Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029359.01.T01 | XP_003616845.1 | 79.853 | 273 | 51 | 2 | 1 | 273 | 165 | 433 | 1.13E-153 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029359.01.T01 | A0A2P1GIW7 | 33.84 | 263 | 146 | 10 | 1 | 258 | 172 | 411 | 1.29E-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029359.01.T01 | G7K7H3 | 79.853 | 273 | 51 | 2 | 1 | 273 | 165 | 433 | 5.42e-154 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0580029359.01 | 0.822805 | 1.946333e-53 | 1.646154e-50 |
| MsG0180000870.01 | MsG0580029359.01 | 0.804797 | 1.818366e-49 | 9.463086e-47 |
| MsG0180001008.01 | MsG0580029359.01 | 0.815423 | 9.317878e-52 | 6.421516e-49 |
| MsG0180001029.01 | MsG0580029359.01 | 0.803977 | 2.694741e-49 | 1.373105e-46 |
| MsG0180001797.01 | MsG0580029359.01 | 0.800254 | 1.571101e-48 | 7.281443e-46 |
| MsG0180002364.01 | MsG0580029359.01 | 0.806289 | 8.841978e-50 | 4.781059e-47 |
| MsG0180003320.01 | MsG0580029359.01 | 0.859996 | 2.810249e-63 | 7.566694e-60 |
| MsG0180004232.01 | MsG0580029359.01 | 0.814574 | 1.437568e-51 | 9.681582e-49 |
| MsG0180004359.01 | MsG0580029359.01 | 0.814413 | 1.560132e-51 | 1.046203e-48 |
| MsG0180005571.01 | MsG0580029359.01 | 0.815719 | 8.003680e-52 | 5.561114e-49 |
| MsG0280010936.01 | MsG0580029359.01 | 0.803085 | 4.123964e-49 | 2.053601e-46 |
| MsG0380011968.01 | MsG0580029359.01 | 0.804154 | 2.475336e-49 | 1.267025e-46 |
| MsG0380014344.01 | MsG0580029359.01 | 0.810220 | 1.284245e-50 | 7.696668e-48 |
| MsG0480019024.01 | MsG0580029359.01 | 0.807053 | 6.098881e-50 | 3.363149e-47 |
| MsG0480019146.01 | MsG0580029359.01 | 0.859606 | 3.682977e-63 | 9.782144e-60 |
| MsG0480019348.01 | MsG0580029359.01 | 0.809621 | 1.728336e-50 | 1.019794e-47 |
| MsG0480019842.01 | MsG0580029359.01 | 0.820171 | 7.896062e-53 | 6.202149e-50 |
| MsG0480020904.01 | MsG0580029359.01 | 0.815595 | 8.528879e-52 | 5.905842e-49 |
| MsG0480021133.01 | MsG0580029359.01 | 0.803597 | 3.230472e-49 | 1.630120e-46 |
| MsG0480021360.01 | MsG0580029359.01 | 0.808501 | 3.002346e-50 | 1.719555e-47 |
| MsG0480021361.01 | MsG0580029359.01 | 0.803651 | 3.148596e-49 | 1.590891e-46 |
| MsG0480021573.01 | MsG0580029359.01 | 0.810076 | 1.379524e-50 | 8.237013e-48 |
| MsG0480022055.01 | MsG0580029359.01 | 0.810485 | 1.126090e-50 | 6.796301e-48 |
| MsG0480023432.01 | MsG0580029359.01 | 0.822766 | 1.987445e-53 | 1.679194e-50 |
| MsG0580024087.01 | MsG0580029359.01 | 0.820839 | 5.547035e-53 | 4.438429e-50 |
| MsG0580025431.01 | MsG0580029359.01 | 0.807653 | 4.550592e-50 | 2.548732e-47 |
| MsG0580025432.01 | MsG0580029359.01 | 0.830804 | 2.388881e-55 | 2.544209e-52 |
| MsG0580026020.01 | MsG0580029359.01 | 0.805254 | 1.458580e-49 | 7.680004e-47 |
| MsG0380015323.01 | MsG0580029359.01 | 0.807580 | 4.715223e-50 | 2.635884e-47 |
| MsG0380015659.01 | MsG0580029359.01 | 0.845849 | 3.141115e-59 | 5.305277e-56 |
| MsG0380015660.01 | MsG0580029359.01 | 0.817473 | 3.237746e-52 | 2.360330e-49 |
| MsG0380016299.01 | MsG0580029359.01 | 0.845472 | 3.974939e-59 | 6.631621e-56 |
| MsG0380016300.01 | MsG0580029359.01 | 0.813726 | 2.211916e-51 | 1.455838e-48 |
| MsG0580026521.01 | MsG0580029359.01 | 0.824216 | 9.103096e-54 | 8.012179e-51 |
| MsG0580027752.01 | MsG0580029359.01 | 0.837788 | 4.226142e-57 | 5.549864e-54 |
| MsG0580027753.01 | MsG0580029359.01 | 0.821713 | 3.488162e-53 | 2.859882e-50 |
| MsG0580029359.01 | MsG0580029676.01 | 0.810619 | 1.053497e-50 | 6.381092e-48 |
| MsG0580029359.01 | MsG0580029937.01 | 0.816943 | 4.260749e-52 | 3.061413e-49 |
| MsG0580029359.01 | MsG0580029938.01 | 0.820483 | 6.698203e-53 | 5.306418e-50 |
| MsG0580029359.01 | MsG0680031139.01 | 0.800758 | 1.240437e-48 | 5.822649e-46 |
| MsG0580029359.01 | MsG0680031200.01 | 0.822216 | 2.667642e-53 | 2.218640e-50 |
| MsG0580029359.01 | MsG0680031474.01 | 0.807025 | 6.182244e-50 | 3.406661e-47 |
| MsG0580029359.01 | MsG0680032942.01 | 0.802469 | 5.527993e-49 | 2.710035e-46 |
| MsG0580029359.01 | MsG0680034238.01 | 0.811130 | 8.164483e-51 | 5.013011e-48 |
| MsG0580029359.01 | MsG0680034356.01 | 0.816005 | 6.912022e-52 | 4.840056e-49 |
| MsG0580029359.01 | MsG0680034418.01 | 0.822313 | 2.533175e-53 | 2.112763e-50 |
| MsG0580029359.01 | MsG0680034728.01 | 0.825478 | 4.585520e-54 | 4.184323e-51 |
| MsG0580029359.01 | MsG0680034952.01 | 0.811267 | 7.625261e-51 | 4.698728e-48 |
| MsG0580029359.01 | MsG0780036199.01 | 0.837056 | 6.509113e-57 | 8.356828e-54 |
| MsG0580029359.01 | MsG0780036427.01 | 0.809862 | 1.533928e-50 | 9.107800e-48 |
| MsG0580029359.01 | MsG0780036472.01 | 0.836856 | 7.323208e-57 | 9.345416e-54 |
| MsG0580029359.01 | MsG0780036649.01 | 0.820089 | 8.247502e-53 | 6.463648e-50 |
| MsG0580029359.01 | MsG0780036839.01 | 0.848650 | 5.354833e-60 | 9.894092e-57 |
| MsG0580029359.01 | MsG0780038313.01 | 0.820659 | 6.103302e-53 | 4.858516e-50 |
| MsG0580029359.01 | MsG0780038519.01 | 0.819836 | 9.422623e-53 | 7.332154e-50 |
| MsG0580029359.01 | MsG0780038657.01 | 0.808267 | 3.367632e-50 | 1.917029e-47 |
| MsG0580029359.01 | MsG0780039883.01 | 0.826426 | 2.730500e-54 | 2.559894e-51 |
| MsG0580029359.01 | MsG0780039979.01 | 0.819758 | 9.816383e-53 | 7.622058e-50 |
| MsG0580029359.01 | MsG0780040497.01 | 0.838572 | 2.655227e-57 | 3.571036e-54 |
| MsG0580029359.01 | MsG0780040498.01 | 0.847866 | 8.814883e-60 | 1.588310e-56 |
| MsG0580029359.01 | MsG0780040784.01 | 0.800029 | 1.745647e-48 | 8.044181e-46 |
| MsG0580029359.01 | MsG0780040806.01 | 0.804447 | 2.150654e-49 | 1.109132e-46 |
| MsG0580029359.01 | MsG0780041036.01 | 0.809732 | 1.635978e-50 | 9.681079e-48 |
| MsG0580029359.01 | MsG0780041500.01 | 0.810819 | 9.537460e-51 | 5.807873e-48 |
| MsG0580029359.01 | MsG0880041977.01 | 0.805962 | 1.036078e-49 | 5.555860e-47 |
| MsG0580029359.01 | MsG0880042369.01 | 0.800912 | 1.153537e-48 | 5.436428e-46 |
| MsG0580029359.01 | MsG0880042740.01 | 0.811690 | 6.170444e-51 | 3.844873e-48 |
| MsG0580029359.01 | MsG0880043212.01 | 0.814621 | 1.403408e-51 | 9.463370e-49 |
| MsG0580029359.01 | MsG0880043217.01 | 0.826228 | 3.043925e-54 | 2.837660e-51 |
| MsG0580029359.01 | MsG0880044712.01 | 0.805409 | 1.353923e-49 | 7.157592e-47 |
| MsG0580029359.01 | MsG0880046273.01 | 0.814158 | 1.776447e-51 | 1.182944e-48 |
| MsG0580029359.01 | MsG0880046961.01 | 0.803087 | 4.120576e-49 | 2.052001e-46 |
| MsG0580029359.01 | MsG0880047383.01 | 0.821949 | 3.075681e-53 | 2.538608e-50 |
| MsG0280006546.01 | MsG0580029359.01 | 0.813101 | 3.035635e-51 | 1.964135e-48 |
| MsG0280007937.01 | MsG0580029359.01 | 0.810751 | 9.862858e-51 | 5.995263e-48 |
| MsG0280009232.01 | MsG0580029359.01 | 0.807533 | 4.825548e-50 | 2.694372e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029359.01.T01 | MTR_5g084870 | 79.853 | 273 | 51 | 2 | 1 | 273 | 165 | 433 | 1.37e-157 | 446 |
| MsG0580029359.01.T01 | MTR_5g084850 | 79.715 | 281 | 50 | 4 | 1 | 280 | 165 | 439 | 3.56e-156 | 442 |
| MsG0580029359.01.T01 | MTR_8g079950 | 69.258 | 283 | 83 | 3 | 1 | 280 | 165 | 446 | 9.12e-133 | 384 |
| MsG0580029359.01.T01 | MTR_8g079970 | 70.073 | 274 | 78 | 2 | 1 | 271 | 165 | 437 | 3.38e-132 | 382 |
| MsG0580029359.01.T01 | MTR_5g084900 | 70.943 | 265 | 65 | 3 | 13 | 277 | 108 | 360 | 1.20e-128 | 370 |
| MsG0580029359.01.T01 | MTR_8g079980 | 53.430 | 277 | 117 | 5 | 1 | 271 | 166 | 436 | 2.72e-87 | 267 |
| MsG0580029359.01.T01 | MTR_2g007880 | 34.559 | 272 | 148 | 10 | 22 | 268 | 187 | 453 | 1.37e-34 | 130 |
| MsG0580029359.01.T01 | MTR_7g110540 | 42.581 | 155 | 52 | 3 | 65 | 219 | 93 | 210 | 2.15e-33 | 122 |
| MsG0580029359.01.T01 | MTR_3g086020 | 31.481 | 270 | 162 | 11 | 1 | 265 | 164 | 415 | 5.64e-33 | 125 |
| MsG0580029359.01.T01 | MTR_8g467580 | 29.885 | 261 | 160 | 8 | 26 | 269 | 186 | 440 | 1.97e-23 | 99.4 |
| MsG0580029359.01.T01 | MTR_8g467590 | 28.794 | 257 | 162 | 7 | 29 | 269 | 189 | 440 | 3.34e-23 | 98.6 |
| MsG0580029359.01.T01 | MTR_1g094790 | 29.915 | 234 | 137 | 8 | 55 | 268 | 218 | 444 | 6.45e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029359.01.T01 | AT1G24430 | 30.435 | 276 | 172 | 7 | 1 | 268 | 165 | 428 | 8.33e-33 | 125 |
| MsG0580029359.01.T01 | AT3G26040 | 35.102 | 245 | 144 | 8 | 42 | 278 | 205 | 442 | 2.10e-32 | 124 |
| MsG0580029359.01.T01 | AT5G23970 | 31.128 | 257 | 149 | 11 | 29 | 268 | 179 | 424 | 1.19e-26 | 108 |
| MsG0580029359.01.T01 | AT1G24420 | 31.907 | 257 | 147 | 8 | 28 | 268 | 188 | 432 | 1.30e-26 | 108 |
| MsG0580029359.01.T01 | AT1G24420 | 31.907 | 257 | 147 | 8 | 28 | 268 | 188 | 432 | 1.30e-26 | 108 |
| MsG0580029359.01.T01 | AT5G47950 | 29.502 | 261 | 170 | 7 | 12 | 268 | 172 | 422 | 1.94e-24 | 102 |
| MsG0580029359.01.T01 | AT3G30280 | 28.000 | 225 | 147 | 5 | 55 | 268 | 219 | 439 | 1.92e-23 | 99.4 |
| MsG0580029359.01.T01 | AT5G47980 | 31.250 | 256 | 158 | 9 | 28 | 268 | 187 | 439 | 4.16e-21 | 92.8 |
| MsG0580029359.01.T01 | AT4G15390 | 27.240 | 279 | 184 | 9 | 1 | 268 | 172 | 442 | 5.59e-21 | 92.4 |
| MsG0580029359.01.T01 | AT4G15390 | 27.240 | 279 | 184 | 9 | 1 | 268 | 172 | 442 | 5.59e-21 | 92.4 |
| MsG0580029359.01.T01 | AT4G15400 | 28.571 | 224 | 146 | 6 | 54 | 268 | 213 | 431 | 3.37e-19 | 87.0 |
Find 53 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGTCTCTAAATAATTT+TGG | 0.114602 | 5:+95937839 | None:intergenic |
| TCTCTCTTTAACACCATTTC+TGG | 0.146770 | 5:+95938199 | None:intergenic |
| CTGATGTATGAAACGGATTT+TGG | 0.163156 | 5:-95937716 | MsG0580029359.01.T01:CDS |
| AAAACAATGTGGAGTTTAAA+AGG | 0.191415 | 5:-95938177 | MsG0580029359.01.T01:CDS |
| CCTGCATCAAGTAAACTAAA+TGG | 0.242735 | 5:+95938259 | None:intergenic |
| TAAGCATGCAGTTTCAATAA+TGG | 0.276522 | 5:-95938053 | MsG0580029359.01.T01:CDS |
| GGAAATGGAACTAGAGGATT+TGG | 0.287550 | 5:-95937906 | MsG0580029359.01.T01:CDS |
| AAGCATGCAGTTTCAATAAT+GGG | 0.295268 | 5:-95938052 | MsG0580029359.01.T01:CDS |
| TTTCATCTTCCGCTAGCTTT+TGG | 0.298032 | 5:+95938299 | None:intergenic |
| CTGCATCAAGTAAACTAAAT+GGG | 0.363837 | 5:+95938260 | None:intergenic |
| AACACCATTTCTGGGAAGAT+AGG | 0.377854 | 5:+95938208 | None:intergenic |
| TGAAATGATCAAGTCTCTTA+AGG | 0.392506 | 5:-95938140 | MsG0580029359.01.T01:CDS |
| TTTCAATTTCATGAATGATT+GGG | 0.401465 | 5:-95938332 | None:intergenic |
| TCAACATGTTGAACATTGTC+TGG | 0.404597 | 5:+95937521 | None:intergenic |
| GATGACAAATAAGAAGGAAA+TGG | 0.408625 | 5:-95937921 | MsG0580029359.01.T01:CDS |
| TCATGCAAAATGACGCGGTC+TGG | 0.413097 | 5:+95938020 | None:intergenic |
| GAACATGGAAGAGAATAATA+TGG | 0.423310 | 5:-95937591 | MsG0580029359.01.T01:CDS |
| CAAAATTATTTAGAGACAAA+GGG | 0.428339 | 5:-95937838 | MsG0580029359.01.T01:CDS |
| TTGGTTTGCAAAATAAAAGA+AGG | 0.434706 | 5:-95937887 | MsG0580029359.01.T01:CDS |
| CTCTCTTTAACACCATTTCT+GGG | 0.439266 | 5:+95938200 | None:intergenic |
| TTTGCCTATCTTCCCAGAAA+TGG | 0.440943 | 5:-95938212 | MsG0580029359.01.T01:CDS |
| AAACAATGTGGAGTTTAAAA+GGG | 0.448288 | 5:-95938176 | MsG0580029359.01.T01:CDS |
| CCAAAATTATTTAGAGACAA+AGG | 0.455461 | 5:-95937839 | MsG0580029359.01.T01:CDS |
| AAAGTGTAGGGAACATACTT+TGG | 0.455506 | 5:-95937955 | MsG0580029359.01.T01:CDS |
| AAATAAATTAATAATTCTGA+TGG | 0.463091 | 5:-95937648 | MsG0580029359.01.T01:CDS |
| CCATTTAGTTTACTTGATGC+AGG | 0.471532 | 5:-95938259 | MsG0580029359.01.T01:CDS |
| TGTGGATCTTCGCAGAAGAA+TGG | 0.488711 | 5:-95937996 | MsG0580029359.01.T01:CDS |
| TAGGTTTCTGATGTATGAAA+CGG | 0.509458 | 5:-95937723 | MsG0580029359.01.T01:CDS |
| TGAAGAACAACAAGAAGTAC+TGG | 0.510593 | 5:+95937670 | None:intergenic |
| GTCTATGATGACAAATAAGA+AGG | 0.522890 | 5:-95937927 | MsG0580029359.01.T01:CDS |
| AAGATAGGCAAATCCCTTTG+TGG | 0.529715 | 5:+95938223 | None:intergenic |
| TGGTTTGCAAAATAAAAGAA+GGG | 0.546147 | 5:-95937886 | MsG0580029359.01.T01:CDS |
| ATGGATACAAGAGATGGAGA+TGG | 0.549171 | 5:-95937629 | MsG0580029359.01.T01:CDS |
| GTGTACAAGTTGTAATTGCA+TGG | 0.557884 | 5:-95938081 | MsG0580029359.01.T01:CDS |
| GATCAAGTCTCTTAAGGCAA+TGG | 0.558721 | 5:-95938134 | MsG0580029359.01.T01:CDS |
| TAAGAAGGAAATGGAACTAG+AGG | 0.567220 | 5:-95937912 | MsG0580029359.01.T01:CDS |
| GAAGTACTGGTGACCCATGT+TGG | 0.571663 | 5:+95937683 | None:intergenic |
| TGGATACAAGAGATGGAGAT+GGG | 0.578563 | 5:-95937628 | MsG0580029359.01.T01:CDS |
| TTGGGTGGGGAAAACCAACA+TGG | 0.579583 | 5:-95937697 | MsG0580029359.01.T01:CDS |
| TACACATGTGGGAGAATGCA+TGG | 0.581681 | 5:+95938099 | None:intergenic |
| AATTACAACTTGTACACATG+TGG | 0.586248 | 5:+95938087 | None:intergenic |
| AGGAGTTGAGAGCTCAAGAA+CGG | 0.587951 | 5:+95937489 | None:intergenic |
| AACATTGTCTGGATTAAGAG+AGG | 0.594892 | 5:+95937532 | None:intergenic |
| TGCATCAAGTAAACTAAATG+GGG | 0.595118 | 5:+95938261 | None:intergenic |
| ATTCTGATGGATACAAGAGA+TGG | 0.596490 | 5:-95937635 | MsG0580029359.01.T01:CDS |
| AGCATGCAGTTTCAATAATG+GGG | 0.599332 | 5:-95938051 | MsG0580029359.01.T01:CDS |
| GATTGAAGCAATTGTGAACA+TGG | 0.613709 | 5:-95937606 | MsG0580029359.01.T01:CDS |
| ATTACAACTTGTACACATGT+GGG | 0.632861 | 5:+95938088 | None:intergenic |
| TGGGTGGGGAAAACCAACAT+GGG | 0.633850 | 5:-95937696 | MsG0580029359.01.T01:CDS |
| ATTATTTAGAGACAAAGGGA+AGG | 0.636304 | 5:-95937834 | MsG0580029359.01.T01:CDS |
| CACAATCATGCAAAATGACG+CGG | 0.654154 | 5:+95938015 | None:intergenic |
| GTTAAAGAGAGAAAACAATG+TGG | 0.678799 | 5:-95938188 | MsG0580029359.01.T01:CDS |
| CATTATCAACCAAAAGCTAG+CGG | 0.679421 | 5:-95938308 | MsG0580029359.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAATAATTCTGA+TGG | - | Chr5:95938176-95938195 | MsG0580029359.01.T01:CDS | 10.0% |
| !!! | AGTAAATAATATTTTATTCT+CGG | + | Chr5:95938067-95938086 | None:intergenic | 10.0% |
| !!! | GTAAATAATATTTTATTCTC+GGG | + | Chr5:95938066-95938085 | None:intergenic | 15.0% |
| !!! | TATTATTTACTTTTAGTAGT+TGG | - | Chr5:95938076-95938095 | MsG0580029359.01.T01:CDS | 15.0% |
| !! | CAAAATTATTTAGAGACAAA+GGG | - | Chr5:95937986-95938005 | MsG0580029359.01.T01:CDS | 20.0% |
| ! | AAAACAATGTGGAGTTTAAA+AGG | - | Chr5:95937647-95937666 | MsG0580029359.01.T01:CDS | 25.0% |
| ! | AAACAATGTGGAGTTTAAAA+GGG | - | Chr5:95937648-95937667 | MsG0580029359.01.T01:CDS | 25.0% |
| ! | CCAAAATTATTTAGAGACAA+AGG | - | Chr5:95937985-95938004 | MsG0580029359.01.T01:CDS | 25.0% |
| !! | CCTTTGTCTCTAAATAATTT+TGG | + | Chr5:95937988-95938007 | None:intergenic | 25.0% |
| !! | TGGTTTGCAAAATAAAAGAA+GGG | - | Chr5:95937938-95937957 | MsG0580029359.01.T01:CDS | 25.0% |
| !!! | TTGGTTTGCAAAATAAAAGA+AGG | - | Chr5:95937937-95937956 | MsG0580029359.01.T01:CDS | 25.0% |
| AAGCATGCAGTTTCAATAAT+GGG | - | Chr5:95937772-95937791 | MsG0580029359.01.T01:CDS | 30.0% | |
| AATTACAACTTGTACACATG+TGG | + | Chr5:95937740-95937759 | None:intergenic | 30.0% | |
| ATTACAACTTGTACACATGT+GGG | + | Chr5:95937739-95937758 | None:intergenic | 30.0% | |
| ATTATTTAGAGACAAAGGGA+AGG | - | Chr5:95937990-95938009 | MsG0580029359.01.T01:CDS | 30.0% | |
| CTGCATCAAGTAAACTAAAT+GGG | + | Chr5:95937567-95937586 | None:intergenic | 30.0% | |
| GAACATGGAAGAGAATAATA+TGG | - | Chr5:95938233-95938252 | MsG0580029359.01.T01:CDS | 30.0% | |
| GATGACAAATAAGAAGGAAA+TGG | - | Chr5:95937903-95937922 | MsG0580029359.01.T01:CDS | 30.0% | |
| GTCTATGATGACAAATAAGA+AGG | - | Chr5:95937897-95937916 | MsG0580029359.01.T01:CDS | 30.0% | |
| GTTAAAGAGAGAAAACAATG+TGG | - | Chr5:95937636-95937655 | MsG0580029359.01.T01:CDS | 30.0% | |
| TAAGCATGCAGTTTCAATAA+TGG | - | Chr5:95937771-95937790 | MsG0580029359.01.T01:CDS | 30.0% | |
| TAGGTTTCTGATGTATGAAA+CGG | - | Chr5:95938101-95938120 | MsG0580029359.01.T01:CDS | 30.0% | |
| TGAAATGATCAAGTCTCTTA+AGG | - | Chr5:95937684-95937703 | MsG0580029359.01.T01:CDS | 30.0% | |
| TGCATCAAGTAAACTAAATG+GGG | + | Chr5:95937566-95937585 | None:intergenic | 30.0% | |
| ! | AGCAACAATTTTTCCACAAA+GGG | - | Chr5:95937588-95937607 | MsG0580029359.01.T01:CDS | 30.0% |
| !! | AATATTTTATTCTCGGGTTG+AGG | + | Chr5:95938060-95938079 | None:intergenic | 30.0% |
| !! | TGATGTATGAAACGGATTTT+GGG | - | Chr5:95938109-95938128 | MsG0580029359.01.T01:CDS | 30.0% |
| !! | TTACTTTTAGTAGTTGGTGT+AGG | - | Chr5:95938082-95938101 | MsG0580029359.01.T01:CDS | 30.0% |
| AAAGTGTAGGGAACATACTT+TGG | - | Chr5:95937869-95937888 | MsG0580029359.01.T01:CDS | 35.0% | |
| AACATTGTCTGGATTAAGAG+AGG | + | Chr5:95938295-95938314 | None:intergenic | 35.0% | |
| AGCATGCAGTTTCAATAATG+GGG | - | Chr5:95937773-95937792 | MsG0580029359.01.T01:CDS | 35.0% | |
| CATTATCAACCAAAAGCTAG+CGG | - | Chr5:95937516-95937535 | MsG0580029359.01.T01:CDS | 35.0% | |
| CCTGCATCAAGTAAACTAAA+TGG | + | Chr5:95937568-95937587 | None:intergenic | 35.0% | |
| CTCTCTTTAACACCATTTCT+GGG | + | Chr5:95937627-95937646 | None:intergenic | 35.0% | |
| GATTGAAGCAATTGTGAACA+TGG | - | Chr5:95938218-95938237 | MsG0580029359.01.T01:CDS | 35.0% | |
| GTGTACAAGTTGTAATTGCA+TGG | - | Chr5:95937743-95937762 | MsG0580029359.01.T01:CDS | 35.0% | |
| TAAGAAGGAAATGGAACTAG+AGG | - | Chr5:95937912-95937931 | MsG0580029359.01.T01:CDS | 35.0% | |
| TCAACATGTTGAACATTGTC+TGG | + | Chr5:95938306-95938325 | None:intergenic | 35.0% | |
| TCTCTCTTTAACACCATTTC+TGG | + | Chr5:95937628-95937647 | None:intergenic | 35.0% | |
| ! | ATTCTGATGGATACAAGAGA+TGG | - | Chr5:95938189-95938208 | MsG0580029359.01.T01:CDS | 35.0% |
| ! | CATTGCCTGAAAAAAGTGTA+GGG | - | Chr5:95937857-95937876 | MsG0580029359.01.T01:CDS | 35.0% |
| ! | CCATTTAGTTTACTTGATGC+AGG | - | Chr5:95937565-95937584 | MsG0580029359.01.T01:CDS | 35.0% |
| ! | GAGCAACAATTTTTCCACAA+AGG | - | Chr5:95937587-95937606 | MsG0580029359.01.T01:CDS | 35.0% |
| ! | TGAAGAACAACAAGAAGTAC+TGG | + | Chr5:95938157-95938176 | None:intergenic | 35.0% |
| !! | CTGATGTATGAAACGGATTT+TGG | - | Chr5:95938108-95938127 | MsG0580029359.01.T01:CDS | 35.0% |
| !!! | ATGTTCCCTACACTTTTTTC+AGG | + | Chr5:95937865-95937884 | None:intergenic | 35.0% |
| AAGATAGGCAAATCCCTTTG+TGG | + | Chr5:95937604-95937623 | None:intergenic | 40.0% | |
| ATGGATACAAGAGATGGAGA+TGG | - | Chr5:95938195-95938214 | MsG0580029359.01.T01:CDS | 40.0% | |
| CACAATCATGCAAAATGACG+CGG | + | Chr5:95937812-95937831 | None:intergenic | 40.0% | |
| GATCAAGTCTCTTAAGGCAA+TGG | - | Chr5:95937690-95937709 | MsG0580029359.01.T01:CDS | 40.0% | |
| GGAAATGGAACTAGAGGATT+TGG | - | Chr5:95937918-95937937 | MsG0580029359.01.T01:CDS | 40.0% | |
| TGGATACAAGAGATGGAGAT+GGG | - | Chr5:95938196-95938215 | MsG0580029359.01.T01:CDS | 40.0% | |
| TTTGCCTATCTTCCCAGAAA+TGG | - | Chr5:95937612-95937631 | MsG0580029359.01.T01:CDS | 40.0% | |
| ! | AACACCATTTCTGGGAAGAT+AGG | + | Chr5:95937619-95937638 | None:intergenic | 40.0% |
| ! | CCATTGCCTGAAAAAAGTGT+AGG | - | Chr5:95937856-95937875 | MsG0580029359.01.T01:CDS | 40.0% |
| !! | GTATGAAACGGATTTTGGGT+GGG | - | Chr5:95938113-95938132 | MsG0580029359.01.T01:CDS | 40.0% |
| !! | TATGAAACGGATTTTGGGTG+GGG | - | Chr5:95938114-95938133 | MsG0580029359.01.T01:CDS | 40.0% |
| !! | TGTATGAAACGGATTTTGGG+TGG | - | Chr5:95938112-95938131 | MsG0580029359.01.T01:CDS | 40.0% |
| !!! | ACACTTTTTTCAGGCAATGG+AGG | + | Chr5:95937856-95937875 | None:intergenic | 40.0% |
| !!! | CCTACACTTTTTTCAGGCAA+TGG | + | Chr5:95937859-95937878 | None:intergenic | 40.0% |
| !!! | CGCTAGCTTTTGGTTGATAA+TGG | + | Chr5:95937518-95937537 | None:intergenic | 40.0% |
| !!! | TTTCATCTTCCGCTAGCTTT+TGG | + | Chr5:95937528-95937547 | None:intergenic | 40.0% |
| TACACATGTGGGAGAATGCA+TGG | + | Chr5:95937728-95937747 | None:intergenic | 45.0% | |
| TGTGGATCTTCGCAGAAGAA+TGG | - | Chr5:95937828-95937847 | MsG0580029359.01.T01:CDS | 45.0% | |
| !! | CGCGTCATTTTGCATGATTG+TGG | - | Chr5:95937810-95937829 | MsG0580029359.01.T01:CDS | 45.0% |
| TCATGCAAAATGACGCGGTC+TGG | + | Chr5:95937807-95937826 | None:intergenic | 50.0% | |
| TGGGTGGGGAAAACCAACAT+GGG | - | Chr5:95938128-95938147 | MsG0580029359.01.T01:CDS | 50.0% | |
| TTGGGTGGGGAAAACCAACA+TGG | - | Chr5:95938127-95938146 | MsG0580029359.01.T01:CDS | 50.0% | |
| !! | GAAGTACTGGTGACCCATGT+TGG | + | Chr5:95938144-95938163 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 95937502 | 95938344 | 95937502 | ID=MsG0580029359.01;Name=MsG0580029359.01 |
| Chr5 | mRNA | 95937502 | 95938344 | 95937502 | ID=MsG0580029359.01.T01;Parent=MsG0580029359.01;Name=MsG0580029359.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|280 |
| Chr5 | exon | 95937502 | 95938344 | 95937502 | ID=MsG0580029359.01.T01:exon:36077;Parent=MsG0580029359.01.T01 |
| Chr5 | CDS | 95937502 | 95938344 | 95937502 | ID=MsG0580029359.01.T01:cds;Parent=MsG0580029359.01.T01 |
| Gene Sequence |
| Protein sequence |
