AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011156.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011156.01.T01 MTR_2g099820 85.660 265 26 1 1 253 1 265 1.45e-152 428
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011156.01.T01 AT3G13780 40.977 266 144 5 1 253 14 279 6.55e-55 180

Find 77 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAAATTGATCCTGTTAA+AGG 0.155025 2:-80319511 MsG0280011156.01.T01:intron
GAAATTCGAAATGGGTCATT+TGG 0.296722 2:-80319638 MsG0280011156.01.T01:CDS
TCAAAGTTATTACCTTTAAC+AGG 0.314979 2:+80319499 None:intergenic
AAGGTTTCATTTCAAGTCAT+TGG 0.319227 2:-80319715 MsG0280011156.01.T01:CDS
GAATGAAGCCTTGTATGTTT+AGG 0.320634 2:-80317497 MsG0280011156.01.T01:three_prime_UTR
TCATTGGAAGAAACCCTATC+TGG 0.338307 2:-80319699 MsG0280011156.01.T01:CDS
TGATCCGGAATGTGGAGAAT+TGG 0.345241 2:-80318057 MsG0280011156.01.T01:CDS
ATGTTCTCATAACTGATAAT+TGG 0.345555 2:-80317418 MsG0280011156.01.T01:three_prime_UTR
GTATCTTTGATATCTCTCTT+AGG 0.370454 2:+80317827 None:intergenic
TCATCCTCACTTTCTTTGCT+AGG 0.386031 2:+80318016 None:intergenic
TTGTTCTTCAAAACCCAGAT+AGG 0.388052 2:+80319685 None:intergenic
GGATCATGCCCTTTGGATAC+TGG 0.392754 2:+80318074 None:intergenic
TGTCTGCGAAAACACCCTTT+TGG 0.394919 2:-80319594 MsG0280011156.01.T01:CDS
CTTCTTCAAATTGAACCAAA+AGG 0.419549 2:+80319579 None:intergenic
GATCCGGAATGTGGAGAATT+GGG 0.436535 2:-80318056 MsG0280011156.01.T01:CDS
AAGGAACTTGTTGCCAAGGT+TGG 0.440005 2:-80317899 MsG0280011156.01.T01:CDS
TGAGGATGAGGAAGAGGAGG+AGG 0.440983 2:-80317693 MsG0280011156.01.T01:CDS
AGGAACTTGTTGCCAAGGTT+GGG 0.441751 2:-80317898 MsG0280011156.01.T01:CDS
ACATTCCGGATCATGCCCTT+TGG 0.441791 2:+80318067 None:intergenic
TGAGGATAAAAGGAAAATGA+AGG 0.453909 2:-80317984 MsG0280011156.01.T01:CDS
GAAATGGGTCATTTGGAACT+TGG 0.454601 2:-80319631 MsG0280011156.01.T01:CDS
ACACTGTTCGGACGAGGTTG+CGG 0.458112 2:-80319817 MsG0280011156.01.T01:CDS
ATGACTTGAAATGAAACCTT+AGG 0.465906 2:+80319718 None:intergenic
TTCTTCAAATTGAACCAAAA+GGG 0.471521 2:+80319580 None:intergenic
TGGTGATAGTGAAGATGATA+AGG 0.481772 2:-80317918 MsG0280011156.01.T01:CDS
GCTGTGGCGGGGTAAAATCA+AGG 0.481950 2:-80317644 MsG0280011156.01.T01:exon
TTTCTTACCTTTCCCAACCT+TGG 0.496576 2:+80317886 None:intergenic
AATCAGACTCGTTGTTGAGT+TGG 0.499196 2:+80319749 None:intergenic
CATCACAAGGCCACGGCACT+TGG 0.512507 2:+80317596 None:intergenic
TAGCAAAGAAAGTGAGGATG+AGG 0.513147 2:-80318014 MsG0280011156.01.T01:CDS
AACAGCGACAAAACACTGTT+CGG 0.516498 2:-80319829 MsG0280011156.01.T01:CDS
TGACAATGAGGATGAGGAAG+AGG 0.516829 2:-80317699 MsG0280011156.01.T01:CDS
TGTTCTTCAAAACCCAGATA+GGG 0.524313 2:+80319686 None:intergenic
ACTCCCAATTCTCCACATTC+CGG 0.528495 2:+80318053 None:intergenic
CAATGAGGATGAGGAAGAGG+AGG 0.529872 2:-80317696 MsG0280011156.01.T01:CDS
GCAAGGTCTAAAGACAATAG+AGG 0.531239 2:-80317851 MsG0280011156.01.T01:CDS
AGTATCCAAAGGGCATGATC+CGG 0.532093 2:-80318072 MsG0280011156.01.T01:CDS
ATGGAGTTCGAAGGCGAAGA+TGG 0.533843 2:-80319871 MsG0280011156.01.T01:CDS
GTCTGATTCAGAGCCTCCTA+AGG 0.535965 2:-80319734 MsG0280011156.01.T01:CDS
TGATGAAGAAGATGAGGATG+AGG 0.536649 2:-80317732 MsG0280011156.01.T01:CDS
TGATAAGGAACTTGTTGCCA+AGG 0.542488 2:-80317903 MsG0280011156.01.T01:CDS
TTAGACCTTGCGGAGTACCT+AGG 0.545892 2:+80317863 None:intergenic
CTTGTTGCCAAGGTTGGGAA+AGG 0.547757 2:-80317893 MsG0280011156.01.T01:CDS
CATTGGAAGAAACCCTATCT+GGG 0.552765 2:-80319698 MsG0280011156.01.T01:CDS
GACAAAACACTGTTCGGACG+AGG 0.556592 2:-80319823 MsG0280011156.01.T01:CDS
AAACAATGACAATGAGGATG+AGG 0.562409 2:-80317705 MsG0280011156.01.T01:CDS
GAGGATAAAAGGAAAATGAA+GGG 0.567105 2:-80317983 MsG0280011156.01.T01:CDS
GATGACGATGATGCTGTGGC+GGG 0.568109 2:-80317656 MsG0280011156.01.T01:CDS
TCTATTGTCTTTAGACCTTG+CGG 0.572441 2:+80317853 None:intergenic
TTGGGAAAGGTAAGAAACCT+AGG 0.574841 2:-80317880 MsG0280011156.01.T01:CDS
AACAAAGATGACGAGTGGAC+TGG 0.579821 2:-80317938 MsG0280011156.01.T01:CDS
GAGTTTGACCAGTATCCAAA+GGG 0.590357 2:-80318082 MsG0280011156.01.T01:CDS
ACTTGAAATGAAACCTTAGG+AGG 0.593531 2:+80319721 None:intergenic
AAAGGGCATGATCCGGAATG+TGG 0.603271 2:-80318065 MsG0280011156.01.T01:CDS
GACGATGATGAGACGCTAGG+AGG 0.603685 2:-80317767 MsG0280011156.01.T01:CDS
CACTACATATCAACATCACA+AGG 0.606768 2:+80317583 None:intergenic
CTGTGGCGGGGTAAAATCAA+GGG 0.609371 2:-80317643 MsG0280011156.01.T01:exon
AACATAGTCCTAAACATACA+AGG 0.620114 2:+80317489 None:intergenic
TGAGTTTGACCAGTATCCAA+AGG 0.622122 2:-80318083 MsG0280011156.01.T01:CDS
GAAACAACAAAGATGACGAG+TGG 0.633203 2:-80317943 MsG0280011156.01.T01:CDS
GGAGCCTAGCAAAGAAAGTG+AGG 0.635527 2:-80318020 MsG0280011156.01.T01:CDS
AGATGACGATGATGCTGTGG+CGG 0.638524 2:-80317657 MsG0280011156.01.T01:CDS
GAATTGGGAGTGGTTTCTCG+AGG 0.640949 2:-80318041 MsG0280011156.01.T01:CDS
TAATTCTGAATGGAGTTCGA+AGG 0.641013 2:-80319880 MsG0280011156.01.T01:exon
GGAATGTGGAGAATTGGGAG+TGG 0.641413 2:-80318051 MsG0280011156.01.T01:CDS
GGAACAAAACAATGACAATG+AGG 0.654439 2:-80317711 MsG0280011156.01.T01:CDS
ATATCAACATCACAAGGCCA+CGG 0.654785 2:+80317589 None:intergenic
TGTTACTGATGAAGAAGATG+AGG 0.658205 2:-80317738 MsG0280011156.01.T01:CDS
GATGACGATGATGAGACGCT+AGG 0.662670 2:-80317770 MsG0280011156.01.T01:CDS
TGTTTAGATACCAAGTGCCG+TGG 0.663591 2:-80317606 MsG0280011156.01.T01:three_prime_UTR
AGAAACCTAGGTACTCCGCA+AGG 0.683889 2:-80317868 MsG0280011156.01.T01:CDS
AGAAGATGACGATGATGCTG+TGG 0.684484 2:-80317660 MsG0280011156.01.T01:CDS
TGTGGCGGGGTAAAATCAAG+GGG 0.695867 2:-80317642 MsG0280011156.01.T01:exon
ATGACGATGATGCTGTGGCG+GGG 0.727263 2:-80317655 MsG0280011156.01.T01:CDS
CGTGATGACGAGAAACAGTG+TGG 0.730657 2:+80319779 None:intergenic
AGATATCAAAGATACCAGTG+TGG 0.758745 2:-80317819 MsG0280011156.01.T01:CDS
GTGGCGGGGTAAAATCAAGG+GGG 0.803835 2:-80317641 MsG0280011156.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTCATTTTCAATATA+AGG - Chr2:80318514-80318533 MsG0280011156.01.T01:intron 10.0%
!! TAATTTATTTAAGTATATCC+AGG - Chr2:80318125-80318144 MsG0280011156.01.T01:intron 15.0%
!! TACAAATTCCAATATTATTT+AGG - Chr2:80318591-80318610 MsG0280011156.01.T01:intron 15.0%
!!! AGTTTATTTTTGTGTTAATT+TGG - Chr2:80318453-80318472 MsG0280011156.01.T01:intron 15.0%
!!! TTTTAACAAAATCGATAATT+TGG - Chr2:80317881-80317900 MsG0280011156.01.T01:CDS 15.0%
!! AAAAATAGTTTCCATCAAAA+GGG + Chr2:80317809-80317828 None:intergenic 20.0%
!! AACTTGATCCTAAATAATAT+TGG + Chr2:80318602-80318621 None:intergenic 20.0%
!! AATAAGTTAAAAACAACTCA+TGG + Chr2:80318227-80318246 None:intergenic 20.0%
!! ATTATTCAGAAAAACATGTT+TGG + Chr2:80317385-80317404 None:intergenic 20.0%
!! CTTATATATAAGCACTTATA+TGG - Chr2:80318338-80318357 MsG0280011156.01.T01:intron 20.0%
!! TAGAATTATACTATCCTTAA+AGG + Chr2:80318089-80318108 None:intergenic 20.0%
!! TTAAGGATAGTATAATTCTA+AGG - Chr2:80318089-80318108 MsG0280011156.01.T01:CDS 20.0%
!!! AAAAGTAAGTTTTTTTTAGC+TGG - Chr2:80317904-80317923 MsG0280011156.01.T01:CDS 20.0%
!!! ATTTTCAAGAAATTCGAAAT+GGG - Chr2:80317635-80317654 MsG0280011156.01.T01:exon 20.0%
!!! TCATTTTCAATATAAGGTAT+GGG - Chr2:80318520-80318539 MsG0280011156.01.T01:intron 20.0%
!!! TTCATTTTCAATATAAGGTA+TGG - Chr2:80318519-80318538 MsG0280011156.01.T01:intron 20.0%
!!! TTTTTCTGAATAATTCTGAA+TGG - Chr2:80317391-80317410 MsG0280011156.01.T01:three_prime_UTR 20.0%
! AAAACAAATTCAAGCGTAAA+TGG + Chr2:80319092-80319111 None:intergenic 25.0%
! AAAATAGTTTCCATCAAAAG+GGG + Chr2:80317808-80317827 None:intergenic 25.0%
! AAAGTATACATGTCCTTAAA+AGG + Chr2:80318496-80318515 None:intergenic 25.0%
! ATCATAAACTATAGTACTCA+TGG + Chr2:80318429-80318448 None:intergenic 25.0%
! ATGTTCTCATAACTGATAAT+TGG - Chr2:80319863-80319882 MsG0280011156.01.T01:CDS 25.0%
! CAAAAATAGTTTCCATCAAA+AGG + Chr2:80317810-80317829 None:intergenic 25.0%
! CAGAATAATCCCATATTTAT+AGG + Chr2:80318722-80318741 None:intergenic 25.0%
! CGAATACTACCTATAAATAT+GGG - Chr2:80318710-80318729 MsG0280011156.01.T01:intron 25.0%
! GATGCTAATATTATAGAAGA+AGG + Chr2:80318550-80318569 None:intergenic 25.0%
! TCAAAGTTATTACCTTTAAC+AGG + Chr2:80317785-80317804 None:intergenic 25.0%
! TCGAATACTACCTATAAATA+TGG - Chr2:80318709-80318728 MsG0280011156.01.T01:intron 25.0%
! TTCTTCAAATTGAACCAAAA+GGG + Chr2:80317704-80317723 None:intergenic 25.0%
!! AATGCTTTTATAAAGTGTAC+AGG + Chr2:80319894-80319913 None:intergenic 25.0%
!! ATGCTTTTATAAAGTGTACA+GGG + Chr2:80319893-80319912 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCTAAC+AGG - Chr2:80318386-80318405 MsG0280011156.01.T01:intron 25.0%
!! CATTTTCAATATAAGGTATG+GGG - Chr2:80318521-80318540 MsG0280011156.01.T01:intron 25.0%
!! CTTCATTCCTTTTGTAAATT+TGG - Chr2:80318655-80318674 MsG0280011156.01.T01:intron 25.0%
!! TTAAGTTGTTTATCCTAACA+GGG - Chr2:80318387-80318406 MsG0280011156.01.T01:intron 25.0%
!! TTTGAGAGTTTCTTTTGTAT+TGG - Chr2:80318029-80318048 MsG0280011156.01.T01:CDS 25.0%
!!! AAAAAGTGTTGAACTTTTCT+GGG - Chr2:80318781-80318800 MsG0280011156.01.T01:intron 25.0%
!!! AATTTTGAAAATGCAGAGTT+TGG - Chr2:80319157-80319176 MsG0280011156.01.T01:intron 25.0%
!!! CTTTCATTTTTGTTGTTTCT+CGG - Chr2:80318630-80318649 MsG0280011156.01.T01:intron 25.0%
!!! GATTTTCAAGAAATTCGAAA+TGG - Chr2:80317634-80317653 MsG0280011156.01.T01:exon 25.0%
!!! TAAAAAGTGTTGAACTTTTC+TGG - Chr2:80318780-80318799 MsG0280011156.01.T01:intron 25.0%
!!! TTTTAGTTTGACTGATTCTT+AGG - Chr2:80318166-80318185 MsG0280011156.01.T01:intron 25.0%
AACATAGTCCTAAACATACA+AGG + Chr2:80319795-80319814 None:intergenic 30.0%
AATGGAAATGAAATGGTTAC+TGG - Chr2:80318810-80318829 MsG0280011156.01.T01:intron 30.0%
ACTTGAAAATCTCTTTCTCA+AGG + Chr2:80318848-80318867 None:intergenic 30.0%
ATGACTTGAAATGAAACCTT+AGG + Chr2:80317566-80317585 None:intergenic 30.0%
ATTCAGAAAAACATGTTTGG+CGG + Chr2:80317382-80317401 None:intergenic 30.0%
CAAGCAACCAAATTTACAAA+AGG + Chr2:80318665-80318684 None:intergenic 30.0%
CTTCTTCAAATTGAACCAAA+AGG + Chr2:80317705-80317724 None:intergenic 30.0%
GAATTTGTAACCAACTAAAG+AGG + Chr2:80318580-80318599 None:intergenic 30.0%
GAGGATAAAAGGAAAATGAA+GGG - Chr2:80319298-80319317 MsG0280011156.01.T01:intron 30.0%
GGTTAGAAATGGAAATGAAA+TGG - Chr2:80318803-80318822 MsG0280011156.01.T01:intron 30.0%
GTATATTTGTGTAGCCTTTA+AGG - Chr2:80318072-80318091 MsG0280011156.01.T01:CDS 30.0%
GTATCTTTGATATCTCTCTT+AGG + Chr2:80319457-80319476 None:intergenic 30.0%
TCACAAATTGATCCTGTTAA+AGG - Chr2:80317770-80317789 MsG0280011156.01.T01:CDS 30.0%
TGAGGATAAAAGGAAAATGA+AGG - Chr2:80319297-80319316 MsG0280011156.01.T01:intron 30.0%
! AAGGTTTCATTTCAAGTCAT+TGG - Chr2:80317566-80317585 MsG0280011156.01.T01:three_prime_UTR 30.0%
! AATTCACAGTGATAGCTTTT+AGG - Chr2:80319115-80319134 MsG0280011156.01.T01:intron 30.0%
! CTTTTGTAAATTTGGTTGCT+TGG - Chr2:80318663-80318682 MsG0280011156.01.T01:intron 30.0%
! TGAATTTTACTACCCTTAGA+AGG + Chr2:80319019-80319038 None:intergenic 30.0%
!! AGGATGATTTTGAGGATAAA+AGG - Chr2:80319287-80319306 MsG0280011156.01.T01:intron 30.0%
!! ATAATTCTAAGGCTCTTGTT+TGG - Chr2:80318100-80318119 MsG0280011156.01.T01:CDS 30.0%
!! GCTGTTTTGTAAAGAGAATT+TGG + Chr2:80317438-80317457 None:intergenic 30.0%
!! GTTAGCTTAATAGCCTTTTA+AGG - Chr2:80318480-80318499 MsG0280011156.01.T01:intron 30.0%
!!! AAAAGTGTTGAACTTTTCTG+GGG - Chr2:80318782-80318801 MsG0280011156.01.T01:intron 30.0%
!!! AGTTTGGTTTTCTTGTTATG+AGG - Chr2:80319173-80319192 MsG0280011156.01.T01:intron 30.0%
!!! TGTCTTTTGAAATTGAGTGT+GGG - Chr2:80318757-80318776 MsG0280011156.01.T01:intron 30.0%
!!! TTGTCTTTTGAAATTGAGTG+TGG - Chr2:80318756-80318775 MsG0280011156.01.T01:intron 30.0%
AAACAATGACAATGAGGATG+AGG - Chr2:80319576-80319595 MsG0280011156.01.T01:CDS 35.0%
AATCTCTTTCTCAAGGAATG+TGG + Chr2:80318841-80318860 None:intergenic 35.0%
ACTTGAAATGAAACCTTAGG+AGG + Chr2:80317563-80317582 None:intergenic 35.0%
AGATATCAAAGATACCAGTG+TGG - Chr2:80319462-80319481 MsG0280011156.01.T01:intron 35.0%
CACTACATATCAACATCACA+AGG + Chr2:80319701-80319720 None:intergenic 35.0%
GAAATTCGAAATGGGTCATT+TGG - Chr2:80317643-80317662 MsG0280011156.01.T01:exon 35.0%
GGAACAAAACAATGACAATG+AGG - Chr2:80319570-80319589 MsG0280011156.01.T01:CDS 35.0%
GTTTAGCATTGTTCACTTGA+TGG - Chr2:80319044-80319063 MsG0280011156.01.T01:intron 35.0%
TAATTCTGAATGGAGTTCGA+AGG - Chr2:80317401-80317420 MsG0280011156.01.T01:three_prime_UTR 35.0%
TCCTGCTAAGAAAATGTCAT+TGG + Chr2:80317970-80317989 None:intergenic 35.0%
TCTATTGTCTTTAGACCTTG+CGG + Chr2:80319431-80319450 None:intergenic 35.0%
TGCTGAATTCATGTCAACAA+TGG - Chr2:80318885-80318904 MsG0280011156.01.T01:intron 35.0%
TGTTACTGATGAAGAAGATG+AGG - Chr2:80319543-80319562 MsG0280011156.01.T01:CDS 35.0%
TGTTCTTCAAAACCCAGATA+GGG + Chr2:80317598-80317617 None:intergenic 35.0%
TTATATCTTGCAAGTGTCTC+TGG - Chr2:80318985-80319004 MsG0280011156.01.T01:intron 35.0%
TTGTTCTTCAAAACCCAGAT+AGG + Chr2:80317599-80317618 None:intergenic 35.0%
! ATAACTTTGACCCCTTTTGA+TGG - Chr2:80317795-80317814 MsG0280011156.01.T01:CDS 35.0%
! CTCATGGTTGACTTAGATTT+AGG + Chr2:80318413-80318432 None:intergenic 35.0%
! GAATGAAGCCTTGTATGTTT+AGG - Chr2:80319784-80319803 MsG0280011156.01.T01:CDS 35.0%
! GGATATGAGTTGCAAGTTTT+TGG - Chr2:80318050-80318069 MsG0280011156.01.T01:CDS 35.0%
! TGGTGATAGTGAAGATGATA+AGG - Chr2:80319363-80319382 MsG0280011156.01.T01:intron 35.0%
! TTCATCATTTTCATCCACAC+TGG + Chr2:80319479-80319498 None:intergenic 35.0%
! TTTTCGCAGACAAGCAAAAT+CGG + Chr2:80317679-80317698 None:intergenic 35.0%
!!! AACTTTTCTGGGGTTAGAAA+TGG - Chr2:80318792-80318811 MsG0280011156.01.T01:intron 35.0%
AACAGCGACAAAACACTGTT+CGG - Chr2:80317452-80317471 MsG0280011156.01.T01:three_prime_UTR 40.0%
AACCAACTAAAGAGGAAAGC+AGG + Chr2:80318572-80318591 None:intergenic 40.0%
AATCAGACTCGTTGTTGAGT+TGG + Chr2:80317535-80317554 None:intergenic 40.0%
ACTTAGATTTAGGCCCTGTT+AGG + Chr2:80318403-80318422 None:intergenic 40.0%
ATATCAACATCACAAGGCCA+CGG + Chr2:80319695-80319714 None:intergenic 40.0%
ATCCTGCTTTCCTCTTTAGT+TGG - Chr2:80318567-80318586 MsG0280011156.01.T01:intron 40.0%
CATTGGAAGAAACCCTATCT+GGG - Chr2:80317583-80317602 MsG0280011156.01.T01:three_prime_UTR 40.0%
GAAACAACAAAGATGACGAG+TGG - Chr2:80319338-80319357 MsG0280011156.01.T01:intron 40.0%
GAGTTTGACCAGTATCCAAA+GGG - Chr2:80319199-80319218 MsG0280011156.01.T01:intron 40.0%
GCAAGGTCTAAAGACAATAG+AGG - Chr2:80319430-80319449 MsG0280011156.01.T01:intron 40.0%
TAGCAAAGAAAGTGAGGATG+AGG - Chr2:80319267-80319286 MsG0280011156.01.T01:intron 40.0%
TCATCCTCACTTTCTTTGCT+AGG + Chr2:80319268-80319287 None:intergenic 40.0%
TCATTGGAAGAAACCCTATC+TGG - Chr2:80317582-80317601 MsG0280011156.01.T01:three_prime_UTR 40.0%
TGAGTTTGACCAGTATCCAA+AGG - Chr2:80319198-80319217 MsG0280011156.01.T01:intron 40.0%
TGATGAAGAAGATGAGGATG+AGG - Chr2:80319549-80319568 MsG0280011156.01.T01:CDS 40.0%
TTGGGAAAGGTAAGAAACCT+AGG - Chr2:80319401-80319420 MsG0280011156.01.T01:intron 40.0%
TTTCTTACCTTTCCCAACCT+TGG + Chr2:80319398-80319417 None:intergenic 40.0%
! GAAATGGGTCATTTGGAACT+TGG - Chr2:80317650-80317669 MsG0280011156.01.T01:exon 40.0%
! GCCAATGACATTTTCTTAGC+AGG - Chr2:80317966-80317985 MsG0280011156.01.T01:CDS 40.0%
! TGAGGATGAGGATGATTTTG+AGG - Chr2:80319279-80319298 MsG0280011156.01.T01:intron 40.0%
!! GCTATTTTCACAAGCTAGCA+TGG + Chr2:80318262-80318281 None:intergenic 40.0%
!! GCTATTTTCACAAGCTATCC+TGG + Chr2:80318146-80318165 None:intergenic 40.0%
!! TGATAAGGAACTTGTTGCCA+AGG - Chr2:80319378-80319397 MsG0280011156.01.T01:intron 40.0%
AACAAAGATGACGAGTGGAC+TGG - Chr2:80319343-80319362 MsG0280011156.01.T01:intron 45.0%
ACTCCCAATTCTCCACATTC+CGG + Chr2:80319231-80319250 None:intergenic 45.0%
AGAAGATGACGATGATGCTG+TGG - Chr2:80319621-80319640 MsG0280011156.01.T01:CDS 45.0%
CTGGCTGTGTAACCTTCTAA+GGG - Chr2:80319004-80319023 MsG0280011156.01.T01:intron 45.0%
GATCCGGAATGTGGAGAATT+GGG - Chr2:80319225-80319244 MsG0280011156.01.T01:intron 45.0%
TCTGGCTGTGTAACCTTCTA+AGG - Chr2:80319003-80319022 MsG0280011156.01.T01:intron 45.0%
TGACAATGAGGATGAGGAAG+AGG - Chr2:80319582-80319601 MsG0280011156.01.T01:CDS 45.0%
TGATCCGGAATGTGGAGAAT+TGG - Chr2:80319224-80319243 MsG0280011156.01.T01:intron 45.0%
! AGTATCCAAAGGGCATGATC+CGG - Chr2:80319209-80319228 MsG0280011156.01.T01:intron 45.0%
! TGTCTGCGAAAACACCCTTT+TGG - Chr2:80317687-80317706 MsG0280011156.01.T01:CDS 45.0%
! TGTTTAGATACCAAGTGCCG+TGG - Chr2:80319675-80319694 MsG0280011156.01.T01:CDS 45.0%
!! AAGGAACTTGTTGCCAAGGT+TGG - Chr2:80319382-80319401 MsG0280011156.01.T01:intron 45.0%
!! AGGAACTTGTTGCCAAGGTT+GGG - Chr2:80319383-80319402 MsG0280011156.01.T01:intron 45.0%
ACATTCCGGATCATGCCCTT+TGG + Chr2:80319217-80319236 None:intergenic 50.0%
AGAAACCTAGGTACTCCGCA+AGG - Chr2:80319413-80319432 MsG0280011156.01.T01:intron 50.0%
AGATGACGATGATGCTGTGG+CGG - Chr2:80319624-80319643 MsG0280011156.01.T01:CDS 50.0%
ATGGAGTTCGAAGGCGAAGA+TGG - Chr2:80317410-80317429 MsG0280011156.01.T01:three_prime_UTR 50.0%
CAATGAGGATGAGGAAGAGG+AGG - Chr2:80319585-80319604 MsG0280011156.01.T01:CDS 50.0%
CTTGTTGCCAAGGTTGGGAA+AGG - Chr2:80319388-80319407 MsG0280011156.01.T01:intron 50.0%
GAATTGGGAGTGGTTTCTCG+AGG - Chr2:80319240-80319259 MsG0280011156.01.T01:intron 50.0%
GACAAAACACTGTTCGGACG+AGG - Chr2:80317458-80317477 MsG0280011156.01.T01:three_prime_UTR 50.0%
GATGACGATGATGAGACGCT+AGG - Chr2:80319511-80319530 MsG0280011156.01.T01:intron 50.0%
GGAATGTGGAGAATTGGGAG+TGG - Chr2:80319230-80319249 MsG0280011156.01.T01:intron 50.0%
GGAGCCTAGCAAAGAAAGTG+AGG - Chr2:80319261-80319280 MsG0280011156.01.T01:intron 50.0%
GGATCATGCCCTTTGGATAC+TGG + Chr2:80319210-80319229 None:intergenic 50.0%
GTCTGATTCAGAGCCTCCTA+AGG - Chr2:80317547-80317566 MsG0280011156.01.T01:three_prime_UTR 50.0%
! AAAGGGCATGATCCGGAATG+TGG - Chr2:80319216-80319235 MsG0280011156.01.T01:intron 50.0%
! CGTGATGACGAGAAACAGTG+TGG + Chr2:80317505-80317524 None:intergenic 50.0%
! CTGTGGCGGGGTAAAATCAA+GGG - Chr2:80319638-80319657 MsG0280011156.01.T01:CDS 50.0%
! TGTGGCGGGGTAAAATCAAG+GGG - Chr2:80319639-80319658 MsG0280011156.01.T01:CDS 50.0%
! TTAGACCTTGCGGAGTACCT+AGG + Chr2:80319421-80319440 None:intergenic 50.0%
ACACTGTTCGGACGAGGTTG+CGG - Chr2:80317464-80317483 MsG0280011156.01.T01:three_prime_UTR 55.0%
ATGACGATGATGCTGTGGCG+GGG - Chr2:80319626-80319645 MsG0280011156.01.T01:CDS 55.0%
GACGATGATGAGACGCTAGG+AGG - Chr2:80319514-80319533 MsG0280011156.01.T01:CDS 55.0%
GATGACGATGATGCTGTGGC+GGG - Chr2:80319625-80319644 MsG0280011156.01.T01:CDS 55.0%
TGAGGATGAGGAAGAGGAGG+AGG - Chr2:80319588-80319607 MsG0280011156.01.T01:CDS 55.0%
! GCTGTGGCGGGGTAAAATCA+AGG - Chr2:80319637-80319656 MsG0280011156.01.T01:CDS 55.0%
! GTGGCGGGGTAAAATCAAGG+GGG - Chr2:80319640-80319659 MsG0280011156.01.T01:CDS 55.0%
CATCACAAGGCCACGGCACT+TGG + Chr2:80319688-80319707 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 80317378 80319925 80317378 ID=MsG0280011156.01;Name=MsG0280011156.01
Chr2 mRNA 80317378 80319925 80317378 ID=MsG0280011156.01.T01;Parent=MsG0280011156.01;Name=MsG0280011156.01.T01;_AED=0.27;_eAED=0.27;_QI=32|1|1|1|1|1|2|274|286
Chr2 exon 80317378 80318130 80317378 ID=MsG0280011156.01.T01:exon:17653;Parent=MsG0280011156.01.T01
Chr2 exon 80319512 80319925 80319512 ID=MsG0280011156.01.T01:exon:17652;Parent=MsG0280011156.01.T01
Chr2 five_prime_UTR 80319894 80319925 80319894 ID=MsG0280011156.01.T01:five_prime_utr;Parent=MsG0280011156.01.T01
Chr2 CDS 80319512 80319893 80319512 ID=MsG0280011156.01.T01:cds;Parent=MsG0280011156.01.T01
Chr2 CDS 80317652 80318130 80317652 ID=MsG0280011156.01.T01:cds;Parent=MsG0280011156.01.T01
Chr2 three_prime_UTR 80317378 80317651 80317378 ID=MsG0280011156.01.T01:three_prime_utr;Parent=MsG0280011156.01.T01
Gene Sequence

>MsG0280011156.01.T01

ATGGAGTTCGAAGGCGAAGATGGTTCCAAATTCTCTTTACAAAACAGCGACAAAACACTGTTCGGACGAGGTTGCGGTTTTGATACAAAAGACCACACTGTTTCTCGTCATCACGTTTCGTTCCAACTCAACAACGAGTCTGATTCAGAGCCTCCTAAGGTTTCATTTCAAGTCATTGGAAGAAACCCTATCTGGGTTTTGAAGAACAATGACGAAACGCTCAAGATTTTCAAGAAATTCGAAATGGGTCATTTGGAACTTGGTGACCGATTTTGCTTGTCTGCGAAAACACCCTTTTGGTTCAATTTGAAGAAGAGTGAAGATTCTGAGAGTGAGATTGAATTTGATCAACTTGATATTTCACAAATTGATCCTGTTAAAGAGTTTGGTTTTCTTGTTATGAGGCATGAGTTTGACCAGTATCCAAAGGGCATGATCCGGAATGTGGAGAATTGGGAGTGGTTTCTCGAGGAGCCTAGCAAAGAAAGTGAGGATGAGGATGATTTTGAGGATAAAAGGAAAATGAAGGGAAAGCGAAAAGTATTTAGAAACAACAAAGATGACGAGTGGACTGGTGATAGTGAAGATGATAAGGAACTTGTTGCCAAGGTTGGGAAAGGTAAGAAACCTAGGTACTCCGCAAGGTCTAAAGACAATAGAGGACCTAAGAGAGATATCAAAGATACCAGTGTGGATGAAAATGATGAAGAAGATGATGACGATGACGATGATGAGACGCTAGGAGGCTTCATTGTTACTGATGAAGAAGATGAGGATGAGGAACAAAACAATGACAATGAGGATGAGGAAGAGGAGGAGGAGTTTGAAGAAGAAGATGACGATGATGCTGTGGCGGGGTAA

Protein sequence

>MsG0280011156.01.T01

MEFEGEDGSKFSLQNSDKTLFGRGCGFDTKDHTVSRHHVSFQLNNESDSEPPKVSFQVIGRNPIWVLKNNDETLKIFKKFEMGHLELGDRFCLSAKTPFWFNLKKSEDSESEIEFDQLDISQIDPVKEFGFLVMRHEFDQYPKGMIRNVENWEWFLEEPSKESEDEDDFEDKRKMKGKRKVFRNNKDDEWTGDSEDDKELVAKVGKGKKPRYSARSKDNRGPKRDIKDTSVDENDEEDDDDDDDETLGGFIVTDEEDEDEEQNNDNEDEEEEEEFEEEDDDDAVAG*