AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021274.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021274.01.T01 MTR_4g070570 92.169 166 13 0 125 290 138 303 1.90e-101 299
MsG0480021274.01.T01 MTR_4g070550 50.777 193 25 4 1 131 219 403 1.76e-44 155
MsG0480021274.01.T01 MTR_3g116950 51.685 178 75 5 118 290 125 296 3.09e-43 150
MsG0480021274.01.T01 MTR_4g070590 52.976 168 71 5 125 290 140 301 3.83e-42 147
MsG0480021274.01.T01 MTR_3g116920 45.631 206 95 5 90 290 105 298 6.60e-41 144
MsG0480021274.01.T01 MTR_2g028140 48.454 194 37 5 1 131 225 418 2.26e-40 145
MsG0480021274.01.T01 MTR_1g068905 49.600 125 42 3 10 119 188 306 1.75e-28 111
MsG0480021274.01.T01 MTR_2g028120 72.059 68 17 2 53 119 10 76 9.86e-28 102
MsG0480021274.01.T01 MTR_2g026010 40.488 205 46 11 1 131 196 398 2.08e-24 101
MsG0480021274.01.T01 MTR_2g028160 60.227 88 27 2 52 131 333 420 4.44e-23 98.2
MsG0480021274.01.T01 MTR_2g028160 83.333 54 9 0 1 54 221 274 1.35e-21 94.0
MsG0480021274.01.T01 MTR_1g068875 60.000 80 27 1 52 131 306 380 9.41e-23 97.1
MsG0480021274.01.T01 MTR_0667s0010 61.798 89 24 3 52 131 322 409 1.21e-22 97.1
MsG0480021274.01.T01 MTR_0667s0010 58.491 53 19 2 1 52 210 260 5.77e-11 62.8
MsG0480021274.01.T01 MTR_2g426060 60.976 82 30 1 52 131 328 409 1.86e-22 96.7
MsG0480021274.01.T01 MTR_2g426090 59.770 87 28 1 52 131 326 412 8.70e-22 94.7
MsG0480021274.01.T01 MTR_1g068835 60.000 80 27 1 52 131 307 381 1.02e-21 94.0
MsG0480021274.01.T01 MTR_4g070540 38.843 121 72 1 170 290 178 296 2.45e-21 91.7
MsG0480021274.01.T01 MTR_4g070530 36.250 160 94 3 132 290 144 296 7.43e-21 90.5
MsG0480021274.01.T01 MTR_2g031680 56.098 82 34 1 52 131 308 389 1.55e-20 90.9
MsG0480021274.01.T01 MTR_2g426070 61.111 72 28 0 52 123 329 400 1.82e-20 90.9
MsG0480021274.01.T01 MTR_2g031720 57.317 82 33 1 52 131 315 396 2.42e-20 90.5
MsG0480021274.01.T01 MTR_2g031720 58.333 60 16 1 1 60 199 249 4.94e-13 68.9
MsG0480021274.01.T01 MTR_2g024100 56.250 80 28 2 52 124 326 405 1.12e-19 88.6
MsG0480021274.01.T01 MTR_2g031700 45.378 119 38 4 1 119 196 287 1.65e-19 86.7
MsG0480021274.01.T01 MTR_2g031640 36.264 182 53 5 1 119 197 378 4.68e-19 86.7
MsG0480021274.01.T01 MTR_8g099460 53.488 86 31 3 54 131 319 403 1.26e-18 85.5
MsG0480021274.01.T01 MTR_2g028110 57.353 68 29 0 52 119 309 376 1.38e-18 85.1
MsG0480021274.01.T01 MTR_2g025420 53.409 88 32 3 52 131 338 424 2.43e-17 82.0
MsG0480021274.01.T01 MTR_2g425980 54.167 72 33 0 52 123 328 399 5.79e-17 80.9
MsG0480021274.01.T01 MTR_2g028130 53.947 76 27 3 52 119 331 406 1.27e-15 77.0
MsG0480021274.01.T01 MTR_2g028130 59.259 54 20 1 1 54 221 272 4.80e-13 69.3
MsG0480021274.01.T01 MTR_5g023460 32.317 164 95 5 126 288 42 190 1.81e-15 73.6
MsG0480021274.01.T01 MTR_2g426020 51.471 68 33 0 56 123 332 399 3.16e-15 75.5
MsG0480021274.01.T01 MTR_5g023550 31.325 166 102 5 126 290 130 284 5.56e-15 73.9
MsG0480021274.01.T01 MTR_2g021050 54.321 81 28 3 52 123 302 382 5.67e-15 74.7
MsG0480021274.01.T01 MTR_8g074530 33.884 121 79 1 168 288 184 303 8.84e-15 73.6
MsG0480021274.01.T01 MTR_2g025960 50.667 75 30 1 52 119 231 305 2.55e-13 69.3
MsG0480021274.01.T01 MTR_5g023600 31.515 165 99 6 126 288 131 283 2.70e-13 68.9
MsG0480021274.01.T01 MTR_5g023340 30.488 164 102 4 126 288 131 283 2.86e-13 68.9
MsG0480021274.01.T01 MTR_5g023390 30.488 164 102 5 126 288 131 283 3.27e-13 68.9
MsG0480021274.01.T01 MTR_5g023530 31.098 164 102 5 126 288 131 284 3.53e-13 68.9
MsG0480021274.01.T01 MTR_2g025440 50.667 75 29 2 52 119 57 130 4.08e-13 67.8
MsG0480021274.01.T01 MTR_5g023470 31.098 164 102 5 126 288 131 284 5.71e-13 68.2
MsG0480021274.01.T01 MTR_5g023370 30.488 164 102 5 126 288 131 283 9.67e-13 67.4
MsG0480021274.01.T01 MTR_3g083010 50.000 80 32 2 52 123 337 416 1.21e-12 68.2
MsG0480021274.01.T01 MTR_5g023290 33.333 126 78 3 169 288 182 307 1.63e-12 67.0
MsG0480021274.01.T01 MTR_8g074450 30.488 164 108 3 126 288 130 288 3.00e-12 66.2
MsG0480021274.01.T01 MTR_5g023320 28.049 164 103 4 126 288 132 281 6.73e-12 65.1
MsG0480021274.01.T01 MTR_5g023580 29.268 164 106 4 126 287 131 286 8.28e-12 65.5
MsG0480021274.01.T01 MTR_5g023350 29.268 164 104 5 126 288 131 283 1.55e-11 63.9
MsG0480021274.01.T01 MTR_8g074420 28.049 164 112 3 126 288 130 288 1.75e-11 63.9
MsG0480021274.01.T01 MTR_1g068860 47.887 71 32 1 49 119 306 371 2.87e-11 63.9
MsG0480021274.01.T01 MTR_8g074510 28.800 125 88 1 164 288 163 286 4.12e-11 62.8
MsG0480021274.01.T01 MTR_5g023520 30.539 167 99 8 126 288 130 283 7.03e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021274.01.T01 AT2G17080 39.306 173 78 9 118 290 118 263 2.37e-17 80.1
MsG0480021274.01.T01 AT4G35200 40.602 133 62 5 155 287 138 253 1.49e-16 77.8
MsG0480021274.01.T01 AT2G17070 36.416 173 83 9 118 290 118 263 1.28e-14 72.8
MsG0480021274.01.T01 AT4G35690 33.962 159 86 6 136 290 141 284 6.28e-12 65.1

Find 46 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAACCAATTGGAAAATT+TGG 0.112535 4:-56180599 MsG0480021274.01.T01:CDS
GTTCCTCTTTCTGATGAAAT+AGG 0.212578 4:-56186507 MsG0480021274.01.T01:CDS
AATCGAAACCAAGTAATTAT+TGG 0.313179 4:-56180765 MsG0480021274.01.T01:CDS
AGAATTCTAGTTCTCTTCAC+TGG 0.316882 4:-56186608 MsG0480021274.01.T01:CDS
TTCCTCTTTCTGATGAAATA+GGG 0.332018 4:-56186506 MsG0480021274.01.T01:CDS
TTCTTACTACGATTATCAAC+AGG 0.333646 4:+56186131 None:intergenic
TTTCCAATTGGTTCTGCAAA+TGG 0.372133 4:+56180605 None:intergenic
ATTATCTCCTAGCAACAATA+AGG 0.373881 4:-56180887 MsG0480021274.01.T01:CDS
CAAAGCTTTCGAGAATTTGA+AGG 0.377485 4:-56180938 MsG0480021274.01.T01:CDS
ACAGTCTCAATTTAAATTCT+CGG 0.378698 4:+56185649 None:intergenic
TCAAATTCTCGAAAGCTTTG+AGG 0.386785 4:+56180941 None:intergenic
TAGATGTTGTGAATCTGTTT+TGG 0.392158 4:-56186250 MsG0480021274.01.T01:CDS
ACCAAGGACCAATAATTACT+TGG 0.401947 4:+56180757 None:intergenic
CAACCATTTGCAGAACCAAT+TGG 0.402937 4:-56180608 MsG0480021274.01.T01:CDS
CAGTCTCAATTTAAATTCTC+GGG 0.414519 4:+56185650 None:intergenic
ACCAAGTAATTATTGGTCCT+TGG 0.430617 4:-56180758 MsG0480021274.01.T01:CDS
AGAATTAAATCAGATTGAAA+TGG 0.444078 4:+56186564 None:intergenic
AGTGATTACTCTTTCAATGT+TGG 0.451606 4:-56180821 MsG0480021274.01.T01:CDS
TTTAATCTTTATATCTGGAC+CGG 0.469654 4:-56180791 MsG0480021274.01.T01:CDS
TCCCCTATTTCATCAGAAAG+AGG 0.477458 4:+56186504 None:intergenic
GTCTGTTGTTCAAGGGTTTG+TGG 0.488801 4:-56180575 MsG0480021274.01.T01:CDS
CGATTATCAACAGGGAAGTA+AGG 0.495910 4:+56186140 None:intergenic
GAATTCTAGTTCTCTTCACT+GGG 0.497928 4:-56186607 MsG0480021274.01.T01:CDS
ATTTGGAGTCTGTTGTTCAA+GGG 0.504312 4:-56180582 MsG0480021274.01.T01:CDS
ATTTATACAACTAGTGATCA+AGG 0.515160 4:+56180494 None:intergenic
TTGAAGGCAAATGTGAAGAA+AGG 0.526216 4:-56180922 MsG0480021274.01.T01:CDS
TCATGATCCTTATTGTTGCT+AGG 0.526232 4:+56180880 None:intergenic
AAGACTTCCAACACAAATCA+TGG 0.527264 4:+56186169 None:intergenic
GCTTATGATGCAGAACAAGA+AGG 0.533958 4:-56180728 MsG0480021274.01.T01:CDS
AATTTGGAGTCTGTTGTTCA+AGG 0.538470 4:-56180583 MsG0480021274.01.T01:CDS
AGAATCCTACAAGCGAGAAA+AGG 0.540089 4:-56186106 MsG0480021274.01.T01:intron
GGTTAGTTTGTTAAGAGATG+TGG 0.540144 4:-56180845 MsG0480021274.01.T01:CDS
TCCTCTTTCTGATGAAATAG+GGG 0.547768 4:-56186505 MsG0480021274.01.T01:CDS
TGTTGATAATCGTAGTAAGA+AGG 0.569589 4:-56186129 MsG0480021274.01.T01:CDS
CAAATGTGAAGAAAGGCAAA+GGG 0.570779 4:-56180915 MsG0480021274.01.T01:CDS
CATTGAAAGTCTCAAGTGAA+AGG 0.571970 4:+56186532 None:intergenic
TTCACTTGAGACTTTCAATG+AGG 0.573205 4:-56186529 MsG0480021274.01.T01:CDS
CTCTTCACTGGGTTGCGTCG+AGG 0.574860 4:-56186596 MsG0480021274.01.T01:CDS
AATGACGCCATGATTTGTGT+TGG 0.583391 4:-56186176 MsG0480021274.01.T01:CDS
CATCATAAGCTTTGAAACCA+AGG 0.589484 4:+56180741 None:intergenic
AGTGATCAAGGACATTGAGA+AGG 0.590750 4:+56180506 None:intergenic
GCAAATGTGAAGAAAGGCAA+AGG 0.596658 4:-56180916 MsG0480021274.01.T01:CDS
GTGATCAAGGACATTGAGAA+GGG 0.601434 4:+56180507 None:intergenic
TTACTTGGTTTCGATTGCGC+CGG 0.602841 4:+56180772 None:intergenic
TCTTACTACGATTATCAACA+GGG 0.687246 4:+56186132 None:intergenic
TTATCAACAGGGAAGTAAGG+TGG 0.703355 4:+56186143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTATGTATGATAATA+AGG + Chr4:56181899-56181918 None:intergenic 10.0%
!! ATAGTGAATATTATTATATA+AGG - Chr4:56185984-56186003 MsG0480021274.01.T01:intron 10.0%
!!! AATTATAAATTTTCAGAAAA+AGG + Chr4:56182503-56182522 None:intergenic 10.0%
!!! TCTTGATTAAATAATTTTAT+AGG + Chr4:56182854-56182873 None:intergenic 10.0%
!!! TGATATATTACTATTTTTAA+TGG - Chr4:56181677-56181696 MsG0480021274.01.T01:intron 10.0%
!! AAAATATTGAAAAATTCTGA+AGG - Chr4:56185141-56185160 MsG0480021274.01.T01:intron 15.0%
!! AAATAATAAATATGCAACAA+CGG + Chr4:56182090-56182109 None:intergenic 15.0%
!! AAATTGAAGAAAAAAATTCA+AGG - Chr4:56183225-56183244 MsG0480021274.01.T01:intron 15.0%
!! AATTGAAGAAAAAAATTCAA+GGG - Chr4:56183226-56183245 MsG0480021274.01.T01:intron 15.0%
!! GATATAATTTCATACTAATT+AGG - Chr4:56184871-56184890 MsG0480021274.01.T01:intron 15.0%
!! TAAATAACTATGCATAAAAT+TGG + Chr4:56181368-56181387 None:intergenic 15.0%
!!! TAAAATTTGTTAGTTTAGTT+AGG + Chr4:56183095-56183114 None:intergenic 15.0%
!!! TTATTTATTTTGTTTTTGCT+CGG - Chr4:56182443-56182462 MsG0480021274.01.T01:intron 15.0%
!! AAAATGATTTGAGTATCAAA+AGG + Chr4:56182760-56182779 None:intergenic 20.0%
!! AAAGATACTAAAATTGATGT+TGG - Chr4:56180719-56180738 MsG0480021274.01.T01:CDS 20.0%
!! AAGATACTAAAATTGATGTT+GGG - Chr4:56180720-56180739 MsG0480021274.01.T01:CDS 20.0%
!! AATATAGAGTTTAATGTCAA+AGG + Chr4:56181104-56181123 None:intergenic 20.0%
!! AGAATTAAATCAGATTGAAA+TGG + Chr4:56180567-56180586 None:intergenic 20.0%
!! GACATTAAACTCTATATTAT+AGG - Chr4:56181106-56181125 MsG0480021274.01.T01:intron 20.0%
!! GATAAACAAATTTCAACAAT+CGG + Chr4:56182328-56182347 None:intergenic 20.0%
!! TATAAGTTATATCAGTTCAA+TGG - Chr4:56181077-56181096 MsG0480021274.01.T01:intron 20.0%
!! TATGTTTGATTATTGAAAGA+AGG - Chr4:56185561-56185580 MsG0480021274.01.T01:intron 20.0%
!! TATTCCCTAAAAAAAATTGA+GGG - Chr4:56184777-56184796 MsG0480021274.01.T01:intron 20.0%
!! TTTAAACTAAATGACTTTGT+CGG - Chr4:56183370-56183389 MsG0480021274.01.T01:intron 20.0%
!!! ATCTTATTTCTTATATCTTC+AGG - Chr4:56181829-56181848 MsG0480021274.01.T01:intron 20.0%
!!! GTATCTCATTTAAAATAGTA+TGG + Chr4:56182010-56182029 None:intergenic 20.0%
!!! TAGCTTGTATATAATACAAA+AGG + Chr4:56183269-56183288 None:intergenic 20.0%
!!! TCACTTTTAATCTTTATATC+TGG - Chr4:56186332-56186351 MsG0480021274.01.T01:intron 20.0%
!!! TCTTATTTCTTATATCTTCA+GGG - Chr4:56181830-56181849 MsG0480021274.01.T01:intron 20.0%
!!! TTAGTTTGCTATATATATGA+AGG - Chr4:56184941-56184960 MsG0480021274.01.T01:intron 20.0%
!!! TTTTCCTTTGTTTATGTATA+TGG - Chr4:56181180-56181199 MsG0480021274.01.T01:intron 20.0%
!!! TTTTTTATATCAATTGTCTC+CGG + Chr4:56182147-56182166 None:intergenic 20.0%
!!! TTTTTTCTTCTTTTCTGTTA+TGG - Chr4:56182118-56182137 MsG0480021274.01.T01:intron 20.0%
! AAAATTGAGATAGAGAAAGA+TGG + Chr4:56182387-56182406 None:intergenic 25.0%
! AAATGAAGGATATTTAAGAG+TGG - Chr4:56183688-56183707 MsG0480021274.01.T01:intron 25.0%
! AAATTCTAATTGTTAGTTGC+TGG - Chr4:56182264-56182283 MsG0480021274.01.T01:intron 25.0%
! AATATTGACATCTACATTGA+CGG + Chr4:56181754-56181773 None:intergenic 25.0%
! AATCGAAACCAAGTAATTAT+TGG - Chr4:56186363-56186382 MsG0480021274.01.T01:intron 25.0%
! ACAGGAATGTAATGAAAAAT+CGG - Chr4:56185274-56185293 MsG0480021274.01.T01:intron 25.0%
! ACAGTCTCAATTTAAATTCT+CGG + Chr4:56181482-56181501 None:intergenic 25.0%
! ACTAAGAATGAGTTAAATGA+AGG - Chr4:56183674-56183693 MsG0480021274.01.T01:intron 25.0%
! ATAAAATTGGAGTAAGTTCA+TGG + Chr4:56181355-56181374 None:intergenic 25.0%
! ATCTCAGAAAATTCAAAAAG+AGG + Chr4:56181628-56181647 None:intergenic 25.0%
! ATCTTCAGAAACTGTTATAT+TGG + Chr4:56184577-56184596 None:intergenic 25.0%
! ATTAATCGGGAATTCAATAT+TGG - Chr4:56181973-56181992 MsG0480021274.01.T01:intron 25.0%
! ATTACATTCATGTACAGTTA+TGG + Chr4:56185948-56185967 None:intergenic 25.0%
! ATTCAAAAAGAGGGATAAAA+TGG + Chr4:56181618-56181637 None:intergenic 25.0%
! ATTGCCATATACATAAACAA+AGG + Chr4:56181187-56181206 None:intergenic 25.0%
! CAAAACTCAGTTAAACAATA+AGG + Chr4:56181052-56181071 None:intergenic 25.0%
! CTATTCCCTAAAAAAAATTG+AGG - Chr4:56184776-56184795 MsG0480021274.01.T01:intron 25.0%
! GTAGATGTCAATATTGAAAA+TGG - Chr4:56181759-56181778 MsG0480021274.01.T01:intron 25.0%
! TAATTCTAATTCCAAAGTAG+AGG + Chr4:56183737-56183756 None:intergenic 25.0%
! TCACATTGAATTCTTATCAT+AGG - Chr4:56181129-56181148 MsG0480021274.01.T01:intron 25.0%
! TCATATTATTACCTCTACTT+TGG - Chr4:56183723-56183742 MsG0480021274.01.T01:intron 25.0%
! TCTCAGAAAATTCAAAAAGA+GGG + Chr4:56181627-56181646 None:intergenic 25.0%
! TTCAAAAAGAGGGATAAAAT+GGG + Chr4:56181617-56181636 None:intergenic 25.0%
! TTTAATCTTTATATCTGGAC+CGG - Chr4:56186337-56186356 MsG0480021274.01.T01:intron 25.0%
! TTTCTATTGTGAGAATAAGA+TGG + Chr4:56183542-56183561 None:intergenic 25.0%
!! AATTAGAATTTTCTTCAACC+CGG + Chr4:56182255-56182274 None:intergenic 25.0%
!! AGAGTTATATTGTCTTTTTG+AGG + Chr4:56185536-56185555 None:intergenic 25.0%
!! ATATGATCTTTCTGAAGATT+TGG - Chr4:56182173-56182192 MsG0480021274.01.T01:intron 25.0%
!! ATATGCTCATTTGACTTATT+TGG - Chr4:56183151-56183170 MsG0480021274.01.T01:intron 25.0%
!! GAGTTATATTGTCTTTTTGA+GGG + Chr4:56185535-56185554 None:intergenic 25.0%
!! GTTAAGAATTTTGCACATAT+AGG + Chr4:56184208-56184227 None:intergenic 25.0%
!! TAAAGTTGTCGTTTACATAT+TGG - Chr4:56181325-56181344 MsG0480021274.01.T01:intron 25.0%
!! TATGCTCATTTGACTTATTT+GGG - Chr4:56183152-56183171 MsG0480021274.01.T01:intron 25.0%
!! TGATACTCAAATCATTTTCA+AGG - Chr4:56182762-56182781 MsG0480021274.01.T01:intron 25.0%
!! TTGAAAACTGTAGTTTTTGT+TGG + Chr4:56184974-56184993 None:intergenic 25.0%
!! TTTTCATCTGCTTGATATAT+AGG - Chr4:56183600-56183619 MsG0480021274.01.T01:intron 25.0%
!!! ATGAATAACAAAGTTTTGGT+TGG - Chr4:56184167-56184186 MsG0480021274.01.T01:intron 25.0%
!!! ATTACTATTTTTAATGGAGC+TGG - Chr4:56181683-56181702 MsG0480021274.01.T01:intron 25.0%
!!! GTTTATCATTTTTCCCAAAA+CGG - Chr4:56182341-56182360 MsG0480021274.01.T01:intron 25.0%
!!! TAGCGTTGATTTTGATAAAA+TGG + Chr4:56184759-56184778 None:intergenic 25.0%
!!! TCATCCCTCAATTTTTTTTA+GGG + Chr4:56184784-56184803 None:intergenic 25.0%
!!! TTAGGTTGAATTGATAATGA+TGG - Chr4:56181584-56181603 MsG0480021274.01.T01:intron 25.0%
!!! TTTACCACTCATATTTTGAA+GGG + Chr4:56184261-56184280 None:intergenic 25.0%
!!! TTTTACCACTCATATTTTGA+AGG + Chr4:56184262-56184281 None:intergenic 25.0%
AAAAAAATTGAGGGATGAGT+TGG - Chr4:56184786-56184805 MsG0480021274.01.T01:intron 30.0%
AAAATATTCCTTACGATGTG+AGG + Chr4:56183303-56183322 None:intergenic 30.0%
AATATGGATGTAGAGATAGT+TGG - Chr4:56180752-56180771 MsG0480021274.01.T01:CDS 30.0%
AATTCATTGTGTCTGATTCT+TGG + Chr4:56185714-56185733 None:intergenic 30.0%
ACAGTCGATTAACAAATCAA+TGG - Chr4:56183848-56183867 MsG0480021274.01.T01:intron 30.0%
ACTATATACTTGACATTGAC+AGG + Chr4:56182725-56182744 None:intergenic 30.0%
ACTTGAAAGTTACTCAACTT+AGG - Chr4:56184290-56184309 MsG0480021274.01.T01:intron 30.0%
AGTAATTGAAACTGGATTCA+CGG - Chr4:56185410-56185429 MsG0480021274.01.T01:intron 30.0%
AGTGATTACTCTTTCAATGT+TGG - Chr4:56186307-56186326 MsG0480021274.01.T01:intron 30.0%
ATAGAAACCTACAATGTTCT+CGG - Chr4:56183568-56183587 MsG0480021274.01.T01:intron 30.0%
ATCCTTATGATAACTCTCAA+AGG + Chr4:56184047-56184066 None:intergenic 30.0%
ATGATACAGACAAGTAATCA+AGG + Chr4:56183189-56183208 None:intergenic 30.0%
ATTATCTCCTAGCAACAATA+AGG - Chr4:56186241-56186260 MsG0480021274.01.T01:CDS 30.0%
ATTATGAGAAGAAAAAGAGG+AGG - Chr4:56186099-56186118 MsG0480021274.01.T01:intron 30.0%
ATTCATTGTGTCTGATTCTT+GGG + Chr4:56185713-56185732 None:intergenic 30.0%
CAATGTCAAGTATATAGTGT+AGG - Chr4:56182727-56182746 MsG0480021274.01.T01:intron 30.0%
CAGTCTCAATTTAAATTCTC+GGG + Chr4:56181481-56181500 None:intergenic 30.0%
CATGTTTCATTAACATGTGA+AGG + Chr4:56184469-56184488 None:intergenic 30.0%
CATTATGCATGCATTGTAAA+GGG + Chr4:56184701-56184720 None:intergenic 30.0%
CTATTGTGAGATAGAACAAA+GGG + Chr4:56183994-56184013 None:intergenic 30.0%
CTATTTATCTCTGATCCTAA+AGG - Chr4:56185620-56185639 MsG0480021274.01.T01:intron 30.0%
GCAAAATGATATAGACACTA+TGG + Chr4:56185898-56185917 None:intergenic 30.0%
TAAATTGAGACTGTAAGTGA+TGG - Chr4:56181488-56181507 MsG0480021274.01.T01:intron 30.0%
TATTGTGAGATAGAACAAAG+GGG + Chr4:56183993-56184012 None:intergenic 30.0%
TATTTGTGAAAAGGTCAACA+AGG - Chr4:56183479-56183498 MsG0480021274.01.T01:intron 30.0%
TCGATTATGAGAAGAAAAAG+AGG - Chr4:56186096-56186115 MsG0480021274.01.T01:intron 30.0%
TCTTACTACGATTATCAACA+GGG + Chr4:56180999-56181018 None:intergenic 30.0%
TGAATTCTTATCATAGGACA+AGG - Chr4:56181135-56181154 MsG0480021274.01.T01:intron 30.0%
TGATATAGACACTATGGTTA+TGG + Chr4:56185892-56185911 None:intergenic 30.0%
TGCATTCAAGATCTAGAAAT+AGG - Chr4:56185807-56185826 MsG0480021274.01.T01:intron 30.0%
TTAACCCTTCAAAATATGAG+TGG - Chr4:56184254-56184273 MsG0480021274.01.T01:intron 30.0%
TTATTCCACTGATGGAAAAA+AGG - Chr4:56180843-56180862 MsG0480021274.01.T01:CDS 30.0%
TTCCTCTTTCTGATGAAATA+GGG - Chr4:56180622-56180641 MsG0480021274.01.T01:CDS 30.0%
TTCTGACAAGTCATATAACT+AGG - Chr4:56181940-56181959 MsG0480021274.01.T01:intron 30.0%
TTCTTACTACGATTATCAAC+AGG + Chr4:56181000-56181019 None:intergenic 30.0%
TTCTTGTGTATACATCCTTT+CGG - Chr4:56182537-56182556 MsG0480021274.01.T01:intron 30.0%
TTGTTCACTGCTAGTAATAT+AGG + Chr4:56183792-56183811 None:intergenic 30.0%
! AAATTAATGGATGTCTAGCT+GGG - Chr4:56184516-56184535 MsG0480021274.01.T01:intron 30.0%
! AACTGATAGTGTAGAATTGA+AGG - Chr4:56182650-56182669 MsG0480021274.01.T01:intron 30.0%
! ATCCTTTGAGAGTTATCATA+AGG - Chr4:56184042-56184061 MsG0480021274.01.T01:intron 30.0%
! ATGCATTGGTATTTGTGAAA+AGG - Chr4:56183470-56183489 MsG0480021274.01.T01:intron 30.0%
! GAAACTGTTATATTGGTTAC+TGG + Chr4:56184570-56184589 None:intergenic 30.0%
! GTGTAAAATACATGGCTTTT+AGG - Chr4:56185439-56185458 MsG0480021274.01.T01:intron 30.0%
! TAAATTAATGGATGTCTAGC+TGG - Chr4:56184515-56184534 MsG0480021274.01.T01:intron 30.0%
! TAGATGTTGTGAATCTGTTT+TGG - Chr4:56180878-56180897 MsG0480021274.01.T01:CDS 30.0%
! TCTTTCTGAAGATTTGGTTT+AGG - Chr4:56182179-56182198 MsG0480021274.01.T01:intron 30.0%
! TGCGATGAATAACAAAGTTT+TGG - Chr4:56184163-56184182 MsG0480021274.01.T01:intron 30.0%
! TTAGAGGGGTTTGAAATATA+GGG - Chr4:56184358-56184377 MsG0480021274.01.T01:intron 30.0%
! TTGGTGTAAACTTTTTACTG+TGG - Chr4:56180771-56180790 MsG0480021274.01.T01:CDS 30.0%
! TTTAGAGGGGTTTGAAATAT+AGG - Chr4:56184357-56184376 MsG0480021274.01.T01:intron 30.0%
! TTTTCTTCCTATCCTTGAAA+TGG - Chr4:56182404-56182423 MsG0480021274.01.T01:intron 30.0%
!! TAAATTCGTGTTGCTGATTT+AGG - Chr4:56180668-56180687 MsG0480021274.01.T01:CDS 30.0%
!! TGTTGATAATCGTAGTAAGA+AGG - Chr4:56180999-56181018 MsG0480021274.01.T01:intron 30.0%
!! TGTTTGTGAACTCTAAAATG+AGG - Chr4:56181801-56181820 MsG0480021274.01.T01:intron 30.0%
!!! ATGGAAAAAAGGTTTTGTTG+AGG - Chr4:56180854-56180873 MsG0480021274.01.T01:CDS 30.0%
!!! CTCATCCCTCAATTTTTTTT+AGG + Chr4:56184785-56184804 None:intergenic 30.0%
!!! GAATCTGTTTTGGTATGATT+TGG - Chr4:56180888-56180907 MsG0480021274.01.T01:CDS 30.0%
!!! TGGAAAAAAGGTTTTGTTGA+GGG - Chr4:56180855-56180874 MsG0480021274.01.T01:CDS 30.0%
!!! TGTTTTCCTTTGATAGTGAA+AGG + Chr4:56185360-56185379 None:intergenic 30.0%
AACTTACATCGAATAGTGAC+AGG - Chr4:56183118-56183137 MsG0480021274.01.T01:intron 35.0%
AAGACTTCCAACACAAATCA+TGG + Chr4:56180962-56180981 None:intergenic 35.0%
AATAGATATTCCACGAGCAT+AGG + Chr4:56185599-56185618 None:intergenic 35.0%
AATGGAGGAAGTAACATTGT+GGG - Chr4:56183515-56183534 MsG0480021274.01.T01:intron 35.0%
AATTGTGATACAAGAGAGTG+AGG + Chr4:56185109-56185128 None:intergenic 35.0%
ACATACACAGATATCAACCA+CGG + Chr4:56181297-56181316 None:intergenic 35.0%
ACATGAAGAAGCAAATTCGA+AGG - Chr4:56185466-56185485 MsG0480021274.01.T01:intron 35.0%
ACCAAGGACCAATAATTACT+TGG + Chr4:56186374-56186393 None:intergenic 35.0%
ACCAAGTAATTATTGGTCCT+TGG - Chr4:56186370-56186389 MsG0480021274.01.T01:intron 35.0%
ACCTCCTGAGAAGAAAAAAA+TGG - Chr4:56185021-56185040 MsG0480021274.01.T01:intron 35.0%
ACTTACATCGAATAGTGACA+GGG - Chr4:56183119-56183138 MsG0480021274.01.T01:intron 35.0%
AGAAGGAGAGTAATTGAAAC+TGG - Chr4:56185402-56185421 MsG0480021274.01.T01:intron 35.0%
AGAGTTATCATAAGGATCAG+AGG - Chr4:56184050-56184069 MsG0480021274.01.T01:intron 35.0%
AGGAACTAATTGATGCATGA+TGG + Chr4:56184449-56184468 None:intergenic 35.0%
AGGATTCCTTTCACTATCAA+AGG - Chr4:56185351-56185370 MsG0480021274.01.T01:intron 35.0%
ATAGATATTCCACGAGCATA+GGG + Chr4:56185598-56185617 None:intergenic 35.0%
ATTCCATCACAAGAAACAAC+TGG + Chr4:56181552-56181571 None:intergenic 35.0%
ATTTACCTGTGGAATCTTTG+AGG - Chr4:56180812-56180831 MsG0480021274.01.T01:CDS 35.0%
CAAACTAACTAACCGATTGA+GGG + Chr4:56184929-56184948 None:intergenic 35.0%
CAAAGCTTTCGAGAATTTGA+AGG - Chr4:56186190-56186209 MsG0480021274.01.T01:CDS 35.0%
CAAATGTGAAGAAAGGCAAA+GGG - Chr4:56186213-56186232 MsG0480021274.01.T01:CDS 35.0%
CAACAAACTTAATGGAATGC+AGG - Chr4:56185194-56185213 MsG0480021274.01.T01:intron 35.0%
CAGACACAATGAATTTGAGA+AGG - Chr4:56185719-56185738 MsG0480021274.01.T01:intron 35.0%
CATTGAAAGTCTCAAGTGAA+AGG + Chr4:56180599-56180618 None:intergenic 35.0%
CCCAAACTAAATGACTTTGT+CGG - Chr4:56183342-56183361 MsG0480021274.01.T01:intron 35.0%
CTCTCTTGTATCACAATTTG+AGG - Chr4:56185111-56185130 MsG0480021274.01.T01:intron 35.0%
GAATAAAATGCAGCAGATGA+AGG + Chr4:56182615-56182634 None:intergenic 35.0%
GATTCCACAAGGAACATTTA+TGG + Chr4:56183891-56183910 None:intergenic 35.0%
GCACATAACAAATAAGCACT+GGG - Chr4:56182931-56182950 MsG0480021274.01.T01:intron 35.0%
GCAGAACCAATTGGAAAATT+TGG - Chr4:56186529-56186548 MsG0480021274.01.T01:CDS 35.0%
GCATTATGCATGCATTGTAA+AGG + Chr4:56184702-56184721 None:intergenic 35.0%
GCTATTGTGAGATAGAACAA+AGG + Chr4:56183995-56184014 None:intergenic 35.0%
GGATATCTGTAGTATAGCTA+AGG - Chr4:56185331-56185350 MsG0480021274.01.T01:intron 35.0%
GGATCATGAAAAAGTGACTT+TGG - Chr4:56186262-56186281 MsG0480021274.01.T01:CDS 35.0%
GTCGATTAACAAATCAATGG+TGG - Chr4:56183851-56183870 MsG0480021274.01.T01:intron 35.0%
GTTCCTCTTTCTGATGAAAT+AGG - Chr4:56180621-56180640 MsG0480021274.01.T01:CDS 35.0%
TAAAGATCGAAGACATGCAT+TGG - Chr4:56183456-56183475 MsG0480021274.01.T01:intron 35.0%
TACAGTTATGGAACACTCAT+GGG + Chr4:56185936-56185955 None:intergenic 35.0%
TACTAATTAGGTGACACTTG+AGG - Chr4:56184883-56184902 MsG0480021274.01.T01:intron 35.0%
TAGGTGGATGCTGAATTAAT+CGG - Chr4:56181959-56181978 MsG0480021274.01.T01:intron 35.0%
TATGAAATTGTGCCTACAAC+AGG + Chr4:56184625-56184644 None:intergenic 35.0%
TCAAATTCTCGAAAGCTTTG+AGG + Chr4:56186190-56186209 None:intergenic 35.0%
TCATGATCCTTATTGTTGCT+AGG + Chr4:56186251-56186270 None:intergenic 35.0%
TCCGACAAAGTCATTTAGTT+TGG + Chr4:56183346-56183365 None:intergenic 35.0%
TCCTCTTTCTGATGAAATAG+GGG - Chr4:56180623-56180642 MsG0480021274.01.T01:CDS 35.0%
TCGGTATGCAACAAACTTAA+TGG - Chr4:56185186-56185205 MsG0480021274.01.T01:intron 35.0%
TCTTGTGTATACATCCTTTC+GGG - Chr4:56182538-56182557 MsG0480021274.01.T01:intron 35.0%
TGAAGGATATTTAAGAGTGG+CGG - Chr4:56183691-56183710 MsG0480021274.01.T01:intron 35.0%
TGACAAGTCATATAACTAGG+TGG - Chr4:56181943-56181962 MsG0480021274.01.T01:intron 35.0%
TGCACATAACAAATAAGCAC+TGG - Chr4:56182930-56182949 MsG0480021274.01.T01:intron 35.0%
TGGTAAAAGCTATTTGGCAT+AGG - Chr4:56181703-56181722 MsG0480021274.01.T01:intron 35.0%
TGTTGGGTGATGAAAGAATA+TGG - Chr4:56180736-56180755 MsG0480021274.01.T01:CDS 35.0%
TTCACTTGAGACTTTCAATG+AGG - Chr4:56180599-56180618 MsG0480021274.01.T01:CDS 35.0%
TTCATTACATTCCTGTGCTA+AGG + Chr4:56185270-56185289 None:intergenic 35.0%
TTCATTGTGTCTGATTCTTG+GGG + Chr4:56185712-56185731 None:intergenic 35.0%
TTGAAGGCAAATGTGAAGAA+AGG - Chr4:56186206-56186225 MsG0480021274.01.T01:CDS 35.0%
TTTATATCAATTGTCTCCGG+TGG + Chr4:56182144-56182163 None:intergenic 35.0%
! AAGGTATCTCATGTCAAAAC+AGG + Chr4:56182032-56182051 None:intergenic 35.0%
! AATTTGGAGTCTGTTGTTCA+AGG - Chr4:56186545-56186564 MsG0480021274.01.T01:CDS 35.0%
! ACTGTTATATTGGTTACTGG+TGG + Chr4:56184567-56184586 None:intergenic 35.0%
! ATCAGTTTTACACACACAAG+AGG + Chr4:56181661-56181680 None:intergenic 35.0%
! ATTTGGAGTCTGTTGTTCAA+GGG - Chr4:56186546-56186565 MsG0480021274.01.T01:CDS 35.0%
! ATTTTCCTCATCCACATACT+GGG + Chr4:56184104-56184123 None:intergenic 35.0%
! CAGACTCCAAATTTTCCAAT+TGG + Chr4:56186538-56186557 None:intergenic 35.0%
! CCGACAAAGTCATTTAGTTT+GGG + Chr4:56183345-56183364 None:intergenic 35.0%
! GTCAACAAGGTCACTTATTT+TGG - Chr4:56183492-56183511 MsG0480021274.01.T01:intron 35.0%
! TAGAGGGGTTTGAAATATAG+GGG - Chr4:56184359-56184378 MsG0480021274.01.T01:intron 35.0%
! TCAGAGCACATTTTCCTTTT+AGG - Chr4:56182989-56183008 MsG0480021274.01.T01:intron 35.0%
! TCAGTTTTACACACACAAGA+GGG + Chr4:56181660-56181679 None:intergenic 35.0%
! TCCAAATTTTCAGCAGATGA+AGG + Chr4:56185783-56185802 None:intergenic 35.0%
! TGGAATTAGTCACTTTGGTT+AGG - Chr4:56181566-56181585 MsG0480021274.01.T01:intron 35.0%
! TGTGATGGAATTAGTCACTT+TGG - Chr4:56181561-56181580 MsG0480021274.01.T01:intron 35.0%
!! AATGTGCTCTGAAGTATCAT+AGG + Chr4:56182981-56183000 None:intergenic 35.0%
!! ACAACTGTTTTGTTGAACTC+AGG - Chr4:56182213-56182232 MsG0480021274.01.T01:intron 35.0%
!! ACTCAACTTAGGCTTTGTTT+GGG - Chr4:56184301-56184320 MsG0480021274.01.T01:intron 35.0%
!! AGAATTCTAGTTCTCTTCAC+TGG - Chr4:56180520-56180539 MsG0480021274.01.T01:CDS 35.0%
!! ATCAGTTCTGAACGAATTTC+AGG + Chr4:56182637-56182656 None:intergenic 35.0%
!! CAAAGTCATTTAGTTTGGGA+CGG + Chr4:56183341-56183360 None:intergenic 35.0%
!! CATCATAAGCTTTGAAACCA+AGG + Chr4:56186390-56186409 None:intergenic 35.0%
!! CATGAGATACCTTTGACTTT+TGG - Chr4:56182039-56182058 MsG0480021274.01.T01:intron 35.0%
!! GAATTCTAGTTCTCTTCACT+GGG - Chr4:56180521-56180540 MsG0480021274.01.T01:CDS 35.0%
!! GGTTAGTTTGTTAAGAGATG+TGG - Chr4:56186283-56186302 MsG0480021274.01.T01:CDS 35.0%
!! GGTTGAATTGATAATGATGG+AGG - Chr4:56181587-56181606 MsG0480021274.01.T01:intron 35.0%
!! TACTCAACTTAGGCTTTGTT+TGG - Chr4:56184300-56184319 MsG0480021274.01.T01:intron 35.0%
!! TTTCCAATTGGTTCTGCAAA+TGG + Chr4:56186526-56186545 None:intergenic 35.0%
!!! ACTGCCATTTTTTTCTTCTC+AGG + Chr4:56185028-56185047 None:intergenic 35.0%
!!! CAAAACCTTTTTTCCATCAG+TGG + Chr4:56180851-56180870 None:intergenic 35.0%
!!! CAAGGTCACTTATTTTGGAA+TGG - Chr4:56183497-56183516 MsG0480021274.01.T01:intron 35.0%
!!! CTTTTAGGTTATTCCACTGA+TGG - Chr4:56180835-56180854 MsG0480021274.01.T01:CDS 35.0%
!!! GACCATTGTTGATTCTGTTT+TGG - Chr4:56182477-56182496 MsG0480021274.01.T01:intron 35.0%
!!! GAGATTCATTTTTTCCCACA+GGG - Chr4:56181443-56181462 MsG0480021274.01.T01:intron 35.0%
!!! GGAAGCATCAATTTTCAACA+GGG - Chr4:56181851-56181870 MsG0480021274.01.T01:intron 35.0%
!!! GTGTTTTGATGATTTACCTG+TGG - Chr4:56180801-56180820 MsG0480021274.01.T01:CDS 35.0%
!!! TGAGATTCATTTTTTCCCAC+AGG - Chr4:56181442-56181461 MsG0480021274.01.T01:intron 35.0%
!!! TGCACTGAAGTTTTTTAGCT+AGG + Chr4:56182914-56182933 None:intergenic 35.0%
!!! TTTGTTTTGTCTCCCTCAAT+CGG - Chr4:56184914-56184933 MsG0480021274.01.T01:intron 35.0%
!!! TTTTTGCTCGGTTGATTTGT+AGG - Chr4:56182455-56182474 MsG0480021274.01.T01:intron 35.0%
AAAAGCCTCAAAGATTCCAC+AGG + Chr4:56180820-56180839 None:intergenic 40.0%
AAGAAAAAGAGGAGGCGAAA+TGG - Chr4:56186107-56186126 MsG0480021274.01.T01:CDS 40.0%
ACAGTTATGGAACACTCATG+GGG + Chr4:56185935-56185954 None:intergenic 40.0%
ACCTACTAGAAGGTTCACTT+AGG - Chr4:56185303-56185322 MsG0480021274.01.T01:intron 40.0%
AGAATCCTACAAGCGAGAAA+AGG - Chr4:56181022-56181041 MsG0480021274.01.T01:intron 40.0%
AGGTGGATGCTGAATTAATC+GGG - Chr4:56181960-56181979 MsG0480021274.01.T01:intron 40.0%
AGTGATCAAGGACATTGAGA+AGG + Chr4:56186625-56186644 None:intergenic 40.0%
CAACCATTTGCAGAACCAAT+TGG - Chr4:56186520-56186539 MsG0480021274.01.T01:CDS 40.0%
CACAAAACCGAGAACATTGT+AGG + Chr4:56183578-56183597 None:intergenic 40.0%
CACTTCTTCGTCATCATCAT+CGG - Chr4:56185167-56185186 MsG0480021274.01.T01:intron 40.0%
CATCTGCTGAAAATTTGGAG+AGG - Chr4:56185784-56185803 MsG0480021274.01.T01:intron 40.0%
CGATTATCAACAGGGAAGTA+AGG + Chr4:56180991-56181010 None:intergenic 40.0%
CGGTGATATCGATGAATTAG+AGG + Chr4:56182308-56182327 None:intergenic 40.0%
GAATGGAGGAAGTAACATTG+TGG - Chr4:56183514-56183533 MsG0480021274.01.T01:intron 40.0%
GCAAACTAACTAACCGATTG+AGG + Chr4:56184930-56184949 None:intergenic 40.0%
GCAAATGTGAAGAAAGGCAA+AGG - Chr4:56186212-56186231 MsG0480021274.01.T01:CDS 40.0%
GCCTTCATCTGCTGAAAATT+TGG - Chr4:56185779-56185798 MsG0480021274.01.T01:intron 40.0%
GCTTATGATGCAGAACAAGA+AGG - Chr4:56186400-56186419 MsG0480021274.01.T01:intron 40.0%
GGCCAAAACAGAATCAACAA+TGG + Chr4:56182482-56182501 None:intergenic 40.0%
GTACAGTTATGGAACACTCA+TGG + Chr4:56185937-56185956 None:intergenic 40.0%
GTGAGAAAATCTTGGCTTCT+AGG - Chr4:56186144-56186163 MsG0480021274.01.T01:CDS 40.0%
GTGATCAAGGACATTGAGAA+GGG + Chr4:56186624-56186643 None:intergenic 40.0%
TACGCCATAAATGTTCCTTG+TGG - Chr4:56183884-56183903 MsG0480021274.01.T01:intron 40.0%
TAGTAGAGAGCTCCATTTCA+AGG + Chr4:56182419-56182438 None:intergenic 40.0%
TCCCCTATTTCATCAGAAAG+AGG + Chr4:56180627-56180646 None:intergenic 40.0%
TGATAACTCTCAAAGGATCG+TGG + Chr4:56184040-56184059 None:intergenic 40.0%
TGATTTCACCTCACATCGTA+AGG - Chr4:56183292-56183311 MsG0480021274.01.T01:intron 40.0%
TGGAGCTGGTAAAAGCTATT+TGG - Chr4:56181697-56181716 MsG0480021274.01.T01:intron 40.0%
TTATCAACAGGGAAGTAAGG+TGG + Chr4:56180988-56181007 None:intergenic 40.0%
! AATGACGCCATGATTTGTGT+TGG - Chr4:56180952-56180971 MsG0480021274.01.T01:CDS 40.0%
! AGAATTTTCTTCAACCCGGT+AGG + Chr4:56182251-56182270 None:intergenic 40.0%
! ATAGAGAAAGATGGTGCCAA+CGG + Chr4:56182378-56182397 None:intergenic 40.0%
! CATTGTAAAGGGAGCTTTGT+TGG + Chr4:56184690-56184709 None:intergenic 40.0%
! CATTTTCCTCATCCACATAC+TGG + Chr4:56184105-56184124 None:intergenic 40.0%
! CTACAATGTTCTCGGTTTTG+TGG - Chr4:56183576-56183595 MsG0480021274.01.T01:intron 40.0%
! GAAAATCTTGGCTTCTAGGA+AGG - Chr4:56186148-56186167 MsG0480021274.01.T01:CDS 40.0%
! GAATTTTCTTCAACCCGGTA+GGG + Chr4:56182250-56182269 None:intergenic 40.0%
! GGATAAATCTGGACCGTTTT+GGG + Chr4:56182357-56182376 None:intergenic 40.0%
! GGTTGAGGGTGTAAAATACA+TGG - Chr4:56185431-56185450 MsG0480021274.01.T01:intron 40.0%
! TTCTTTTCTGTTATGGCCAC+CGG - Chr4:56182125-56182144 MsG0480021274.01.T01:intron 40.0%
! TTGAGACTGTAAGTGATGGA+AGG - Chr4:56181492-56181511 MsG0480021274.01.T01:intron 40.0%
!! AACAAATAAGCACTGGGTAG+TGG - Chr4:56182937-56182956 MsG0480021274.01.T01:intron 40.0%
!! ACAAATAAGCACTGGGTAGT+GGG - Chr4:56182938-56182957 MsG0480021274.01.T01:intron 40.0%
!! ATTCGTGTTGCTGATTTAGG+AGG - Chr4:56180671-56180690 MsG0480021274.01.T01:CDS 40.0%
!! CTGTGTTTTGAGTGTCCTTT+AGG + Chr4:56185638-56185657 None:intergenic 40.0%
!! TTCGTGTTGCTGATTTAGGA+GGG - Chr4:56180672-56180691 MsG0480021274.01.T01:CDS 40.0%
!!! GCCATTTTTTTCTTCTCAGG+AGG + Chr4:56185025-56185044 None:intergenic 40.0%
!!! GGGAAGCATCAATTTTCAAC+AGG - Chr4:56181850-56181869 MsG0480021274.01.T01:intron 40.0%
!!! GGTCACTTATTTTGGAATGG+AGG - Chr4:56183500-56183519 MsG0480021274.01.T01:intron 40.0%
!!! GTGGAATCTTTGAGGCTTTT+AGG - Chr4:56180820-56180839 MsG0480021274.01.T01:CDS 40.0%
AAAAAGAGGAGGCGAAATGG+AGG - Chr4:56186110-56186129 MsG0480021274.01.T01:CDS 45.0%
AAACGAAAGCCTCGCCTAAA+AGG + Chr4:56183006-56183025 None:intergenic 45.0%
AACGGTCCAGATTTATCCGT+TGG - Chr4:56182359-56182378 MsG0480021274.01.T01:intron 45.0%
ACGAGGTCAAAGATTCCACA+AGG + Chr4:56183902-56183921 None:intergenic 45.0%
ACTTGACATTGACAGGACTC+TGG + Chr4:56182718-56182737 None:intergenic 45.0%
AGAAGGTTCACTTAGGCTCT+TGG - Chr4:56185310-56185329 MsG0480021274.01.T01:intron 45.0%
AGCGAAGAGTTTCTCCAAGA+TGG + Chr4:56184081-56184100 None:intergenic 45.0%
AGGAAAGAATAGGCCGTGTA+TGG - Chr4:56184134-56184153 MsG0480021274.01.T01:intron 45.0%
AGGTAATCAACCAACCCTAC+CGG - Chr4:56182233-56182252 MsG0480021274.01.T01:intron 45.0%
AGTGTGCAGCCAAAAGTCAA+AGG + Chr4:56182051-56182070 None:intergenic 45.0%
CAACAGGACAATTGAAGGCA+AGG + Chr4:56184609-56184628 None:intergenic 45.0%
CACTGCATAAACATCGCCTT+TGG - Chr4:56184541-56184560 MsG0480021274.01.T01:intron 45.0%
CATCGCACTTTGTCCATACA+CGG + Chr4:56184150-56184169 None:intergenic 45.0%
GAAACTGGATTCACGGTTGA+GGG - Chr4:56185417-56185436 MsG0480021274.01.T01:intron 45.0%
GAACTACAGTCAGTCTCAGA+AGG - Chr4:56185385-56185404 MsG0480021274.01.T01:intron 45.0%
GACACTCAAAACACAGCGAA+TGG - Chr4:56185642-56185661 MsG0480021274.01.T01:intron 45.0%
GAGAGCTCCATTTCAAGGAT+AGG + Chr4:56182414-56182433 None:intergenic 45.0%
GCCTAAGTGAACCTTCTAGT+AGG + Chr4:56185307-56185326 None:intergenic 45.0%
GCCTACAACAGGACAATTGA+AGG + Chr4:56184614-56184633 None:intergenic 45.0%
GCCTTCAATTGTCCTGTTGT+AGG - Chr4:56184610-56184629 MsG0480021274.01.T01:intron 45.0%
GCTTCGAGCAAGGAAAGAAT+AGG - Chr4:56184124-56184143 MsG0480021274.01.T01:intron 45.0%
GGGAGAACACGTTGTTTACA+TGG + Chr4:56183952-56183971 None:intergenic 45.0%
GTCTGTTGTTCAAGGGTTTG+TGG - Chr4:56186553-56186572 MsG0480021274.01.T01:CDS 45.0%
TCGGTTAACGACCTACTAGA+AGG - Chr4:56185293-56185312 MsG0480021274.01.T01:intron 45.0%
TGAAACTGGATTCACGGTTG+AGG - Chr4:56185416-56185435 MsG0480021274.01.T01:intron 45.0%
TGAACAACAAGCCTTAGCAC+AGG - Chr4:56185256-56185275 MsG0480021274.01.T01:intron 45.0%
TGAGGAAAATGCTTCGAGCA+AGG - Chr4:56184114-56184133 MsG0480021274.01.T01:intron 45.0%
TGATACAAGAGAGTGAGGTG+CGG + Chr4:56185104-56185123 None:intergenic 45.0%
TGGCTGGAAGGTAATTGCTA+GGG + Chr4:56184020-56184039 None:intergenic 45.0%
TGTGAGATAGAACAAAGGGG+AGG + Chr4:56183990-56184009 None:intergenic 45.0%
TTACTTGGTTTCGATTGCGC+CGG + Chr4:56186359-56186378 None:intergenic 45.0%
TTGTGGAATCTTTGACCTCG+TGG - Chr4:56183901-56183920 MsG0480021274.01.T01:intron 45.0%
TTGTGTCTGATTCTTGGGGT+CGG + Chr4:56185708-56185727 None:intergenic 45.0%
! AGAAGCAAATTCGAAGGCGT+TGG - Chr4:56185472-56185491 MsG0480021274.01.T01:intron 45.0%
! AGGGTGTCTTTGTATGACTG+TGG - Chr4:56180691-56180710 MsG0480021274.01.T01:CDS 45.0%
! ATGGTGCCAACGGATAAATC+TGG + Chr4:56182368-56182387 None:intergenic 45.0%
! CGATGATGATGACGAAGAAG+TGG + Chr4:56185169-56185188 None:intergenic 45.0%
! CGGATAAATCTGGACCGTTT+TGG + Chr4:56182358-56182377 None:intergenic 45.0%
! CTGAAGTATCATAGGAGCAC+CGG + Chr4:56182973-56182992 None:intergenic 45.0%
! GACTGTAAGTGATGGAAGGA+AGG - Chr4:56181496-56181515 MsG0480021274.01.T01:intron 45.0%
! GAGTACCTTTTCTCGCTTGT+AGG + Chr4:56181030-56181049 None:intergenic 45.0%
! GCACATTTTCCTTTTAGGCG+AGG - Chr4:56182994-56183013 MsG0480021274.01.T01:intron 45.0%
! TATTGGTTACTGGTGGCCAA+AGG + Chr4:56184560-56184579 None:intergenic 45.0%
! TGAGTTGGAAGCTTGATGCA+TGG - Chr4:56184801-56184820 MsG0480021274.01.T01:intron 45.0%
!! ACTTAGGCTTTGTTTGGGAG+TGG - Chr4:56184306-56184325 MsG0480021274.01.T01:intron 45.0%
!! GCGAGGCTTTCGTTTTTGTT+TGG - Chr4:56183011-56183030 MsG0480021274.01.T01:intron 45.0%
!! GCTCCAGTTGTTTCTTGTGA+TGG - Chr4:56181546-56181565 MsG0480021274.01.T01:intron 45.0%
!! TGTAAAGGGAGCTTTGTTGG+AGG + Chr4:56184687-56184706 None:intergenic 45.0%
!! TTGTTTGGGAGTGGATTGGA+TGG - Chr4:56184315-56184334 MsG0480021274.01.T01:intron 45.0%
!!! CGTGTTCTCCCTTTTTTCCT+CGG - Chr4:56183961-56183980 MsG0480021274.01.T01:intron 45.0%
AACTCTCAAAGGATCGTGGC+TGG + Chr4:56184036-56184055 None:intergenic 50.0%
AACTCTTCGCTCCCAGTATG+TGG - Chr4:56184090-56184109 MsG0480021274.01.T01:intron 50.0%
AATCAGTCACCCTATGCTCG+TGG - Chr4:56185586-56185605 MsG0480021274.01.T01:intron 50.0%
ACACAGATATCAACCACGGC+AGG + Chr4:56181293-56181312 None:intergenic 50.0%
AGCATTGCCAGATCATGGTG+AGG - Chr4:56184826-56184845 MsG0480021274.01.T01:intron 50.0%
ATACCACCAGTATGTTCGCC+CGG + Chr4:56182575-56182594 None:intergenic 50.0%
ATGGGAGGGGAAGACTTTAG+AGG - Chr4:56184342-56184361 MsG0480021274.01.T01:intron 50.0%
CACAGATATCAACCACGGCA+GGG + Chr4:56181292-56181311 None:intergenic 50.0%
CGGCTGAGGTGAGAAAATCT+TGG - Chr4:56186136-56186155 MsG0480021274.01.T01:CDS 50.0%
CTGGAAGGTAATTGCTAGGG+GGG + Chr4:56184017-56184036 None:intergenic 50.0%
CTGTGAAGTGCAGCTGAAAC+AGG - Chr4:56181521-56181540 MsG0480021274.01.T01:intron 50.0%
CTGTTTCAGCTGCACTTCAC+AGG + Chr4:56181523-56181542 None:intergenic 50.0%
GAGATAGAACAAAGGGGAGG+AGG + Chr4:56183987-56184006 None:intergenic 50.0%
GATCAGAGGTCTGTCCATCT+TGG - Chr4:56184064-56184083 MsG0480021274.01.T01:intron 50.0%
GCTGGAAGGTAATTGCTAGG+GGG + Chr4:56184018-56184037 None:intergenic 50.0%
GGACAAAAAGTCGTCCCTGT+GGG + Chr4:56181460-56181479 None:intergenic 50.0%
GGCTGGAAGGTAATTGCTAG+GGG + Chr4:56184019-56184038 None:intergenic 50.0%
GGTAATCAACCAACCCTACC+GGG - Chr4:56182234-56182253 MsG0480021274.01.T01:intron 50.0%
GTGGCTGGAAGGTAATTGCT+AGG + Chr4:56184021-56184040 None:intergenic 50.0%
TCAGCTACCTCACCATGATC+TGG + Chr4:56184836-56184855 None:intergenic 50.0%
TGAAAGACTACTCGACCACG+AGG + Chr4:56183919-56183938 None:intergenic 50.0%
TGGGAGGGGAAGACTTTAGA+GGG - Chr4:56184343-56184362 MsG0480021274.01.T01:intron 50.0%
TTTCTTCAACCCGGTAGGGT+TGG + Chr4:56182246-56182265 None:intergenic 50.0%
! CTTTCGGGATTTTGTCCTGC+CGG - Chr4:56182553-56182572 MsG0480021274.01.T01:intron 50.0%
! TTTCGGGATTTTGTCCTGCC+GGG - Chr4:56182554-56182573 MsG0480021274.01.T01:intron 50.0%
!! AGTGGATTGGATGGAGGGAT+GGG - Chr4:56184324-56184343 MsG0480021274.01.T01:intron 50.0%
!! CAGCAGATGAAGGCTTGTTG+TGG + Chr4:56185773-56185792 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTGGAT+TGG - Chr4:56184311-56184330 MsG0480021274.01.T01:intron 50.0%
!! TGGAGAGCATTGCCAGATCA+TGG - Chr4:56184821-56184840 MsG0480021274.01.T01:intron 50.0%
!! TTGGGAGTGGATTGGATGGA+GGG - Chr4:56184319-56184338 MsG0480021274.01.T01:intron 50.0%
!! TTTGGGAGTGGATTGGATGG+AGG - Chr4:56184318-56184337 MsG0480021274.01.T01:intron 50.0%
!!! GGGTAGTGGGTACTTTTGAC+CGG - Chr4:56182951-56182970 MsG0480021274.01.T01:intron 50.0%
ACAAGAGAGTGAGGTGCGGA+GGG + Chr4:56185100-56185119 None:intergenic 55.0%
AGATATCAACCACGGCAGGG+TGG + Chr4:56181289-56181308 None:intergenic 55.0%
AGGAGGCGAAATGGAGGTGA+CGG - Chr4:56186116-56186135 MsG0480021274.01.T01:CDS 55.0%
AGGGTAAGCTGTTGCTGCGA+AGG + Chr4:56185081-56185100 None:intergenic 55.0%
ATTGGATGGAGGGATGGGAG+GGG - Chr4:56184329-56184348 MsG0480021274.01.T01:intron 55.0%
CGGCAGGACAAAATCCCGAA+AGG + Chr4:56182555-56182574 None:intergenic 55.0%
CTCAAAGGATCGTGGCTGGA+AGG + Chr4:56184032-56184051 None:intergenic 55.0%
GAGAATATTCCACCCTGCCG+TGG - Chr4:56181277-56181296 MsG0480021274.01.T01:intron 55.0%
GATTGGATGGAGGGATGGGA+GGG - Chr4:56184328-56184347 MsG0480021274.01.T01:intron 55.0%
GGAGGAGGCCGAGGAAAAAA+GGG + Chr4:56183972-56183991 None:intergenic 55.0%
GGGACAAAAAGTCGTCCCTG+TGG + Chr4:56181461-56181480 None:intergenic 55.0%
TACAAGAGAGTGAGGTGCGG+AGG + Chr4:56185101-56185120 None:intergenic 55.0%
TCGCTCCCAGTATGTGGATG+AGG - Chr4:56184096-56184115 MsG0480021274.01.T01:intron 55.0%
! GGGAGGGGAAGACTTTAGAG+GGG - Chr4:56184344-56184363 MsG0480021274.01.T01:intron 55.0%
! TTGGTTGGCTCACAAGCACG+AGG - Chr4:56184182-56184201 MsG0480021274.01.T01:intron 55.0%
!! GAGTGGATTGGATGGAGGGA+TGG - Chr4:56184323-56184342 MsG0480021274.01.T01:intron 55.0%
CTCTTCACTGGGTTGCGTCG+AGG - Chr4:56180532-56180551 MsG0480021274.01.T01:CDS 60.0%
GGATTGGATGGAGGGATGGG+AGG - Chr4:56184327-56184346 MsG0480021274.01.T01:intron 60.0%
GGGAGGAGGCCGAGGAAAAA+AGG + Chr4:56183973-56183992 None:intergenic 60.0%
! CGAAATGGAGGTGACGGCTG+AGG - Chr4:56186122-56186141 MsG0480021274.01.T01:CDS 60.0%
CACCAGTATGTTCGCCCGGC+AGG + Chr4:56182571-56182590 None:intergenic 65.0%
CTGCCGGGCGAACATACTGG+TGG - Chr4:56182569-56182588 MsG0480021274.01.T01:intron 65.0%
GAACAAAGGGGAGGAGGCCG+AGG + Chr4:56183981-56184000 None:intergenic 65.0%
GTCCTGCCGGGCGAACATAC+TGG - Chr4:56182566-56182585 MsG0480021274.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56180504 56186646 56180504 ID=MsG0480021274.01;Name=MsG0480021274.01
Chr4 mRNA 56180504 56186646 56180504 ID=MsG0480021274.01.T01;Parent=MsG0480021274.01;Name=MsG0480021274.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.33|0|1|1|1|4|0|290
Chr4 exon 56186493 56186646 56186493 ID=MsG0480021274.01.T01:exon:6869;Parent=MsG0480021274.01.T01
Chr4 exon 56186107 56186308 56186107 ID=MsG0480021274.01.T01:exon:6868;Parent=MsG0480021274.01.T01
Chr4 exon 56185651 56185686 56185651 ID=MsG0480021274.01.T01:exon:6867;Parent=MsG0480021274.01.T01
Chr4 exon 56180504 56180984 56180504 ID=MsG0480021274.01.T01:exon:6866;Parent=MsG0480021274.01.T01
Chr4 CDS 56186493 56186646 56186493 ID=MsG0480021274.01.T01:cds;Parent=MsG0480021274.01.T01
Chr4 CDS 56186107 56186308 56186107 ID=MsG0480021274.01.T01:cds;Parent=MsG0480021274.01.T01
Chr4 CDS 56185651 56185686 56185651 ID=MsG0480021274.01.T01:cds;Parent=MsG0480021274.01.T01
Chr4 CDS 56180504 56180984 56180504 ID=MsG0480021274.01.T01:cds;Parent=MsG0480021274.01.T01
Gene Sequence

>MsG0480021274.01.T01

ATGGGTGTTTTTGTTGAGAATTCTAGTTCTCTTCACTGGGTTGCGTCGAGGAAAATTCAACCATTTCAATCTGATTTAATTCTCGCGTTTAACCTTTCACTTGAGACTTTCAATGAGGTTCCTCTTTCTGATGAAATAGGGGAACAAGTTAATAGTTATTCCACTGATGGAAAAAAGGTTTTGTTGAGGGTAGATGTTGTGAATCTGTTTTGGTATGATTTGGAGAGTAAACAAGTTAGTCTTTTTCAAGAAGATCTTGATTTGAATGACGCCATGATTTGTGTTGGAAGTCTTGTACCACCTTACTTCCCTGTTGATAATCGTAGTAAGAAGGAGAATCCTACAAGCGAGAAAAGGGACGACTTTTTGTCCCGAGAATTTAAATTGAGACTGAAGGTAGTAAATAAAGCAATCCTCAAAGCTTTCGAGAATTTGAAGGCAAATGTGAAGAAAGGCAAAGGGAAACTATTATCTCCTAGCAACAATAAGGATCATGAAAAAGTGACTTTGGTTAGTTTGTTAAGAGATGTGGAAGTGATTACTCTTTCAATGTTGGAGTCACTTTTAATCTTTATATCTGGACCGGCGCAATCGAAACCAAGTAATTATTGGTCCTTGGTTTCAAAGCTTATGATGCAGAACAAGAAGGTTTCTTCTACACATGAAGCTGATATCAACGAGTTTTCTAATGTTGATGCTGCATTGCAATCTTTTGTGTTTAATGTCGCAAGAAAATCAGATAATGTCAACCATTTGCAGAACCAATTGGAAAATTTGGAGTCTGTTGTTCAAGGGTTTGTGGAAGCACTTGAAGCTCTTTTTAAACGCTTTATTAAGATTAGAGTTTCCCTTCTCAATGTCCTTGATCACTAG

Protein sequence

>MsG0480021274.01.T01

MGVFVENSSSLHWVASRKIQPFQSDLILAFNLSLETFNEVPLSDEIGEQVNSYSTDGKKVLLRVDVVNLFWYDLESKQVSLFQEDLDLNDAMICVGSLVPPYFPVDNRSKKENPTSEKRDDFLSREFKLRLKVVNKAILKAFENLKANVKKGKGKLLSPSNNKDHEKVTLVSLLRDVEVITLSMLESLLIFISGPAQSKPSNYWSLVSKLMMQNKKVSSTHEADINEFSNVDAALQSFVFNVARKSDNVNHLQNQLENLESVVQGFVEALEALFKRFIKIRVSLLNVLDH*