:intergenic 45.0%
AATTAAAAGGGCCCTGTGGA+TGG - Chr8:79972545-79972564 MsG0880046923.01.T01:CDS 45.0%
ACACACTCTTCAGCTTTACC+AGG - Chr8:79972307-79972326 MsG0880046923.01.T01:CDS 45.0%
ATCACGTTCCCATTCCAGAA+AGG - Chr8:79973178-79973197 MsG0880046923.01.T01:intron 45.0%
CAATTGGTTGGCGGCATATA+GGG + Chr8:79973775-79973794 None:intergenic 45.0%
GATTCAGCGCATATTACGAG+GGG + Chr8:79973303-79973322 None:intergenic 45.0%
GCATCTACTAAGGAACTGAC+AGG + Chr8:79973351-79973370 None:intergenic 45.0%
GGTAAGACAGCAGTATCCTT+TGG + Chr8:79973576-79973595 None:intergenic 45.0%
GTTGCATAGAAAGGATGGTG+AGG + Chr8:79972176-79972195 None:intergenic 45.0%
TCAATTGGTTGGCGGCATAT+AGG + Chr8:79973776-79973795 None:intergenic 45.0%
TCAGTTGCTCAATTGGTTGG+CGG + Chr8:79973784-79973803 None:intergenic 45.0%
TGGCCATGAAACTGCAAAGA+AGG - Chr8:79972259-79972278 MsG0880046923.01.T01:CDS 45.0%
! AATGATACCATGTGTCGGCA+AGG + Chr8:79973597-79973616 None:intergenic 45.0%
! TGGCCAATTCCTTTCTGGAA+TGG + Chr8:79973190-79973209 None:intergenic 45.0%
! TTTTGTCAGCCATCAGGAAC+AGG - Chr8:79973214-79973233 MsG0880046923.01.T01:intron 45.0%
!! GGCCAATTCCTTTCTGGAAT+GGG + Chr8:79973189-79973208 None:intergenic 45.0%
!! TTCTGGAATGGGAACGTGAT+CGG + Chr8:79973178-79973197 None:intergenic 45.0%
AAGTAACCTTGAGGAGGCTG+TGG + Chr8:79972080-79972099 None:intergenic 50.0%
ATGCGCTGAATCAACGCCTT+TGG - Chr8:79973311-79973330 MsG0880046923.01.T01:intron 50.0%
CAAGTGGTGATCGGGATTGT+TGG + Chr8:79972336-79972355 None:intergenic 50.0%
CGAGTGTGCAAAAGCTTTGC+GGG - Chr8:79973733-79973752 MsG0880046923.01.T01:CDS 50.0%
GCAGTTTCATGGCCAGTGTA+TGG + Chr8:79972254-79972273 None:intergenic 50.0%
GCGAGTGTGCAAAAGCTTTG+CGG - Chr8:79973732-79973751 MsG0880046923.01.T01:CDS 50.0%
GTGAGGGGATGCATCTACTA+AGG + Chr8:79973361-79973380 None:intergenic 50.0%
GTTTCATGGCCAGTGTATGG+AGG + Chr8:79972251-79972270 None:intergenic 50.0%
TAGAAAGGATGGTGAGGCTG+AGG + Chr8:79972170-79972189 None:intergenic 50.0%
TATTGATGAGGAGGAGGAGG+AGG + Chr8:79972107-79972126 None:intergenic 50.0%
TGTCTTACCTTGCCGACACA+TGG - Chr8:79973587-79973606 MsG0880046923.01.T01:intron 50.0%
! CGTGATCGGCTCAAATGCTT+CGG + Chr8:79973164-79973183 None:intergenic 50.0%
! GTGATCGGCTCAAATGCTTC+GGG + Chr8:79973163-79973182 None:intergenic 50.0%
! GTTTTCGATGCCCTCTATCC+TGG - Chr8:79972365-79972384 MsG0880046923.01.T01:intron 50.0%
!! ACATGTGGTAGTGTCGACAC+CGG - Chr8:79972913-79972932 MsG0880046923.01.T01:CDS 50.0%
AGACGAACCTGCCAGGATAG+AGG + Chr8:79972379-79972398 None:intergenic 55.0%
AGGCTGAGGCAGCATGGAAT+TGG + Chr8:79972156-79972175 None:intergenic 55.0%
CAGTGACACTGGTCCTTTCC+AGG - Chr8:79973413-79973432 MsG0880046923.01.T01:intron 55.0%
GACGAACCTGCCAGGATAGA+GGG + Chr8:79972378-79972397 None:intergenic 55.0%
GATCGGGATTGTTGGGATCC+TGG + Chr8:79972328-79972347 None:intergenic 55.0%
GGAGGAGGGAAGTAACCTTG+AGG + Chr8:79972089-79972108 None:intergenic 55.0%
GGAGGGAAGTAACCTTGAGG+AGG + Chr8:79972086-79972105 None:intergenic 55.0%
TCATGGCCAGTGTATGGAGG+TGG + Chr8:79972248-79972267 None:intergenic 55.0%
TGAGGCAGCATGGAATTGGC+AGG + Chr8:79972152-79972171 None:intergenic 55.0%
! CGTTGATAGACGAACCTGCC+AGG + Chr8:79972386-79972405 None:intergenic 55.0%
ATGGTGAGGCTGAGGCAGCA+TGG + Chr8:79972162-79972181 None:intergenic 60.0%
CCACCACCACCTCCATACAC+TGG - Chr8:79972239-79972258 MsG0880046923.01.T01:CDS 60.0%
GATGAGGAGGAGGAGGAGGA+GGG + Chr8:79972103-79972122 None:intergenic 60.0%
GGCAGCATGGAATTGGCAGG+TGG + Chr8:79972149-79972168 None:intergenic 60.0%
TCGATGCCCTCTATCCTGGC+AGG - Chr8:79972369-79972388 MsG0880046923.01.T01:intron 60.0%
TGATGAGGAGGAGGAGGAGG+AGG + Chr8:79972104-79972123 None:intergenic 60.0%
TGGCCAGTGTATGGAGGTGG+TGG + Chr8:79972245-79972264 None:intergenic 60.0%
! CCAGTGTATGGAGGTGGTGG+TGG + Chr8:79972242-79972261 None:intergenic 60.0%
CCACAGCCACAGCCTCCTCA+AGG - Chr8:79972071-79972090 MsG0880046923.01.T01:three_prime_UTR 65.0%
CCTTGAGGAGGCTGTGGCTG+TGG + Chr8:79972074-79972093 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 79972068 79974002 79972068 ID=MsG0880046923.01;Name=MsG0880046923.01
Chr8 mRNA 79972068 79974002 79972068 ID=MsG0880046923.01.T01;Parent=MsG0880046923.01;Name=MsG0880046923.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0.33|0.25|1|1|1|4|167|297
Chr8 exon 79972068 79972348 79972068 ID=MsG0880046923.01.T01:exon:10199;Parent=MsG0880046923.01.T01
Chr8 exon 79972462 79972781 79972462 ID=MsG0880046923.01.T01:exon:10198;Parent=MsG0880046923.01.T01
Chr8 exon 79972835 79972971 79972835 ID=MsG0880046923.01.T01:exon:10197;Parent=MsG0880046923.01.T01
Chr8 exon 79973680 79974002 79973680 ID=MsG0880046923.01.T01:exon:10196;Parent=MsG0880046923.01.T01
Chr8 CDS 79973680 79974002 79973680 ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01
Chr8 CDS 79972835 79972971 79972835 ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01
Chr8 CDS 79972462 79972781 79972462 ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01
Chr8 CDS 79972235 79972348 79972235 ID=MsG0880046923.01.T01:cds;Parent=MsG0880046923.01.T01
Chr8 three_prime_UTR 79972068 79972234 79972068 ID=MsG0880046923.01.T01:three_prime_utr;Parent=MsG0880046923.01.T01
Gene Sequence

>MsG0880046923.01.T01

ATGCCACAGCCACAGCCTCCTCAAGGTTACTTCCCTCCTCCTCCTCCTCCTCATCAATATTACTCAAATGGATACACTCCACCTGCCAATTCCATGCTGCCTCAGCCTCACCATCCTTTCTATGCAACAACAAATACTCAACCCCTTGATGTAGATGTTGTTCAAGCACTTCCACCACCACCTCCATACACTGGCCATGAAACTGCAAAGAAGGTAAGGAATGATGTGAACTTGCATAAACACACTCTTCAGCTTTACCAGGATCCCAACAATCCCGATCACCACTTGATTTCCTTTGTTTTCGATGCCCTCTATCCTGGCAGAATTACGATCTTCTACTTAGCCAGAGAAGAAGAACATCAATGTAGGTTTGTTCCTCTATTTCCCGAAGCATTTGAGCCGATCACGTTCCCATTCCAGAAAGGAATTGGCCAGAAATTTTGTCAGCCATCAGGAACAGAAGACATATTTCCCCTCGTAATATGCGCTGAATCAACGCCTTTGGAAGATCATGATACTCCTGTCAGTTCCTTAGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTTTTGGAGAAAAACAGTGACACTGGTCCTTTCCAGGTTAAAGTAGTTAGGCAAATTCTATGGATCGATCAAGTTCGTTATGAGTTGAGAGAGTTATATGGAATTGGTAACTCAACAGCACCTGATTTCGATCGTAATGATTCTGGAAAGGAGTGTGTAATATGCATGACAGAACCAAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGCGAGTGTGCAAAAGCTTTGCGGGTTCAATCAAACAATTGCCCTATATGCCGCCAACCAATTGAGCAACTGATAGAGATCAAGATAAACAATGATGACCAATGA

Protein sequence

>MsG0880046923.01.T01

MPQPQPPQGYFPPPPPPHQYYSNGYTPPANSMLPQPHHPFYATTNTQPLDVDVVQALPPPPPYTGHETAKKVRNDVNLHKHTLQLYQDPNNPDHHLISFVFDALYPGRITIFYLAREEEHQCRFVPLFPEAFEPITFPFQKGIGQKFCQPSGTEDIFPLVICAESTPLEDHDTPVSSLVDASPHMQITQAVLEKNSDTGPFQVKVVRQILWIDQVRYELRELYGIGNSTAPDFDRNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKALRVQSNNCPICRQPIEQLIEIKINNDDQ*