AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006227.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006227.01.T01 MTR_1g116270 80.137 292 25 2 27 285 18 309 1.82e-168 469
MsG0180006227.01.T01 MTR_7g100320 58.621 203 81 2 86 285 33 235 1.02e-78 238
MsG0180006227.01.T01 MTR_1g067180 59.140 186 75 1 99 283 49 234 6.43e-76 231
MsG0180006227.01.T01 MTR_1g067180 59.140 186 75 1 99 283 46 231 6.94e-76 231
MsG0180006227.01.T01 MTR_1g067180 60.000 165 64 2 99 262 49 212 1.16e-65 204
MsG0180006227.01.T01 MTR_1g067170 46.847 222 91 2 66 285 11 207 2.08e-61 194
MsG0180006227.01.T01 MTR_1g067150 49.038 208 78 2 79 284 22 203 6.42e-58 200
MsG0180006227.01.T01 MTR_1g067180 60.317 126 49 1 99 223 49 174 5.29e-49 161
MsG0180006227.01.T01 MTR_1g067180 60.484 124 48 1 99 221 49 172 1.04e-48 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006227.01.T01 AT3G55040 64.674 184 64 1 99 281 102 285 3.68e-83 252
MsG0180006227.01.T01 AT5G02790 57.692 208 85 2 79 283 28 235 7.63e-81 244
MsG0180006227.01.T01 AT5G02780 58.201 189 76 3 97 283 50 237 3.39e-73 224
MsG0180006227.01.T01 AT5G02780 58.201 189 76 3 97 283 50 237 3.39e-73 224
MsG0180006227.01.T01 AT5G02780 58.511 188 75 3 97 283 50 235 9.33e-73 223

Find 66 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGCAAGGCCACAGATTT+TGG 0.183588 1:-101599738 MsG0180006227.01.T01:CDS
GACTGAGAACAAACTATTAT+TGG 0.219954 1:+101599760 None:intergenic
GAAAGGTCCGCGATCATATT+TGG 0.236113 1:+101598247 None:intergenic
TCATCATCATATAGGAATTA+TGG 0.265649 1:-101599813 MsG0180006227.01.T01:CDS
ATCTACAAGACAGACCTTCT+TGG 0.322770 1:-101598965 MsG0180006227.01.T01:CDS
TGAAGTTAGAGGAGAGAGTC+TGG 0.356107 1:-101598772 MsG0180006227.01.T01:CDS
TATATTGACACTCACTTTGA+AGG 0.358114 1:-101598738 MsG0180006227.01.T01:CDS
CTTCCTTGGCCAATTCAGTC+TGG 0.360188 1:-101598225 MsG0180006227.01.T01:intron
GCAGACATACCCGGTTGATA+TGG 0.381805 1:+101599586 None:intergenic
GAACACAATAATGAAGTTAG+AGG 0.398648 1:-101598783 MsG0180006227.01.T01:CDS
GATCGCGGACCTTTCTTCCT+TGG 0.399805 1:-101598239 MsG0180006227.01.T01:CDS
TATAGCATATGCTCCTTTCA+TGG 0.403086 1:-101598082 MsG0180006227.01.T01:CDS
TAAGGATAAATAACCTTGTT+GGG 0.403441 1:+101598921 None:intergenic
GTATCTCACACTAGGGTAAA+GGG 0.404706 1:+101598710 None:intergenic
TAGCTTTCAACTAACTCCTT+AGG 0.406704 1:+101597570 None:intergenic
ACAACAGTTGCCATATCAAC+CGG 0.414250 1:-101599596 MsG0180006227.01.T01:CDS
GTGGAAATGGATGGCAGATA+TGG 0.418327 1:+101599691 None:intergenic
ATTCATTGTCATCATCATAT+AGG 0.423743 1:-101599821 MsG0180006227.01.T01:CDS
AGGTCTGTCTTGTAGATCAA+TGG 0.438145 1:+101598971 None:intergenic
ATAAGGATAAATAACCTTGT+TGG 0.448370 1:+101598920 None:intergenic
TAAATAGGGTCATGATGATA+AGG 0.452204 1:-101598618 MsG0180006227.01.T01:intron
AAGCTACAAGAAGCGATTCC+TGG 0.453316 1:-101597553 MsG0180006227.01.T01:CDS
GTATACGCACCAGACTGAAT+TGG 0.454158 1:+101598216 None:intergenic
GCTTATTATGAGGTGAATAG+TGG 0.457123 1:+101599672 None:intergenic
TATGAGGTGAATAGTGGAAA+TGG 0.459487 1:+101599678 None:intergenic
AAAGGAGATGCAACTGAGGC+TGG 0.461674 1:-101598533 MsG0180006227.01.T01:intron
CAGGGAATAAACAGCATTGA+AGG 0.470738 1:-101597615 MsG0180006227.01.T01:CDS
AGTATCTCACACTAGGGTAA+AGG 0.474393 1:+101598709 None:intergenic
GGTCTGTCTTGTAGATCAAT+GGG 0.491503 1:+101598972 None:intergenic
CTGAATTGGCCAAGGAAGAA+AGG 0.493947 1:+101598230 None:intergenic
GAGCTCAGCTTAGCCTCAGC+AGG 0.496465 1:+101599560 None:intergenic
CAGAATTAAACCGCCGTCGA+AGG 0.505283 1:+101599645 None:intergenic
TAACTCCTTAGGATCAGAAC+GGG 0.507962 1:+101597581 None:intergenic
GTTATGGAAGCAGGGACTGC+AGG 0.511183 1:-101599012 MsG0180006227.01.T01:intron
AATAACCCGTTCTGATCCTA+AGG 0.511599 1:-101597586 MsG0180006227.01.T01:CDS
TCATTATTGTGTTCAAGAGA+TGG 0.511615 1:+101598792 None:intergenic
TCAATCCATGCTGTCAGTCT+AGG 0.523252 1:+101598003 None:intergenic
CAACTGTTGTCACGCGAACA+TGG 0.523789 1:+101599609 None:intergenic
TCTGTCTTATTTATGATACC+AGG 0.530263 1:+101597535 None:intergenic
GATAAATAACCTTGTTGGGT+GGG 0.537520 1:+101598925 None:intergenic
GGTTGAAATCTTTCCATGAA+AGG 0.546893 1:+101598069 None:intergenic
ATAAGCTTCACCTTCGACGG+CGG 0.549183 1:-101599655 MsG0180006227.01.T01:CDS
CGAAGGTGAAGCTTATTATG+AGG 0.551058 1:+101599662 None:intergenic
ACTTTGTCCTTGTACCAAGA+AGG 0.553580 1:+101598951 None:intergenic
ATTATGACATTACAGTGGGC+AGG 0.560090 1:-101598026 MsG0180006227.01.T01:CDS
AGACAGACCTTCTTGGTACA+AGG 0.563276 1:-101598958 MsG0180006227.01.T01:CDS
CAGATATGGACATGAAAGGA+AGG 0.564706 1:+101599705 None:intergenic
GGATAAATAACCTTGTTGGG+TGG 0.582873 1:+101598924 None:intergenic
GTATGTCTGCTTGCCTGCTG+AGG 0.594047 1:-101599573 MsG0180006227.01.T01:CDS
TAGACTGACAGCATGGATTG+AGG 0.598743 1:-101598001 MsG0180006227.01.T01:intron
ATAATAAGCTTCACCTTCGA+CGG 0.605217 1:-101599658 MsG0180006227.01.T01:CDS
CAAAGTCTACCCACCCAACA+AGG 0.610218 1:-101598934 MsG0180006227.01.T01:intron
AGATATGGACATGAAAGGAA+GGG 0.611763 1:+101599706 None:intergenic
AGCAGGCAAGCAGACATACC+CGG 0.611899 1:+101599577 None:intergenic
ATGGCAGATATGGACATGAA+AGG 0.635823 1:+101599701 None:intergenic
CAACAGTTGCCATATCAACC+GGG 0.643196 1:-101599595 MsG0180006227.01.T01:CDS
GCAGGCCTAGACTGACAGCA+TGG 0.643697 1:-101598008 MsG0180006227.01.T01:CDS
AGGTGAATAGTGGAAATGGA+TGG 0.645679 1:+101599682 None:intergenic
ATTTGGAGAGAACAGTCTCA+AGG 0.647917 1:+101598264 None:intergenic
GCACCAGACTGAATTGGCCA+AGG 0.652421 1:+101598222 None:intergenic
GTTTGTTCTCAGTCTCAGCA+AGG 0.652630 1:-101599751 MsG0180006227.01.T01:CDS
GAAGAAGTAACCAAAATCTG+TGG 0.656679 1:+101599728 None:intergenic
CTAACTCCTTAGGATCAGAA+CGG 0.661345 1:+101597580 None:intergenic
GTTCTCTCCAAATATGATCG+CGG 0.676499 1:-101598254 MsG0180006227.01.T01:CDS
TCTCACACTAGGGTAAAGGG+AGG 0.686990 1:+101598713 None:intergenic
CTCACACTAGGGTAAAGGGA+GGG 0.728160 1:+101598714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTACTATTTAATAAAT+AGG - Chr1:101598739-101598758 MsG0180006227.01.T01:CDS 10.0%
!! ACTTTACTATTTAATAAATA+GGG - Chr1:101598740-101598759 MsG0180006227.01.T01:CDS 10.0%
!!! TAAAGTTTATGTTTATATTT+TGG + Chr1:101598726-101598745 None:intergenic 10.0%
!!! AATATTTGATGATATAACTA+TGG - Chr1:101599450-101599469 MsG0180006227.01.T01:intron 15.0%
!!! ATATTTGATGATATAACTAT+GGG - Chr1:101599451-101599470 MsG0180006227.01.T01:intron 15.0%
!! AAAAATTATGACATTACAGT+GGG - Chr1:101599342-101599361 MsG0180006227.01.T01:intron 20.0%
!! AAAATCACAAACCATTAAAA+AGG + Chr1:101598302-101598321 None:intergenic 20.0%
!! TAAGGTTATTCTTCATATAT+TGG - Chr1:101598176-101598195 MsG0180006227.01.T01:intron 20.0%
!!! AAAAATCACTATTTAGAATG+TGG + Chr1:101598527-101598546 None:intergenic 20.0%
!!! CAAAGTTTTCTATTAATTTC+AGG - Chr1:101599263-101599282 MsG0180006227.01.T01:intron 20.0%
!!! TAAAACAAACACCTTTTTAA+TGG - Chr1:101598288-101598307 MsG0180006227.01.T01:intron 20.0%
!!! TTAATTTGTGTTAGTTTGTT+TGG + Chr1:101598051-101598070 None:intergenic 20.0%
!!! TTTTTCACATCCATTAAAAA+CGG + Chr1:101599327-101599346 None:intergenic 20.0%
! AAAATTGTGCTCTTAATACA+GGG - Chr1:101599739-101599758 MsG0180006227.01.T01:CDS 25.0%
! ATAAGGATAAATAACCTTGT+TGG + Chr1:101598455-101598474 None:intergenic 25.0%
! ATTCATTGTCATCATCATAT+AGG - Chr1:101597551-101597570 MsG0180006227.01.T01:CDS 25.0%
! ATTTATGTATTTCCAATTCC+AGG - Chr1:101598555-101598574 MsG0180006227.01.T01:CDS 25.0%
! GAAAAATTATGACATTACAG+TGG - Chr1:101599341-101599360 MsG0180006227.01.T01:intron 25.0%
! TAAAATTGTGCTCTTAATAC+AGG - Chr1:101599738-101599757 MsG0180006227.01.T01:CDS 25.0%
! TAAGGATAAATAACCTTGTT+GGG + Chr1:101598454-101598473 None:intergenic 25.0%
! TCATCATCATATAGGAATTA+TGG - Chr1:101597559-101597578 MsG0180006227.01.T01:CDS 25.0%
!! AACAAAACATATCATGGTTT+TGG + Chr1:101598487-101598506 None:intergenic 25.0%
!! AATATAAAGTATCTCACACT+AGG + Chr1:101598673-101598692 None:intergenic 25.0%
!! AGTTTTCTATTAATTTCAGG+TGG - Chr1:101599266-101599285 MsG0180006227.01.T01:intron 25.0%
!! ATATAAAGTATCTCACACTA+GGG + Chr1:101598672-101598691 None:intergenic 25.0%
!! TGATTTTCACACAATTTATC+TGG - Chr1:101598315-101598334 MsG0180006227.01.T01:intron 25.0%
!!! AAGATTTCAACCGTTTTTAA+TGG - Chr1:101599314-101599333 MsG0180006227.01.T01:intron 25.0%
!!! ACAGTTGTTGCTTATTTTAA+AGG - Chr1:101598821-101598840 MsG0180006227.01.T01:intron 25.0%
!!! GTATATACTGTTTTTACAAC+AGG + Chr1:101598254-101598273 None:intergenic 25.0%
AAATGTTGAATCTGGAGAAA+GGG - Chr1:101598912-101598931 MsG0180006227.01.T01:intron 30.0%
AACCGTCATTTCATTGTTTA+GGG - Chr1:101598941-101598960 MsG0180006227.01.T01:CDS 30.0%
AAGAATAACCTTAGTGTTAC+GGG + Chr1:101598169-101598188 None:intergenic 30.0%
AGATAAGAAAGTAAGAAACC+TGG + Chr1:101598019-101598038 None:intergenic 30.0%
CAAGATCTCTATGTATGTTA+TGG - Chr1:101598344-101598363 MsG0180006227.01.T01:intron 30.0%
GAACACAATAATGAAGTTAG+AGG - Chr1:101598589-101598608 MsG0180006227.01.T01:CDS 30.0%
GAAGAATAACCTTAGTGTTA+CGG + Chr1:101598170-101598189 None:intergenic 30.0%
GACTGAGAACAAACTATTAT+TGG + Chr1:101597615-101597634 None:intergenic 30.0%
TAAATAGGGTCATGATGATA+AGG - Chr1:101598754-101598773 MsG0180006227.01.T01:CDS 30.0%
TACAAGAGAAATGTTGAATC+TGG - Chr1:101598904-101598923 MsG0180006227.01.T01:intron 30.0%
TATATTGACACTCACTTTGA+AGG - Chr1:101598634-101598653 MsG0180006227.01.T01:intron 30.0%
TCATTATTGTGTTCAAGAGA+TGG + Chr1:101598583-101598602 None:intergenic 30.0%
TTAATTATTGAGTGAAGCTC+AGG + Chr1:101599721-101599740 None:intergenic 30.0%
TTCCACAACAAAACATATCA+TGG + Chr1:101598493-101598512 None:intergenic 30.0%
!! AACCATGATATGTTTTGTTG+TGG - Chr1:101598488-101598507 MsG0180006227.01.T01:intron 30.0%
!!! CGCTTTTGATCTTTATTTTC+AGG - Chr1:101598699-101598718 MsG0180006227.01.T01:intron 30.0%
AATGTTGAATCTGGAGAAAG+GGG - Chr1:101598913-101598932 MsG0180006227.01.T01:intron 35.0%
ACATATTCATGTCATACCCA+AGG + Chr1:101599669-101599688 None:intergenic 35.0%
ACCAATAAAGATGGAACCTT+GGG - Chr1:101599650-101599669 MsG0180006227.01.T01:CDS 35.0%
ACCGTCATTTCATTGTTTAG+GGG - Chr1:101598942-101598961 MsG0180006227.01.T01:CDS 35.0%
AGATATGGACATGAAAGGAA+GGG + Chr1:101597669-101597688 None:intergenic 35.0%
ATAATAAGCTTCACCTTCGA+CGG - Chr1:101597714-101597733 MsG0180006227.01.T01:intron 35.0%
CAATGAGTTTGCCATAATCA+TGG + Chr1:101599589-101599608 None:intergenic 35.0%
CTAACGTAGACCAATAAAGA+TGG - Chr1:101599641-101599660 MsG0180006227.01.T01:CDS 35.0%
CTATGTATGTTATGGAAGCA+GGG - Chr1:101598352-101598371 MsG0180006227.01.T01:intron 35.0%
GAAATGTTGAATCTGGAGAA+AGG - Chr1:101598911-101598930 MsG0180006227.01.T01:intron 35.0%
GAACCGTCATTTCATTGTTT+AGG - Chr1:101598940-101598959 MsG0180006227.01.T01:CDS 35.0%
GAAGAAGTAACCAAAATCTG+TGG + Chr1:101597647-101597666 None:intergenic 35.0%
GATAAATAACCTTGTTGGGT+GGG + Chr1:101598450-101598469 None:intergenic 35.0%
GCTTATTATGAGGTGAATAG+TGG + Chr1:101597703-101597722 None:intergenic 35.0%
GGTTGAAATCTTTCCATGAA+AGG + Chr1:101599306-101599325 None:intergenic 35.0%
GTATGACATGAATATGTCAC+AGG - Chr1:101599672-101599691 MsG0180006227.01.T01:CDS 35.0%
GTCAATAATGCACAGTATAG+TGG - Chr1:101599199-101599218 MsG0180006227.01.T01:intron 35.0%
TAAGAAAGTAAGAAACCTGG+TGG + Chr1:101598016-101598035 None:intergenic 35.0%
TAGCTTTCAACTAACTCCTT+AGG + Chr1:101599805-101599824 None:intergenic 35.0%
TATAGCATATGCTCCTTTCA+TGG - Chr1:101599290-101599309 MsG0180006227.01.T01:intron 35.0%
TCATTGTTTAGGGGGAAATA+AGG - Chr1:101598951-101598970 MsG0180006227.01.T01:CDS 35.0%
TCTATGTATGTTATGGAAGC+AGG - Chr1:101598351-101598370 MsG0180006227.01.T01:intron 35.0%
TGTGATTTCAAGCATACACT+TGG - Chr1:101599607-101599626 MsG0180006227.01.T01:CDS 35.0%
! TATGAGGTGAATAGTGGAAA+TGG + Chr1:101597697-101597716 None:intergenic 35.0%
!! ATTGCATTGAGGTCGTTTTA+TGG - Chr1:101599487-101599506 MsG0180006227.01.T01:intron 35.0%
!! GGTTTTGGCACAAAGTTATA+AGG + Chr1:101598472-101598491 None:intergenic 35.0%
!! TTTTAAAGGAGATGCAACTG+AGG - Chr1:101598835-101598854 MsG0180006227.01.T01:intron 35.0%
!!! ACTGTTTTTACAACAGGAGA+GGG + Chr1:101598248-101598267 None:intergenic 35.0%
!!! TACTGTTTTTACAACAGGAG+AGG + Chr1:101598249-101598268 None:intergenic 35.0%
AATAACCCGTTCTGATCCTA+AGG - Chr1:101599786-101599805 MsG0180006227.01.T01:CDS 40.0%
ACAACAGTTGCCATATCAAC+CGG - Chr1:101597776-101597795 MsG0180006227.01.T01:intron 40.0%
ACATGATGCCACCATGATTA+TGG - Chr1:101599575-101599594 MsG0180006227.01.T01:CDS 40.0%
ACCCAAGGTTCCATCTTTAT+TGG + Chr1:101599654-101599673 None:intergenic 40.0%
ACTTTGTCCTTGTACCAAGA+AGG + Chr1:101598424-101598443 None:intergenic 40.0%
AGGTCTGTCTTGTAGATCAA+TGG + Chr1:101598404-101598423 None:intergenic 40.0%
AGTATCTCACACTAGGGTAA+AGG + Chr1:101598666-101598685 None:intergenic 40.0%
AGTTAGTGACGTTTGGATTC+AGG - Chr1:101599538-101599557 MsG0180006227.01.T01:intron 40.0%
ATCCAAACGTCACTAACTTC+TGG + Chr1:101599536-101599555 None:intergenic 40.0%
ATCTACAAGACAGACCTTCT+TGG - Chr1:101598407-101598426 MsG0180006227.01.T01:intron 40.0%
ATCTACCTGTCATTGCATTG+AGG - Chr1:101599476-101599495 MsG0180006227.01.T01:intron 40.0%
ATGGCAGATATGGACATGAA+AGG + Chr1:101597674-101597693 None:intergenic 40.0%
ATGTTGAATCTGGAGAAAGG+GGG - Chr1:101598914-101598933 MsG0180006227.01.T01:intron 40.0%
ATTATGACATTACAGTGGGC+AGG - Chr1:101599346-101599365 MsG0180006227.01.T01:intron 40.0%
ATTTGGAGAGAACAGTCTCA+AGG + Chr1:101599111-101599130 None:intergenic 40.0%
CAAGCATACACTTGGACATT+AGG - Chr1:101599615-101599634 MsG0180006227.01.T01:CDS 40.0%
CAGATATGGACATGAAAGGA+AGG + Chr1:101597670-101597689 None:intergenic 40.0%
CCCCCTAAACAATGAAATGA+CGG + Chr1:101598946-101598965 None:intergenic 40.0%
CCGTCATTTCATTGTTTAGG+GGG - Chr1:101598943-101598962 MsG0180006227.01.T01:CDS 40.0%
CGAAGGTGAAGCTTATTATG+AGG + Chr1:101597713-101597732 None:intergenic 40.0%
CTAACTCCTTAGGATCAGAA+CGG + Chr1:101599795-101599814 None:intergenic 40.0%
GACCAATAAAGATGGAACCT+TGG - Chr1:101599649-101599668 MsG0180006227.01.T01:CDS 40.0%
GGATAAATAACCTTGTTGGG+TGG + Chr1:101598451-101598470 None:intergenic 40.0%
GGTCTGTCTTGTAGATCAAT+GGG + Chr1:101598403-101598422 None:intergenic 40.0%
GTATCTCACACTAGGGTAAA+GGG + Chr1:101598665-101598684 None:intergenic 40.0%
GTGGTTCCATCAAATAAGGA+AGG + Chr1:101597997-101598016 None:intergenic 40.0%
GTTAGTGACGTTTGGATTCA+GGG - Chr1:101599539-101599558 MsG0180006227.01.T01:intron 40.0%
GTTCCATCAAATAAGGAAGG+TGG + Chr1:101597994-101598013 None:intergenic 40.0%
GTTCTCTCCAAATATGATCG+CGG - Chr1:101599118-101599137 MsG0180006227.01.T01:intron 40.0%
TAACTCCTTAGGATCAGAAC+GGG + Chr1:101599794-101599813 None:intergenic 40.0%
TCACGTTACACTGCTTCATT+AGG - Chr1:101599070-101599089 MsG0180006227.01.T01:intron 40.0%
TGAGTTTGCCATAATCATGG+TGG + Chr1:101599586-101599605 None:intergenic 40.0%
TGTTACTGTGACTGAACTCA+AGG - Chr1:101598097-101598116 MsG0180006227.01.T01:intron 40.0%
! AGGTGAATAGTGGAAATGGA+TGG + Chr1:101597693-101597712 None:intergenic 40.0%
! ATCATGGTGGCATCATGTTT+TGG + Chr1:101599573-101599592 None:intergenic 40.0%
! ATGGATTACCCGTAACACTA+AGG - Chr1:101598158-101598177 MsG0180006227.01.T01:intron 40.0%
! CAGGGAATAAACAGCATTGA+AGG - Chr1:101599757-101599776 MsG0180006227.01.T01:CDS 40.0%
! GGTAACATATTTTGCCACAG+CGG - Chr1:101599508-101599527 MsG0180006227.01.T01:intron 40.0%
! GTAACATATTTTGCCACAGC+GGG - Chr1:101599509-101599528 MsG0180006227.01.T01:intron 40.0%
AACGACCTCAATGCAATGAC+AGG + Chr1:101599484-101599503 None:intergenic 45.0%
AAGCTACAAGAAGCGATTCC+TGG - Chr1:101599819-101599838 MsG0180006227.01.T01:CDS 45.0%
AGACAGACCTTCTTGGTACA+AGG - Chr1:101598414-101598433 MsG0180006227.01.T01:intron 45.0%
CAACAGTTGCCATATCAACC+GGG - Chr1:101597777-101597796 MsG0180006227.01.T01:intron 45.0%
CAAGAGATGGAACCTGGAAT+TGG + Chr1:101598570-101598589 None:intergenic 45.0%
CCATCAAATAAGGAAGGTGG+AGG + Chr1:101597991-101598010 None:intergenic 45.0%
CCTGGTGGTTCCATCAAATA+AGG + Chr1:101598001-101598020 None:intergenic 45.0%
CTGAATTGGCCAAGGAAGAA+AGG + Chr1:101599145-101599164 None:intergenic 45.0%
GAAAGGTCCGCGATCATATT+TGG + Chr1:101599128-101599147 None:intergenic 45.0%
GTATACGCACCAGACTGAAT+TGG + Chr1:101599159-101599178 None:intergenic 45.0%
GTCCAGAAGTTAGTGACGTT+TGG - Chr1:101599531-101599550 MsG0180006227.01.T01:intron 45.0%
GTGGAAATGGATGGCAGATA+TGG + Chr1:101597684-101597703 None:intergenic 45.0%
GTTTGTTCTCAGTCTCAGCA+AGG - Chr1:101597621-101597640 MsG0180006227.01.T01:intron 45.0%
TCAATCCATGCTGTCAGTCT+AGG + Chr1:101599372-101599391 None:intergenic 45.0%
TGAAGTTAGAGGAGAGAGTC+TGG - Chr1:101598600-101598619 MsG0180006227.01.T01:CDS 45.0%
TGGAGGTGAAGTGGAAGTAA+GGG + Chr1:101597974-101597993 None:intergenic 45.0%
TGTGTTCAAGAGATGGAACC+TGG + Chr1:101598576-101598595 None:intergenic 45.0%
! CCTCCACCTTCCTTATTTGA+TGG - Chr1:101597988-101598007 MsG0180006227.01.T01:intron 45.0%
! CCTTATTTGATGGAACCACC+AGG - Chr1:101597998-101598017 MsG0180006227.01.T01:intron 45.0%
! TAGACTGACAGCATGGATTG+AGG - Chr1:101599371-101599390 MsG0180006227.01.T01:intron 45.0%
AAAGGAGATGCAACTGAGGC+TGG - Chr1:101598839-101598858 MsG0180006227.01.T01:intron 50.0%
AATCCATACACGCTGGGCAT+AGG + Chr1:101598145-101598164 None:intergenic 50.0%
ACGGGTAATCCATACACGCT+GGG + Chr1:101598151-101598170 None:intergenic 50.0%
ATAAGCTTCACCTTCGACGG+CGG - Chr1:101597717-101597736 MsG0180006227.01.T01:intron 50.0%
ATCCATACACGCTGGGCATA+GGG + Chr1:101598144-101598163 None:intergenic 50.0%
CAAAGTCTACCCACCCAACA+AGG - Chr1:101598438-101598457 MsG0180006227.01.T01:intron 50.0%
CAACTGTTGTCACGCGAACA+TGG + Chr1:101597766-101597785 None:intergenic 50.0%
CAGAATTAAACCGCCGTCGA+AGG + Chr1:101597730-101597749 None:intergenic 50.0%
CTCACACTAGGGTAAAGGGA+GGG + Chr1:101598661-101598680 None:intergenic 50.0%
CTTCCTTGGCCAATTCAGTC+TGG - Chr1:101599147-101599166 MsG0180006227.01.T01:intron 50.0%
GGAGGTGAAGTGGAAGTAAG+GGG + Chr1:101597973-101597992 None:intergenic 50.0%
GTGGAGGTGAAGTGGAAGTA+AGG + Chr1:101597975-101597994 None:intergenic 50.0%
TAAGGAAGGTGGAGGTGAAG+TGG + Chr1:101597983-101598002 None:intergenic 50.0%
TACGGGTAATCCATACACGC+TGG + Chr1:101598152-101598171 None:intergenic 50.0%
TCTCACACTAGGGTAAAGGG+AGG + Chr1:101598662-101598681 None:intergenic 50.0%
! CTCAGCAAGGCCACAGATTT+TGG - Chr1:101597634-101597653 MsG0180006227.01.T01:intron 50.0%
! GCAGACATACCCGGTTGATA+TGG + Chr1:101597789-101597808 None:intergenic 50.0%
ACTAACTTCTGGACCCGCTG+TGG + Chr1:101599525-101599544 None:intergenic 55.0%
AGCAGGCAAGCAGACATACC+CGG + Chr1:101597798-101597817 None:intergenic 55.0%
GAAGTGGAAGTAAGGGGTGG+TGG + Chr1:101597967-101597986 None:intergenic 55.0%
GATCGCGGACCTTTCTTCCT+TGG - Chr1:101599133-101599152 MsG0180006227.01.T01:intron 55.0%
GCACCAGACTGAATTGGCCA+AGG + Chr1:101599153-101599172 None:intergenic 55.0%
GGTGAAGTGGAAGTAAGGGG+TGG + Chr1:101597970-101597989 None:intergenic 55.0%
GTATGTCTGCTTGCCTGCTG+AGG - Chr1:101597799-101597818 MsG0180006227.01.T01:intron 55.0%
GTTATGGAAGCAGGGACTGC+AGG - Chr1:101598360-101598379 MsG0180006227.01.T01:intron 55.0%
TCCATACACGCTGGGCATAG+GGG + Chr1:101598143-101598162 None:intergenic 55.0%
!! CTGGGCATAGGGGCATTTGT+AGG + Chr1:101598133-101598152 None:intergenic 55.0%
GAGCTCAGCTTAGCCTCAGC+AGG + Chr1:101597815-101597834 None:intergenic 60.0%
GCAGGCCTAGACTGACAGCA+TGG - Chr1:101599364-101599383 MsG0180006227.01.T01:intron 60.0%
GCCCCTATGCCCAGCGTGTA+TGG - Chr1:101598139-101598158 MsG0180006227.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 101597545 101599849 101597545 ID=MsG0180006227.01;Name=MsG0180006227.01
Chr1 mRNA 101597545 101599849 101597545 ID=MsG0180006227.01.T01;Parent=MsG0180006227.01;Name=MsG0180006227.01.T01;_AED=0.44;_eAED=0.47;_QI=0|0.83|0.57|1|0.83|0.71|7|0|285
Chr1 exon 101599556 101599849 101599556 ID=MsG0180006227.01.T01:exon:15159;Parent=MsG0180006227.01.T01
Chr1 exon 101598935 101599024 101598935 ID=MsG0180006227.01.T01:exon:15158;Parent=MsG0180006227.01.T01
Chr1 exon 101598719 101598817 101598719 ID=MsG0180006227.01.T01:exon:15157;Parent=MsG0180006227.01.T01
Chr1 exon 101598534 101598633 101598534 ID=MsG0180006227.01.T01:exon:15156;Parent=MsG0180006227.01.T01
Chr1 exon 101598226 101598302 101598226 ID=MsG0180006227.01.T01:exon:15155;Parent=MsG0180006227.01.T01
Chr1 exon 101598002 101598109 101598002 ID=MsG0180006227.01.T01:exon:15154;Parent=MsG0180006227.01.T01
Chr1 exon 101597545 101597634 101597545 ID=MsG0180006227.01.T01:exon:15153;Parent=MsG0180006227.01.T01
Chr1 CDS 101599556 101599849 101599556 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Chr1 CDS 101598935 101599024 101598935 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Chr1 CDS 101598719 101598817 101598719 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Chr1 CDS 101598534 101598633 101598534 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Chr1 CDS 101598226 101598302 101598226 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Chr1 CDS 101598002 101598109 101598002 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Chr1 CDS 101597545 101597634 101597545 ID=MsG0180006227.01.T01:cds;Parent=MsG0180006227.01.T01
Gene Sequence

>MsG0180006227.01.T01

ATGAATATTCATTGTCATCATCATATAGGAATTATGGCTATATCATCATCATCATCATCATTATTAACCAATAATAGTTTGTTCTCAGTCTCAGCAAGGCCACAGATTTTGGTTACTTCTTCCCTTCCTTTCATGTCCATATCTGCCATCCATTTCCACTATTCACCTCATAATAAGCTTCACCTTCGACGGCGGTTTAATTCTGTTACAAAATCGTGCCATGTTCGCGTGACAACAGTTGCCATATCAACCGGGTATGTCTGCTTGCCTGCTGAGGCTAAGCTGAGCTCAGTACAGGGACTGCAGGACAAGATACAGTTAGTTCCCATTGATCTACAAGACAGACCTTCTTGGTACAAGGACAAAGTCTACCCACCCAACAAGGTTCCATCTCTTGAACACAATAATGAAGTTAGAGGAGAGAGTCTGGATCTGATTAAATATATTGACACTCACTTTGAAGGACCCTCCCTTTACCCTAGTGGTCATGATGATAAGGAGTTTGCTGAAGAGTTGCTATCTTACACAGATACATTTTACAAGACAGTTGTTGCTTATTTTAAAGGAGATGCAACTGAGGCTGGCACTGCATTTGATTACCTTGAGACTGTTCTCTCCAAATATGATCGCGGACCTTTCTTCCTTGGCCAATTCAGTCTGGTGGATATAGCATATGCTCCTTTCATGGAAAGATTTCAACCGTTTTTAATGGATGTGAAAAATTATGACATTACAGTGGGCAGGCCTAGACTGACAGCATGGATTGAGGGAATAAACAGCATTGAAGGCTACAAAATAACCCGTTCTGATCCTAAGGAGTTAGTTGAAAGCTACAAGAAGCGATTCCTGGTATCATAA

Protein sequence

>MsG0180006227.01.T01

MNIHCHHHIGIMAISSSSSSLLTNNSLFSVSARPQILVTSSLPFMSISAIHFHYSPHNKLHLRRRFNSVTKSCHVRVTTVAISTGYVCLPAEAKLSSVQGLQDKIQLVPIDLQDRPSWYKDKVYPPNKVPSLEHNNEVRGESLDLIKYIDTHFEGPSLYPSGHDDKEFAEELLSYTDTFYKTVVAYFKGDATEAGTAFDYLETVLSKYDRGPFFLGQFSLVDIAYAPFMERFQPFLMDVKNYDITVGRPRLTAWIEGINSIEGYKITRSDPKELVESYKKRFLVS*