AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046273.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046273.01.T01 MTR_4g104610 76.471 238 21 4 1 203 63 300 8.69e-118 344
MsG0880046273.01.T01 MTR_4g104550 64.979 237 41 4 1 203 63 291 1.94e-96 290
MsG0880046273.01.T01 MTR_4g104540 60.084 238 52 4 1 203 1 230 1.73e-86 262
MsG0880046273.01.T01 MTR_0022s0290 46.311 244 86 6 1 203 76 315 2.28e-64 207
MsG0880046273.01.T01 MTR_4g089030 47.083 240 84 5 1 203 83 316 1.08e-63 206
MsG0880046273.01.T01 MTR_4g089020 46.581 234 88 6 1 203 65 292 2.09e-61 199
MsG0880046273.01.T01 MTR_4g089025 45.339 236 91 5 1 203 87 317 6.42e-60 196
MsG0880046273.01.T01 MTR_4g089055 44.206 233 95 4 1 203 87 314 5.32e-54 181
MsG0880046273.01.T01 MTR_3g076530 33.475 236 112 4 3 203 77 302 3.47e-39 141
MsG0880046273.01.T01 MTR_3g058000 35.319 235 116 5 1 203 74 304 3.90e-36 133
MsG0880046273.01.T01 MTR_5g018980 34.188 234 123 3 1 203 72 305 1.00e-35 132
MsG0880046273.01.T01 MTR_3g057910 33.047 233 123 3 1 203 73 302 9.90e-34 126
MsG0880046273.01.T01 MTR_5g073250 36.325 234 109 5 1 203 75 299 3.19e-33 125
MsG0880046273.01.T01 MTR_5g094570 34.579 214 101 4 1 184 75 279 3.43e-33 124
MsG0880046273.01.T01 MTR_5g094550 37.156 218 92 5 1 185 75 280 6.61e-33 124
MsG0880046273.01.T01 MTR_3g058250 33.333 234 121 5 1 203 71 300 6.87e-33 124
MsG0880046273.01.T01 MTR_5g070920 35.417 240 108 7 1 203 72 301 9.43e-33 124
MsG0880046273.01.T01 MTR_5g019010 32.906 234 121 5 1 202 72 301 9.98e-33 123
MsG0880046273.01.T01 MTR_3g058110 32.340 235 123 5 1 203 74 304 1.02e-32 123
MsG0880046273.01.T01 MTR_5g070710 35.833 240 106 9 1 203 71 299 1.04e-32 123
MsG0880046273.01.T01 MTR_3g058060 33.191 235 120 5 1 203 74 303 1.05e-32 124
MsG0880046273.01.T01 MTR_5g470730 35.417 240 109 8 1 203 72 302 1.12e-32 122
MsG0880046273.01.T01 MTR_3g058240 32.906 234 122 6 1 203 37 266 1.41e-32 122
MsG0880046273.01.T01 MTR_5g094540 36.744 215 97 4 1 185 75 280 1.64e-32 123
MsG0880046273.01.T01 MTR_8g466180 31.489 235 125 5 1 203 70 300 1.92e-32 122
MsG0880046273.01.T01 MTR_1g035190 32.394 213 111 3 1 184 56 264 2.18e-32 122
MsG0880046273.01.T01 MTR_6g039630 35.135 185 88 3 1 154 70 253 2.52e-32 118
MsG0880046273.01.T01 MTR_4g104640 34.746 236 115 5 1 202 85 315 4.14e-32 122
MsG0880046273.01.T01 MTR_4g048580 34.884 215 101 3 1 185 75 280 4.84e-32 121
MsG0880046273.01.T01 MTR_2g065360 30.962 239 120 6 1 203 42 271 4.94e-32 121
MsG0880046273.01.T01 MTR_5g094560 34.419 215 102 3 1 185 75 280 5.14e-32 121
MsG0880046273.01.T01 MTR_3g057900 35.211 213 102 6 1 181 72 280 5.43e-32 121
MsG0880046273.01.T01 MTR_3g057970 35.211 213 99 6 1 181 69 274 7.87e-32 121
MsG0880046273.01.T01 MTR_3g058390 32.479 234 123 5 1 203 71 300 1.11e-31 120
MsG0880046273.01.T01 MTR_5g094660 34.052 232 114 4 1 202 75 297 2.97e-31 119
MsG0880046273.01.T01 MTR_5g073320 35.043 234 112 5 1 203 76 300 1.20e-30 117
MsG0880046273.01.T01 MTR_3g058230 30.472 233 126 4 1 203 1 227 3.68e-30 115
MsG0880046273.01.T01 MTR_3g076550 33.184 223 107 5 17 203 87 303 6.60e-30 115
MsG0880046273.01.T01 MTR_8g091690 31.646 237 118 7 1 203 63 289 8.08e-30 115
MsG0880046273.01.T01 MTR_3g057980 33.175 211 109 4 1 181 72 280 8.39e-30 115
MsG0880046273.01.T01 MTR_5g070690 33.195 241 113 8 1 203 70 300 8.45e-30 115
MsG0880046273.01.T01 MTR_5g070800 33.195 241 113 8 1 203 70 300 8.45e-30 115
MsG0880046273.01.T01 MTR_1g035140 31.925 213 110 3 1 184 73 279 9.29e-30 115
MsG0880046273.01.T01 MTR_3g057800 30.472 233 127 4 1 203 71 298 1.46e-29 114
MsG0880046273.01.T01 MTR_5g094520 35.349 215 100 3 1 185 1 206 1.53e-29 114
MsG0880046273.01.T01 MTR_5g018990 33.190 232 123 4 1 202 73 302 2.04e-29 114
MsG0880046273.01.T01 MTR_5g070850 33.333 240 114 7 1 203 72 302 2.12e-29 114
MsG0880046273.01.T01 MTR_3g058220 30.472 233 128 4 1 203 72 300 2.80e-29 114
MsG0880046273.01.T01 MTR_5g094520 35.349 215 100 3 1 185 106 311 6.25e-29 113
MsG0880046273.01.T01 MTR_5g094840 29.915 234 125 5 1 203 80 305 6.86e-29 113
MsG0880046273.01.T01 MTR_6g462640 30.043 233 130 5 1 203 71 300 8.83e-29 112
MsG0880046273.01.T01 MTR_1g442730 32.710 214 111 5 1 185 70 279 2.48e-28 111
MsG0880046273.01.T01 MTR_5g070700 32.500 240 116 7 1 203 72 302 3.13e-28 111
MsG0880046273.01.T01 MTR_3g057860 32.051 234 122 5 1 202 72 300 7.00e-28 110
MsG0880046273.01.T01 MTR_3g076560 30.833 240 118 6 1 203 86 314 7.54e-28 110
MsG0880046273.01.T01 MTR_3g058210 31.489 235 124 5 1 203 73 302 8.43e-28 110
MsG0880046273.01.T01 MTR_4g133750 31.760 233 118 4 1 202 75 297 1.04e-27 109
MsG0880046273.01.T01 MTR_6g084770 30.962 239 122 8 1 203 72 303 1.23e-27 109
MsG0880046273.01.T01 MTR_1g023730 30.645 248 122 5 1 203 68 310 4.31e-27 108
MsG0880046273.01.T01 MTR_4g026070 26.778 239 131 5 1 203 65 295 7.76e-27 104
MsG0880046273.01.T01 MTR_6g035100 31.915 235 114 5 1 202 73 294 8.06e-27 107
MsG0880046273.01.T01 MTR_1g023720 29.032 248 126 5 1 203 68 310 1.42e-26 106
MsG0880046273.01.T01 MTR_8g020940 30.126 239 121 7 1 201 71 301 1.71e-26 106
MsG0880046273.01.T01 MTR_4g071710 30.476 210 114 5 2 181 73 280 2.11e-26 106
MsG0880046273.01.T01 MTR_8g020950 30.962 239 119 7 1 201 73 303 2.17e-26 106
MsG0880046273.01.T01 MTR_4g104660 31.646 237 121 4 1 202 81 311 2.26e-26 106
MsG0880046273.01.T01 MTR_0554s0020 32.105 190 99 4 1 160 73 262 2.84e-26 105
MsG0880046273.01.T01 MTR_6g034965 30.901 233 119 4 1 202 73 294 2.92e-26 105
MsG0880046273.01.T01 MTR_0059s0170 30.769 234 126 4 1 203 73 301 7.87e-26 104
MsG0880046273.01.T01 MTR_3g058400 30.769 234 126 6 1 203 73 301 8.30e-26 104
MsG0880046273.01.T01 MTR_8g468780 29.218 243 124 7 1 203 1 235 1.26e-25 103
MsG0880046273.01.T01 MTR_1g023700 27.711 249 128 4 1 203 69 311 3.59e-25 102
MsG0880046273.01.T01 MTR_5g073230 32.683 205 112 6 1 189 78 272 1.51e-24 100
MsG0880046273.01.T01 MTR_0171s0020 30.328 244 120 7 1 203 72 306 1.81e-24 100
MsG0880046273.01.T01 MTR_3g058380 29.464 224 124 5 10 203 1 220 1.85e-24 100
MsG0880046273.01.T01 MTR_5g070980 37.821 156 65 4 1 124 72 227 2.38e-24 96.7
MsG0880046273.01.T01 MTR_5g018480 30.400 250 122 9 3 208 79 320 3.43e-24 97.8
MsG0880046273.01.T01 MTR_4g025950 28.216 241 124 7 3 204 67 297 3.93e-24 97.8
MsG0880046273.01.T01 MTR_5g095260 27.660 188 106 3 1 158 77 264 6.47e-24 99.0
MsG0880046273.01.T01 MTR_7g012330 26.953 256 139 6 1 216 70 317 1.02e-23 98.6
MsG0880046273.01.T01 MTR_4g025970 28.512 242 124 6 1 203 65 296 1.18e-23 98.2
MsG0880046273.01.T01 MTR_5g045770 28.033 239 124 6 3 203 67 295 1.36e-23 98.2
MsG0880046273.01.T01 MTR_3g077460 32.701 211 118 7 1 203 42 236 2.34e-23 96.7
MsG0880046273.01.T01 MTR_5g095290 28.042 189 104 3 1 158 77 264 5.86e-23 96.3
MsG0880046273.01.T01 MTR_4g026050 26.050 238 132 5 1 202 65 294 9.38e-23 95.9
MsG0880046273.01.T01 MTR_5g023680 24.797 246 127 4 1 203 41 271 1.66e-22 95.1
MsG0880046273.01.T01 MTR_2g010530 30.366 191 101 3 1 160 70 259 3.33e-22 94.4
MsG0880046273.01.T01 MTR_4g026200 24.380 242 139 5 1 206 65 298 5.47e-22 93.6
MsG0880046273.01.T01 MTR_8g076290 28.571 217 117 6 2 188 71 279 7.02e-22 93.2
MsG0880046273.01.T01 MTR_7g012860 27.731 238 127 5 3 203 71 300 1.30e-21 92.4
MsG0880046273.01.T01 MTR_0287s0060 27.731 238 127 5 3 203 71 300 1.30e-21 92.4
MsG0880046273.01.T01 MTR_4g133760 31.754 211 118 5 1 202 1 194 2.24e-21 91.3
MsG0880046273.01.T01 MTR_5g094535 39.161 143 71 4 1 127 75 217 2.38e-21 88.6
MsG0880046273.01.T01 MTR_4g109470 30.102 196 93 6 1 154 66 259 2.70e-21 91.7
MsG0880046273.01.T01 MTR_8g012590 28.384 229 127 4 1 200 75 295 3.57e-21 91.3
MsG0880046273.01.T01 MTR_4g088425 29.108 213 106 6 3 181 78 279 5.62e-21 90.9
MsG0880046273.01.T01 MTR_8g104080 33.854 192 84 6 1 157 71 254 6.81e-21 88.6
MsG0880046273.01.T01 MTR_2g450040 28.226 248 121 7 3 204 78 314 8.26e-21 90.5
MsG0880046273.01.T01 MTR_0638s0020 28.986 207 123 7 1 203 42 228 8.96e-21 89.7
MsG0880046273.01.T01 MTR_4g025980 25.366 205 117 2 1 169 66 270 1.34e-20 89.7
MsG0880046273.01.T01 MTR_3g025260 27.179 195 100 4 1 154 67 260 2.05e-20 89.4
MsG0880046273.01.T01 MTR_7g087520 28.750 240 126 7 3 202 74 308 2.54e-20 89.0
MsG0880046273.01.T01 MTR_3g436540 29.167 240 124 7 1 203 75 305 3.22e-20 88.6
MsG0880046273.01.T01 MTR_7g092620 27.895 190 100 3 1 154 69 257 3.23e-20 88.6
MsG0880046273.01.T01 MTR_3g436390 27.386 241 124 7 1 203 71 298 7.12e-20 87.8
MsG0880046273.01.T01 MTR_5g021390 27.397 219 116 7 2 188 80 287 8.91e-20 87.4
MsG0880046273.01.T01 MTR_6g035115 26.178 191 109 3 1 160 73 262 2.97e-19 85.9
MsG0880046273.01.T01 MTR_8g012585 29.317 249 123 8 1 204 9 249 3.00e-19 85.5
MsG0880046273.01.T01 MTR_3g024520 26.396 197 103 3 1 156 67 262 5.50e-19 85.1
MsG0880046273.01.T01 MTR_3g025230 26.396 197 103 3 1 156 67 262 6.59e-19 84.7
MsG0880046273.01.T01 MTR_4g062500 25.417 240 141 5 1 203 70 308 8.49e-19 84.7
MsG0880046273.01.T01 MTR_3g020780 24.895 237 141 4 3 203 72 307 2.33e-18 83.2
MsG0880046273.01.T01 MTR_8g469300 25.926 243 132 6 1 203 70 304 2.79e-18 83.2
MsG0880046273.01.T01 MTR_7g092600 27.083 240 128 7 1 203 74 303 3.22e-18 82.8
MsG0880046273.01.T01 MTR_4g471620 43.373 83 47 0 2 84 73 155 3.74e-18 79.7
MsG0880046273.01.T01 MTR_0171s0010 26.141 241 136 7 1 203 72 308 4.14e-18 82.4
MsG0880046273.01.T01 MTR_4g088400 27.149 221 106 5 5 181 87 296 4.99e-18 82.4
MsG0880046273.01.T01 MTR_5g073240 52.000 75 36 0 1 75 119 193 1.82e-17 77.4
MsG0880046273.01.T01 MTR_5g072980 24.896 241 135 4 1 203 69 301 2.21e-17 80.5
MsG0880046273.01.T01 MTR_5g072930 24.896 241 135 4 1 203 69 301 2.21e-17 80.5
MsG0880046273.01.T01 MTR_4g088415 25.882 255 135 5 3 213 83 327 5.16e-17 79.0
MsG0880046273.01.T01 MTR_5g073020 26.250 240 129 7 3 203 71 301 1.80e-16 77.8
MsG0880046273.01.T01 MTR_5g094670 35.252 139 62 5 1 130 75 194 1.81e-16 76.3
MsG0880046273.01.T01 MTR_7g027960 26.407 231 137 7 3 203 69 296 2.67e-16 77.4
MsG0880046273.01.T01 MTR_7g028020 26.407 231 137 7 3 203 69 296 2.73e-16 77.4
MsG0880046273.01.T01 MTR_4g062510 23.967 242 144 6 1 203 72 312 4.56e-16 76.6
MsG0880046273.01.T01 MTR_1g107305 24.180 244 145 6 1 205 73 315 6.86e-16 75.5
MsG0880046273.01.T01 MTR_6g022450 26.639 244 123 6 1 200 75 306 7.38e-16 75.9
MsG0880046273.01.T01 MTR_7g056103 26.027 219 116 5 1 181 69 279 1.16e-15 75.5
MsG0880046273.01.T01 MTR_5g070830 29.703 202 96 8 39 203 220 412 2.57e-15 74.3
MsG0880046273.01.T01 MTR_8g036185 27.530 247 128 7 1 203 69 308 5.42e-15 73.6
MsG0880046273.01.T01 MTR_1g107295 23.967 242 144 6 1 203 73 313 6.03e-15 73.2
MsG0880046273.01.T01 MTR_4g102280 22.689 238 141 4 2 203 80 310 2.05e-14 71.6
MsG0880046273.01.T01 MTR_5g094460 50.000 68 33 1 1 67 66 133 2.95e-14 70.9
MsG0880046273.01.T01 MTR_6g008600 26.482 253 129 6 3 204 79 325 3.53e-14 71.2
MsG0880046273.01.T01 MTR_2g437840 23.881 201 108 3 3 159 68 267 2.25e-13 68.6
MsG0880046273.01.T01 MTR_3g014880 28.175 252 126 12 3 204 78 324 3.15e-13 68.2
MsG0880046273.01.T01 MTR_4g102310 22.269 238 141 4 2 203 75 304 3.40e-13 68.2
MsG0880046273.01.T01 MTR_5g095220 25.118 211 107 5 1 176 64 258 1.89e-12 65.9
MsG0880046273.01.T01 MTR_4g035330 25.275 182 101 3 5 153 70 249 2.95e-12 65.5
MsG0880046273.01.T01 MTR_2g437880 23.980 196 102 3 5 154 71 265 3.30e-12 65.5
MsG0880046273.01.T01 MTR_3g058150 48.214 56 29 0 1 56 1 56 3.66e-12 59.7
MsG0880046273.01.T01 MTR_6g008530 24.901 253 134 6 3 204 80 327 3.89e-12 65.1
MsG0880046273.01.T01 MTR_0155s0010 34.940 83 54 0 1 83 52 134 8.31e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046273.01.T01 AT3G48300 44.206 233 88 5 1 203 64 284 4.05e-55 182
MsG0880046273.01.T01 AT3G48300 44.206 233 88 5 1 203 66 286 4.21e-55 182
MsG0880046273.01.T01 AT3G48320 46.154 234 82 6 1 203 67 287 1.07e-54 182
MsG0880046273.01.T01 AT3G48270 43.348 233 90 5 1 203 66 286 1.37e-54 181
MsG0880046273.01.T01 AT3G48280 43.777 233 90 6 1 203 65 286 2.05e-52 176
MsG0880046273.01.T01 AT3G48310 44.255 235 85 6 1 203 67 287 3.47e-52 175
MsG0880046273.01.T01 AT3G48290 40.496 242 102 5 1 212 68 297 8.16e-52 175
MsG0880046273.01.T01 AT3G48290 41.631 233 94 5 1 203 68 288 2.23e-51 173
MsG0880046273.01.T01 AT2G30770 36.555 238 104 4 1 203 68 293 6.83e-46 159
MsG0880046273.01.T01 AT2G30750 37.815 238 101 4 1 203 68 293 1.90e-45 157
MsG0880046273.01.T01 AT1G11610 35.294 238 107 3 1 203 68 293 3.07e-42 149
MsG0880046273.01.T01 AT1G11610 35.294 238 107 3 1 203 68 293 3.25e-42 149
MsG0880046273.01.T01 AT5G24960 36.975 238 104 5 1 203 68 294 3.49e-41 144
MsG0880046273.01.T01 AT5G24960 36.975 238 104 5 1 203 68 294 2.91e-40 144
MsG0880046273.01.T01 AT5G24950 34.874 238 109 4 1 203 67 293 4.25e-39 140
MsG0880046273.01.T01 AT4G13310 33.852 257 119 6 1 217 67 312 3.99e-38 136
MsG0880046273.01.T01 AT5G42590 35.833 240 105 4 1 203 67 294 9.13e-38 137
MsG0880046273.01.T01 AT4G13310 33.852 257 119 6 1 217 67 312 2.85e-37 135
MsG0880046273.01.T01 AT4G13290 33.333 225 102 4 1 188 68 281 7.89e-33 124
MsG0880046273.01.T01 AT4G20235 40.828 169 86 5 13 169 82 248 1.16e-32 120
MsG0880046273.01.T01 AT4G20240 31.325 249 119 6 1 214 68 299 4.38e-31 117
MsG0880046273.01.T01 AT4G20240 31.325 249 119 6 1 214 68 299 1.86e-30 117
MsG0880046273.01.T01 AT3G53280 29.358 218 107 4 1 181 63 270 1.56e-24 100
MsG0880046273.01.T01 AT5G07990 29.218 243 119 7 1 203 68 297 1.75e-24 100
MsG0880046273.01.T01 AT1G13110 31.111 225 108 6 1 187 67 282 1.76e-23 97.8
MsG0880046273.01.T01 AT3G44250 29.680 219 102 7 3 181 65 271 4.67e-23 96.7
MsG0880046273.01.T01 AT5G04330 28.829 222 117 6 1 187 67 282 3.97e-22 94.0
MsG0880046273.01.T01 AT5G25120 28.216 241 123 9 1 203 64 292 4.48e-22 94.0
MsG0880046273.01.T01 AT5G25140 27.615 239 123 7 3 203 66 292 1.01e-21 92.8
MsG0880046273.01.T01 AT3G26210 48.315 89 46 0 1 89 66 154 2.03e-21 92.0
MsG0880046273.01.T01 AT3G26190 29.075 227 112 7 1 188 63 279 2.11e-21 92.0
MsG0880046273.01.T01 AT1G13090 50.000 86 43 0 3 88 65 150 3.08e-21 89.7
MsG0880046273.01.T01 AT5G25180 25.311 241 130 7 1 203 64 292 6.84e-21 90.5
MsG0880046273.01.T01 AT2G24180 26.860 242 128 7 1 203 71 302 7.24e-21 90.5
MsG0880046273.01.T01 AT1G13090 50.602 83 41 0 3 85 65 147 1.49e-20 89.7
MsG0880046273.01.T01 AT4G36220 25.654 191 107 4 2 160 76 263 1.67e-20 89.4
MsG0880046273.01.T01 AT5G57260 25.207 242 132 6 1 203 65 296 2.05e-20 89.4
MsG0880046273.01.T01 AT3G26170 30.097 206 104 5 1 166 65 270 3.95e-20 88.6
MsG0880046273.01.T01 AT3G26310 25.620 242 130 6 1 203 65 295 4.55e-20 88.2
MsG0880046273.01.T01 AT3G26180 30.583 206 103 5 1 166 65 270 4.79e-20 88.2
MsG0880046273.01.T01 AT4G31970 29.258 229 107 5 1 181 70 291 7.60e-20 87.8
MsG0880046273.01.T01 AT1G13100 28.708 209 104 5 3 169 62 267 7.94e-20 87.4
MsG0880046273.01.T01 AT3G26160 30.081 246 116 8 1 202 65 298 9.68e-20 87.4
MsG0880046273.01.T01 AT3G26300 25.620 242 130 5 1 203 66 296 1.13e-19 87.0
MsG0880046273.01.T01 AT5G25130 26.702 191 104 4 1 155 64 254 1.28e-19 87.0
MsG0880046273.01.T01 AT3G26320 26.939 245 123 9 1 203 66 296 1.80e-19 86.7
MsG0880046273.01.T01 AT1G13080 31.579 209 97 5 3 168 68 273 3.35e-19 85.9
MsG0880046273.01.T01 AT3G26290 26.446 242 128 6 1 203 79 309 3.41e-19 85.9
MsG0880046273.01.T01 AT3G26290 26.446 242 128 6 1 203 66 296 3.86e-19 85.5
MsG0880046273.01.T01 AT5G06900 26.971 241 128 4 1 203 69 299 7.43e-19 84.7
MsG0880046273.01.T01 AT3G26280 30.000 220 105 6 1 181 67 276 9.77e-19 84.3
MsG0880046273.01.T01 AT3G26280 30.000 220 105 6 1 181 84 293 1.00e-18 84.3
MsG0880046273.01.T01 AT3G26330 26.033 242 129 6 1 203 66 296 1.54e-18 84.0
MsG0880046273.01.T01 AT1G01280 28.636 220 109 6 3 181 69 281 5.07e-18 82.4
MsG0880046273.01.T01 AT4G22710 24.066 241 135 7 1 203 89 319 1.34e-17 81.3
MsG0880046273.01.T01 AT4G13770 24.896 241 132 7 1 203 66 295 1.45e-17 80.9
MsG0880046273.01.T01 AT4G22690 24.066 241 135 7 1 203 120 350 1.67e-17 80.9
MsG0880046273.01.T01 AT3G26200 28.194 227 114 8 1 188 63 279 2.43e-17 80.5
MsG0880046273.01.T01 AT5G67310 26.556 241 125 8 3 204 80 307 3.29e-17 80.1
MsG0880046273.01.T01 AT3G26230 30.088 226 113 8 3 190 63 281 6.61e-17 79.0
MsG0880046273.01.T01 AT3G26270 41.176 102 54 1 1 102 67 162 9.09e-17 78.6
MsG0880046273.01.T01 AT4G31940 27.391 230 111 6 1 181 70 292 1.34e-16 78.2
MsG0880046273.01.T01 AT3G26220 26.400 250 129 8 3 206 66 306 1.38e-16 78.2
MsG0880046273.01.T01 AT3G26150 29.864 221 105 6 1 181 65 275 1.63e-16 77.8
MsG0880046273.01.T01 AT4G12300 27.801 241 126 7 1 202 77 308 3.13e-16 77.0
MsG0880046273.01.T01 AT4G37310 28.571 196 96 4 2 154 68 262 8.43e-16 75.9
MsG0880046273.01.T01 AT4G37340 27.632 228 110 7 1 187 68 281 2.32e-15 74.7
MsG0880046273.01.T01 AT3G53305 41.573 89 52 0 1 89 1 89 3.65e-15 73.6
MsG0880046273.01.T01 AT3G26830 40.698 86 51 0 3 88 65 150 6.53e-15 73.2
MsG0880046273.01.T01 AT3G53300 41.667 84 49 0 6 89 68 151 4.39e-14 70.9
MsG0880046273.01.T01 AT2G23220 25.893 224 117 6 3 181 86 305 6.33e-14 70.5
MsG0880046273.01.T01 AT2G02580 27.755 245 121 9 1 203 66 296 2.27e-13 68.9
MsG0880046273.01.T01 AT5G10610 35.354 99 62 1 3 101 70 166 6.24e-13 67.4
MsG0880046273.01.T01 AT5G10600 33.333 108 72 0 3 110 84 191 8.00e-13 67.0
MsG0880046273.01.T01 AT2G40890 25.000 252 124 9 5 200 66 308 1.03e-12 67.0
MsG0880046273.01.T01 AT5G35715 37.079 89 56 0 1 89 1 89 1.30e-12 66.6
MsG0880046273.01.T01 AT2G23190 25.893 224 117 7 3 181 115 334 4.90e-12 65.1
MsG0880046273.01.T01 AT1G50560 24.380 242 134 7 1 203 79 310 2.02e-11 63.2

Find 36 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGGATGACCAATGTTTC+TGG 0.209245 8:-71373689 MsG0880046273.01.T01:CDS
AGTCATTAAGGCCTTGTTAT+TGG 0.264045 8:-71373471 MsG0880046273.01.T01:CDS
ACTATGTTCCTTGGCTTGAT+TGG 0.284214 8:-71373706 MsG0880046273.01.T01:CDS
TAAACAGTTTGATGATCTTT+TGG 0.292425 8:-71373639 MsG0880046273.01.T01:CDS
TACAATCATATAAAAGTATA+TGG 0.328580 8:+71374039 None:intergenic
ATTATCTCACTTGCTGCTTC+AGG 0.349803 8:+71374110 None:intergenic
TATTGACAGAACAGTCATTA+AGG 0.354605 8:-71373483 MsG0880046273.01.T01:CDS
CCTTTAATGCAACTCCATCT+TGG 0.369942 8:-71374161 None:intergenic
TTAATGACTGTTCTGTCAAT+AGG 0.371315 8:+71373485 None:intergenic
TATTGTTTGTAGGGTTGCTT+TGG 0.383227 8:-71373811 MsG0880046273.01.T01:intron
GCCGTTAGAGAGGAAGAAAT+TGG 0.388876 8:-71373918 MsG0880046273.01.T01:intron
AACCTAGGGATTCTGTCCTT+TGG 0.396509 8:+71373510 None:intergenic
ATTGTTTGTAGGGTTGCTTT+GGG 0.403402 8:-71373810 MsG0880046273.01.T01:intron
CTTTAATGCAACTCCATCTT+GGG 0.405656 8:-71374160 None:intergenic
AGAAAGTATAGTGGTGAAAG+TGG 0.435166 8:-71373786 MsG0880046273.01.T01:CDS
ACCAATTTCTTCCTCTCTAA+CGG 0.458178 8:+71373917 None:intergenic
TGTCTCCAATACTCTCCATA+TGG 0.463829 8:+71373999 None:intergenic
CTGCTCCATATGGAGAGTAT+TGG 0.474577 8:-71374004 MsG0880046273.01.T01:CDS
GATGTTTCAACTGCTCCATA+TGG 0.475946 8:-71374014 MsG0880046273.01.T01:CDS
GGTGATGAGATTATAAGAAC+TGG 0.479349 8:+71374131 None:intergenic
TTGTTGGTGACTATGTTCCT+TGG 0.479480 8:-71373715 MsG0880046273.01.T01:CDS
ATATGGTAAAGTTTAGTTTG+AGG 0.502054 8:+71374056 None:intergenic
GATCATATCAATCGTCAGAA+AGG 0.507553 8:-71373602 MsG0880046273.01.T01:CDS
TGCATAAAATCCAGAAACAT+TGG 0.523487 8:+71373679 None:intergenic
GAAAGTATAGTGGTGAAAGT+GGG 0.558562 8:-71373785 MsG0880046273.01.T01:CDS
TATAGTGGTGAAAGTGGGAA+GGG 0.564843 8:-71373780 MsG0880046273.01.T01:CDS
TTGTTTGTAGGGTTGCTTTG+GGG 0.567701 8:-71373809 MsG0880046273.01.T01:intron
GCTTTGGGGAGAAAGTATAG+TGG 0.570317 8:-71373795 MsG0880046273.01.T01:CDS
TTCTGTCAATAGGAAAACCT+AGG 0.583897 8:+71373495 None:intergenic
GAACTGGTACACTCCCAAGA+TGG 0.593068 8:+71374147 None:intergenic
GTATAGTGGTGAAAGTGGGA+AGG 0.596303 8:-71373781 MsG0880046273.01.T01:CDS
ATCTCTTCGAGCCGTTAGAG+AGG 0.607997 8:-71373928 MsG0880046273.01.T01:CDS
TTGGTCATCCAATCAAGCCA+AGG 0.637668 8:+71373698 None:intergenic
TCTGTCAATAGGAAAACCTA+GGG 0.657959 8:+71373496 None:intergenic
ATCCAAAGGACAGAATCCCT+AGG 0.678330 8:-71373512 MsG0880046273.01.T01:CDS
AAACATCAACAAAGTCACGT+TGG 0.706566 8:+71373543 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATCATATAAAAGTATA+TGG + Chr8:71373546-71373565 None:intergenic 15.0%
!! TATCAATGATATTGTTTGTA+GGG - Chr8:71373762-71373781 MsG0880046273.01.T01:CDS 20.0%
!! TATTTAAAAACTGAGTTACT+TGG - Chr8:71373836-71373855 MsG0880046273.01.T01:intron 20.0%
! AGAAAATCACTTATATTCAC+CGG + Chr8:71373733-71373752 None:intergenic 25.0%
! CTATCAATGATATTGTTTGT+AGG - Chr8:71373761-71373780 MsG0880046273.01.T01:CDS 25.0%
!! AACAATATCATTGATAGTTG+TGG + Chr8:71373758-71373777 None:intergenic 25.0%
!! AATCTCTATATTTTGCTTTG+TGG - Chr8:71374149-71374168 MsG0880046273.01.T01:CDS 25.0%
!! TTTTACACTTACCAATAACA+AGG + Chr8:71374125-71374144 None:intergenic 25.0%
!!! ATATGGTAAAGTTTAGTTTG+AGG + Chr8:71373529-71373548 None:intergenic 25.0%
!!! TAAACAGTTTGATGATCTTT+TGG - Chr8:71373943-71373962 MsG0880046273.01.T01:CDS 25.0%
TATATTCACCGGTAAAGATT+TGG + Chr8:71373722-71373741 None:intergenic 30.0%
TATTGACAGAACAGTCATTA+AGG - Chr8:71374099-71374118 MsG0880046273.01.T01:CDS 30.0%
TGCATAAAATCCAGAAACAT+TGG + Chr8:71373906-71373925 None:intergenic 30.0%
TTAATGACTGTTCTGTCAAT+AGG + Chr8:71374100-71374119 None:intergenic 30.0%
! ACTTTGTTGATGTTTTGCTT+TGG - Chr8:71374047-71374066 MsG0880046273.01.T01:CDS 30.0%
! GGAAGAAATTGGTTTAATGA+TGG - Chr8:71373675-71373694 MsG0880046273.01.T01:CDS 30.0%
! GTAAAGATTTGGAACAACAA+TGG + Chr8:71373711-71373730 None:intergenic 30.0%
! TTGTTGTTCCAAATCTTTAC+CGG - Chr8:71373711-71373730 MsG0880046273.01.T01:CDS 30.0%
!! TTACTTGGTACTTTTGTTGT+TGG - Chr8:71373851-71373870 MsG0880046273.01.T01:intron 30.0%
AAACATCAACAAAGTCACGT+TGG + Chr8:71374042-71374061 None:intergenic 35.0%
ACCAATTTCTTCCTCTCTAA+CGG + Chr8:71373668-71373687 None:intergenic 35.0%
GATCATATCAATCGTCAGAA+AGG - Chr8:71373980-71373999 MsG0880046273.01.T01:CDS 35.0%
GGTGATGAGATTATAAGAAC+TGG + Chr8:71373454-71373473 None:intergenic 35.0%
TATTGTTTGTAGGGTTGCTT+TGG - Chr8:71373771-71373790 MsG0880046273.01.T01:CDS 35.0%
TCTGTCAATAGGAAAACCTA+GGG + Chr8:71374089-71374108 None:intergenic 35.0%
TTCTGTCAATAGGAAAACCT+AGG + Chr8:71374090-71374109 None:intergenic 35.0%
! AGAAAGTATAGTGGTGAAAG+TGG - Chr8:71373796-71373815 MsG0880046273.01.T01:CDS 35.0%
! ATTGTTTGTAGGGTTGCTTT+GGG - Chr8:71373772-71373791 MsG0880046273.01.T01:CDS 35.0%
! GAAAGTATAGTGGTGAAAGT+GGG - Chr8:71373797-71373816 MsG0880046273.01.T01:CDS 35.0%
!! ACAGTTTGATGATCTTTTGG+AGG - Chr8:71373946-71373965 MsG0880046273.01.T01:CDS 35.0%
!! AGTCATTAAGGCCTTGTTAT+TGG - Chr8:71374111-71374130 MsG0880046273.01.T01:CDS 35.0%
!! ATGTTTTGCTTTGGATCCAA+AGG - Chr8:71374056-71374075 MsG0880046273.01.T01:CDS 35.0%
GATGTTTCAACTGCTCCATA+TGG - Chr8:71373568-71373587 MsG0880046273.01.T01:CDS 40.0%
GATTGGATGACCAATGTTTC+TGG - Chr8:71373893-71373912 MsG0880046273.01.T01:intron 40.0%
TATAGTGGTGAAAGTGGGAA+GGG - Chr8:71373802-71373821 MsG0880046273.01.T01:CDS 40.0%
TGTCTCCAATACTCTCCATA+TGG + Chr8:71373586-71373605 None:intergenic 40.0%
! ACTATGTTCCTTGGCTTGAT+TGG - Chr8:71373876-71373895 MsG0880046273.01.T01:intron 40.0%
! ATTATCTCACTTGCTGCTTC+AGG + Chr8:71373475-71373494 None:intergenic 40.0%
! TTGTTTGTAGGGTTGCTTTG+GGG - Chr8:71373773-71373792 MsG0880046273.01.T01:CDS 40.0%
!! TTGTTGGTGACTATGTTCCT+TGG - Chr8:71373867-71373886 MsG0880046273.01.T01:intron 40.0%
AACCTAGGGATTCTGTCCTT+TGG + Chr8:71374075-71374094 None:intergenic 45.0%
ATCCAAAGGACAGAATCCCT+AGG - Chr8:71374070-71374089 MsG0880046273.01.T01:CDS 45.0%
GCCGTTAGAGAGGAAGAAAT+TGG - Chr8:71373664-71373683 MsG0880046273.01.T01:CDS 45.0%
GTATAGTGGTGAAAGTGGGA+AGG - Chr8:71373801-71373820 MsG0880046273.01.T01:CDS 45.0%
TTGGTCATCCAATCAAGCCA+AGG + Chr8:71373887-71373906 None:intergenic 45.0%
! CTGCTCCATATGGAGAGTAT+TGG - Chr8:71373578-71373597 MsG0880046273.01.T01:CDS 45.0%
!! GCTTTGGGGAGAAAGTATAG+TGG - Chr8:71373787-71373806 MsG0880046273.01.T01:CDS 45.0%
ATCTCTTCGAGCCGTTAGAG+AGG - Chr8:71373654-71373673 MsG0880046273.01.T01:CDS 50.0%
GAACTGGTACACTCCCAAGA+TGG + Chr8:71373438-71373457 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
Chr8 gene 71373427 71374177 71373427 ID=MsG0880046273.01;Name=MsG0880046273.01
Chr8 mRNA 71373427 71374177 71373427 ID=MsG0880046273.01.T01;Parent=MsG0880046273.01;Name=MsG0880046273.01.T01;_AED=0.47;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|217
Chr8 exon 71373919 71374177 71373919 ID=MsG0880046273.01.T01:exon:27803;Parent=MsG0880046273.01.T01
Chr8 exon 71373427 71373821 71373427 ID=MsG0880046273.01.T01:exon:27802;Parent=MsG0880046273.01.T01
Chr8 CDS 71373919 71374177 71373919 ID=MsG0880046273.01.T01:cds;Parent=MsG0880046273.01.T01
Chr8 CDS 71373427 71373821 71373427 ID=MsG0880046273.01.T01:cds;Parent=MsG0880046273.01.T01
Gene Sequence

>MsG0880046273.01.T01

ATGCAACTCCATCTTGGGAGTGTACCAGTTCTTATAATCTCATCACCTGAAGCAGCAAGTGAGATAATGAAAACTCATGATCGTGTTTTTGCAAACAGACCTCAAACTAAACTTTACCATATACTTTTATATGATTGTAAAGATGTTTCAACTGCTCCATATGGAGAGTATTGGAGACAGATAAGAAGCATCTCAGTTTTACATCTTCTCAGTGCTAAAAGAGTTCAATCTCTTCGAGCCGTTAGAGAGGAAGAAATTGGGTTGCTTTGGGGAGAAAGTATAGTGGTGAAAGTGGGAAGGGATTTAAAAAGTTATTTAAAAACTGAGTTACTTGGTACTTTTGTTGTTGGTGACTATGTTCCTTGGCTTGATTGGATGACCAATGTTTCTGGATTTTATGCAAGAGCAAAAAAAGTTGCTAAACAGTTTGATGATCTTTTGGAGGATGTAGTTGAAGATCATATCAATCGTCAGAAAGGAGCTAGTGATGAGCAAGTTTGTTTAGATACTGAAGACCAACGTGACTTTGTTGATGTTTTGCTTTGGATCCAAAGGACAGAATCCCTAGGTTTTCCTATTGACAGAACAGTCATTAAGGCCTTGTTATTGGTAAGTGTAAAACTAAAATCTCTATATTTTGCTTTGTGGAGCTAA

Protein sequence

>MsG0880046273.01.T01

MQLHLGSVPVLIISSPEAASEIMKTHDRVFANRPQTKLYHILLYDCKDVSTAPYGEYWRQIRSISVLHLLSAKRVQSLRAVREEEIGLLWGESIVVKVGRDLKSYLKTELLGTFVVGDYVPWLDWMTNVSGFYARAKKVAKQFDDLLEDVVEDHINRQKGASDEQVCLDTEDQRDFVDVLLWIQRTESLGFPIDRTVIKALLLVSVKLKSLYFALWS*