Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007476.01.T01 | XP_013441647.1 | 87.94 | 199 | 23 | 1 | 1 | 199 | 200 | 397 | 4.88E-120 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007476.01.T01 | Q9SU30 | 39.103 | 156 | 84 | 2 | 3 | 158 | 203 | 347 | 4.48E-31 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007476.01.T01 | A0A072TE54 | 87.940 | 199 | 23 | 1 | 1 | 199 | 200 | 397 | 2.33e-120 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000178.01 | MsG0280007476.01 | 0.811155 | 8.066289e-51 | 4.955781e-48 |
| MsG0180003669.01 | MsG0280007476.01 | 0.819349 | 1.217134e-52 | 9.342006e-50 |
| MsG0180005664.01 | MsG0280007476.01 | 0.809854 | 1.540304e-50 | 9.143843e-48 |
| MsG0280007476.01 | MsG0280011156.01 | 0.804581 | 2.016791e-49 | 1.043701e-46 |
| MsG0280007476.01 | MsG0380012471.01 | 0.811886 | 5.594404e-51 | 3.504079e-48 |
| MsG0280007476.01 | MsG0380013834.01 | 0.800201 | 1.610663e-48 | 7.454424e-46 |
| MsG0280007476.01 | MsG0380015677.01 | 0.804830 | 1.789026e-49 | 9.318627e-47 |
| MsG0280007476.01 | MsG0480018163.01 | 0.809616 | 1.732407e-50 | 1.022080e-47 |
| MsG0280007476.01 | MsG0480018206.01 | 0.801102 | 1.054642e-48 | 4.994447e-46 |
| MsG0280007476.01 | MsG0480021274.01 | 0.812036 | 5.189618e-51 | 3.263729e-48 |
| MsG0280007476.01 | MsG0480023707.01 | 0.824692 | 7.033558e-54 | 6.276704e-51 |
| MsG0280007476.01 | MsG0580027745.01 | 0.800996 | 1.109111e-48 | 5.238319e-46 |
| MsG0280007476.01 | MsG0680035692.01 | 0.806404 | 8.363375e-50 | 4.535348e-47 |
| MsG0280007476.01 | MsG0780036477.01 | 0.834507 | 2.879562e-56 | 3.424572e-53 |
| MsG0280007476.01 | MsG0780040057.01 | 0.835992 | 1.215075e-56 | 1.510802e-53 |
| MsG0280007476.01 | MsG0780041559.01 | 0.816327 | 5.855467e-52 | 4.136707e-49 |
| MsG0280007476.01 | MsG0880042232.01 | 0.808523 | 2.970660e-50 | 1.702358e-47 |
| MsG0280007476.01 | MsG0880044574.01 | 0.818052 | 2.396580e-52 | 1.774887e-49 |
| MsG0280007476.01 | MsG0880046012.01 | 0.813325 | 2.710442e-51 | 1.764617e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007476.01.T01 | MTR_0667s0010 | 87.940 | 199 | 23 | 1 | 1 | 199 | 200 | 397 | 5.91e-124 | 358 |
| MsG0280007476.01.T01 | MTR_2g024100 | 73.232 | 198 | 51 | 1 | 2 | 197 | 203 | 400 | 7.38e-101 | 299 |
| MsG0280007476.01.T01 | MTR_2g426070 | 71.859 | 199 | 43 | 3 | 1 | 199 | 213 | 398 | 8.25e-94 | 281 |
| MsG0280007476.01.T01 | MTR_2g028130 | 70.202 | 198 | 56 | 3 | 1 | 197 | 211 | 406 | 7.75e-92 | 276 |
| MsG0280007476.01.T01 | MTR_2g426090 | 69.154 | 201 | 50 | 2 | 1 | 201 | 209 | 397 | 1.45e-91 | 275 |
| MsG0280007476.01.T01 | MTR_2g425980 | 65.278 | 216 | 63 | 2 | 1 | 216 | 206 | 409 | 1.18e-90 | 273 |
| MsG0280007476.01.T01 | MTR_2g426020 | 68.342 | 199 | 55 | 2 | 1 | 199 | 207 | 397 | 1.38e-90 | 273 |
| MsG0280007476.01.T01 | MTR_2g025960 | 67.337 | 199 | 59 | 2 | 1 | 199 | 115 | 307 | 4.12e-90 | 268 |
| MsG0280007476.01.T01 | MTR_2g025420 | 68.657 | 201 | 59 | 3 | 1 | 199 | 214 | 412 | 2.43e-88 | 268 |
| MsG0280007476.01.T01 | MTR_2g031640 | 66.169 | 201 | 57 | 4 | 3 | 200 | 189 | 381 | 3.34e-86 | 261 |
| MsG0280007476.01.T01 | MTR_2g031680 | 65.482 | 197 | 61 | 1 | 3 | 199 | 188 | 377 | 3.41e-86 | 261 |
| MsG0280007476.01.T01 | MTR_8g099460 | 69.634 | 191 | 45 | 3 | 1 | 191 | 201 | 378 | 6.39e-86 | 261 |
| MsG0280007476.01.T01 | MTR_2g037520 | 79.739 | 153 | 26 | 1 | 11 | 163 | 1 | 148 | 9.56e-84 | 247 |
| MsG0280007476.01.T01 | MTR_2g028110 | 65.482 | 197 | 52 | 3 | 1 | 197 | 196 | 376 | 9.84e-84 | 254 |
| MsG0280007476.01.T01 | MTR_2g021050 | 63.636 | 209 | 59 | 4 | 1 | 199 | 178 | 379 | 1.66e-82 | 251 |
| MsG0280007476.01.T01 | MTR_3g083010 | 64.532 | 203 | 64 | 5 | 1 | 199 | 216 | 414 | 4.32e-82 | 251 |
| MsG0280007476.01.T01 | MTR_2g426060 | 65.000 | 200 | 60 | 3 | 1 | 199 | 207 | 397 | 1.13e-81 | 250 |
| MsG0280007476.01.T01 | MTR_2g028160 | 64.500 | 200 | 66 | 4 | 1 | 197 | 211 | 408 | 2.26e-81 | 249 |
| MsG0280007476.01.T01 | MTR_1g068835 | 65.990 | 197 | 52 | 5 | 1 | 197 | 188 | 369 | 5.11e-79 | 242 |
| MsG0280007476.01.T01 | MTR_2g031720 | 60.697 | 201 | 68 | 3 | 3 | 199 | 191 | 384 | 5.19e-79 | 243 |
| MsG0280007476.01.T01 | MTR_1g068875 | 64.975 | 197 | 54 | 5 | 1 | 197 | 187 | 368 | 3.43e-77 | 238 |
| MsG0280007476.01.T01 | MTR_2g028140 | 61.692 | 201 | 66 | 4 | 1 | 199 | 215 | 406 | 4.85e-76 | 236 |
| MsG0280007476.01.T01 | MTR_2g026010 | 60.952 | 210 | 62 | 5 | 1 | 199 | 186 | 386 | 1.22e-75 | 234 |
| MsG0280007476.01.T01 | MTR_1g068860 | 61.616 | 198 | 60 | 6 | 1 | 197 | 189 | 371 | 1.05e-72 | 226 |
| MsG0280007476.01.T01 | MTR_4g070550 | 55.224 | 201 | 78 | 5 | 1 | 198 | 209 | 400 | 4.40e-63 | 202 |
| MsG0280007476.01.T01 | MTR_2g025440 | 70.992 | 131 | 37 | 1 | 67 | 197 | 1 | 130 | 3.33e-61 | 192 |
| MsG0280007476.01.T01 | MTR_2g024110 | 54.211 | 190 | 76 | 4 | 1 | 185 | 187 | 370 | 6.09e-60 | 193 |
| MsG0280007476.01.T01 | MTR_4g006270 | 41.633 | 245 | 117 | 7 | 1 | 227 | 166 | 402 | 5.12e-51 | 171 |
| MsG0280007476.01.T01 | MTR_4g133170 | 41.667 | 204 | 100 | 4 | 1 | 199 | 190 | 379 | 1.18e-41 | 146 |
| MsG0280007476.01.T01 | MTR_3g086960 | 51.948 | 154 | 60 | 6 | 34 | 182 | 9 | 153 | 6.74e-38 | 130 |
| MsG0280007476.01.T01 | MTR_1g068905 | 44.974 | 189 | 43 | 5 | 9 | 197 | 179 | 306 | 2.08e-36 | 130 |
| MsG0280007476.01.T01 | MTR_7g110360 | 64.646 | 99 | 34 | 1 | 84 | 181 | 222 | 320 | 5.56e-35 | 127 |
| MsG0280007476.01.T01 | MTR_7g110370 | 72.000 | 75 | 18 | 1 | 62 | 133 | 23 | 97 | 3.39e-28 | 107 |
| MsG0280007476.01.T01 | MTR_2g031700 | 73.438 | 64 | 16 | 1 | 136 | 199 | 227 | 289 | 2.63e-24 | 98.6 |
| MsG0280007476.01.T01 | MTR_2g031700 | 71.739 | 46 | 13 | 0 | 3 | 48 | 188 | 233 | 6.10e-15 | 72.8 |
| MsG0280007476.01.T01 | MTR_2g028120 | 57.831 | 83 | 26 | 3 | 119 | 200 | 5 | 79 | 2.63e-22 | 87.4 |
| MsG0280007476.01.T01 | MTR_2g040050 | 42.308 | 130 | 43 | 4 | 1 | 124 | 138 | 241 | 1.61e-19 | 84.7 |
| MsG0280007476.01.T01 | MTR_5g083940 | 39.752 | 161 | 64 | 5 | 3 | 161 | 145 | 274 | 1.20e-18 | 83.6 |
| MsG0280007476.01.T01 | MTR_3g010390 | 36.111 | 108 | 61 | 2 | 3 | 107 | 233 | 335 | 2.62e-15 | 74.7 |
| MsG0280007476.01.T01 | MTR_3g436150 | 38.947 | 95 | 50 | 2 | 14 | 107 | 244 | 331 | 2.77e-13 | 68.9 |
| MsG0280007476.01.T01 | MTR_8g054320 | 37.383 | 107 | 56 | 3 | 1 | 107 | 142 | 237 | 5.80e-13 | 67.4 |
| MsG0280007476.01.T01 | MTR_3g014570 | 34.127 | 126 | 68 | 4 | 12 | 134 | 229 | 342 | 1.00e-12 | 67.0 |
| MsG0280007476.01.T01 | MTR_3g010920 | 28.177 | 181 | 110 | 6 | 1 | 179 | 220 | 382 | 2.07e-12 | 66.2 |
| MsG0280007476.01.T01 | MTR_7g407070 | 34.259 | 108 | 65 | 2 | 1 | 107 | 235 | 337 | 3.93e-12 | 65.5 |
| MsG0280007476.01.T01 | MTR_3g024130 | 27.869 | 183 | 106 | 7 | 1 | 179 | 155 | 315 | 6.52e-12 | 64.3 |
| MsG0280007476.01.T01 | MTR_3g009300 | 29.255 | 188 | 103 | 8 | 1 | 181 | 191 | 355 | 6.59e-12 | 64.7 |
| MsG0280007476.01.T01 | MTR_3g006670 | 38.542 | 96 | 48 | 3 | 12 | 107 | 252 | 336 | 1.36e-11 | 63.9 |
| MsG0280007476.01.T01 | MTR_3g036290 | 27.473 | 182 | 110 | 4 | 1 | 181 | 199 | 359 | 1.86e-11 | 63.2 |
| MsG0280007476.01.T01 | MTR_2g046900 | 28.249 | 177 | 103 | 8 | 11 | 181 | 229 | 387 | 2.96e-11 | 62.8 |
| MsG0280007476.01.T01 | MTR_2g021150 | 28.571 | 175 | 108 | 6 | 7 | 179 | 210 | 369 | 3.55e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007476.01.T01 | AT4G12560 | 39.103 | 156 | 84 | 2 | 3 | 158 | 203 | 347 | 4.56e-32 | 121 |
| MsG0280007476.01.T01 | AT4G12560 | 39.103 | 156 | 84 | 2 | 3 | 158 | 203 | 347 | 4.56e-32 | 121 |
| MsG0280007476.01.T01 | AT4G12560 | 39.103 | 156 | 84 | 2 | 3 | 158 | 203 | 347 | 4.56e-32 | 121 |
| MsG0280007476.01.T01 | AT4G22390 | 28.205 | 156 | 99 | 3 | 3 | 158 | 202 | 344 | 1.56e-14 | 72.4 |
| MsG0280007476.01.T01 | AT4G22390 | 28.205 | 156 | 99 | 3 | 3 | 158 | 202 | 344 | 1.64e-14 | 72.4 |
Find 49 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGATTCATCTTGAAAAT+AGG | 0.226863 | 2:-15976899 | MsG0280007476.01.T01:CDS |
| CCTTTCCTGTTGATAATTCT+AGG | 0.232558 | 2:-15977742 | MsG0280007476.01.T01:CDS |
| TTGAAATCATCGAGTCCTTT+AGG | 0.298029 | 2:-15977935 | MsG0280007476.01.T01:CDS |
| TACATTATAAGAAGCTGTTT+TGG | 0.323999 | 2:-15977856 | MsG0280007476.01.T01:CDS |
| GAATTCTATTCACTGGATAA+TGG | 0.344998 | 2:-15978233 | MsG0280007476.01.T01:CDS |
| CATTGAAAATCTCAAGTGTT+AGG | 0.348222 | 2:+15978164 | None:intergenic |
| GAACAAGTTAGTTATGTTGA+TGG | 0.358267 | 2:-15977818 | MsG0280007476.01.T01:CDS |
| GTTTGGGTGATGAAAGAATA+TGG | 0.365045 | 2:-15978016 | MsG0280007476.01.T01:CDS |
| TGAAATTGATGTTGCTGCTT+TGG | 0.366017 | 2:-15978086 | MsG0280007476.01.T01:CDS |
| GAAATTGATGTTGCTGCTTT+GGG | 0.366162 | 2:-15978085 | MsG0280007476.01.T01:CDS |
| GGTTTGCATGCTTGTTCAAA+TGG | 0.395399 | 2:-15976878 | MsG0280007476.01.T01:CDS |
| TAGTTCTACATTCTTGCTGT+TGG | 0.395817 | 2:-15976917 | MsG0280007476.01.T01:CDS |
| ATACTACTAAAATTGATGTT+TGG | 0.396454 | 2:-15978033 | MsG0280007476.01.T01:CDS |
| CCTTGTCTTTGCTCAAACCA+TGG | 0.397159 | 2:-15978269 | MsG0280007476.01.T01:CDS |
| TACTACTAAAATTGATGTTT+GGG | 0.417355 | 2:-15978032 | MsG0280007476.01.T01:CDS |
| CTTGTCTTTGCTCAAACCAT+GGG | 0.418322 | 2:-15978268 | MsG0280007476.01.T01:CDS |
| TTCTTCCTAGAATTATCAAC+AGG | 0.438613 | 2:+15977737 | None:intergenic |
| TGAAGGAATTGAGGTATTGT+CGG | 0.455176 | 2:-15977882 | MsG0280007476.01.T01:CDS |
| TGGTTGAGAATTCTATTCAC+TGG | 0.467560 | 2:-15978240 | MsG0280007476.01.T01:CDS |
| TTATTCTAGTGATGGAAGTA+AGG | 0.471595 | 2:-15977912 | MsG0280007476.01.T01:CDS |
| TCTTCTTCACCTATTCCATC+AGG | 0.481241 | 2:+15978130 | None:intergenic |
| TGTTGATAATTCTAGGAAGA+AGG | 0.481391 | 2:-15977735 | MsG0280007476.01.T01:CDS |
| GGAAGTAAGGTTCTGATTGA+AGG | 0.493809 | 2:-15977899 | MsG0280007476.01.T01:CDS |
| GGTTCTGATTGAAGGAATTG+AGG | 0.500844 | 2:-15977891 | MsG0280007476.01.T01:CDS |
| AATGATGTTCCACTTCCTGA+TGG | 0.501022 | 2:-15978145 | MsG0280007476.01.T01:CDS |
| ATAATGGCGAAGAAACTTGA+TGG | 0.504250 | 2:-15978217 | MsG0280007476.01.T01:CDS |
| GATGGAGCTAAGATTTGTGT+TGG | 0.515927 | 2:-15977782 | MsG0280007476.01.T01:CDS |
| GTTCCACTTCCTGATGGAAT+AGG | 0.516551 | 2:-15978139 | MsG0280007476.01.T01:CDS |
| GATGGAATTCATGATTTCGA+TGG | 0.520793 | 2:-15977800 | MsG0280007476.01.T01:CDS |
| CCTTTAGGTTATTCTAGTGA+TGG | 0.524581 | 2:-15977920 | MsG0280007476.01.T01:CDS |
| TCACCTATTCCATCAGGAAG+TGG | 0.525389 | 2:+15978136 | None:intergenic |
| ATTGATGTTGCTGCTTTGGG+AGG | 0.537465 | 2:-15978082 | MsG0280007476.01.T01:CDS |
| CCATGGTTTGAGCAAAGACA+AGG | 0.561539 | 2:+15978269 | None:intergenic |
| CCTAGAATTATCAACAGGAA+AGG | 0.567727 | 2:+15977742 | None:intergenic |
| TGAGCAAAGACAAGGGCGTA+AGG | 0.568174 | 2:+15978277 | None:intergenic |
| ATACAAGCAAGAGCAAGAAA+AGG | 0.569969 | 2:-15977706 | MsG0280007476.01.T01:intron |
| TTGTCTTTGCTCAAACCATG+GGG | 0.580338 | 2:-15978267 | MsG0280007476.01.T01:CDS |
| AATATGGTTCTAGAGATAGT+TGG | 0.584921 | 2:-15978000 | MsG0280007476.01.T01:CDS |
| CCATCACTAGAATAACCTAA+AGG | 0.590173 | 2:+15977920 | None:intergenic |
| TTAAACGCGACGATTAAAGA+AGG | 0.597882 | 2:+15978187 | None:intergenic |
| GAATTATCAACAGGAAAGGA+AGG | 0.599958 | 2:+15977746 | None:intergenic |
| TAATGGCGAAGAAACTTGAT+GGG | 0.604337 | 2:-15978216 | MsG0280007476.01.T01:CDS |
| TGATGGAATAGGTGAAGAAG+AGG | 0.604929 | 2:-15978128 | MsG0280007476.01.T01:CDS |
| AATTGAGTTATGAATGTCGA+AGG | 0.610264 | 2:-15976851 | MsG0280007476.01.T01:CDS |
| TGTCTTTGCTCAAACCATGG+GGG | 0.639624 | 2:-15978266 | MsG0280007476.01.T01:CDS |
| AGGAATTGAGGTATTGTCGG+AGG | 0.653752 | 2:-15977879 | MsG0280007476.01.T01:CDS |
| TTATCAACAGGAAAGGAAGG+TGG | 0.670400 | 2:+15977749 | None:intergenic |
| CATGGTTTGAGCAAAGACAA+GGG | 0.678206 | 2:+15978270 | None:intergenic |
| ATGATTTGATAGATTGACAG+CGG | 0.691832 | 2:-15977150 | MsG0280007476.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAATTCAAAACATAA+AGG | + | Chr2:15978033-15978052 | None:intergenic | 15.0% |
| !!! | TTCATTTAGTTATTTGTTTT+GGG | - | Chr2:15978046-15978065 | MsG0280007476.01.T01:CDS | 15.0% |
| !!! | TTTCATTTAGTTATTTGTTT+TGG | - | Chr2:15978045-15978064 | MsG0280007476.01.T01:CDS | 15.0% |
| !! | AACTACATAAATCATATGAT+GGG | + | Chr2:15977512-15977531 | None:intergenic | 20.0% |
| !! | ATACTACTAAAATTGATGTT+TGG | - | Chr2:15977095-15977114 | MsG0280007476.01.T01:intron | 20.0% |
| !! | ATTAGTTAATATCAGTTCAA+TGG | - | Chr2:15977485-15977504 | MsG0280007476.01.T01:intron | 20.0% |
| !! | TAACTACATAAATCATATGA+TGG | + | Chr2:15977513-15977532 | None:intergenic | 20.0% |
| !! | TACTACTAAAATTGATGTTT+GGG | - | Chr2:15977096-15977115 | MsG0280007476.01.T01:intron | 20.0% |
| !! | TCAAATTGAATGCTTATTAT+AGG | - | Chr2:15977549-15977568 | MsG0280007476.01.T01:intron | 20.0% |
| !!! | AAAAGGTACTTATTGATTAT+CGG | - | Chr2:15977439-15977458 | MsG0280007476.01.T01:intron | 20.0% |
| !!! | CAAAAATTGAGTCTTATTAT+AGG | - | Chr2:15977626-15977645 | MsG0280007476.01.T01:intron | 20.0% |
| !!! | CTATAATAAGACTCAATTTT+TGG | + | Chr2:15977628-15977647 | None:intergenic | 20.0% |
| ! | AGATACACAAGATCTATAAA+AGG | + | Chr2:15977915-15977934 | None:intergenic | 25.0% |
| ! | TGAATGCTTATTATAGGAAA+AGG | - | Chr2:15977555-15977574 | MsG0280007476.01.T01:intron | 25.0% |
| !! | AATAAAGACATTTTGCCATT+AGG | + | Chr2:15977857-15977876 | None:intergenic | 25.0% |
| !! | AATTAGTCTATAGAACAGTT+AGG | + | Chr2:15978087-15978106 | None:intergenic | 25.0% |
| !! | ACAAGATCTATAAAAGGTTT+TGG | + | Chr2:15977909-15977928 | None:intergenic | 25.0% |
| !! | TACATTATAAGAAGCTGTTT+TGG | - | Chr2:15977272-15977291 | MsG0280007476.01.T01:intron | 25.0% |
| !! | TTGGTGTAAACTTTTTACTT+TGG | - | Chr2:15977147-15977166 | MsG0280007476.01.T01:intron | 25.0% |
| !!! | AATTTGCTAAGTGTGAATTT+TGG | - | Chr2:15977753-15977772 | MsG0280007476.01.T01:CDS | 25.0% |
| !!! | TTGAGTCTTATTATAGGAAA+AGG | - | Chr2:15977632-15977651 | MsG0280007476.01.T01:intron | 25.0% |
| AATTGAGTTATGAATGTCGA+AGG | - | Chr2:15978277-15978296 | MsG0280007476.01.T01:CDS | 30.0% | |
| ATGATTTGATAGATTGACAG+CGG | - | Chr2:15977978-15977997 | MsG0280007476.01.T01:CDS | 30.0% | |
| CATTGAAAATCTCAAGTGTT+AGG | + | Chr2:15976967-15976986 | None:intergenic | 30.0% | |
| GAACAAGTTAGTTATGTTGA+TGG | - | Chr2:15977310-15977329 | MsG0280007476.01.T01:intron | 30.0% | |
| GAATTCTATTCACTGGATAA+TGG | - | Chr2:15976895-15976914 | MsG0280007476.01.T01:CDS | 30.0% | |
| GTTGGATTCATCTTGAAAAT+AGG | - | Chr2:15978229-15978248 | MsG0280007476.01.T01:CDS | 30.0% | |
| TTCTTCCTAGAATTATCAAC+AGG | + | Chr2:15977394-15977413 | None:intergenic | 30.0% | |
| TTTGTTTATTGTGTGTCTTC+TGG | - | Chr2:15977677-15977696 | MsG0280007476.01.T01:intron | 30.0% | |
| ! | ATCATTTGATAGCCATCATA+TGG | - | Chr2:15978131-15978150 | MsG0280007476.01.T01:CDS | 30.0% |
| ! | TTATTCTAGTGATGGAAGTA+AGG | - | Chr2:15977216-15977235 | MsG0280007476.01.T01:intron | 30.0% |
| !! | AATATGGTTCTAGAGATAGT+TGG | - | Chr2:15977128-15977147 | MsG0280007476.01.T01:CDS | 30.0% |
| !! | GGCTATCAAATGATTTGTTA+AGG | + | Chr2:15978125-15978144 | None:intergenic | 30.0% |
| !! | TGTTGATAATTCTAGGAAGA+AGG | - | Chr2:15977393-15977412 | MsG0280007476.01.T01:intron | 30.0% |
| AAGCCAAACACAAATAAGCA+AGG | + | Chr2:15978190-15978209 | None:intergenic | 35.0% | |
| AAGGTTCAATTTCACTTGAC+TGG | + | Chr2:15978171-15978190 | None:intergenic | 35.0% | |
| ATAAACAAGCTGCCATATGA+TGG | + | Chr2:15978146-15978165 | None:intergenic | 35.0% | |
| ATAATGGCGAAGAAACTTGA+TGG | - | Chr2:15976911-15976930 | MsG0280007476.01.T01:CDS | 35.0% | |
| ATACAAGCAAGAGCAAGAAA+AGG | - | Chr2:15977422-15977441 | MsG0280007476.01.T01:intron | 35.0% | |
| CCATCACTAGAATAACCTAA+AGG | + | Chr2:15977211-15977230 | None:intergenic | 35.0% | |
| CCTAGAATTATCAACAGGAA+AGG | + | Chr2:15977389-15977408 | None:intergenic | 35.0% | |
| CTATAGACTAATTTCCATCG+AGG | - | Chr2:15978094-15978113 | MsG0280007476.01.T01:CDS | 35.0% | |
| GAACCTTGCTTATTTGTGTT+TGG | - | Chr2:15978184-15978203 | MsG0280007476.01.T01:CDS | 35.0% | |
| GAATTATCAACAGGAAAGGA+AGG | + | Chr2:15977385-15977404 | None:intergenic | 35.0% | |
| GATGGAATTCATGATTTCGA+TGG | - | Chr2:15977328-15977347 | MsG0280007476.01.T01:intron | 35.0% | |
| GTTTGGGTGATGAAAGAATA+TGG | - | Chr2:15977112-15977131 | MsG0280007476.01.T01:intron | 35.0% | |
| TAATGGCGAAGAAACTTGAT+GGG | - | Chr2:15976912-15976931 | MsG0280007476.01.T01:CDS | 35.0% | |
| TGGTTGAGAATTCTATTCAC+TGG | - | Chr2:15976888-15976907 | MsG0280007476.01.T01:CDS | 35.0% | |
| TTAAACGCGACGATTAAAGA+AGG | + | Chr2:15976944-15976963 | None:intergenic | 35.0% | |
| TTGAAATCATCGAGTCCTTT+AGG | - | Chr2:15977193-15977212 | MsG0280007476.01.T01:intron | 35.0% | |
| ! | CCTTTAGGTTATTCTAGTGA+TGG | - | Chr2:15977208-15977227 | MsG0280007476.01.T01:intron | 35.0% |
| ! | TAGTTCTACATTCTTGCTGT+TGG | - | Chr2:15978211-15978230 | MsG0280007476.01.T01:CDS | 35.0% |
| ! | TGAAATTGATGTTGCTGCTT+TGG | - | Chr2:15977042-15977061 | MsG0280007476.01.T01:intron | 35.0% |
| !! | CCTTTCCTGTTGATAATTCT+AGG | - | Chr2:15977386-15977405 | MsG0280007476.01.T01:intron | 35.0% |
| !! | GAAATTGATGTTGCTGCTTT+GGG | - | Chr2:15977043-15977062 | MsG0280007476.01.T01:intron | 35.0% |
| !! | TGAAGGAATTGAGGTATTGT+CGG | - | Chr2:15977246-15977265 | MsG0280007476.01.T01:intron | 35.0% |
| AATGATGTTCCACTTCCTGA+TGG | - | Chr2:15976983-15977002 | MsG0280007476.01.T01:intron | 40.0% | |
| ATGTACTTGCCACATCCTAA+TGG | - | Chr2:15977839-15977858 | MsG0280007476.01.T01:CDS | 40.0% | |
| CATGGTTTGAGCAAAGACAA+GGG | + | Chr2:15976861-15976880 | None:intergenic | 40.0% | |
| CTTGTCTTTGCTCAAACCAT+GGG | - | Chr2:15976860-15976879 | MsG0280007476.01.T01:CDS | 40.0% | |
| GATGGAGCTAAGATTTGTGT+TGG | - | Chr2:15977346-15977365 | MsG0280007476.01.T01:intron | 40.0% | |
| GGTCACGTATACTTAAACAC+AGG | + | Chr2:15977607-15977626 | None:intergenic | 40.0% | |
| GGTTTGCATGCTTGTTCAAA+TGG | - | Chr2:15978250-15978269 | MsG0280007476.01.T01:CDS | 40.0% | |
| TCTTCTTCACCTATTCCATC+AGG | + | Chr2:15977001-15977020 | None:intergenic | 40.0% | |
| TGATGGAATAGGTGAAGAAG+AGG | - | Chr2:15977000-15977019 | MsG0280007476.01.T01:intron | 40.0% | |
| TTATCAACAGGAAAGGAAGG+TGG | + | Chr2:15977382-15977401 | None:intergenic | 40.0% | |
| TTGTCTTTGCTCAAACCATG+GGG | - | Chr2:15976861-15976880 | MsG0280007476.01.T01:CDS | 40.0% | |
| ! | GACATTTTGCCATTAGGATG+TGG | + | Chr2:15977851-15977870 | None:intergenic | 40.0% |
| ! | GGAAGTAAGGTTCTGATTGA+AGG | - | Chr2:15977229-15977248 | MsG0280007476.01.T01:intron | 40.0% |
| ! | GGTTCTGATTGAAGGAATTG+AGG | - | Chr2:15977237-15977256 | MsG0280007476.01.T01:intron | 40.0% |
| ATTCTCAACCAAAACCCCCA+TGG | + | Chr2:15976879-15976898 | None:intergenic | 45.0% | |
| CCATGGTTTGAGCAAAGACA+AGG | + | Chr2:15976862-15976881 | None:intergenic | 45.0% | |
| CCTTGTCTTTGCTCAAACCA+TGG | - | Chr2:15976859-15976878 | MsG0280007476.01.T01:CDS | 45.0% | |
| GTTCCACTTCCTGATGGAAT+AGG | - | Chr2:15976989-15977008 | MsG0280007476.01.T01:intron | 45.0% | |
| TCACCTATTCCATCAGGAAG+TGG | + | Chr2:15976995-15977014 | None:intergenic | 45.0% | |
| TGTCTTTGCTCAAACCATGG+GGG | - | Chr2:15976862-15976881 | MsG0280007476.01.T01:CDS | 45.0% | |
| TTGTTAAGGCAACACCTCGA+TGG | + | Chr2:15978111-15978130 | None:intergenic | 45.0% | |
| !! | AGGAATTGAGGTATTGTCGG+AGG | - | Chr2:15977249-15977268 | MsG0280007476.01.T01:intron | 45.0% |
| !! | ATTGATGTTGCTGCTTTGGG+AGG | - | Chr2:15977046-15977065 | MsG0280007476.01.T01:intron | 45.0% |
| ! | TGAGCAAAGACAAGGGCGTA+AGG | + | Chr2:15976854-15976873 | None:intergenic | 50.0% |
| ! | TGCTCAAACCATGGGGGTTT+TGG | - | Chr2:15976868-15976887 | MsG0280007476.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 15976848 | 15978302 | 15976848 | ID=MsG0280007476.01;Name=MsG0280007476.01 |
| Chr2 | mRNA | 15976848 | 15978302 | 15976848 | ID=MsG0280007476.01.T01;Parent=MsG0280007476.01;Name=MsG0280007476.01.T01;_AED=0.45;_eAED=0.51;_QI=0|0|0|1|0|0|3|0|239 |
| Chr2 | exon | 15977707 | 15978302 | 15977707 | ID=MsG0280007476.01.T01:exon:1161;Parent=MsG0280007476.01.T01 |
| Chr2 | exon | 15977126 | 15977160 | 15977126 | ID=MsG0280007476.01.T01:exon:1160;Parent=MsG0280007476.01.T01 |
| Chr2 | exon | 15976848 | 15976936 | 15976848 | ID=MsG0280007476.01.T01:exon:1159;Parent=MsG0280007476.01.T01 |
| Chr2 | CDS | 15977707 | 15978302 | 15977707 | ID=MsG0280007476.01.T01:cds;Parent=MsG0280007476.01.T01 |
| Chr2 | CDS | 15977126 | 15977160 | 15977126 | ID=MsG0280007476.01.T01:cds;Parent=MsG0280007476.01.T01 |
| Chr2 | CDS | 15976848 | 15976936 | 15976848 | ID=MsG0280007476.01.T01:cds;Parent=MsG0280007476.01.T01 |
| Gene Sequence |
| Protein sequence |
