AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018206.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018206.01.T01 MTR_4g007420 91.197 284 23 1 1 282 1 284 0.0 536
MsG0480018206.01.T01 MTR_4g127640 73.196 291 69 3 1 282 1 291 8.32e-151 423
MsG0480018206.01.T01 MTR_4g127640 70.103 291 69 4 1 282 1 282 4.66e-141 398
MsG0480018206.01.T01 MTR_4g127640 70.886 237 60 3 55 282 64 300 7.76e-115 332
MsG0480018206.01.T01 MTR_4g007390 86.441 59 8 0 1 59 1 59 8.09e-31 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018206.01.T01 AT5G57280 65.052 289 94 2 1 282 1 289 3.53e-138 391

Find 85 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACATTTCTTGCGTTTC+TGG 0.086423 4:+1555548 MsG0480018206.01.T01:three_prime_UTR
AATTTAATTGTTACATTTCA+TGG 0.202021 4:+1555632 MsG0480018206.01.T01:three_prime_UTR
TTCCCGTAACATTGAAATTC+AGG 0.224195 4:+1550893 MsG0480018206.01.T01:CDS
GTTTGTATACTAATATTCTA+TGG 0.282409 4:+1555694 MsG0480018206.01.T01:three_prime_UTR
CATCGGTATATCTGCTATTC+AGG 0.294258 4:+1551925 MsG0480018206.01.T01:CDS
ATTTGTCAAGCATTTGTATA+AGG 0.304310 4:-1552393 None:intergenic
TATCTTTGGTTTCAGGGCTT+AGG 0.313482 4:+1551875 MsG0480018206.01.T01:intron
GCAAGAAATGTTCAACATTA+AGG 0.324321 4:-1555540 None:intergenic
CGACCAGTGTACTTGGTATC+TGG 0.329329 4:-1555479 None:intergenic
ATCTTTGGTTTCAGGGCTTA+GGG 0.330641 4:+1551876 MsG0480018206.01.T01:intron
TTCAATGTTACGGGAATTAG+AGG 0.341768 4:-1550886 None:intergenic
CCGTTTCCGACCAGTGTACT+TGG 0.346432 4:-1555486 None:intergenic
GACCCATGTCACCGAGTAAA+AGG 0.358459 4:-1551514 None:intergenic
GGATATAGTGGTGGATTATC+AGG 0.368953 4:+1552505 MsG0480018206.01.T01:CDS
AAACCTGAATTTCAATGTTA+CGG 0.373267 4:-1550896 None:intergenic
TATACAAATGCTTGACAAAT+GGG 0.377007 4:+1552396 MsG0480018206.01.T01:CDS
CAGGGCTTAGGGCTTCGTTT+TGG 0.380504 4:+1551887 MsG0480018206.01.T01:intron
AACCTGAATTTCAATGTTAC+GGG 0.383633 4:-1550895 None:intergenic
CGCATTGGAGCGTGAGGTTG+AGG 0.393884 4:+1551487 MsG0480018206.01.T01:CDS
TTGTGAATTGGGACCGGGAT+GGG 0.406273 4:+1550798 MsG0480018206.01.T01:exon
TTCAATGACTGAGCGAGCTC+TGG 0.406367 4:+1551024 MsG0480018206.01.T01:CDS
TTATACAAATGCTTGACAAA+TGG 0.413050 4:+1552395 MsG0480018206.01.T01:CDS
TAACTTAGGAACACCGTCAT+TGG 0.426115 4:-1551062 None:intergenic
TTATATTTCTGTTTCTTCCA+AGG 0.434075 4:-1555383 None:intergenic
AGGGAAGGGAATGGATAAAG+AGG 0.451166 4:+1555417 MsG0480018206.01.T01:CDS
TCAGGTGGAGCTACCGTCTC+TGG 0.452727 4:-1550828 None:intergenic
AGCAGTATTTCAAGTGTATC+CGG 0.452737 4:+1552424 MsG0480018206.01.T01:CDS
TCCGGAAAACAATGATCAAC+GGG 0.454699 4:+1552442 MsG0480018206.01.T01:CDS
GAAATATAATAAGAACGAAA+AGG 0.457776 4:+1555397 MsG0480018206.01.T01:CDS
TTTAAGTTATTTAATTGTAT+CGG 0.459049 4:+1555740 MsG0480018206.01.T01:three_prime_UTR
TGGATTTAGTGGGGATATAG+TGG 0.463727 4:+1552493 MsG0480018206.01.T01:CDS
CTCTGGTCTTGAACCCATCC+CGG 0.469160 4:-1550811 None:intergenic
CACAGAGAGTGGACACCATT+GGG 0.477696 4:+1551332 MsG0480018206.01.T01:CDS
CTTGCAACAGATTTGACTGA+TGG 0.483017 4:-1555597 None:intergenic
TTTACTCGGTGACATGGGTC+AGG 0.486959 4:+1551517 MsG0480018206.01.T01:CDS
AAGGAGCAGATGAGAAGAAG+AGG 0.488596 4:+1555443 MsG0480018206.01.T01:CDS
TCATCATCGTAAAATATCTC+AGG 0.500883 4:-1550846 None:intergenic
TTTGTGAATTGGGACCGGGA+TGG 0.505906 4:+1550797 MsG0480018206.01.T01:exon
GACATTGCACCCTCAATGCT+TGG 0.507243 4:+1551363 MsG0480018206.01.T01:CDS
AAATATAATAAGAACGAAAA+GGG 0.511948 4:+1555398 MsG0480018206.01.T01:CDS
GCAATGAAAGCTGGATTTAG+TGG 0.512113 4:+1552482 MsG0480018206.01.T01:CDS
AACTTAGGAACACCGTCATT+GGG 0.512998 4:-1551061 None:intergenic
TCGAGTGCTGCAATGAAAGC+TGG 0.520754 4:+1552473 MsG0480018206.01.T01:CDS
CCAAGTACACTGGTCGGAAA+CGG 0.520993 4:+1555486 MsG0480018206.01.T01:CDS
CCAATGTCAAGGAGTAACTT+AGG 0.523073 4:-1551076 None:intergenic
CCACAGAGAGTGGACACCAT+TGG 0.527074 4:+1551331 MsG0480018206.01.T01:CDS
CAATGAAAGCTGGATTTAGT+GGG 0.527214 4:+1552483 MsG0480018206.01.T01:CDS
GCATTGGAGCGTGAGGTTGA+GGG 0.531379 4:+1551488 MsG0480018206.01.T01:CDS
AGAACGAAAAGGGAAGGGAA+TGG 0.533720 4:+1555408 MsG0480018206.01.T01:CDS
ACTAGCATACCAAGCATTGA+GGG 0.538511 4:-1551372 None:intergenic
TTAACTTGTAGATATCGCAT+TGG 0.541703 4:+1551472 MsG0480018206.01.T01:intron
GGAATGTTTGATGGGGCCAT+CGG 0.547297 4:+1551908 MsG0480018206.01.T01:CDS
ATAATAAGAACGAAAAGGGA+AGG 0.547716 4:+1555402 MsG0480018206.01.T01:CDS
TACTAGCATACCAAGCATTG+AGG 0.548542 4:-1551373 None:intergenic
CCTAAGTTACTCCTTGACAT+TGG 0.548757 4:+1551076 MsG0480018206.01.T01:CDS
GCATACTTCAATCTTAGATG+AGG 0.569225 4:-1552248 None:intergenic
CATACTTCAATCTTAGATGA+GGG 0.573227 4:-1552247 None:intergenic
ATTTAGTGGGGATATAGTGG+TGG 0.581010 4:+1552496 MsG0480018206.01.T01:CDS
GGTTGTGGATCAGGACTTAG+CGG 0.588086 4:+1551300 MsG0480018206.01.T01:intron
TAGTGGTGGATTATCAGGAC+AGG 0.592397 4:+1552510 MsG0480018206.01.T01:CDS
ACTGAAGACGACGACGACAG+TGG 0.593262 4:+1554900 MsG0480018206.01.T01:CDS
GACAGAATACATCTAGCTTG+TGG 0.593682 4:+1555716 MsG0480018206.01.T01:three_prime_UTR
GAAATAACATACCAATGTCA+AGG 0.594135 4:-1551087 None:intergenic
ATCCGGAAAACAATGATCAA+CGG 0.595592 4:+1552441 MsG0480018206.01.T01:CDS
TAATAAGAACGAAAAGGGAA+GGG 0.599558 4:+1555403 MsG0480018206.01.T01:CDS
CTTCTCAATTTACCCAATGA+CGG 0.600645 4:+1551049 MsG0480018206.01.T01:CDS
TCATCGTAAAATATCTCAGG+TGG 0.606996 4:-1550843 None:intergenic
GGAATGGATAAAGAGGAAGA+AGG 0.613907 4:+1555424 MsG0480018206.01.T01:CDS
CAGATACCAAGTACACTGGT+CGG 0.615749 4:+1555480 MsG0480018206.01.T01:CDS
GATGGGTTCAAGACCAGAGA+CGG 0.621894 4:+1550815 MsG0480018206.01.T01:exon
GAGAGTGGACACCATTGGGT+TGG 0.626926 4:+1551336 MsG0480018206.01.T01:CDS
CAATGTCGAGACCAACCCAA+TGG 0.632121 4:-1551347 None:intergenic
ATACAAATGCTTGACAAATG+GGG 0.632370 4:+1552397 MsG0480018206.01.T01:CDS
CCAATGGTGTCCACTCTCTG+TGG 0.639731 4:-1551331 None:intergenic
GCACGAGATGCAATTCTCAA+CGG 0.647396 4:-1555571 None:intergenic
AGATATCGCATTGGAGCGTG+AGG 0.647913 4:+1551481 MsG0480018206.01.T01:intron
TCTTAGATGAGGGTTGTGAG+AGG 0.653129 4:-1552237 None:intergenic
CCTCCAGATACCAAGTACAC+TGG 0.661149 4:+1555476 MsG0480018206.01.T01:CDS
CCAGTGTACTTGGTATCTGG+AGG 0.664844 4:-1555476 None:intergenic
GTTAGGTAATGGTCACGTAG+CGG 0.666806 4:+1555664 MsG0480018206.01.T01:three_prime_UTR
GGTGACGTAACCACAGAGAG+TGG 0.676514 4:+1551321 MsG0480018206.01.T01:CDS
CTGAATAGCAGATATACCGA+TGG 0.682606 4:-1551924 None:intergenic
GGTCCCAATTCACAAAACCC+TGG 0.692583 4:-1550790 None:intergenic
AATGAAAGCTGGATTTAGTG+GGG 0.706783 4:+1552484 MsG0480018206.01.T01:CDS
ATACGCGGGATACTGTACCA+GGG 0.769987 4:+1550773 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATAATATTACTATT+TGG + Chr4:1552635-1552654 MsG0480018206.01.T01:intron 10.0%
!! AAAGAATAATATTACTATTT+GGG + Chr4:1552636-1552655 MsG0480018206.01.T01:intron 10.0%
!! AATAAAAGAATATTACAATT+TGG + Chr4:1553148-1553167 MsG0480018206.01.T01:intron 10.0%
!! ATAAAAGAATATTACAATTT+GGG + Chr4:1553149-1553168 MsG0480018206.01.T01:intron 10.0%
!! GATAAATATTAATAAAATAG+TGG + Chr4:1554700-1554719 MsG0480018206.01.T01:intron 10.0%
!!! AAAAAAAAGTATAATAGATA+AGG - Chr4:1552280-1552299 None:intergenic 10.0%
!!! ATATAATTTTTTATGATTTG+TGG + Chr4:1551261-1551280 MsG0480018206.01.T01:intron 10.0%
!!! TAACATATTATTTTTATCAA+GGG - Chr4:1551667-1551686 None:intergenic 10.0%
!!! TTTAAGTTATTTAATTGTAT+CGG + Chr4:1555740-1555759 MsG0480018206.01.T01:three_prime_UTR 10.0%
!! AAAAAAAAAAAAACAGTGAT+AGG - Chr4:1552717-1552736 None:intergenic 15.0%
!! AAATATAATAAGAACGAAAA+GGG + Chr4:1555398-1555417 MsG0480018206.01.T01:CDS 15.0%
!! AAATATAGTAGTTTAAATGA+AGG + Chr4:1551748-1551767 MsG0480018206.01.T01:intron 15.0%
!! AAATGAAGGATAAATATAAT+TGG + Chr4:1551762-1551781 MsG0480018206.01.T01:intron 15.0%
!! AATTTAATTGTTACATTTCA+TGG + Chr4:1555632-1555651 MsG0480018206.01.T01:three_prime_UTR 15.0%
!! AGTTAAAAGATAAAGATTAT+TGG - Chr4:1553120-1553139 None:intergenic 15.0%
!! CAAATTTAGAAATGTAATAA+TGG + Chr4:1553446-1553465 MsG0480018206.01.T01:intron 15.0%
!! CTATAACCTAAATATATAAA+GGG - Chr4:1551815-1551834 None:intergenic 15.0%
!! TATAACCTAAATATATAAAG+GGG - Chr4:1551814-1551833 None:intergenic 15.0%
!! TCTATAACCTAAATATATAA+AGG - Chr4:1551816-1551835 None:intergenic 15.0%
!!! ATGTAGAATTAATACTTTTT+TGG + Chr4:1553352-1553371 MsG0480018206.01.T01:intron 15.0%
!!! ATTTTGTGAAATTCTTTTAT+TGG + Chr4:1553726-1553745 MsG0480018206.01.T01:intron 15.0%
!!! GTAACATATTATTTTTATCA+AGG - Chr4:1551668-1551687 None:intergenic 15.0%
!!! TCATTTTGAAACAATTTTTT+TGG + Chr4:1553612-1553631 MsG0480018206.01.T01:intron 15.0%
!! AAACTACAAAAATTAATGCA+TGG + Chr4:1551973-1551992 MsG0480018206.01.T01:intron 20.0%
!! AACACAAAACTTTATAAAAG+GGG - Chr4:1554371-1554390 None:intergenic 20.0%
!! AATATCCCCTTTATATATTT+AGG + Chr4:1551806-1551825 MsG0480018206.01.T01:intron 20.0%
!! ACAACACAAAACTTTATAAA+AGG - Chr4:1554373-1554392 None:intergenic 20.0%
!! ACTAATGTTTATCAATAACA+TGG - Chr4:1551619-1551638 None:intergenic 20.0%
!! AGTATATAGTATTAGAAAAC+AGG + Chr4:1553665-1553684 MsG0480018206.01.T01:intron 20.0%
!! AGTTAAGAGATAACAATAAT+TGG - Chr4:1552866-1552885 None:intergenic 20.0%
!! ATGTAAAAACTTTAGCAATA+TGG - Chr4:1553035-1553054 None:intergenic 20.0%
!! CAACACAAAACTTTATAAAA+GGG - Chr4:1554372-1554391 None:intergenic 20.0%
!! CAAGTCAAAAAAAAAAAATC+AGG - Chr4:1552186-1552205 None:intergenic 20.0%
!! GAAATATAATAAGAACGAAA+AGG + Chr4:1555397-1555416 MsG0480018206.01.T01:CDS 20.0%
!! GTATATAGTATTAGAAAACA+GGG + Chr4:1553666-1553685 MsG0480018206.01.T01:intron 20.0%
!! GTTTGTATACTAATATTCTA+TGG + Chr4:1555694-1555713 MsG0480018206.01.T01:three_prime_UTR 20.0%
!! TAAAAGATAAAGATTATTGG+AGG - Chr4:1553117-1553136 None:intergenic 20.0%
!! TAAAGATAGTTGTAAAGAAT+AGG - Chr4:1554295-1554314 None:intergenic 20.0%
!! TACACCAATAGTAAAAAAAA+AGG - Chr4:1553504-1553523 None:intergenic 20.0%
!! TGTAAAAACTTTAGCAATAT+GGG - Chr4:1553034-1553053 None:intergenic 20.0%
!! TTAATTGAGTTTCATTTCAT+CGG - Chr4:1552030-1552049 None:intergenic 20.0%
!!! AAAGAATACTTTTACGATTT+GGG + Chr4:1552897-1552916 MsG0480018206.01.T01:intron 20.0%
!!! AATATTACAATTTGGGTTTA+GGG + Chr4:1553156-1553175 MsG0480018206.01.T01:intron 20.0%
!!! ACAACTATCTTTAATTTAAG+TGG + Chr4:1554302-1554321 MsG0480018206.01.T01:intron 20.0%
!!! AGAACTCTAAAAAAAATCAT+CGG + Chr4:1555778-1555797 MsG0480018206.01.T01:three_prime_UTR 20.0%
!!! AGAATTAATACTTTTTTGGA+TGG + Chr4:1553356-1553375 MsG0480018206.01.T01:intron 20.0%
!!! ATATTATTTTTATCAAGGGA+TGG - Chr4:1551663-1551682 None:intergenic 20.0%
!!! CTAACCTTTTTTTTTACTAT+TGG + Chr4:1553497-1553516 MsG0480018206.01.T01:intron 20.0%
!!! TTAAAAGGTGTTACTTTTTT+TGG - Chr4:1554342-1554361 None:intergenic 20.0%
!!! TTGTTATTATGCTCTAATAA+AGG + Chr4:1551577-1551596 MsG0480018206.01.T01:intron 20.0%
! AAAAAAAAAACAGTGATAGG+CGG - Chr4:1552714-1552733 None:intergenic 25.0%
! AAAAAAGTTATAAAGAAGCG+AGG - Chr4:1552345-1552364 None:intergenic 25.0%
! AAACCTGAATTTCAATGTTA+CGG - Chr4:1550899-1550918 None:intergenic 25.0%
! AAAGCTAGTAGCAAATAAAT+AGG - Chr4:1554232-1554251 None:intergenic 25.0%
! AATATTACTATTTGGGCTTA+GGG + Chr4:1552643-1552662 MsG0480018206.01.T01:intron 25.0%
! ATAATATATGTTGACAGTCT+CGG - Chr4:1554738-1554757 None:intergenic 25.0%
! ATGCACATGTATTAAAATCA+TGG + Chr4:1555195-1555214 MsG0480018206.01.T01:intron 25.0%
! ATTTGTCAAGCATTTGTATA+AGG - Chr4:1552396-1552415 None:intergenic 25.0%
! CTTTCTTACTACTTTATCTT+TGG + Chr4:1551861-1551880 MsG0480018206.01.T01:intron 25.0%
! GTATTTGATCAAGTAAACAA+TGG + Chr4:1551716-1551735 MsG0480018206.01.T01:intron 25.0%
! GTTTATCAATAACATGGAAA+AGG - Chr4:1551613-1551632 None:intergenic 25.0%
! TAAAAGGGGAAACAATTAAA+AGG - Chr4:1554357-1554376 None:intergenic 25.0%
! TAAGAGATAACAATAATTGG+AGG - Chr4:1552863-1552882 None:intergenic 25.0%
! TAATATTACTATTTGGGCTT+AGG + Chr4:1552642-1552661 MsG0480018206.01.T01:intron 25.0%
! TATACAAATGCTTGACAAAT+GGG + Chr4:1552396-1552415 MsG0480018206.01.T01:CDS 25.0%
! TCCATATGCTTTATATACAT+AGG - Chr4:1552306-1552325 None:intergenic 25.0%
! TCCTATGTATATAAAGCATA+TGG + Chr4:1552302-1552321 MsG0480018206.01.T01:intron 25.0%
! TGAGTATATTCTTCTTAACA+CGG - Chr4:1552002-1552021 None:intergenic 25.0%
! TGTAAATACTGTAGCAATAT+GGG - Chr4:1552780-1552799 None:intergenic 25.0%
! TGTACACTCAATTAATTAGA+GGG + Chr4:1553539-1553558 MsG0480018206.01.T01:intron 25.0%
! TGTGTATTTGATTCATATTC+AGG + Chr4:1554959-1554978 MsG0480018206.01.T01:intron 25.0%
! TTATACAAATGCTTGACAAA+TGG + Chr4:1552395-1552414 MsG0480018206.01.T01:CDS 25.0%
! TTATAGCAAAAAACAGTGAT+AGG - Chr4:1553230-1553249 None:intergenic 25.0%
! TTCATCATAAAGTATGACTT+TGG + Chr4:1555020-1555039 MsG0480018206.01.T01:intron 25.0%
!! AACTCTAAAAAAAATCATCG+GGG + Chr4:1555780-1555799 MsG0480018206.01.T01:three_prime_UTR 25.0%
!! AATTTTTGTGAAAACTGATG+AGG + Chr4:1552744-1552763 MsG0480018206.01.T01:intron 25.0%
!! ATAAAGGGGATATTAAGTTT+TGG - Chr4:1551800-1551819 None:intergenic 25.0%
!! ATAATAACAAAGCATTTGGT+TGG - Chr4:1551567-1551586 None:intergenic 25.0%
!! ATATTACAATTTGGGTTTAG+GGG + Chr4:1553157-1553176 MsG0480018206.01.T01:intron 25.0%
!! ATTTTTGTGAAAACTGATGA+GGG + Chr4:1552745-1552764 MsG0480018206.01.T01:intron 25.0%
!! GAAAGAATACTTTTACGATT+TGG + Chr4:1552896-1552915 MsG0480018206.01.T01:intron 25.0%
!! GAACTCTAAAAAAAATCATC+GGG + Chr4:1555779-1555798 MsG0480018206.01.T01:three_prime_UTR 25.0%
!! GAATATTACAATTTGGGTTT+AGG + Chr4:1553155-1553174 MsG0480018206.01.T01:intron 25.0%
!! TAGAAGCATAAATAAATACC+AGG - Chr4:1555056-1555075 None:intergenic 25.0%
!! TTATATTTCTGTTTCTTCCA+AGG - Chr4:1555386-1555405 None:intergenic 25.0%
!!! AAAGAGTGCTTATAAACATT+GGG - Chr4:1553202-1553221 None:intergenic 25.0%
!!! ACTTTTTTTTGTTCCTTTGT+AGG + Chr4:1552357-1552376 MsG0480018206.01.T01:intron 25.0%
!!! CTTTTTTTTGTTCCTTTGTA+GGG + Chr4:1552358-1552377 MsG0480018206.01.T01:intron 25.0%
!!! TTTTTCTTTTTCACTAACTG+TGG + Chr4:1554788-1554807 MsG0480018206.01.T01:intron 25.0%
AACCTGAATTTCAATGTTAC+GGG - Chr4:1550898-1550917 None:intergenic 30.0%
ATAATAAGAACGAAAAGGGA+AGG + Chr4:1555402-1555421 MsG0480018206.01.T01:CDS 30.0%
ATACAAATGCTTGACAAATG+GGG + Chr4:1552397-1552416 MsG0480018206.01.T01:CDS 30.0%
ATGAATCAAATACACAGATG+TGG - Chr4:1554955-1554974 None:intergenic 30.0%
ATGTAAAAAAAGCCCTACAA+AGG - Chr4:1552373-1552392 None:intergenic 30.0%
ATTACTCTTGATGAAACGAA+TGG - Chr4:1552556-1552575 None:intergenic 30.0%
CATACTTCAATCTTAGATGA+GGG - Chr4:1552250-1552269 None:intergenic 30.0%
CTTGCGAAAAATGTTAAAAG+AGG - Chr4:1555295-1555314 None:intergenic 30.0%
GAAATAACATACCAATGTCA+AGG - Chr4:1551090-1551109 None:intergenic 30.0%
GCAAGAAATGTTCAACATTA+AGG - Chr4:1555543-1555562 None:intergenic 30.0%
GCTATAACCAATTTATGAAC+AGG - Chr4:1555094-1555113 None:intergenic 30.0%
GTACATGATATATGTGTTGA+TGG + Chr4:1553285-1553304 MsG0480018206.01.T01:intron 30.0%
GTGTAAATACTGTAGCAATA+TGG - Chr4:1552781-1552800 None:intergenic 30.0%
GTGTACACTCAATTAATTAG+AGG + Chr4:1553538-1553557 MsG0480018206.01.T01:intron 30.0%
TAAGATCTCTCTATCATTGA+TGG + Chr4:1555151-1555170 MsG0480018206.01.T01:intron 30.0%
TAATAAGAACGAAAAGGGAA+GGG + Chr4:1555403-1555422 MsG0480018206.01.T01:CDS 30.0%
TATATTATTCCCCAGCATAA+GGG - Chr4:1555268-1555287 None:intergenic 30.0%
TCAGAAATCGAATCAGAAAT+CGG - Chr4:1550983-1551002 None:intergenic 30.0%
TCATCATCGTAAAATATCTC+AGG - Chr4:1550849-1550868 None:intergenic 30.0%
TGAACAAACAAAAATACTGC+AGG + Chr4:1555337-1555356 MsG0480018206.01.T01:intron 30.0%
TGAATCAAATACACAGATGT+GGG - Chr4:1554954-1554973 None:intergenic 30.0%
TTACTATTGGTGTAATGCTT+TGG + Chr4:1553510-1553529 MsG0480018206.01.T01:intron 30.0%
TTGAGCAAAAAAACAGTGAT+AGG - Chr4:1552978-1552997 None:intergenic 30.0%
TTTCCTAAACAAGGGATAAT+GGG + Chr4:1554251-1554270 MsG0480018206.01.T01:intron 30.0%
! AATTAATTAGAGGGTGCAAT+TGG + Chr4:1553548-1553567 MsG0480018206.01.T01:intron 30.0%
! ACTACTTTATCTTTGGTTTC+AGG + Chr4:1551868-1551887 MsG0480018206.01.T01:intron 30.0%
! AGATACTCTTTTCTCTTCTT+AGG - Chr4:1554837-1554856 None:intergenic 30.0%
! CTACTTTATCTTTGGTTTCA+GGG + Chr4:1551869-1551888 MsG0480018206.01.T01:intron 30.0%
! CTTGACAAACAAAAGTTTTG+TGG + Chr4:1554505-1554524 MsG0480018206.01.T01:intron 30.0%
! GAGCATAATAACAAAGCATT+TGG - Chr4:1551571-1551590 None:intergenic 30.0%
! TAAACGACACTCATTTTGAA+AGG - Chr4:1553413-1553432 None:intergenic 30.0%
! TACGCTGTTAGTATTGAAAA+TGG - Chr4:1553063-1553082 None:intergenic 30.0%
! TATTACAATTTGGGTTTAGG+GGG + Chr4:1553158-1553177 MsG0480018206.01.T01:intron 30.0%
! TTTTAGACAGAAATAGACCT+TGG + Chr4:1555366-1555385 MsG0480018206.01.T01:CDS 30.0%
! TTTTCCTAAACAAGGGATAA+TGG + Chr4:1554250-1554269 MsG0480018206.01.T01:intron 30.0%
!! AAACGACACTCATTTTGAAA+GGG - Chr4:1553412-1553431 None:intergenic 30.0%
!! CAAAGAGTGCTTATAAACAT+TGG - Chr4:1553203-1553222 None:intergenic 30.0%
!! TTAACTTGTAGATATCGCAT+TGG + Chr4:1551472-1551491 MsG0480018206.01.T01:intron 30.0%
!! TTAGTTGATTTTATCGACAC+CGG + Chr4:1551122-1551141 MsG0480018206.01.T01:intron 30.0%
!! TTCAAAATGAGTGTCGTTTA+AGG + Chr4:1553413-1553432 MsG0480018206.01.T01:intron 30.0%
!!! ACTAGCTTTTTCCTAAACAA+GGG + Chr4:1554243-1554262 MsG0480018206.01.T01:intron 30.0%
!!! ACTGTTTTTTGCTATAAGAG+GGG + Chr4:1553233-1553252 MsG0480018206.01.T01:intron 30.0%
!!! CACTGTTTTTTGCTATAAGA+GGG + Chr4:1553232-1553251 MsG0480018206.01.T01:intron 30.0%
!!! TACTAGCTTTTTCCTAAACA+AGG + Chr4:1554242-1554261 MsG0480018206.01.T01:intron 30.0%
!!! TCACTGTTTTTTGCTATAAG+AGG + Chr4:1553231-1553250 MsG0480018206.01.T01:intron 30.0%
!!! TGTGGATGTTTGTTTTGTTT+AGG + Chr4:1551279-1551298 MsG0480018206.01.T01:intron 30.0%
!!! TGTTTGTTTTGTTTAGGTTG+TGG + Chr4:1551285-1551304 MsG0480018206.01.T01:intron 30.0%
!!! TTCGTTTTGGAATGTTTGAT+GGG + Chr4:1551900-1551919 MsG0480018206.01.T01:CDS 30.0%
!!! TTTCATGGCTTTTTTGTGTT+AGG + Chr4:1555647-1555666 MsG0480018206.01.T01:three_prime_UTR 30.0%
!!! TTTTTGACTTGATAATGCAG+TGG + Chr4:1552195-1552214 MsG0480018206.01.T01:intron 30.0%
AATCAAATACACAGATGTGG+GGG - Chr4:1554952-1554971 None:intergenic 35.0%
AATGAAAGCTGGATTTAGTG+GGG + Chr4:1552484-1552503 MsG0480018206.01.T01:CDS 35.0%
ACACGTAAACCAAGAAAACT+TGG - Chr4:1552151-1552170 None:intergenic 35.0%
ACTCCTTGCATTTGCAAATA+AGG - Chr4:1552838-1552857 None:intergenic 35.0%
ACTTATCCCAGATCAAAATG+GGG - Chr4:1552116-1552135 None:intergenic 35.0%
ACTTTAAGTGTGGAGAATCT+GGG - Chr4:1554462-1554481 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGAAG+AGG - Chr4:1550924-1550943 None:intergenic 35.0%
AGATTCACACACTTTAAGTG+TGG - Chr4:1554472-1554491 None:intergenic 35.0%
ATCCGGAAAACAATGATCAA+CGG + Chr4:1552441-1552460 MsG0480018206.01.T01:CDS 35.0%
CAAGAAAACTAAGCTAAGAG+TGG - Chr4:1554022-1554041 None:intergenic 35.0%
CAATGAAAGCTGGATTTAGT+GGG + Chr4:1552483-1552502 MsG0480018206.01.T01:CDS 35.0%
CATTTGGTTGGATTGAAATC+AGG - Chr4:1551555-1551574 None:intergenic 35.0%
CCAAGAAAACTTGGTAGAAA+AGG - Chr4:1552142-1552161 None:intergenic 35.0%
CTATATTATTCCCCAGCATA+AGG - Chr4:1555269-1555288 None:intergenic 35.0%
CTCCTTGCATTTGCAAATAA+GGG - Chr4:1552837-1552856 None:intergenic 35.0%
CTTCTCAATTTACCCAATGA+CGG + Chr4:1551049-1551068 MsG0480018206.01.T01:CDS 35.0%
GAAGAAGAAGAAGAAGAAGA+GGG - Chr4:1550923-1550942 None:intergenic 35.0%
GAATCAAATACACAGATGTG+GGG - Chr4:1554953-1554972 None:intergenic 35.0%
GACTTATCCCAGATCAAAAT+GGG - Chr4:1552117-1552136 None:intergenic 35.0%
GCATACTTCAATCTTAGATG+AGG - Chr4:1552251-1552270 None:intergenic 35.0%
TCATCGTAAAATATCTCAGG+TGG - Chr4:1550846-1550865 None:intergenic 35.0%
TGACTTATCCCAGATCAAAA+TGG - Chr4:1552118-1552137 None:intergenic 35.0%
TGGGTTCTGTTTAGAAGTTA+GGG + Chr4:1554085-1554104 MsG0480018206.01.T01:intron 35.0%
TTCAATGTTACGGGAATTAG+AGG - Chr4:1550889-1550908 None:intergenic 35.0%
TTCCCGTAACATTGAAATTC+AGG + Chr4:1550893-1550912 MsG0480018206.01.T01:CDS 35.0%
TTGAACATTTCTTGCGTTTC+TGG + Chr4:1555548-1555567 MsG0480018206.01.T01:three_prime_UTR 35.0%
TTGGGTTCTGTTTAGAAGTT+AGG + Chr4:1554084-1554103 MsG0480018206.01.T01:intron 35.0%
! AGCAGTATTTCAAGTGTATC+CGG + Chr4:1552424-1552443 MsG0480018206.01.T01:CDS 35.0%
! ATTTTTATCAAGGGATGGAC+AGG - Chr4:1551658-1551677 None:intergenic 35.0%
! ATTTTTGTGAGAACCGATGA+AGG + Chr4:1552999-1553018 MsG0480018206.01.T01:intron 35.0%
! CATGATATATGTGTTGATGG+TGG + Chr4:1553288-1553307 MsG0480018206.01.T01:intron 35.0%
! CCTTTTCTACCAAGTTTTCT+TGG + Chr4:1552139-1552158 MsG0480018206.01.T01:intron 35.0%
! GAGTATCTTTTTCTCGTATG+TGG + Chr4:1554849-1554868 MsG0480018206.01.T01:CDS 35.0%
! TACCCTTATTTGCAAATGCA+AGG + Chr4:1552832-1552851 MsG0480018206.01.T01:intron 35.0%
! TACGCTATCGGTATTGAATA+TGG - Chr4:1552809-1552828 None:intergenic 35.0%
! TCGTCTTCAGTTTTACCTTT+GGG - Chr4:1554891-1554910 None:intergenic 35.0%
! TTTTCTTGCAGTTGGGTTTT+GGG + Chr4:1554066-1554085 MsG0480018206.01.T01:intron 35.0%
!! AAAGAGTGCCTATAAGCAAT+GGG - Chr4:1552689-1552708 None:intergenic 35.0%
!! ACTTTTACGATTTGGGCTTA+GGG + Chr4:1552904-1552923 MsG0480018206.01.T01:intron 35.0%
!! CTTAGCTTAGTTTTCTTGCA+GGG + Chr4:1554024-1554043 MsG0480018206.01.T01:intron 35.0%
!! GGCATTGACAAGAAAGTTAT+CGG - Chr4:1555238-1555257 None:intergenic 35.0%
!! TACTTTTACGATTTGGGCTT+AGG + Chr4:1552903-1552922 MsG0480018206.01.T01:intron 35.0%
!! TCTTAGCTTAGTTTTCTTGC+AGG + Chr4:1554023-1554042 MsG0480018206.01.T01:intron 35.0%
!!! CTTCGTTTTGGAATGTTTGA+TGG + Chr4:1551899-1551918 MsG0480018206.01.T01:CDS 35.0%
!!! CTTTTTTTGGTCAACTGAAC+AGG - Chr4:1554329-1554348 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + Chr4:1553642-1553661 MsG0480018206.01.T01:intron 35.0%
!!! GGCTTTTTTGTGTTAGGTAA+TGG + Chr4:1555653-1555672 MsG0480018206.01.T01:three_prime_UTR 35.0%
!!! TCGTTTTGGAATGTTTGATG+GGG + Chr4:1551901-1551920 MsG0480018206.01.T01:CDS 35.0%
!!! TTTTGTTTAGGTTGTGGATC+AGG + Chr4:1551291-1551310 MsG0480018206.01.T01:intron 35.0%
AACTAAGCTAAGAGTGGATC+TGG - Chr4:1554016-1554035 None:intergenic 40.0%
AACTTAGGAACACCGTCATT+GGG - Chr4:1551064-1551083 None:intergenic 40.0%
ACTAAGCTAAGAGTGGATCT+GGG - Chr4:1554015-1554034 None:intergenic 40.0%
ACTTAAGAGAGGACTAAGCA+AGG + Chr4:1552931-1552950 MsG0480018206.01.T01:intron 40.0%
AGTGTGTGAATCTAACCACT+AGG + Chr4:1554479-1554498 MsG0480018206.01.T01:intron 40.0%
ATCAAATACACAGATGTGGG+GGG - Chr4:1554951-1554970 None:intergenic 40.0%
ATTTAGTGGGGATATAGTGG+TGG + Chr4:1552496-1552515 MsG0480018206.01.T01:CDS 40.0%
CACTTTAAGTGTGGAGAATC+TGG - Chr4:1554463-1554482 None:intergenic 40.0%
CATATGTGTGAGTGTCCTAT+CGG + Chr4:1551181-1551200 MsG0480018206.01.T01:intron 40.0%
CATCGGTATATCTGCTATTC+AGG + Chr4:1551925-1551944 MsG0480018206.01.T01:CDS 40.0%
CCAAGCACCTGTTCATAAAT+TGG + Chr4:1555084-1555103 MsG0480018206.01.T01:intron 40.0%
CCAATGTCAAGGAGTAACTT+AGG - Chr4:1551079-1551098 None:intergenic 40.0%
CCAATTTATGAACAGGTGCT+TGG - Chr4:1555087-1555106 None:intergenic 40.0%
CCTAAGTTACTCCTTGACAT+TGG + Chr4:1551076-1551095 MsG0480018206.01.T01:CDS 40.0%
CTGAATAGCAGATATACCGA+TGG - Chr4:1551927-1551946 None:intergenic 40.0%
CTGCTATTGACAGCATAGAT+CGG - Chr4:1553780-1553799 None:intergenic 40.0%
CTTGCAACAGATTTGACTGA+TGG - Chr4:1555600-1555619 None:intergenic 40.0%
GCAATGAAAGCTGGATTTAG+TGG + Chr4:1552482-1552501 MsG0480018206.01.T01:CDS 40.0%
GGAATGGATAAAGAGGAAGA+AGG + Chr4:1555424-1555443 MsG0480018206.01.T01:CDS 40.0%
GTCTGTAAGTGTAGATCAGT+TGG + Chr4:1554395-1554414 MsG0480018206.01.T01:intron 40.0%
TAACTTAGGAACACCGTCAT+TGG - Chr4:1551065-1551084 None:intergenic 40.0%
TACCAGGGACATCATTTGTA+GGG + Chr4:1554422-1554441 MsG0480018206.01.T01:intron 40.0%
TCCGGAAAACAATGATCAAC+GGG + Chr4:1552442-1552461 MsG0480018206.01.T01:CDS 40.0%
TGCTATTGACAGCATAGATC+GGG - Chr4:1553779-1553798 None:intergenic 40.0%
TGGATTTAGTGGGGATATAG+TGG + Chr4:1552493-1552512 MsG0480018206.01.T01:CDS 40.0%
TGGGAGTTTATAGCCTTCAT+CGG - Chr4:1553015-1553034 None:intergenic 40.0%
TTGTTTGTCAAGTAGCCTAG+TGG - Chr4:1554497-1554516 None:intergenic 40.0%
! ATCTTTGGTTTCAGGGCTTA+GGG + Chr4:1551876-1551895 MsG0480018206.01.T01:intron 40.0%
! GACAGAATACATCTAGCTTG+TGG + Chr4:1555716-1555735 MsG0480018206.01.T01:three_prime_UTR 40.0%
! GTCGTCTTCAGTTTTACCTT+TGG - Chr4:1554892-1554911 None:intergenic 40.0%
! GTTTTCTTGCAGTTGGGTTT+TGG + Chr4:1554065-1554084 MsG0480018206.01.T01:intron 40.0%
! TACTAGCATACCAAGCATTG+AGG - Chr4:1551376-1551395 None:intergenic 40.0%
! TATCTTTGGTTTCAGGGCTT+AGG + Chr4:1551875-1551894 MsG0480018206.01.T01:intron 40.0%
! TCAAGGGTTTTCTTGCAGTT+GGG + Chr4:1554059-1554078 MsG0480018206.01.T01:intron 40.0%
! TCAGTTTTACCTTTGGGCAA+GGG - Chr4:1554885-1554904 None:intergenic 40.0%
! TCCCGTTGATCATTGTTTTC+CGG - Chr4:1552446-1552465 None:intergenic 40.0%
! TTCAGTTTTACCTTTGGGCA+AGG - Chr4:1554886-1554905 None:intergenic 40.0%
!! ACTAGCATACCAAGCATTGA+GGG - Chr4:1551375-1551394 None:intergenic 40.0%
!! ACTGATCTAGGGGTATTAGT+GGG + Chr4:1553257-1553276 MsG0480018206.01.T01:intron 40.0%
!! AGGGCTTTTCTTTAGCTCAA+GGG + Chr4:1554043-1554062 MsG0480018206.01.T01:intron 40.0%
!! ATAAGGGTATCGTACGCTAT+CGG - Chr4:1552821-1552840 None:intergenic 40.0%
!! CAAAGAGTGCCTATAAGCAA+TGG - Chr4:1552690-1552709 None:intergenic 40.0%
!! GACACTCATTTTGAAAGGGA+GGG - Chr4:1553408-1553427 None:intergenic 40.0%
!! GGATATAGTGGTGGATTATC+AGG + Chr4:1552505-1552524 MsG0480018206.01.T01:CDS 40.0%
!! TAAACAAGGGATAATGGGCT+GGG + Chr4:1554256-1554275 MsG0480018206.01.T01:intron 40.0%
!! TGGTGGTGATTGACTTGAAT+TGG + Chr4:1553305-1553324 MsG0480018206.01.T01:intron 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + Chr4:1553641-1553660 MsG0480018206.01.T01:intron 40.0%
AACGAATTGTGCTCCTGTAG+CGG - Chr4:1553908-1553927 None:intergenic 45.0%
AAGGAGCAGATGAGAAGAAG+AGG + Chr4:1555443-1555462 MsG0480018206.01.T01:CDS 45.0%
ACCAGGGACATCATTTGTAG+GGG + Chr4:1554423-1554442 MsG0480018206.01.T01:intron 45.0%
ACCCTTCTGGTAGCTAATGA+GGG + Chr4:1554189-1554208 MsG0480018206.01.T01:intron 45.0%
ACTCCTTCGAATTGCACACA+GGG - Chr4:1553092-1553111 None:intergenic 45.0%
AGAACGAAAAGGGAAGGGAA+TGG + Chr4:1555408-1555427 MsG0480018206.01.T01:CDS 45.0%
AGGGAAGGGAATGGATAAAG+AGG + Chr4:1555417-1555436 MsG0480018206.01.T01:CDS 45.0%
ATCATAAGGGTCGGTGATTC+AGG + Chr4:1551220-1551239 MsG0480018206.01.T01:intron 45.0%
ATGGACATGTGGCGATCATA+AGG + Chr4:1551206-1551225 MsG0480018206.01.T01:intron 45.0%
ATGTTGACAGTCTCGGATAG+AGG - Chr4:1554731-1554750 None:intergenic 45.0%
CAGATACCAAGTACACTGGT+CGG + Chr4:1555480-1555499 MsG0480018206.01.T01:CDS 45.0%
CCACCCCTTATATTCTCAGA+GGG + Chr4:1554142-1554161 MsG0480018206.01.T01:intron 45.0%
CCTTAAATGCCCTTATGCTG+GGG + Chr4:1555256-1555275 MsG0480018206.01.T01:intron 45.0%
CTACCAGGGACATCATTTGT+AGG + Chr4:1554421-1554440 MsG0480018206.01.T01:intron 45.0%
CTTAGGGCGTAACTTAAGAG+AGG + Chr4:1552920-1552939 MsG0480018206.01.T01:intron 45.0%
GCACGAGATGCAATTCTCAA+CGG - Chr4:1555574-1555593 None:intergenic 45.0%
GCCTTAAATGCCCTTATGCT+GGG + Chr4:1555255-1555274 MsG0480018206.01.T01:intron 45.0%
TACTCCTTCGAATTGCACAC+AGG - Chr4:1553093-1553112 None:intergenic 45.0%
TCATAAGGGTCGGTGATTCA+GGG + Chr4:1551221-1551240 MsG0480018206.01.T01:intron 45.0%
TCCACCCCTTATATTCTCAG+AGG + Chr4:1554141-1554160 MsG0480018206.01.T01:intron 45.0%
TCCCTCATTAGCTACCAGAA+GGG - Chr4:1554193-1554212 None:intergenic 45.0%
TCTTAGATGAGGGTTGTGAG+AGG - Chr4:1552240-1552259 None:intergenic 45.0%
TGCCTTAAATGCCCTTATGC+TGG + Chr4:1555254-1555273 MsG0480018206.01.T01:intron 45.0%
TGGACATGTGGCGATCATAA+GGG + Chr4:1551207-1551226 MsG0480018206.01.T01:intron 45.0%
TTCGTTCTCCTCTATTTCCC+TGG + Chr4:1553922-1553941 MsG0480018206.01.T01:intron 45.0%
TTGACAAAGGCAGAGGTTGA+TGG - Chr4:1553985-1554004 None:intergenic 45.0%
! CAGCCCATTATCCCTTGTTT+AGG - Chr4:1554257-1554276 None:intergenic 45.0%
! CTCAAGGGTTTTCTTGCAGT+TGG + Chr4:1554058-1554077 MsG0480018206.01.T01:intron 45.0%
! GTTAGGTAATGGTCACGTAG+CGG + Chr4:1555664-1555683 MsG0480018206.01.T01:three_prime_UTR 45.0%
!! AGATCAGTTGGTAGCTACCA+GGG + Chr4:1554407-1554426 MsG0480018206.01.T01:intron 45.0%
!! AGGGTTTTGTGAATTGGGAC+CGG + Chr4:1550792-1550811 MsG0480018206.01.T01:five_prime_UTR 45.0%
!! ATAAGAGGGGCACTGATCTA+GGG + Chr4:1553246-1553265 MsG0480018206.01.T01:intron 45.0%
!! ATCTAGGGGTATTAGTGGGA+TGG + Chr4:1553261-1553280 MsG0480018206.01.T01:intron 45.0%
!! CAAAAAGTACCCTTGCCCAA+AGG + Chr4:1554873-1554892 MsG0480018206.01.T01:CDS 45.0%
!! CAACGTCCCCATTTTGATCT+GGG + Chr4:1552107-1552126 MsG0480018206.01.T01:intron 45.0%
!! CACTGATCTAGGGGTATTAG+TGG + Chr4:1553256-1553275 MsG0480018206.01.T01:intron 45.0%
!! CAGGGCTTTTCTTTAGCTCA+AGG + Chr4:1554042-1554061 MsG0480018206.01.T01:intron 45.0%
!! CGACACTCATTTTGAAAGGG+AGG - Chr4:1553409-1553428 None:intergenic 45.0%
!! CTAAACAAGGGATAATGGGC+TGG + Chr4:1554255-1554274 MsG0480018206.01.T01:intron 45.0%
!! GACCTTTTACTCGGTGACAT+GGG + Chr4:1551512-1551531 MsG0480018206.01.T01:CDS 45.0%
!! TAGATCAGTTGGTAGCTACC+AGG + Chr4:1554406-1554425 MsG0480018206.01.T01:intron 45.0%
!! TAGTGGTGGATTATCAGGAC+AGG + Chr4:1552510-1552529 MsG0480018206.01.T01:CDS 45.0%
!! TATAAGAGGGGCACTGATCT+AGG + Chr4:1553245-1553264 MsG0480018206.01.T01:intron 45.0%
AACATTGGGTAGTCCTCCCT+TGG - Chr4:1553188-1553207 None:intergenic 50.0%
ACATTGGGTAGTCCTCCCTT+GGG - Chr4:1553187-1553206 None:intergenic 50.0%
AGATATCGCATTGGAGCGTG+AGG + Chr4:1551481-1551500 MsG0480018206.01.T01:intron 50.0%
AGCTAAGAGTGGATCTGGGA+CGG - Chr4:1554011-1554030 None:intergenic 50.0%
ATGCTGTCAATAGCAGCCGT+GGG + Chr4:1553784-1553803 MsG0480018206.01.T01:intron 50.0%
CAATGTCGAGACCAACCCAA+TGG - Chr4:1551350-1551369 None:intergenic 50.0%
CAATGTGTCAGTGTCGTGTC+CGG - Chr4:1551144-1551163 None:intergenic 50.0%
CACAGAGAGTGGACACCATT+GGG + Chr4:1551332-1551351 MsG0480018206.01.T01:CDS 50.0%
CATGTGGCGATCATAAGGGT+CGG + Chr4:1551211-1551230 MsG0480018206.01.T01:intron 50.0%
CCAAGTACACTGGTCGGAAA+CGG + Chr4:1555486-1555505 MsG0480018206.01.T01:CDS 50.0%
CCAGATCAAAATGGGGACGT+TGG - Chr4:1552109-1552128 None:intergenic 50.0%
CCAGTGTACTTGGTATCTGG+AGG - Chr4:1555479-1555498 None:intergenic 50.0%
CCTCCAGATACCAAGTACAC+TGG + Chr4:1555476-1555495 MsG0480018206.01.T01:CDS 50.0%
CCTTCCGGTGGTGTATTTGA+GGG - Chr4:1554169-1554188 None:intergenic 50.0%
CGACCAGTGTACTTGGTATC+TGG - Chr4:1555482-1555501 None:intergenic 50.0%
CTCCTTCGAATTGCACACAG+GGG - Chr4:1553091-1553110 None:intergenic 50.0%
CTTCCGGTGGTGTATTTGAG+GGG - Chr4:1554168-1554187 None:intergenic 50.0%
GACATTGCACCCTCAATGCT+TGG + Chr4:1551363-1551382 MsG0480018206.01.T01:CDS 50.0%
GACCCATGTCACCGAGTAAA+AGG - Chr4:1551517-1551536 None:intergenic 50.0%
GACCCTTCTGGTAGCTAATG+AGG + Chr4:1554188-1554207 MsG0480018206.01.T01:intron 50.0%
GAGGACTGCCCATTGCTTAT+AGG + Chr4:1552678-1552697 MsG0480018206.01.T01:intron 50.0%
GCTCTTCTGAGTCGCTAACA+TGG - Chr4:1553879-1553898 None:intergenic 50.0%
GGAATGTTTGATGGGGCCAT+CGG + Chr4:1551908-1551927 MsG0480018206.01.T01:CDS 50.0%
GGTCCCAATTCACAAAACCC+TGG - Chr4:1550793-1550812 None:intergenic 50.0%
GGTTGTGGATCAGGACTTAG+CGG + Chr4:1551300-1551319 MsG0480018206.01.T01:intron 50.0%
GTCCCTCATTAGCTACCAGA+AGG - Chr4:1554194-1554213 None:intergenic 50.0%
TACCCCTGTGTGCAATTCGA+AGG + Chr4:1553086-1553105 MsG0480018206.01.T01:intron 50.0%
TATGCTGTCAATAGCAGCCG+TGG + Chr4:1553783-1553802 MsG0480018206.01.T01:intron 50.0%
TCCTATCGGACATGGACATG+TGG + Chr4:1551195-1551214 MsG0480018206.01.T01:intron 50.0%
TCCTTCCGGTGGTGTATTTG+AGG - Chr4:1554170-1554189 None:intergenic 50.0%
TGTGAGTGTCCTATCGGACA+TGG + Chr4:1551187-1551206 MsG0480018206.01.T01:intron 50.0%
TTCAATGACTGAGCGAGCTC+TGG + Chr4:1551024-1551043 MsG0480018206.01.T01:CDS 50.0%
TTGTGAATTGGGACCGGGAT+GGG + Chr4:1550798-1550817 MsG0480018206.01.T01:exon 50.0%
TTTGTGAATTGGGACCGGGA+TGG + Chr4:1550797-1550816 MsG0480018206.01.T01:exon 50.0%
! AGGGGCCCTCTGAGAATATA+AGG - Chr4:1554150-1554169 None:intergenic 50.0%
! ATGAACAGGTGCTTGGTGAC+AGG - Chr4:1555080-1555099 None:intergenic 50.0%
! CCCTCTGAGAATATAAGGGG+TGG - Chr4:1554145-1554164 None:intergenic 50.0%
! GACTTTGGTCACAAAGCACC+TGG + Chr4:1555035-1555054 MsG0480018206.01.T01:intron 50.0%
! GATGGGTTCAAGACCAGAGA+CGG + Chr4:1550815-1550834 MsG0480018206.01.T01:exon 50.0%
! GGGCCCTCTGAGAATATAAG+GGG - Chr4:1554148-1554167 None:intergenic 50.0%
! GGGGCCCTCTGAGAATATAA+GGG - Chr4:1554149-1554168 None:intergenic 50.0%
! GTTGAGGGCGACCTTTTACT+CGG + Chr4:1551503-1551522 MsG0480018206.01.T01:CDS 50.0%
! TCGAGTGCTGCAATGAAAGC+TGG + Chr4:1552473-1552492 MsG0480018206.01.T01:CDS 50.0%
! TTTACTCGGTGACATGGGTC+AGG + Chr4:1551517-1551536 MsG0480018206.01.T01:CDS 50.0%
!! ACAAAGGCAGAGGTTGATGG+CGG - Chr4:1553982-1554001 None:intergenic 50.0%
!! CCAACGTCCCCATTTTGATC+TGG + Chr4:1552106-1552125 MsG0480018206.01.T01:intron 50.0%
!! CCCCAGCATAAGGGCATTTA+AGG - Chr4:1555259-1555278 None:intergenic 50.0%
!! CGACCTTTTACTCGGTGACA+TGG + Chr4:1551511-1551530 MsG0480018206.01.T01:CDS 50.0%
!! GGGTTTTGTGAATTGGGACC+GGG + Chr4:1550793-1550812 MsG0480018206.01.T01:five_prime_UTR 50.0%
!! TAAGAGGGGCACTGATCTAG+GGG + Chr4:1553247-1553266 MsG0480018206.01.T01:intron 50.0%
ACGGAGGTTGACAAAGGCAG+AGG - Chr4:1553992-1554011 None:intergenic 55.0%
ACTGAAGACGACGACGACAG+TGG + Chr4:1554900-1554919 MsG0480018206.01.T01:CDS 55.0%
AGCTACCAGAAGGGTCCTTC+CGG - Chr4:1554184-1554203 None:intergenic 55.0%
CCAATGGTGTCCACTCTCTG+TGG - Chr4:1551334-1551353 None:intergenic 55.0%
CCACAGAGAGTGGACACCAT+TGG + Chr4:1551331-1551350 MsG0480018206.01.T01:CDS 55.0%
CCCTCAAATACACCACCGGA+AGG + Chr4:1554166-1554185 MsG0480018206.01.T01:intron 55.0%
CCGTTTCCGACCAGTGTACT+TGG - Chr4:1555489-1555508 None:intergenic 55.0%
GACAGTCTCGGATAGAGGAG+TGG - Chr4:1554726-1554745 None:intergenic 55.0%
GAGAGTGGACACCATTGGGT+TGG + Chr4:1551336-1551355 MsG0480018206.01.T01:CDS 55.0%
GCATTGGAGCGTGAGGTTGA+GGG + Chr4:1551488-1551507 MsG0480018206.01.T01:CDS 55.0%
GCCACATGTCCATGTCCGAT+AGG - Chr4:1551199-1551218 None:intergenic 55.0%
GCCCCTACAAATGATGTCCC+TGG - Chr4:1554427-1554446 None:intergenic 55.0%
GGGTTTAGGGGGTAACCCAA+GGG + Chr4:1553169-1553188 MsG0480018206.01.T01:intron 55.0%
GGTGACGTAACCACAGAGAG+TGG + Chr4:1551321-1551340 MsG0480018206.01.T01:CDS 55.0%
GTTGCAACTCTCTTCTGCGC+AGG - Chr4:1553850-1553869 None:intergenic 55.0%
TCTATTTCCCTGGTCGCCAC+CGG + Chr4:1553932-1553951 MsG0480018206.01.T01:intron 55.0%
TGGGTTTAGGGGGTAACCCA+AGG + Chr4:1553168-1553187 MsG0480018206.01.T01:intron 55.0%
TTTAGGGGGTAACCCAAGGG+AGG + Chr4:1553172-1553191 MsG0480018206.01.T01:intron 55.0%
! CAGGGCTTAGGGCTTCGTTT+TGG + Chr4:1551887-1551906 MsG0480018206.01.T01:intron 55.0%
! TAAGAGTGGATCTGGGACGG+AGG - Chr4:1554008-1554027 None:intergenic 55.0%
! TCTGGGACGGAGGTTGACAA+AGG - Chr4:1553998-1554017 None:intergenic 55.0%
!! AAGGGATAATGGGCTGGGTC+TGG + Chr4:1554261-1554280 MsG0480018206.01.T01:intron 55.0%
!! CTCTGGTCTTGAACCCATCC+CGG - Chr4:1550814-1550833 None:intergenic 55.0%
!! GAAGAGCATTGTGCCGCTAC+AGG + Chr4:1553892-1553911 MsG0480018206.01.T01:intron 55.0%
AGGTTCGCCTTGTGTGGCAG+AGG - Chr4:1553830-1553849 None:intergenic 60.0%
CGCATTGGAGCGTGAGGTTG+AGG + Chr4:1551487-1551506 MsG0480018206.01.T01:CDS 60.0%
CTTAGGGCCTAGCTCAAGGG+AGG + Chr4:1552659-1552678 MsG0480018206.01.T01:intron 60.0%
GGGCCCCTCAAATACACCAC+CGG + Chr4:1554162-1554181 MsG0480018206.01.T01:intron 60.0%
GGGCTTAGGGCCTAGCTCAA+GGG + Chr4:1552656-1552675 MsG0480018206.01.T01:intron 60.0%
GGTGGCGACCAGGGAAATAG+AGG - Chr4:1553933-1553952 None:intergenic 60.0%
TACCAGAAGGGTCCTTCCGG+TGG - Chr4:1554181-1554200 None:intergenic 60.0%
TCAGGTGGAGCTACCGTCTC+TGG - Chr4:1550831-1550850 None:intergenic 60.0%
TGGGCTTAGGGCCTAGCTCA+AGG + Chr4:1552655-1552674 MsG0480018206.01.T01:intron 60.0%
!! TGGCTAGCCTCTGCCACACA+AGG + Chr4:1553820-1553839 MsG0480018206.01.T01:intron 60.0%
AATAGCAGCCGTGGGCGACG+TGG + Chr4:1553792-1553811 MsG0480018206.01.T01:intron 65.0%
CACCACCGGAAGGACCCTTC+TGG + Chr4:1554176-1554195 MsG0480018206.01.T01:intron 65.0%
CCACTGTTCCACGTCGCCCA+CGG - Chr4:1553803-1553822 None:intergenic 65.0%
CTGCGCAGGTTCGCCTTGTG+TGG - Chr4:1553836-1553855 None:intergenic 65.0%
GATGGCAGGGGATGGAACGC+CGG - Chr4:1553954-1553973 None:intergenic 65.0%
GGGCAGTCCTCCCTTGAGCT+AGG - Chr4:1552669-1552688 None:intergenic 65.0%
!! AGGCAGAGGTTGATGGCGGC+TGG - Chr4:1553978-1553997 None:intergenic 65.0%
!! AGGTTGATGGCGGCTGGCGA+TGG - Chr4:1553972-1553991 None:intergenic 65.0%
ATGGAACGCCGGTGGCGACC+AGG - Chr4:1553943-1553962 None:intergenic 70.0%
ATGGCGGCTGGCGATGGCAG+GGG - Chr4:1553966-1553985 None:intergenic 70.0%
CCGTGGGCGACGTGGAACAG+TGG + Chr4:1553800-1553819 MsG0480018206.01.T01:intron 70.0%
TGGAACGCCGGTGGCGACCA+GGG - Chr4:1553942-1553961 None:intergenic 70.0%
! GATGGCGGCTGGCGATGGCA+GGG - Chr4:1553967-1553986 None:intergenic 70.0%
!! TGATGGCGGCTGGCGATGGC+AGG - Chr4:1553968-1553987 None:intergenic 70.0%
CGGCTGGCGATGGCAGGGGA+TGG - Chr4:1553962-1553981 None:intergenic 75.0%
GGCAGGGGATGGAACGCCGG+TGG - Chr4:1553951-1553970 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1550788 1555846 1550788 ID=MsG0480018206.01;Name=MsG0480018206.01
Chr4 mRNA 1550788 1555846 1550788 ID=MsG0480018206.01.T01;Parent=MsG0480018206.01;Name=MsG0480018206.01.T01;_AED=0.38;_eAED=0.38;_QI=28|1|1|1|1|1|9|323|282
Chr4 exon 1550788 1550914 1550788 ID=MsG0480018206.01.T01:exon:953;Parent=MsG0480018206.01.T01
Chr4 exon 1551022 1551097 1551022 ID=MsG0480018206.01.T01:exon:954;Parent=MsG0480018206.01.T01
Chr4 exon 1551301 1551384 1551301 ID=MsG0480018206.01.T01:exon:955;Parent=MsG0480018206.01.T01
Chr4 exon 1551483 1551538 1551483 ID=MsG0480018206.01.T01:exon:956;Parent=MsG0480018206.01.T01
Chr4 exon 1551890 1551946 1551890 ID=MsG0480018206.01.T01:exon:957;Parent=MsG0480018206.01.T01
Chr4 exon 1552215 1552264 1552215 ID=MsG0480018206.01.T01:exon:958;Parent=MsG0480018206.01.T01
Chr4 exon 1552379 1552531 1552379 ID=MsG0480018206.01.T01:exon:959;Parent=MsG0480018206.01.T01
Chr4 exon 1554833 1554941 1554833 ID=MsG0480018206.01.T01:exon:960;Parent=MsG0480018206.01.T01
Chr4 exon 1555359 1555846 1555359 ID=MsG0480018206.01.T01:exon:961;Parent=MsG0480018206.01.T01
Chr4 five_prime_UTR 1550788 1550815 1550788 ID=MsG0480018206.01.T01:five_prime_utr;Parent=MsG0480018206.01.T01
Chr4 CDS 1550816 1550914 1550816 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1551022 1551097 1551022 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1551301 1551384 1551301 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1551483 1551538 1551483 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1551890 1551946 1551890 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1552215 1552264 1552215 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1552379 1552531 1552379 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1554833 1554941 1554833 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 CDS 1555359 1555523 1555359 ID=MsG0480018206.01.T01:cds;Parent=MsG0480018206.01.T01
Chr4 three_prime_UTR 1555524 1555846 1555524 ID=MsG0480018206.01.T01:three_prime_utr;Parent=MsG0480018206.01.T01
Gene Sequence

>MsG0480018206.01.T01

ATGGGTTCAAGACCAGAGACGGTAGCTCCACCTGAGATATTTTACGATGATGACACAGCACGCAAATATACCTCTAATTCCCGTAACATTGAAATTCAGACTTCAATGACTGAGCGAGCTCTGGAGCTTCTCAATTTACCCAATGACGGTGTTCCTAAGTTACTCCTTGACATTGGTTGTGGATCAGGACTTAGCGGTGACGTAACCACAGAGAGTGGACACCATTGGGTTGGTCTCGACATTGCACCCTCAATGCTTGATATCGCATTGGAGCGTGAGGTTGAGGGCGACCTTTTACTCGGTGACATGGGTCAGGGCTTAGGGCTTCGTTTTGGAATGTTTGATGGGGCCATCGGTATATCTGCTATTCAGTGGTTATGTAATGCTGATAAATCCTCTCACAACCCTCATCTAAGATTGAAGGCTTTTTTTACATCCTTATACAAATGCTTGACAAATGGGGCAAGAGCAGTATTTCAAGTGTATCCGGAAAACAATGATCAACGGGAATTGATGTCGAGTGCTGCAATGAAAGCTGGATTTAGTGGGGATATAGTGGTGGATTATCAGGACAGTCCTAAGAAGAGAAAAGAGTATCTTTTTCTCGTATGTGGTCAAAAAGTACCCTTGCCCAAAGGTAAAACTGAAGACGACGACGACAGTGGAAGTGAAACAAATAAAACAGTATATGTTTTAGACAGAAATAGACCTTGGAAGAAACAGAAATATAATAAGAACGAAAAGGGAAGGGAATGGATAAAGAGGAAGAAGGAGCAGATGAGAAGAAGAGGAGATGATGTTCCTCCAGATACCAAGTACACTGGTCGGAAACGGAAAAATCGCTTTTGA
Protein sequence

>MsG0480018206.01.T01

MGSRPETVAPPEIFYDDDTARKYTSNSRNIEIQTSMTERALELLNLPNDGVPKLLLDIGCGSGLSGDVTTESGHHWVGLDIAPSMLDIALEREVEGDLLLGDMGQGLGLRFGMFDGAIGISAIQWLCNADKSSHNPHLRLKAFFTSLYKCLTNGARAVFQVYPENNDQRELMSSAAMKAGFSGDIVVDYQDSPKKRKEYLFLVCGQKVPLPKGKTEDDDDSGSETNKTVYVLDRNRPWKKQKYNKNEKGREWIKRKKEQMRRRGDDVPPDTKYTGRKRKNRF*