Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002364.01.T01 | XP_003588378.2 | 95.2 | 125 | 6 | 0 | 12 | 136 | 123 | 247 | 6.85E-80 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002364.01.T01 | O82316 | 81.967 | 122 | 22 | 0 | 13 | 134 | 124 | 245 | 2.08E-68 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002364.01.T01 | G7IB42 | 95.200 | 125 | 6 | 0 | 12 | 136 | 123 | 247 | 3.27e-80 | 246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0180002364.01 | 0.806881 | 6.632706e-50 | 3.641219e-47 |
| MsG0180000287.01 | MsG0180002364.01 | 0.821326 | 4.284298e-53 | 3.474758e-50 |
| MsG0180000870.01 | MsG0180002364.01 | 0.982736 | 7.266895e-156 | 2.176315e-149 |
| MsG0180002323.01 | MsG0180002364.01 | 0.870678 | 1.216920e-66 | 4.774606e-63 |
| MsG0180002364.01 | MsG0180003320.01 | 0.801280 | 9.699546e-49 | 4.613825e-46 |
| MsG0180002364.01 | MsG0280007922.01 | 0.829566 | 4.792920e-55 | 4.923510e-52 |
| MsG0180002364.01 | MsG0280011267.01 | 0.810274 | 1.250278e-50 | 7.503927e-48 |
| MsG0180002364.01 | MsG0380012889.01 | 0.804909 | 1.722263e-49 | 8.989645e-47 |
| MsG0180002364.01 | MsG0380012981.01 | 0.809071 | 2.268192e-50 | 1.318731e-47 |
| MsG0180002364.01 | MsG0380013285.01 | 0.801508 | 8.712859e-49 | 4.168300e-46 |
| MsG0180002364.01 | MsG0380015080.01 | 0.803642 | 3.162470e-49 | 1.597564e-46 |
| MsG0180002364.01 | MsG0380016476.01 | 0.800000 | 1.769381e-48 | 8.147517e-46 |
| MsG0180002364.01 | MsG0480019024.01 | 0.804442 | 2.155831e-49 | 1.111644e-46 |
| MsG0180002364.01 | MsG0480019666.01 | 0.802790 | 4.746875e-49 | 2.346278e-46 |
| MsG0180002364.01 | MsG0480020722.01 | 0.815654 | 8.275700e-52 | 5.739858e-49 |
| MsG0180002364.01 | MsG0480021133.01 | 0.803321 | 3.685544e-49 | 1.846466e-46 |
| MsG0180002364.01 | MsG0480021551.01 | 0.817353 | 3.446791e-52 | 2.504206e-49 |
| MsG0180002364.01 | MsG0480021573.01 | 0.803563 | 3.284596e-49 | 1.655994e-46 |
| MsG0180002364.01 | MsG0580025023.01 | 0.804255 | 2.357905e-49 | 1.209998e-46 |
| MsG0180002364.01 | MsG0580025961.01 | 0.809066 | 2.273977e-50 | 1.321912e-47 |
| MsG0180002364.01 | MsG0580029359.01 | 0.806289 | 8.841978e-50 | 4.781059e-47 |
| MsG0180002364.01 | MsG0680030960.01 | 0.836111 | 1.133345e-56 | 1.414307e-53 |
| MsG0180002364.01 | MsG0680033467.01 | 0.802180 | 6.340674e-49 | 3.085529e-46 |
| MsG0180002364.01 | MsG0680034974.01 | 0.805879 | 1.078676e-49 | 5.771887e-47 |
| MsG0180002364.01 | MsG0780038519.01 | 0.816771 | 4.656277e-52 | 3.329605e-49 |
| MsG0180002364.01 | MsG0780040498.01 | 0.811847 | 5.705438e-51 | 3.569981e-48 |
| MsG0180002364.01 | MsG0880046273.01 | 0.843716 | 1.180867e-58 | 1.863758e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002364.01.T01 | MTR_1g006590 | 95.200 | 125 | 6 | 0 | 12 | 136 | 123 | 247 | 8.30e-84 | 246 |
| MsG0180002364.01.T01 | MTR_1g006490 | 89.600 | 125 | 13 | 0 | 12 | 136 | 123 | 247 | 1.24e-77 | 230 |
| MsG0180002364.01.T01 | MTR_2g101370 | 56.296 | 135 | 55 | 1 | 2 | 132 | 114 | 248 | 2.81e-48 | 155 |
| MsG0180002364.01.T01 | MTR_8g013680 | 57.037 | 135 | 54 | 1 | 2 | 132 | 113 | 247 | 3.43e-48 | 155 |
| MsG0180002364.01.T01 | MTR_5g012810 | 55.645 | 124 | 54 | 1 | 10 | 133 | 124 | 246 | 1.51e-44 | 146 |
| MsG0180002364.01.T01 | MTR_4g063090 | 57.031 | 128 | 51 | 1 | 2 | 125 | 115 | 242 | 2.70e-44 | 145 |
| MsG0180002364.01.T01 | MTR_7g103030 | 59.167 | 120 | 49 | 0 | 10 | 129 | 126 | 245 | 1.50e-40 | 135 |
| MsG0180002364.01.T01 | MTR_1g115405 | 51.880 | 133 | 59 | 2 | 2 | 129 | 115 | 247 | 4.10e-40 | 135 |
| MsG0180002364.01.T01 | MTR_7g023350 | 53.383 | 133 | 57 | 2 | 2 | 129 | 115 | 247 | 4.38e-36 | 124 |
| MsG0180002364.01.T01 | MTR_6g069040 | 48.333 | 120 | 58 | 1 | 18 | 133 | 135 | 254 | 1.03e-35 | 123 |
| MsG0180002364.01.T01 | MTR_1g077540 | 47.500 | 120 | 56 | 1 | 21 | 133 | 138 | 257 | 3.32e-34 | 120 |
| MsG0180002364.01.T01 | MTR_2g060360 | 45.161 | 93 | 50 | 1 | 29 | 121 | 144 | 235 | 5.92e-23 | 90.5 |
| MsG0180002364.01.T01 | MTR_5g063930 | 41.441 | 111 | 60 | 3 | 26 | 136 | 155 | 260 | 2.44e-19 | 81.3 |
| MsG0180002364.01.T01 | MTR_2g094270 | 34.615 | 130 | 76 | 4 | 8 | 130 | 153 | 280 | 6.51e-17 | 75.1 |
| MsG0180002364.01.T01 | MTR_7g101190 | 39.130 | 115 | 61 | 4 | 16 | 123 | 159 | 271 | 1.95e-16 | 73.9 |
| MsG0180002364.01.T01 | MTR_3g008920 | 39.048 | 105 | 60 | 3 | 17 | 121 | 134 | 234 | 1.82e-15 | 70.9 |
| MsG0180002364.01.T01 | MTR_5g079570 | 35.780 | 109 | 67 | 2 | 26 | 134 | 156 | 261 | 2.17e-15 | 70.9 |
| MsG0180002364.01.T01 | MTR_4g059390 | 38.318 | 107 | 57 | 4 | 31 | 130 | 174 | 278 | 3.90e-15 | 70.5 |
| MsG0180002364.01.T01 | MTR_1g095070 | 37.500 | 120 | 66 | 4 | 18 | 130 | 95 | 212 | 1.27e-14 | 68.2 |
| MsG0180002364.01.T01 | MTR_2g017620 | 35.714 | 112 | 68 | 2 | 26 | 136 | 74 | 182 | 2.28e-14 | 66.6 |
| MsG0180002364.01.T01 | MTR_4g084880 | 39.423 | 104 | 59 | 2 | 26 | 129 | 154 | 253 | 4.82e-14 | 67.0 |
| MsG0180002364.01.T01 | MTR_2g017620 | 35.714 | 112 | 68 | 2 | 26 | 136 | 141 | 249 | 5.51e-14 | 67.0 |
| MsG0180002364.01.T01 | MTR_2g017620 | 35.714 | 112 | 68 | 2 | 26 | 136 | 155 | 263 | 7.27e-14 | 66.6 |
| MsG0180002364.01.T01 | MTR_2g017660 | 38.462 | 104 | 58 | 4 | 26 | 128 | 156 | 254 | 7.97e-14 | 66.6 |
| MsG0180002364.01.T01 | MTR_3g118010 | 36.449 | 107 | 59 | 4 | 31 | 130 | 166 | 270 | 1.07e-13 | 66.2 |
| MsG0180002364.01.T01 | MTR_4g415300 | 37.273 | 110 | 61 | 3 | 16 | 118 | 170 | 278 | 1.33e-13 | 66.2 |
| MsG0180002364.01.T01 | MTR_1g070385 | 37.000 | 100 | 58 | 3 | 23 | 121 | 175 | 270 | 1.35e-13 | 66.6 |
| MsG0180002364.01.T01 | MTR_2g017590 | 35.714 | 112 | 68 | 2 | 26 | 136 | 153 | 261 | 6.10e-13 | 64.3 |
| MsG0180002364.01.T01 | MTR_2g104940 | 40.000 | 95 | 52 | 3 | 17 | 110 | 188 | 278 | 9.34e-13 | 63.9 |
| MsG0180002364.01.T01 | MTR_1g097840 | 43.333 | 90 | 46 | 3 | 26 | 114 | 190 | 275 | 1.16e-12 | 63.5 |
| MsG0180002364.01.T01 | MTR_8g087720 | 35.577 | 104 | 63 | 2 | 26 | 129 | 155 | 254 | 1.41e-12 | 63.2 |
| MsG0180002364.01.T01 | MTR_4g006630 | 38.372 | 86 | 49 | 2 | 26 | 110 | 104 | 186 | 1.77e-12 | 62.4 |
| MsG0180002364.01.T01 | MTR_4g006730 | 38.372 | 86 | 49 | 2 | 26 | 110 | 104 | 186 | 1.81e-12 | 62.4 |
| MsG0180002364.01.T01 | MTR_5g010150 | 36.283 | 113 | 58 | 4 | 13 | 118 | 170 | 275 | 2.19e-12 | 62.8 |
| MsG0180002364.01.T01 | MTR_8g098375 | 36.441 | 118 | 60 | 5 | 13 | 123 | 170 | 279 | 4.19e-12 | 62.0 |
| MsG0180002364.01.T01 | MTR_7g010650 | 35.870 | 92 | 57 | 1 | 26 | 117 | 153 | 242 | 4.39e-12 | 62.0 |
| MsG0180002364.01.T01 | MTR_4g006730 | 38.372 | 86 | 49 | 2 | 26 | 110 | 191 | 273 | 4.51e-12 | 62.0 |
| MsG0180002364.01.T01 | MTR_8g087710 | 32.743 | 113 | 71 | 3 | 17 | 129 | 148 | 255 | 9.53e-12 | 60.8 |
| MsG0180002364.01.T01 | MTR_3g070210 | 36.752 | 117 | 59 | 5 | 14 | 123 | 174 | 282 | 9.83e-12 | 60.8 |
| MsG0180002364.01.T01 | MTR_5g082070 | 36.607 | 112 | 57 | 4 | 13 | 117 | 173 | 277 | 1.39e-11 | 60.5 |
| MsG0180002364.01.T01 | MTR_8g468730 | 33.333 | 93 | 43 | 2 | 29 | 121 | 8 | 81 | 4.57e-11 | 56.2 |
| MsG0180002364.01.T01 | MTR_2g017610 | 38.372 | 86 | 49 | 2 | 26 | 110 | 155 | 237 | 9.48e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002364.01.T01 | AT2G25810 | 81.967 | 122 | 22 | 0 | 13 | 134 | 124 | 245 | 2.12e-69 | 209 |
| MsG0180002364.01.T01 | AT2G36830 | 56.818 | 132 | 53 | 1 | 2 | 129 | 115 | 246 | 1.12e-46 | 151 |
| MsG0180002364.01.T01 | AT3G16240 | 58.974 | 117 | 47 | 1 | 14 | 129 | 129 | 245 | 1.63e-45 | 148 |
| MsG0180002364.01.T01 | AT4G17340 | 52.555 | 137 | 60 | 2 | 2 | 134 | 113 | 248 | 4.15e-45 | 147 |
| MsG0180002364.01.T01 | AT5G47450 | 55.118 | 127 | 53 | 1 | 2 | 124 | 113 | 239 | 7.14e-45 | 147 |
| MsG0180002364.01.T01 | AT3G26520 | 60.000 | 115 | 46 | 0 | 11 | 125 | 129 | 243 | 4.12e-43 | 142 |
| MsG0180002364.01.T01 | AT1G73190 | 53.600 | 125 | 54 | 2 | 2 | 122 | 123 | 247 | 1.77e-39 | 134 |
| MsG0180002364.01.T01 | AT4G01470 | 50.365 | 137 | 63 | 2 | 2 | 133 | 115 | 251 | 4.46e-38 | 129 |
| MsG0180002364.01.T01 | AT1G17810 | 49.194 | 124 | 55 | 1 | 18 | 133 | 143 | 266 | 1.23e-37 | 129 |
| MsG0180002364.01.T01 | AT3G47440 | 44.248 | 113 | 62 | 1 | 10 | 122 | 129 | 240 | 7.84e-27 | 100 |
| MsG0180002364.01.T01 | AT1G52180 | 47.727 | 88 | 46 | 0 | 10 | 97 | 35 | 122 | 1.99e-24 | 91.3 |
| MsG0180002364.01.T01 | AT2G37170 | 36.000 | 125 | 71 | 4 | 8 | 125 | 192 | 314 | 8.06e-17 | 75.5 |
| MsG0180002364.01.T01 | AT2G37170 | 36.000 | 125 | 71 | 4 | 8 | 125 | 149 | 271 | 8.71e-17 | 74.7 |
| MsG0180002364.01.T01 | AT5G60660 | 37.705 | 122 | 67 | 4 | 16 | 130 | 159 | 278 | 1.15e-16 | 74.7 |
| MsG0180002364.01.T01 | AT5G37820 | 41.346 | 104 | 57 | 3 | 26 | 129 | 160 | 259 | 1.37e-16 | 74.3 |
| MsG0180002364.01.T01 | AT2G39010 | 39.130 | 115 | 61 | 4 | 16 | 123 | 158 | 270 | 1.44e-16 | 74.3 |
| MsG0180002364.01.T01 | AT5G37820 | 41.346 | 104 | 57 | 3 | 26 | 129 | 196 | 295 | 1.95e-16 | 74.3 |
| MsG0180002364.01.T01 | AT5G37810 | 41.346 | 104 | 57 | 2 | 26 | 129 | 160 | 259 | 2.23e-16 | 73.6 |
| MsG0180002364.01.T01 | AT3G53420 | 37.607 | 117 | 64 | 4 | 16 | 125 | 159 | 273 | 2.77e-16 | 73.6 |
| MsG0180002364.01.T01 | AT3G53420 | 37.607 | 117 | 64 | 4 | 16 | 125 | 159 | 273 | 2.77e-16 | 73.6 |
| MsG0180002364.01.T01 | AT2G37180 | 38.261 | 115 | 62 | 4 | 18 | 125 | 159 | 271 | 1.20e-15 | 71.6 |
| MsG0180002364.01.T01 | AT4G35100 | 36.364 | 132 | 68 | 6 | 13 | 130 | 142 | 271 | 1.71e-15 | 71.2 |
| MsG0180002364.01.T01 | AT4G35100 | 36.364 | 132 | 68 | 6 | 13 | 130 | 142 | 271 | 1.71e-15 | 71.2 |
| MsG0180002364.01.T01 | AT2G16850 | 33.858 | 127 | 75 | 4 | 16 | 135 | 150 | 274 | 9.88e-15 | 69.3 |
| MsG0180002364.01.T01 | AT4G10380 | 39.604 | 101 | 57 | 2 | 26 | 125 | 194 | 291 | 4.03e-14 | 67.8 |
| MsG0180002364.01.T01 | AT1G31885 | 40.698 | 86 | 49 | 1 | 25 | 110 | 112 | 195 | 4.87e-14 | 67.0 |
| MsG0180002364.01.T01 | AT1G31885 | 40.698 | 86 | 49 | 1 | 25 | 110 | 166 | 249 | 5.44e-14 | 67.4 |
| MsG0180002364.01.T01 | AT3G54820 | 36.283 | 113 | 63 | 4 | 18 | 123 | 160 | 270 | 1.10e-13 | 66.2 |
| MsG0180002364.01.T01 | AT4G00430 | 34.286 | 140 | 69 | 6 | 1 | 118 | 137 | 275 | 3.34e-13 | 65.1 |
| MsG0180002364.01.T01 | AT1G80760 | 38.889 | 90 | 51 | 2 | 22 | 110 | 192 | 278 | 7.00e-13 | 64.3 |
| MsG0180002364.01.T01 | AT4G18910 | 36.207 | 116 | 67 | 4 | 15 | 129 | 166 | 275 | 1.15e-12 | 63.5 |
| MsG0180002364.01.T01 | AT1G01620 | 36.066 | 122 | 63 | 5 | 11 | 118 | 82 | 202 | 1.96e-12 | 62.0 |
| MsG0180002364.01.T01 | AT1G01620 | 36.066 | 122 | 63 | 5 | 11 | 118 | 154 | 274 | 2.34e-12 | 62.8 |
| MsG0180002364.01.T01 | AT4G23400 | 37.273 | 110 | 55 | 4 | 16 | 118 | 173 | 275 | 3.35e-12 | 62.4 |
| MsG0180002364.01.T01 | AT2G45960 | 36.697 | 109 | 61 | 3 | 16 | 117 | 166 | 273 | 4.19e-12 | 62.0 |
| MsG0180002364.01.T01 | AT3G61430 | 36.697 | 109 | 61 | 3 | 16 | 117 | 166 | 273 | 4.63e-12 | 62.0 |
| MsG0180002364.01.T01 | AT3G61430 | 36.697 | 109 | 61 | 3 | 16 | 117 | 166 | 273 | 4.63e-12 | 62.0 |
| MsG0180002364.01.T01 | AT4G19030 | 34.286 | 105 | 63 | 3 | 26 | 129 | 179 | 278 | 3.52e-11 | 59.7 |
| MsG0180002364.01.T01 | AT3G06100 | 30.693 | 101 | 69 | 1 | 19 | 119 | 74 | 173 | 5.21e-11 | 58.2 |
Find 38 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGAAAGGAGGACTTTC+TGG | 0.139053 | 1:-37417982 | MsG0180002364.01.T01:CDS |
| ACAACAAATCCAACCAAAAT+TGG | 0.151579 | 1:+37417952 | None:intergenic |
| CTCATTGGTGGTGGGCTTGC+TGG | 0.168087 | 1:-37417808 | MsG0180002364.01.T01:CDS |
| TTCTGGACTTGGCCCAATTT+TGG | 0.189335 | 1:-37417965 | MsG0180002364.01.T01:CDS |
| CCAGAAAGTCCTCCTTTCTT+TGG | 0.192856 | 1:+37417982 | None:intergenic |
| CTGCATTGGTTAGTGGAAAT+TGG | 0.223669 | 1:-37417861 | MsG0180002364.01.T01:CDS |
| ATGAATCCAGCAAGATCTTT+TGG | 0.260996 | 1:-37417886 | MsG0180002364.01.T01:CDS |
| GGGCTAACATCTTGGCTGGC+GGG | 0.363981 | 1:-37417927 | MsG0180002364.01.T01:CDS |
| GGTGTACTCAAGGAGTAGTT+TGG | 0.378665 | 1:-37418059 | MsG0180002364.01.T01:CDS |
| GTTCACTGTGTATGCAACTA+TGG | 0.382620 | 1:-37418010 | MsG0180002364.01.T01:CDS |
| AAAAGATCTTGCTGGATTCA+TGG | 0.384219 | 1:+37417888 | None:intergenic |
| TTGGCTGGCGGGGCTTTCGC+AGG | 0.386405 | 1:-37417916 | MsG0180002364.01.T01:CDS |
| TTTGGACCTGCATTGGTTAG+TGG | 0.401163 | 1:-37417868 | MsG0180002364.01.T01:CDS |
| TGTTGTAGGGGCTAACATCT+TGG | 0.405323 | 1:-37417935 | MsG0180002364.01.T01:CDS |
| TTGGGCCTCTCATTGGTGGT+GGG | 0.408100 | 1:-37417816 | MsG0180002364.01.T01:CDS |
| TGGGTTGGGCCTCTCATTGG+TGG | 0.430148 | 1:-37417820 | MsG0180002364.01.T01:CDS |
| GTTGGGCCTCTCATTGGTGG+TGG | 0.433600 | 1:-37417817 | MsG0180002364.01.T01:CDS |
| CAACAAATCCAACCAAAATT+GGG | 0.439747 | 1:+37417953 | None:intergenic |
| AAAGGAGGACTTTCTGGACT+TGG | 0.441144 | 1:-37417976 | MsG0180002364.01.T01:CDS |
| GCAGGTCCAAAAGATCTTGC+TGG | 0.456957 | 1:+37417880 | None:intergenic |
| TGGAAATTGGACTGACCAAT+GGG | 0.457985 | 1:-37417848 | MsG0180002364.01.T01:CDS |
| GGCTAACATCTTGGCTGGCG+GGG | 0.461965 | 1:-37417926 | MsG0180002364.01.T01:CDS |
| GTGTACTCAAGGAGTAGTTT+GGG | 0.480313 | 1:-37418058 | MsG0180002364.01.T01:CDS |
| CATACACTTAAAAGTGGAGT+AGG | 0.484564 | 1:-37418081 | MsG0180002364.01.T01:CDS |
| CCAGTTCATACACTTAAAAG+TGG | 0.496805 | 1:-37418087 | MsG0180002364.01.T01:CDS |
| GTGGAAATTGGACTGACCAA+TGG | 0.502211 | 1:-37417849 | MsG0180002364.01.T01:CDS |
| GGGGCTAACATCTTGGCTGG+CGG | 0.514242 | 1:-37417928 | MsG0180002364.01.T01:CDS |
| GTAGGGGCTAACATCTTGGC+TGG | 0.532312 | 1:-37417931 | MsG0180002364.01.T01:CDS |
| CAATTTCCACTAACCAATGC+AGG | 0.555256 | 1:+37417862 | None:intergenic |
| ACTATGGTTGATCCAAAGAA+AGG | 0.565384 | 1:-37417994 | MsG0180002364.01.T01:CDS |
| AACTCATGTTCCTCTCCTTG+TGG | 0.565628 | 1:-37417755 | MsG0180002364.01.T01:CDS |
| TTTGGTTGGATTTGTTGTAG+GGG | 0.576606 | 1:-37417947 | MsG0180002364.01.T01:CDS |
| GCAAGCCCACCACCAATGAG+AGG | 0.582625 | 1:+37417811 | None:intergenic |
| CTTTCTTCATCCACAAGGAG+AGG | 0.595545 | 1:+37417745 | None:intergenic |
| AGTGGAGTAGGGTGTACTCA+AGG | 0.614383 | 1:-37418069 | MsG0180002364.01.T01:CDS |
| AGTAGCTTTCTTCATCCACA+AGG | 0.615821 | 1:+37417740 | None:intergenic |
| ATACACTTAAAAGTGGAGTA+GGG | 0.631270 | 1:-37418080 | MsG0180002364.01.T01:CDS |
| ATGGTTGATCCAAAGAAAGG+AGG | 0.657733 | 1:-37417991 | MsG0180002364.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACAACAAATCCAACCAAAAT+TGG | + | Chr1:37417915-37417934 | None:intergenic | 30.0% | |
| ATACACTTAAAAGTGGAGTA+GGG | - | Chr1:37417784-37417803 | MsG0180002364.01.T01:CDS | 30.0% | |
| CAACAAATCCAACCAAAATT+GGG | + | Chr1:37417914-37417933 | None:intergenic | 30.0% | |
| !!! | ATTTTGGTTGGATTTGTTGT+AGG | - | Chr1:37417915-37417934 | MsG0180002364.01.T01:CDS | 30.0% |
| !!! | TTTTGGTTGGATTTGTTGTA+GGG | - | Chr1:37417916-37417935 | MsG0180002364.01.T01:CDS | 30.0% |
| AAAAGATCTTGCTGGATTCA+TGG | + | Chr1:37417979-37417998 | None:intergenic | 35.0% | |
| ACTATGGTTGATCCAAAGAA+AGG | - | Chr1:37417870-37417889 | MsG0180002364.01.T01:CDS | 35.0% | |
| CATACACTTAAAAGTGGAGT+AGG | - | Chr1:37417783-37417802 | MsG0180002364.01.T01:CDS | 35.0% | |
| CCAGTTCATACACTTAAAAG+TGG | - | Chr1:37417777-37417796 | MsG0180002364.01.T01:CDS | 35.0% | |
| ! | ATGAATCCAGCAAGATCTTT+TGG | - | Chr1:37417978-37417997 | MsG0180002364.01.T01:CDS | 35.0% |
| !! | CCACTTTTAAGTGTATGAAC+TGG | + | Chr1:37417780-37417799 | None:intergenic | 35.0% |
| !! | TTTGGTTGGATTTGTTGTAG+GGG | - | Chr1:37417917-37417936 | MsG0180002364.01.T01:CDS | 35.0% |
| AGTAGCTTTCTTCATCCACA+AGG | + | Chr1:37418127-37418146 | None:intergenic | 40.0% | |
| ATGGTTGATCCAAAGAAAGG+AGG | - | Chr1:37417873-37417892 | MsG0180002364.01.T01:CDS | 40.0% | |
| CAATTTCCACTAACCAATGC+AGG | + | Chr1:37418005-37418024 | None:intergenic | 40.0% | |
| GTGTACTCAAGGAGTAGTTT+GGG | - | Chr1:37417806-37417825 | MsG0180002364.01.T01:CDS | 40.0% | |
| GTTCACTGTGTATGCAACTA+TGG | - | Chr1:37417854-37417873 | MsG0180002364.01.T01:CDS | 40.0% | |
| TGGAAATTGGACTGACCAAT+GGG | - | Chr1:37418016-37418035 | MsG0180002364.01.T01:CDS | 40.0% | |
| ! | AAGATCTTTTGGACCTGCAT+TGG | - | Chr1:37417989-37418008 | MsG0180002364.01.T01:CDS | 40.0% |
| !! | CTGCATTGGTTAGTGGAAAT+TGG | - | Chr1:37418003-37418022 | MsG0180002364.01.T01:CDS | 40.0% |
| !!! | ACCAATGGGTTTTTTGGGTT+GGG | - | Chr1:37418030-37418049 | MsG0180002364.01.T01:CDS | 40.0% |
| !!! | GACTGACCAATGGGTTTTTT+GGG | - | Chr1:37418025-37418044 | MsG0180002364.01.T01:CDS | 40.0% |
| AAAGGAGGACTTTCTGGACT+TGG | - | Chr1:37417888-37417907 | MsG0180002364.01.T01:CDS | 45.0% | |
| AACTCATGTTCCTCTCCTTG+TGG | - | Chr1:37418109-37418128 | MsG0180002364.01.T01:CDS | 45.0% | |
| CCAAAGAAAGGAGGACTTTC+TGG | - | Chr1:37417882-37417901 | MsG0180002364.01.T01:CDS | 45.0% | |
| CCAGAAAGTCCTCCTTTCTT+TGG | + | Chr1:37417885-37417904 | None:intergenic | 45.0% | |
| CTTTCTTCATCCACAAGGAG+AGG | + | Chr1:37418122-37418141 | None:intergenic | 45.0% | |
| GGTGTACTCAAGGAGTAGTT+TGG | - | Chr1:37417805-37417824 | MsG0180002364.01.T01:CDS | 45.0% | |
| GTGGAAATTGGACTGACCAA+TGG | - | Chr1:37418015-37418034 | MsG0180002364.01.T01:CDS | 45.0% | |
| TGTTGTAGGGGCTAACATCT+TGG | - | Chr1:37417929-37417948 | MsG0180002364.01.T01:CDS | 45.0% | |
| ! | TTCTGGACTTGGCCCAATTT+TGG | - | Chr1:37417899-37417918 | MsG0180002364.01.T01:CDS | 45.0% |
| !! | TTTGGACCTGCATTGGTTAG+TGG | - | Chr1:37417996-37418015 | MsG0180002364.01.T01:CDS | 45.0% |
| !!! | GACCAATGGGTTTTTTGGGT+TGG | - | Chr1:37418029-37418048 | MsG0180002364.01.T01:CDS | 45.0% |
| !!! | GGACTGACCAATGGGTTTTT+TGG | - | Chr1:37418024-37418043 | MsG0180002364.01.T01:CDS | 45.0% |
| AGTGGAGTAGGGTGTACTCA+AGG | - | Chr1:37417795-37417814 | MsG0180002364.01.T01:CDS | 50.0% | |
| GCAGGTCCAAAAGATCTTGC+TGG | + | Chr1:37417987-37418006 | None:intergenic | 50.0% | |
| GCCCAACCCAAAAAACCCAT+TGG | + | Chr1:37418034-37418053 | None:intergenic | 50.0% | |
| !! | GGACTTGGCCCAATTTTGGT+TGG | - | Chr1:37417903-37417922 | MsG0180002364.01.T01:CDS | 50.0% |
| !!! | TTTTGGGTTGGGCCTCTCAT+TGG | - | Chr1:37418041-37418060 | MsG0180002364.01.T01:CDS | 50.0% |
| GTAGGGGCTAACATCTTGGC+TGG | - | Chr1:37417933-37417952 | MsG0180002364.01.T01:CDS | 55.0% | |
| ! | TTGGGCCTCTCATTGGTGGT+GGG | - | Chr1:37418048-37418067 | MsG0180002364.01.T01:CDS | 55.0% |
| GCAAGCCCACCACCAATGAG+AGG | + | Chr1:37418056-37418075 | None:intergenic | 60.0% | |
| GGCTAACATCTTGGCTGGCG+GGG | - | Chr1:37417938-37417957 | MsG0180002364.01.T01:CDS | 60.0% | |
| GGGCTAACATCTTGGCTGGC+GGG | - | Chr1:37417937-37417956 | MsG0180002364.01.T01:CDS | 60.0% | |
| GGGGCTAACATCTTGGCTGG+CGG | - | Chr1:37417936-37417955 | MsG0180002364.01.T01:CDS | 60.0% | |
| GTTGGGCCTCTCATTGGTGG+TGG | - | Chr1:37418047-37418066 | MsG0180002364.01.T01:CDS | 60.0% | |
| ! | TGGGTTGGGCCTCTCATTGG+TGG | - | Chr1:37418044-37418063 | MsG0180002364.01.T01:CDS | 60.0% |
| !! | CTCATTGGTGGTGGGCTTGC+TGG | - | Chr1:37418056-37418075 | MsG0180002364.01.T01:CDS | 60.0% |
| TTGGCTGGCGGGGCTTTCGC+AGG | - | Chr1:37417948-37417967 | MsG0180002364.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 37417738 | 37418148 | 37417738 | ID=MsG0180002364.01;Name=MsG0180002364.01 |
| Chr1 | mRNA | 37417738 | 37418148 | 37417738 | ID=MsG0180002364.01.T01;Parent=MsG0180002364.01;Name=MsG0180002364.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|136 |
| Chr1 | exon | 37417738 | 37418148 | 37417738 | ID=MsG0180002364.01.T01:exon:419;Parent=MsG0180002364.01.T01 |
| Chr1 | CDS | 37417738 | 37418148 | 37417738 | ID=MsG0180002364.01.T01:cds;Parent=MsG0180002364.01.T01 |
| Gene Sequence |
| Protein sequence |
