AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030960.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030960.01.T01 MTR_6g015315 97.035 371 11 0 3 373 85 455 0.0 742
MsG0680030960.01.T01 MTR_6g015320 79.144 374 71 3 3 373 88 457 0.0 611
MsG0680030960.01.T01 MTR_6g015310 73.699 346 46 3 3 348 33 333 1.39e-180 504
MsG0680030960.01.T01 MTR_6g015815 56.533 375 154 6 4 373 93 463 1.44e-145 421
MsG0680030960.01.T01 MTR_6g015850 56.300 373 155 6 4 373 93 460 1.28e-142 413
MsG0680030960.01.T01 MTR_6g015830 55.053 376 158 7 4 373 93 463 5.22e-138 401
MsG0680030960.01.T01 MTR_7g014330 46.296 378 190 7 4 372 85 458 1.49e-114 341
MsG0680030960.01.T01 MTR_7g014230 45.745 376 191 7 3 369 86 457 5.97e-112 335
MsG0680030960.01.T01 MTR_7g014250 45.767 378 192 7 4 372 85 458 2.67e-110 330
MsG0680030960.01.T01 MTR_7g014360 42.133 375 190 7 4 372 35 388 1.27e-97 295
MsG0680030960.01.T01 MTR_7g014200 41.799 378 208 7 4 370 92 468 7.97e-88 273
MsG0680030960.01.T01 MTR_7g014160 40.365 384 210 8 4 370 92 473 2.84e-86 269
MsG0680030960.01.T01 MTR_7g013850 38.010 392 216 7 4 370 91 480 1.92e-80 254
MsG0680030960.01.T01 MTR_7g014610 39.119 386 215 9 4 370 91 475 3.24e-79 251
MsG0680030960.01.T01 MTR_7g014620 37.632 380 200 10 4 370 77 432 4.13e-69 224
MsG0680030960.01.T01 MTR_7g014310 36.474 329 156 7 29 355 31 308 1.52e-60 197
MsG0680030960.01.T01 MTR_2g089765 31.783 387 238 5 8 373 104 485 9.08e-59 198
MsG0680030960.01.T01 MTR_2g089670 31.830 377 233 6 8 370 111 477 2.00e-52 181
MsG0680030960.01.T01 MTR_3g028210 30.729 384 246 8 4 373 90 467 3.70e-51 177
MsG0680030960.01.T01 MTR_8g012750 33.333 390 231 10 8 373 91 475 2.23e-50 176
MsG0680030960.01.T01 MTR_2g089735 30.102 392 237 12 6 373 86 464 6.47e-49 171
MsG0680030960.01.T01 MTR_2g089755 29.008 393 243 10 6 373 97 478 1.10e-48 171
MsG0680030960.01.T01 MTR_2g089650 29.397 398 231 13 6 373 89 466 1.61e-48 171
MsG0680030960.01.T01 MTR_3g087640 30.179 391 235 12 8 371 94 473 7.48e-46 164
MsG0680030960.01.T01 MTR_7g014670 41.758 182 102 2 194 371 79 260 3.81e-41 145
MsG0680030960.01.T01 MTR_7g015860 30.435 391 215 12 8 366 91 456 2.53e-35 135
MsG0680030960.01.T01 MTR_7g014630 36.126 191 113 4 4 186 92 281 3.46e-31 122
MsG0680030960.01.T01 MTR_7g014205 42.748 131 63 2 209 338 1 120 1.22e-27 105
MsG0680030960.01.T01 MTR_7g014210 44.348 115 62 2 228 340 24 138 3.67e-24 97.8
MsG0680030960.01.T01 MTR_8g075610 23.423 333 219 11 45 365 108 416 1.24e-20 93.2
MsG0680030960.01.T01 MTR_4g094842 27.331 311 197 11 58 363 152 438 5.50e-20 91.3
MsG0680030960.01.T01 MTR_0190s0020 27.523 327 184 13 58 373 147 431 5.15e-19 88.6
MsG0680030960.01.T01 MTR_3g098980 25.714 315 204 10 58 367 144 433 5.52e-19 88.2
MsG0680030960.01.T01 MTR_2g064495 22.857 350 227 10 34 366 106 429 9.01e-19 87.8
MsG0680030960.01.T01 MTR_2g105330 22.741 343 222 10 41 366 113 429 9.01e-18 84.7
MsG0680030960.01.T01 MTR_4g094838 25.392 319 191 7 52 363 144 422 9.57e-18 84.7
MsG0680030960.01.T01 MTR_4g094835 24.038 312 206 8 58 363 150 436 3.86e-17 82.8
MsG0680030960.01.T01 MTR_8g079710 26.074 326 196 13 58 367 143 439 4.78e-17 82.4
MsG0680030960.01.T01 MTR_3g026310 29.682 283 166 12 58 325 138 402 4.81e-17 82.8
MsG0680030960.01.T01 MTR_4g022825 26.730 318 196 14 58 363 138 430 1.94e-16 80.9
MsG0680030960.01.T01 MTR_3g435290 34.783 115 72 2 259 373 9 120 2.44e-16 75.1
MsG0680030960.01.T01 MTR_4g094832 23.810 315 203 9 58 363 134 420 2.58e-16 80.5
MsG0680030960.01.T01 MTR_7g014180 46.429 84 44 1 4 86 90 173 3.99e-16 75.9
MsG0680030960.01.T01 MTR_7g026860 28.214 280 172 10 52 322 130 389 5.87e-16 79.3
MsG0680030960.01.T01 MTR_7g084940 25.157 318 207 10 61 370 150 444 1.14e-15 78.6
MsG0680030960.01.T01 MTR_4g094828 24.789 355 208 15 10 325 67 401 2.09e-15 77.8
MsG0680030960.01.T01 MTR_3g435300 27.461 193 119 7 8 187 87 271 3.26e-15 75.5
MsG0680030960.01.T01 MTR_4g127650 22.995 374 245 13 20 370 103 456 1.01e-14 75.5
MsG0680030960.01.T01 MTR_2g089745 45.714 70 38 0 304 373 11 80 1.47e-13 65.9
MsG0680030960.01.T01 MTR_7g086000 21.910 356 233 11 43 371 121 458 2.21e-13 71.6
MsG0680030960.01.T01 MTR_7g084910 30.526 190 102 7 61 242 151 318 5.45e-13 70.1
MsG0680030960.01.T01 MTR_8g079970 22.257 319 210 8 57 364 131 422 6.81e-13 70.1
MsG0680030960.01.T01 MTR_7g085990 22.969 357 233 12 45 373 118 460 2.78e-12 68.2
MsG0680030960.01.T01 MTR_5g081960 22.923 349 206 13 58 359 140 472 3.06e-12 68.2
MsG0680030960.01.T01 MTR_8g040780 26.699 206 138 7 166 363 22 222 4.31e-12 65.9
MsG0680030960.01.T01 MTR_7g085930 24.370 357 228 12 45 373 122 464 6.70e-12 67.0
MsG0680030960.01.T01 MTR_4g097090 22.792 351 235 12 40 370 122 456 8.09e-12 66.6
MsG0680030960.01.T01 MTR_4g094825 31.507 146 77 5 226 363 251 381 3.25e-11 64.7
MsG0680030960.01.T01 MTR_8g041770 25.387 323 195 14 58 373 147 430 4.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030960.01.T01 AT5G39050 38.701 385 206 12 6 371 95 468 7.08e-80 253
MsG0680030960.01.T01 AT5G39090 36.649 382 203 10 6 371 90 448 1.93e-76 243
MsG0680030960.01.T01 AT3G29635 37.270 381 214 10 2 371 89 455 3.21e-75 240
MsG0680030960.01.T01 AT3G29590 35.809 377 214 10 8 371 88 449 1.56e-72 233
MsG0680030960.01.T01 AT5G39080 34.574 376 219 11 8 366 92 457 4.43e-71 229
MsG0680030960.01.T01 AT3G29670 33.512 373 234 7 4 372 89 451 8.58e-65 213
MsG0680030960.01.T01 AT5G61160 33.687 377 226 11 2 368 86 448 1.20e-63 210
MsG0680030960.01.T01 AT3G29680 34.153 366 227 6 6 366 87 443 1.97e-63 209
MsG0680030960.01.T01 AT1G03940 29.351 385 222 12 16 371 102 465 5.75e-39 145
MsG0680030960.01.T01 AT3G29690 37.423 163 92 3 211 372 27 180 5.17e-28 108
MsG0680030960.01.T01 AT3G29720 34.211 190 104 7 18 200 26 201 9.19e-22 92.8
MsG0680030960.01.T01 AT5G57840 23.529 340 228 10 45 370 117 438 2.72e-19 89.4
MsG0680030960.01.T01 AT5G48930 23.529 340 220 11 45 368 117 432 4.20e-19 88.6
MsG0680030960.01.T01 AT3G50280 27.599 279 164 11 58 325 14 265 9.01e-16 77.8
MsG0680030960.01.T01 AT5G41040 23.810 315 213 9 59 368 148 440 9.80e-16 78.6
MsG0680030960.01.T01 AT5G41040 23.810 315 213 9 59 368 164 456 1.03e-15 78.6
MsG0680030960.01.T01 AT3G50280 27.402 281 162 12 58 325 144 395 2.40e-15 77.4
MsG0680030960.01.T01 AT1G03495 28.400 250 151 9 16 249 102 339 2.93e-15 76.6
MsG0680030960.01.T01 AT5G42830 24.444 315 206 11 57 362 147 438 5.05e-13 70.5
MsG0680030960.01.T01 AT3G48720 22.343 367 237 12 16 366 94 428 7.31e-13 70.1
MsG0680030960.01.T01 AT5G38130 25.163 306 194 10 58 355 165 443 1.21e-12 69.3
MsG0680030960.01.T01 AT2G39980 24.157 356 220 16 42 359 123 466 1.50e-12 68.9
MsG0680030960.01.T01 AT3G50270 30.061 163 106 5 166 322 237 397 9.55e-12 66.6
MsG0680030960.01.T01 AT5G07850 24.274 379 243 15 1 362 91 442 3.28e-11 65.1

Find 68 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTAATGCAAATTATTT+TGG 0.083055 6:-12192928 MsG0680030960.01.T01:CDS
CCAAAATAATTTGCATTAAT+TGG 0.091109 6:+12192928 None:intergenic
TCAAAAGGGTGGTTGAATTT+TGG 0.164954 6:-12193228 MsG0680030960.01.T01:CDS
CACAAAGATTTGAACATAAA+AGG 0.188006 6:+12193538 None:intergenic
AAAGGTACCTTGTTGGATTT+TGG 0.196421 6:+12192988 None:intergenic
ATTTGACTCAGCTACAATTA+AGG 0.240047 6:+12193572 None:intergenic
GAAGTAACATCAACTTTCTT+AGG 0.241380 6:+12192664 None:intergenic
CCCTATAGGGTCTCTTATAA+TGG 0.299424 6:+12193266 None:intergenic
TGTTGTGTCAAAATTAGTTT+TGG 0.315208 6:-12192899 MsG0680030960.01.T01:CDS
AGTTACTTGTGCTTATTTGT+TGG 0.323900 6:-12193034 MsG0680030960.01.T01:CDS
TGTTGAAGGGTTTGGAGAAT+TGG 0.328116 6:-12192789 MsG0680030960.01.T01:CDS
GGAAACAATCAATACGATAA+AGG 0.328461 6:-12193172 MsG0680030960.01.T01:CDS
TTTGACTCAGCTACAATTAA+GGG 0.333807 6:+12193573 None:intergenic
GTGTTGAAGGGTTTGGAAAA+TGG 0.338259 6:-12192814 MsG0680030960.01.T01:CDS
TAAATCTCATTTATCCCTAT+AGG 0.339393 6:+12193252 None:intergenic
TAATCGAAGCTTGAAGGTTT+GGG 0.348105 6:-12193193 MsG0680030960.01.T01:CDS
ATAATCGAAGCTTGAAGGTT+TGG 0.353389 6:-12193194 MsG0680030960.01.T01:CDS
CTAGGGACATAGTTGATGAT+AGG 0.385902 6:+12193606 None:intergenic
TGTGGATTGTAGGCCACGTT+TGG 0.395299 6:-12192956 MsG0680030960.01.T01:CDS
CCATTATAAGAGACCCTATA+GGG 0.397065 6:-12193266 MsG0680030960.01.T01:CDS
CATGTGAAATCTCCAAAGTT+GGG 0.400447 6:+12193490 None:intergenic
TCATGTGAAATCTCCAAAGT+TGG 0.401690 6:+12193489 None:intergenic
CAACTTTGTTTATGAAAGCT+TGG 0.412169 6:-12193368 MsG0680030960.01.T01:CDS
ACAATACTTGATCCCAACTT+TGG 0.412297 6:-12193502 MsG0680030960.01.T01:CDS
AAATCTCATTTATCCCTATA+GGG 0.418843 6:+12193253 None:intergenic
TAAATGAGATTTATTCAAAA+GGG 0.420073 6:-12193242 MsG0680030960.01.T01:CDS
ATCTAACACCTTTCTTTGAT+AGG 0.425067 6:-12193290 MsG0680030960.01.T01:CDS
ACACACCATGCAGCTGTTGA+TGG 0.425754 6:-12193399 MsG0680030960.01.T01:CDS
GTTACTTCTATTGACAAAAC+AGG 0.426766 6:-12192649 MsG0680030960.01.T01:CDS
AACAAATAATCGAAGCTTGA+AGG 0.430495 6:-12193199 MsG0680030960.01.T01:CDS
ATAAATGAGATTTATTCAAA+AGG 0.440088 6:-12193243 MsG0680030960.01.T01:CDS
AATGATGGTGGAATTGAGAT+TGG 0.442831 6:-12192598 MsG0680030960.01.T01:CDS
GAAACAATCAATACGATAAA+GGG 0.443439 6:-12193171 MsG0680030960.01.T01:CDS
AAATGGTGTGTTGAAGGGTT+TGG 0.446123 6:-12192797 MsG0680030960.01.T01:CDS
AAGTGATGTGTTGAAGGGTT+TGG 0.446481 6:-12192821 MsG0680030960.01.T01:CDS
CCAATACAAAATCCATGGTT+AGG 0.454240 6:+12193429 None:intergenic
AAATAATTTGCATTAATTGG+TGG 0.462390 6:+12192931 None:intergenic
GGATTTATTAGTGCTCTTGA+AGG 0.463437 6:-12192847 MsG0680030960.01.T01:CDS
TCCATTATAAGAGACCCTAT+AGG 0.464997 6:-12193267 MsG0680030960.01.T01:CDS
GGCTCTGAACAAGCAACAAA+TGG 0.474588 6:-12192572 MsG0680030960.01.T01:CDS
AGGGATAAGTGATGTGTTGA+AGG 0.478909 6:-12192827 MsG0680030960.01.T01:CDS
CTACAATGAGTGAGACAGAT+AGG 0.486370 6:-12192750 MsG0680030960.01.T01:CDS
TTTGGAAAATGGTGTGTTGA+AGG 0.486429 6:-12192803 MsG0680030960.01.T01:CDS
ATGAGATTTATTCAAAAGGG+TGG 0.512779 6:-12193239 MsG0680030960.01.T01:CDS
TTTCTATTGCCGGGTCACCT+AGG 0.521742 6:-12192723 MsG0680030960.01.T01:CDS
TGGTGGAATTGAGATTGGTT+TGG 0.524781 6:-12192593 MsG0680030960.01.T01:CDS
AAGAAAGGTGTTAGATCTTG+AGG 0.528202 6:+12193297 None:intergenic
TTGGAAAATGGTGTGTTGAA+GGG 0.530378 6:-12192802 MsG0680030960.01.T01:CDS
TAGGGACATAGTTGATGATA+GGG 0.535295 6:+12193607 None:intergenic
TCGGAGAATAAGAATAATGA+TGG 0.536773 6:-12192613 MsG0680030960.01.T01:CDS
ATAATGGACCTATCAAAGAA+AGG 0.539512 6:+12193282 None:intergenic
GAGAATAAGAATAATGATGG+TGG 0.545768 6:-12192610 MsG0680030960.01.T01:CDS
GATTTATTAGTGCTCTTGAA+GGG 0.556348 6:-12192846 MsG0680030960.01.T01:CDS
AGGTGTTAGATCTTGAGGTA+AGG 0.574815 6:+12193302 None:intergenic
TTATACCAATACAAAATCCA+TGG 0.591024 6:+12193424 None:intergenic
ATCTTGAGGTAAGGACAAAG+AGG 0.592141 6:+12193311 None:intergenic
AACATCAAACCTAGGTGACC+CGG 0.601706 6:+12192714 None:intergenic
ATTAAGGGAATAGAATCACT+AGG 0.605868 6:+12193588 None:intergenic
GGGATAAGTGATGTGTTGAA+GGG 0.612234 6:-12192826 MsG0680030960.01.T01:CDS
AAACTATAAACATCAAACCT+AGG 0.613927 6:+12192706 None:intergenic
TCTGAACAAGCAACAAATGG+AGG 0.625410 6:-12192569 MsG0680030960.01.T01:CDS
ATAAAGGGTGAAGCAATCAA+AGG 0.633498 6:-12193156 MsG0680030960.01.T01:CDS
TCTTGAGGTAAGGACAAAGA+GGG 0.634121 6:+12193312 None:intergenic
ATTTGCCATCAACAGCTGCA+TGG 0.639451 6:+12193394 None:intergenic
TTAAGGGAATAGAATCACTA+GGG 0.654848 6:+12193589 None:intergenic
TTAATTGGTGGATCCAAACG+TGG 0.667330 6:+12192943 None:intergenic
ACATAGTTGATGATAGGGTG+TGG 0.685311 6:+12193612 None:intergenic
TGACCAACCAAAATCCAACA+AGG 0.709340 6:-12192995 MsG0680030960.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATGAGATTTATTCAAA+AGG - Chr6:12192912-12192931 MsG0680030960.01.T01:CDS 15.0%
!! TAAATGAGATTTATTCAAAA+GGG - Chr6:12192913-12192932 MsG0680030960.01.T01:CDS 15.0%
!! CAAGATTGAAAAAAATAACA+AGG - Chr6:12193076-12193095 MsG0680030960.01.T01:CDS 20.0%
!!! AAATAATTTGCATTAATTGG+TGG + Chr6:12193227-12193246 None:intergenic 20.0%
!!! ATCTTCTTTTAAAAATTCCT+CGG + Chr6:12193288-12193307 None:intergenic 20.0%
!!! CCAAAATAATTTGCATTAAT+TGG + Chr6:12193230-12193249 None:intergenic 20.0%
!!! CCAATTAATGCAAATTATTT+TGG - Chr6:12193227-12193246 MsG0680030960.01.T01:CDS 20.0%
!!! CTTGTTATTTTTTTCAATCT+TGG + Chr6:12193078-12193097 None:intergenic 20.0%
!!! GATGTTTATAGTTTTGATTT+TGG - Chr6:12193458-12193477 MsG0680030960.01.T01:CDS 20.0%
!!! TTATAGTTTTGATTTTGGAT+GGG - Chr6:12193463-12193482 MsG0680030960.01.T01:CDS 20.0%
!!! TTTATAGTTTTGATTTTGGA+TGG - Chr6:12193462-12193481 MsG0680030960.01.T01:CDS 20.0%
! AAACTATAAACATCAAACCT+AGG + Chr6:12193452-12193471 None:intergenic 25.0%
! AAATCTCATTTATCCCTATA+GGG + Chr6:12192905-12192924 None:intergenic 25.0%
! CAATCCACACTAAAAATAAA+AGG + Chr6:12193188-12193207 None:intergenic 25.0%
! CACAAAGATTTGAACATAAA+AGG + Chr6:12192620-12192639 None:intergenic 25.0%
! GAAACAATCAATACGATAAA+GGG - Chr6:12192984-12193003 MsG0680030960.01.T01:CDS 25.0%
! TAAATCTCATTTATCCCTAT+AGG + Chr6:12192906-12192925 None:intergenic 25.0%
! TTATACCAATACAAAATCCA+TGG + Chr6:12192734-12192753 None:intergenic 25.0%
!! TTAAGCTTTTGAATATCCAA+AGG + Chr6:12193041-12193060 None:intergenic 25.0%
!!! AAAAATAAAAGGTACCTTGT+TGG + Chr6:12193177-12193196 None:intergenic 25.0%
!!! GAGGAATTTTTAAAAGAAGA+TGG - Chr6:12193287-12193306 MsG0680030960.01.T01:CDS 25.0%
!!! GTTGTGTCAAAATTAGTTTT+GGG - Chr6:12193257-12193276 MsG0680030960.01.T01:CDS 25.0%
!!! TATAGTTTTGATTTTGGATG+GGG - Chr6:12193464-12193483 MsG0680030960.01.T01:CDS 25.0%
!!! TATTTTTCAATTGACACCTT+TGG - Chr6:12193022-12193041 MsG0680030960.01.T01:CDS 25.0%
!!! TGTTGTGTCAAAATTAGTTT+TGG - Chr6:12193256-12193275 MsG0680030960.01.T01:CDS 25.0%
!!! TTATTTTTAGTGTGGATTGT+AGG - Chr6:12193189-12193208 MsG0680030960.01.T01:CDS 25.0%
AACAAATAATCGAAGCTTGA+AGG - Chr6:12192956-12192975 MsG0680030960.01.T01:CDS 30.0%
AGTTACTTGTGCTTATTTGT+TGG - Chr6:12193121-12193140 MsG0680030960.01.T01:CDS 30.0%
ATCTAACACCTTTCTTTGAT+AGG - Chr6:12192865-12192884 MsG0680030960.01.T01:CDS 30.0%
ATGAGATTTATTCAAAAGGG+TGG - Chr6:12192916-12192935 MsG0680030960.01.T01:CDS 30.0%
ATTAAGGGAATAGAATCACT+AGG + Chr6:12192570-12192589 None:intergenic 30.0%
ATTTGACTCAGCTACAATTA+AGG + Chr6:12192586-12192605 None:intergenic 30.0%
GAAGTAACATCAACTTTCTT+AGG + Chr6:12193494-12193513 None:intergenic 30.0%
GAGAATAAGAATAATGATGG+TGG - Chr6:12193545-12193564 MsG0680030960.01.T01:CDS 30.0%
GATTTATTAGTGCTCTTGAA+GGG - Chr6:12193309-12193328 MsG0680030960.01.T01:CDS 30.0%
GGAAACAATCAATACGATAA+AGG - Chr6:12192983-12193002 MsG0680030960.01.T01:CDS 30.0%
GTTACTTCTATTGACAAAAC+AGG - Chr6:12193506-12193525 MsG0680030960.01.T01:CDS 30.0%
TCGGAGAATAAGAATAATGA+TGG - Chr6:12193542-12193561 MsG0680030960.01.T01:CDS 30.0%
TTAAGGGAATAGAATCACTA+GGG + Chr6:12192569-12192588 None:intergenic 30.0%
TTTGACTCAGCTACAATTAA+GGG + Chr6:12192585-12192604 None:intergenic 30.0%
! CAACTTTGTTTATGAAAGCT+TGG - Chr6:12192787-12192806 MsG0680030960.01.T01:CDS 30.0%
!! ATAATGGACCTATCAAAGAA+AGG + Chr6:12192876-12192895 None:intergenic 30.0%
!! TTTGCTCAACTTTTTCTTCA+AGG - Chr6:12193611-12193630 MsG0680030960.01.T01:CDS 30.0%
!!! AAGAGGGTGTATTTTTTTCA+AGG + Chr6:12192830-12192849 None:intergenic 30.0%
!!! GGTACCTTTTATTTTTAGTG+TGG - Chr6:12193181-12193200 MsG0680030960.01.T01:CDS 30.0%
ACAATACTTGATCCCAACTT+TGG - Chr6:12192653-12192672 MsG0680030960.01.T01:CDS 35.0%
ATAAAGGGTGAAGCAATCAA+AGG - Chr6:12192999-12193018 MsG0680030960.01.T01:CDS 35.0%
ATAATCGAAGCTTGAAGGTT+TGG - Chr6:12192961-12192980 MsG0680030960.01.T01:CDS 35.0%
CATGTGAAATCTCCAAAGTT+GGG + Chr6:12192668-12192687 None:intergenic 35.0%
CCAATACAAAATCCATGGTT+AGG + Chr6:12192729-12192748 None:intergenic 35.0%
CCATTATAAGAGACCCTATA+GGG - Chr6:12192889-12192908 MsG0680030960.01.T01:CDS 35.0%
GGATTTATTAGTGCTCTTGA+AGG - Chr6:12193308-12193327 MsG0680030960.01.T01:CDS 35.0%
TAATCGAAGCTTGAAGGTTT+GGG - Chr6:12192962-12192981 MsG0680030960.01.T01:CDS 35.0%
TCATGTGAAATCTCCAAAGT+TGG + Chr6:12192669-12192688 None:intergenic 35.0%
TCCATTATAAGAGACCCTAT+AGG - Chr6:12192888-12192907 MsG0680030960.01.T01:CDS 35.0%
TTGGAAAATGGTGTGTTGAA+GGG - Chr6:12193353-12193372 MsG0680030960.01.T01:CDS 35.0%
TTTGGAAAATGGTGTGTTGA+AGG - Chr6:12193352-12193371 MsG0680030960.01.T01:CDS 35.0%
! ATAGGATGTTTTCTATTGCC+GGG - Chr6:12193423-12193442 MsG0680030960.01.T01:CDS 35.0%
! CCTAACCATGGATTTTGTAT+TGG - Chr6:12192726-12192745 MsG0680030960.01.T01:CDS 35.0%
! GATAGGATGTTTTCTATTGC+CGG - Chr6:12193422-12193441 MsG0680030960.01.T01:CDS 35.0%
! TCAAAAGGGTGGTTGAATTT+TGG - Chr6:12192927-12192946 MsG0680030960.01.T01:CDS 35.0%
!! AAGAAAGGTGTTAGATCTTG+AGG + Chr6:12192861-12192880 None:intergenic 35.0%
!! AATGATGGTGGAATTGAGAT+TGG - Chr6:12193557-12193576 MsG0680030960.01.T01:CDS 35.0%
!! TAGGGACATAGTTGATGATA+GGG + Chr6:12192551-12192570 None:intergenic 35.0%
!!! AAAGGTACCTTGTTGGATTT+TGG + Chr6:12193170-12193189 None:intergenic 35.0%
!!! AACAGGTGCTTTTTCTCTTT+CGG - Chr6:12193523-12193542 MsG0680030960.01.T01:CDS 35.0%
!!! GGGTGTATTTTTTTCAAGGT+TGG + Chr6:12192826-12192845 None:intergenic 35.0%
!!! GTCACTTTTTTTCCTAACCA+TGG - Chr6:12192714-12192733 MsG0680030960.01.T01:CDS 35.0%
AAATGGTGTGTTGAAGGGTT+TGG - Chr6:12193358-12193377 MsG0680030960.01.T01:CDS 40.0%
AAGTGATGTGTTGAAGGGTT+TGG - Chr6:12193334-12193353 MsG0680030960.01.T01:CDS 40.0%
AGGGATAAGTGATGTGTTGA+AGG - Chr6:12193328-12193347 MsG0680030960.01.T01:CDS 40.0%
AGGTGTTAGATCTTGAGGTA+AGG + Chr6:12192856-12192875 None:intergenic 40.0%
ATCTTGAGGTAAGGACAAAG+AGG + Chr6:12192847-12192866 None:intergenic 40.0%
CCCTATAGGGTCTCTTATAA+TGG + Chr6:12192892-12192911 None:intergenic 40.0%
CTACAATGAGTGAGACAGAT+AGG - Chr6:12193405-12193424 MsG0680030960.01.T01:CDS 40.0%
GGGATAAGTGATGTGTTGAA+GGG - Chr6:12193329-12193348 MsG0680030960.01.T01:CDS 40.0%
GTGTTGAAGGGTTTGGAAAA+TGG - Chr6:12193341-12193360 MsG0680030960.01.T01:CDS 40.0%
TCTGAACAAGCAACAAATGG+AGG - Chr6:12193586-12193605 MsG0680030960.01.T01:CDS 40.0%
TCTTGAGGTAAGGACAAAGA+GGG + Chr6:12192846-12192865 None:intergenic 40.0%
TGACCAACCAAAATCCAACA+AGG - Chr6:12193160-12193179 MsG0680030960.01.T01:CDS 40.0%
TGTTGAAGGGTTTGGAGAAT+TGG - Chr6:12193366-12193385 MsG0680030960.01.T01:CDS 40.0%
! AAAGGGTGGTTGAATTTTGG+AGG - Chr6:12192930-12192949 MsG0680030960.01.T01:CDS 40.0%
! TGGTGGAATTGAGATTGGTT+TGG - Chr6:12193562-12193581 MsG0680030960.01.T01:CDS 40.0%
! TTAATTGGTGGATCCAAACG+TGG + Chr6:12193215-12193234 None:intergenic 40.0%
!! ACATAGTTGATGATAGGGTG+TGG + Chr6:12192546-12192565 None:intergenic 40.0%
!! CTAGGGACATAGTTGATGAT+AGG + Chr6:12192552-12192571 None:intergenic 40.0%
!! GTACCTTGTTGGATTTTGGT+TGG + Chr6:12193166-12193185 None:intergenic 40.0%
!!! ATTAGTTTTGGGTGAAACCG+AGG - Chr6:12193268-12193287 MsG0680030960.01.T01:CDS 40.0%
AACATCAAACCTAGGTGACC+CGG + Chr6:12193444-12193463 None:intergenic 45.0%
ATTTGCCATCAACAGCTGCA+TGG + Chr6:12192764-12192783 None:intergenic 45.0%
!! GGCTCTGAACAAGCAACAAA+TGG - Chr6:12193583-12193602 MsG0680030960.01.T01:CDS 45.0%
ACACACCATGCAGCTGTTGA+TGG - Chr6:12192756-12192775 MsG0680030960.01.T01:CDS 50.0%
TTTCTATTGCCGGGTCACCT+AGG - Chr6:12193432-12193451 MsG0680030960.01.T01:CDS 50.0%
! TGTGGATTGTAGGCCACGTT+TGG - Chr6:12193199-12193218 MsG0680030960.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr6 gene 12192528 12193649 12192528 ID=MsG0680030960.01;Name=MsG0680030960.01
Chr6 mRNA 12192528 12193649 12192528 ID=MsG0680030960.01.T01;Parent=MsG0680030960.01;Name=MsG0680030960.01.T01;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|373
Chr6 exon 12192528 12193649 12192528 ID=MsG0680030960.01.T01:exon:8767;Parent=MsG0680030960.01.T01
Chr6 CDS 12192528 12193649 12192528 ID=MsG0680030960.01.T01:cds;Parent=MsG0680030960.01.T01
Gene Sequence

>MsG0680030960.01.T01

CTGGCACAAGATTCACCACACCCTATCATCAACTATGTCCCTAGTGATTCTATTCCCTTAATTGTAGCTGAGTCAAATGAAAATTTCAACCTTTTATGTTCAAATCTTTGTGAAGTTGAAAAAAAACAATACTTGATCCCAACTTTGGAGATTTCACATGAAAAAGCATCAATTGTTTCACTACAAGTCACTTTTTTTCCTAACCATGGATTTTGTATTGGTATAACTACACACCATGCAGCTGTTGATGGCAAATCTTCAACTTTGTTTATGAAAGCTTGGTCTTATTTTTGTTCCAACCTTGAAAAAAATACACCCTCTTTGTCCTTACCTCAAGATCTAACACCTTTCTTTGATAGGTCCATTATAAGAGACCCTATAGGGATAAATGAGATTTATTCAAAAGGGTGGTTGAATTTTGGAGGAGAAACAAATAATCGAAGCTTGAAGGTTTGGGAAACAATCAATACGATAAAGGGTGAAGCAATCAAAGGTATTTTTCAATTGACACCTTTGGATATTCAAAAGCTTAAGAAACATGCACAATCCAAGATTGAAAAAAATAACAAGGTTATTAAGCTTTCAACTTTTTCAGTTACTTGTGCTTATTTGTTGGCATGTGCGATCAAAGTTGACCAACCAAAATCCAACAAGGTACCTTTTATTTTTAGTGTGGATTGTAGGCCACGTTTGGATCCACCAATTAATGCAAATTATTTTGGAAATTGTGTTGTGTCAAAATTAGTTTTGGGTGAAACCGAGGAATTTTTAAAAGAAGATGGATTTATTAGTGCTCTTGAAGGGATAAGTGATGTGTTGAAGGGTTTGGAAAATGGTGTGTTGAAGGGTTTGGAGAATTGGATGTCAATAATGCAATCTACAATGAGTGAGACAGATAGGATGTTTTCTATTGCCGGGTCACCTAGGTTTGATGTTTATAGTTTTGATTTTGGATGGGGTAAACCTAAGAAAGTTGATGTTACTTCTATTGACAAAACAGGTGCTTTTTCTCTTTCGGAGAATAAGAATAATGATGGTGGAATTGAGATTGGTTTGGCTCTGAACAAGCAACAAATGGAGGTTTTTGCTCAACTTTTTCTTCAAGGACTTGAATCCTTGTAA

Protein sequence

>MsG0680030960.01.T01

LAQDSPHPIINYVPSDSIPLIVAESNENFNLLCSNLCEVEKKQYLIPTLEISHEKASIVSLQVTFFPNHGFCIGITTHHAAVDGKSSTLFMKAWSYFCSNLEKNTPSLSLPQDLTPFFDRSIIRDPIGINEIYSKGWLNFGGETNNRSLKVWETINTIKGEAIKGIFQLTPLDIQKLKKHAQSKIEKNNKVIKLSTFSVTCAYLLACAIKVDQPKSNKVPFIFSVDCRPRLDPPINANYFGNCVVSKLVLGETEEFLKEDGFISALEGISDVLKGLENGVLKGLENWMSIMQSTMSETDRMFSIAGSPRFDVYSFDFGWGKPKKVDVTSIDKTGAFSLSENKNNDGGIEIGLALNKQQMEVFAQLFLQGLESL*