Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015491.01.T01 | KEH33629.1 | 96.296 | 108 | 4 | 0 | 72 | 179 | 39 | 146 | 4.15E-65 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015491.01.T01 | Q8LPI9 | 58.036 | 112 | 47 | 0 | 68 | 179 | 21 | 132 | 3.28E-38 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015491.01.T01 | A0A072UUV6 | 96.296 | 108 | 4 | 0 | 72 | 179 | 39 | 146 | 1.98e-65 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049068.01 | MsG0380015491.01 | 0.809440 | 1.890725e-50 | 1.110157e-47 |
| MsG0180000354.01 | MsG0380015491.01 | 0.802962 | 4.373587e-49 | 2.171170e-46 |
| MsG0180000355.01 | MsG0380015491.01 | 0.824154 | 9.411380e-54 | 8.269054e-51 |
| MsG0180003353.01 | MsG0380015491.01 | 0.842665 | 2.251238e-58 | 3.437359e-55 |
| MsG0180004192.01 | MsG0380015491.01 | 0.825730 | 3.997491e-54 | 3.674116e-51 |
| MsG0180004276.01 | MsG0380015491.01 | 0.818339 | 2.063903e-52 | 1.540781e-49 |
| MsG0180004448.01 | MsG0380015491.01 | 0.802028 | 6.813716e-49 | 3.302968e-46 |
| MsG0180006031.01 | MsG0380015491.01 | 0.805880 | 1.078343e-49 | 5.770205e-47 |
| MsG0380015491.01 | MsG0380016294.01 | 0.803094 | 4.107963e-49 | 2.046047e-46 |
| MsG0380015491.01 | MsG0380016671.01 | 0.808075 | 3.701435e-50 | 2.096233e-47 |
| MsG0380015491.01 | MsG0380017703.01 | 0.804079 | 2.565733e-49 | 1.310796e-46 |
| MsG0380015491.01 | MsG0480020690.01 | 0.827308 | 1.680453e-54 | 1.616291e-51 |
| MsG0380015491.01 | MsG0480023314.01 | 0.808762 | 2.641193e-50 | 1.522964e-47 |
| MsG0380015491.01 | MsG0680031010.01 | 0.802318 | 5.938406e-49 | 2.900259e-46 |
| MsG0380015491.01 | MsG0680033377.01 | 0.821357 | 4.215157e-53 | 3.421473e-50 |
| MsG0380015491.01 | MsG0780038351.01 | 0.821048 | 4.966119e-53 | 3.997078e-50 |
| MsG0380015491.01 | MsG0780038784.01 | 0.815087 | 1.106401e-51 | 7.554844e-49 |
| MsG0380015491.01 | MsG0780040284.01 | 0.804961 | 1.680194e-49 | 8.781238e-47 |
| MsG0380015491.01 | MsG0880041947.01 | 0.823104 | 1.657730e-53 | 1.414026e-50 |
| MsG0380015491.01 | MsG0880044392.01 | 0.810735 | 9.943103e-51 | 6.041372e-48 |
| MsG0380015491.01 | MsG0880046765.01 | 0.803229 | 3.851347e-49 | 1.924997e-46 |
| MsG0380015491.01 | MsG0880046867.01 | 0.819175 | 1.333406e-52 | 1.018589e-49 |
| MsG0380015491.01 | MsG0880047587.01 | 0.806175 | 9.343139e-50 | 5.037539e-47 |
| MsG0380015491.01 | MsG0880047703.01 | 0.811487 | 6.830648e-51 | 4.233812e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 39 | 146 | 5.02e-69 | 209 |
| MsG0380015491.01.T01 | MTR_3g070890 | 96.296 | 108 | 4 | 0 | 72 | 179 | 25 | 132 | 5.67e-68 | 208 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 25 | 132 | 6.98e-68 | 208 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 25 | 132 | 6.98e-68 | 208 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 55 | 162 | 7.79e-68 | 209 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 39 | 146 | 9.12e-68 | 208 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 94 | 201 | 1.02e-66 | 207 |
| MsG0380015491.01.T01 | MTR_3g449480 | 98.413 | 63 | 1 | 0 | 117 | 179 | 1 | 63 | 2.62e-34 | 124 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 25 | 132 | 5.14e-66 | 207 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 163 | 270 | 5.14e-66 | 207 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 55 | 162 | 6.12e-66 | 208 |
| MsG0380015491.01.T01 | MTR_3g449480 | 96.296 | 108 | 4 | 0 | 72 | 179 | 193 | 300 | 6.12e-66 | 208 |
| MsG0380015491.01.T01 | MTR_3g070890 | 98.413 | 63 | 1 | 0 | 117 | 179 | 1 | 63 | 8.00e-36 | 124 |
| MsG0380015491.01.T01 | MTR_3g449480 | 98.413 | 63 | 1 | 0 | 117 | 179 | 1 | 63 | 9.11e-36 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015491.01.T01 | AT1G29410 | 58.716 | 109 | 45 | 0 | 71 | 179 | 3 | 111 | 1.78e-39 | 133 |
| MsG0380015491.01.T01 | AT1G29410 | 58.036 | 112 | 47 | 0 | 68 | 179 | 21 | 132 | 1.84e-39 | 134 |
| MsG0380015491.01.T01 | AT1G29410 | 58.036 | 112 | 47 | 0 | 68 | 179 | 21 | 132 | 1.84e-39 | 134 |
| MsG0380015491.01.T01 | AT1G29410 | 59.259 | 108 | 44 | 0 | 72 | 179 | 4 | 111 | 3.13e-39 | 133 |
| MsG0380015491.01.T01 | AT1G29410 | 59.259 | 108 | 44 | 0 | 72 | 179 | 4 | 111 | 3.13e-39 | 133 |
| MsG0380015491.01.T01 | AT1G29410 | 58.036 | 112 | 47 | 0 | 68 | 179 | 21 | 132 | 3.35e-39 | 134 |
| MsG0380015491.01.T01 | AT1G29410 | 58.036 | 112 | 47 | 0 | 68 | 179 | 21 | 132 | 3.35e-39 | 134 |
| MsG0380015491.01.T01 | AT1G07780 | 55.833 | 120 | 52 | 1 | 61 | 179 | 13 | 132 | 8.74e-39 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 55.833 | 120 | 52 | 1 | 61 | 179 | 13 | 132 | 8.74e-39 | 132 |
| MsG0380015491.01.T01 | AT5G05590 | 55.833 | 120 | 52 | 1 | 61 | 179 | 13 | 132 | 9.74e-39 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 1.08e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 1.08e-38 | 132 |
| MsG0380015491.01.T01 | AT5G05590 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 1.42e-38 | 132 |
| MsG0380015491.01.T01 | AT5G05590 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 2.45e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.23e-38 | 132 |
| MsG0380015491.01.T01 | AT5G05590 | 59.259 | 108 | 44 | 0 | 72 | 179 | 25 | 132 | 5.95e-38 | 132 |
| MsG0380015491.01.T01 | AT1G07780 | 79.365 | 63 | 13 | 0 | 117 | 179 | 1 | 63 | 4.97e-29 | 107 |
Find 91 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGGTTCACAATAATTTA+AGG | 0.158039 | 3:-70950912 | None:intergenic |
| CATCAGGAATTGTGTTTAAA+AGG | 0.166323 | 3:-70950510 | None:intergenic |
| CAGCTTTCCATCTTTGATTC+AGG | 0.219001 | 3:+70950444 | MsG0380015491.01.T01:three_prime_UTR |
| TCTTCTATAGACTGCTTTCT+AGG | 0.247021 | 3:+70951006 | MsG0380015491.01.T01:three_prime_UTR |
| GAAGCTGGAGCAAACTTTAT+TGG | 0.273537 | 3:+70950151 | MsG0380015491.01.T01:CDS |
| GAGTTTAGTGGAGAATCTTA+TGG | 0.286198 | 3:+70949567 | MsG0380015491.01.T01:CDS |
| GTCCTCTGTTGATTGGGTTC+TGG | 0.318390 | 3:+70950539 | MsG0380015491.01.T01:three_prime_UTR |
| GCTGCTATGGCGGCCGAAGC+TGG | 0.347935 | 3:+70950136 | MsG0380015491.01.T01:CDS |
| ACTTGAAAAGATTAAGCCTT+TGG | 0.355111 | 3:+70950081 | MsG0380015491.01.T01:CDS |
| GGGGTGGGTGTGTTCGGATA+TGG | 0.356830 | 3:+70949599 | MsG0380015491.01.T01:CDS |
| TTTAGAGGGGTGGGTGTGTT+CGG | 0.357031 | 3:+70949593 | MsG0380015491.01.T01:CDS |
| GTTTGGACAATGCAGCTTCA+TGG | 0.372122 | 3:+70950407 | MsG0380015491.01.T01:intron |
| ATCAAGAATAGCTTCCTTCA+TGG | 0.376096 | 3:+70950859 | MsG0380015491.01.T01:three_prime_UTR |
| ATATGGTGGATTCGTGGAAT+TGG | 0.378729 | 3:+70949616 | MsG0380015491.01.T01:CDS |
| AGAGTGTCTGTTAAGATAGC+TGG | 0.378785 | 3:+70949678 | MsG0380015491.01.T01:CDS |
| TCTATAGAAGAAAGAACTTC+GGG | 0.402627 | 3:-70950994 | None:intergenic |
| CTATCTTAACAGACACTCTC+AGG | 0.403921 | 3:-70949674 | None:intergenic |
| AGTTTAGTGGAGAATCTTAT+GGG | 0.412549 | 3:+70949568 | MsG0380015491.01.T01:CDS |
| GAAGAGTGTCCTCTGTTGAT+TGG | 0.414601 | 3:+70950532 | MsG0380015491.01.T01:three_prime_UTR |
| AGAATCTTATGGGGATTTAG+AGG | 0.414722 | 3:+70949578 | MsG0380015491.01.T01:CDS |
| TTGCAAGAAACTTCATACTT+TGG | 0.418663 | 3:-70950019 | None:intergenic |
| ACAATGCAGCTTCATGGATC+TGG | 0.426005 | 3:+70950413 | MsG0380015491.01.T01:intron |
| CAGTGGTGAAGCATTCGATT+GGG | 0.429512 | 3:+70950680 | MsG0380015491.01.T01:intron |
| ATAATTTCTGTAGGTTTGAA+AGG | 0.437678 | 3:+70949962 | MsG0380015491.01.T01:intron |
| AATAAAGTTTGCTCCAGCTT+CGG | 0.441656 | 3:-70950149 | None:intergenic |
| GAGAATATATATTGTAATGC+AGG | 0.449671 | 3:+70951032 | MsG0380015491.01.T01:three_prime_UTR |
| AAGAGTGTCCTCTGTTGATT+GGG | 0.452309 | 3:+70950533 | MsG0380015491.01.T01:three_prime_UTR |
| AAGAACTTCGGGAATACAAA+TGG | 0.458317 | 3:-70950983 | None:intergenic |
| AGCTTCATGGATCTGGTTCG+CGG | 0.464460 | 3:+70950420 | MsG0380015491.01.T01:intron |
| TCATCCACAAATACTCCAAC+AGG | 0.465466 | 3:-70950262 | None:intergenic |
| AACAGAGGACACTCTTCATC+AGG | 0.474206 | 3:-70950526 | None:intergenic |
| ATTATTGTGAACCTCTAGAA+AGG | 0.482967 | 3:+70950918 | MsG0380015491.01.T01:three_prime_UTR |
| GTGGGTGTGTTCGGATATGG+TGG | 0.493398 | 3:+70949602 | MsG0380015491.01.T01:CDS |
| CGTGTGGGAAGAGAGTTTAG+TGG | 0.494665 | 3:+70949555 | MsG0380015491.01.T01:CDS |
| TGTTTCACTTTCTGTTGCAA+AGG | 0.498388 | 3:+70950204 | MsG0380015491.01.T01:CDS |
| TCCAATTCCACTCGTAAAAG+AGG | 0.500369 | 3:-70949649 | None:intergenic |
| GAATCTTATGGGGATTTAGA+GGG | 0.503398 | 3:+70949579 | MsG0380015491.01.T01:CDS |
| CAAATATGGTTGGCTCTGGC+AGG | 0.505013 | 3:+70950731 | MsG0380015491.01.T01:three_prime_UTR |
| AAAGCCTCACGAACATTCTC+AGG | 0.505756 | 3:-70950764 | None:intergenic |
| TCAAAAGTTGCAAGAGATTG+TGG | 0.507409 | 3:+70950232 | MsG0380015491.01.T01:CDS |
| GTCTATAGAAGAAAGAACTT+CGG | 0.508892 | 3:-70950995 | None:intergenic |
| TAGATAGTGCAAAGGGTGGC+AGG | 0.516369 | 3:+70950562 | MsG0380015491.01.T01:three_prime_UTR |
| GAGTGTCTGTTAAGATAGCT+GGG | 0.517565 | 3:+70949679 | MsG0380015491.01.T01:CDS |
| GAAGCAAATATGGTTGGCTC+TGG | 0.519277 | 3:+70950727 | MsG0380015491.01.T01:three_prime_UTR |
| AGAGCCTGTTGGAGTATTTG+TGG | 0.521575 | 3:+70950258 | MsG0380015491.01.T01:CDS |
| ATCAAATCTTGAGTTTGTGC+AGG | 0.523243 | 3:+70950317 | MsG0380015491.01.T01:three_prime_UTR |
| GCAGTGGTGAAGCATTCGAT+TGG | 0.523251 | 3:+70950679 | MsG0380015491.01.T01:intron |
| TTCTTGCAAACATACTGAGT+TGG | 0.523300 | 3:+70950033 | MsG0380015491.01.T01:CDS |
| AAATGTTTCATGTTCATCAA+AGG | 0.525170 | 3:+70950057 | MsG0380015491.01.T01:CDS |
| ATCAGCTAAAGATGCTGCTA+TGG | 0.526392 | 3:+70950123 | MsG0380015491.01.T01:CDS |
| TTACAAAATCACCTTTCTAG+AGG | 0.535181 | 3:-70950929 | None:intergenic |
| GCTTCATGGATCTGGTTCGC+GGG | 0.535795 | 3:+70950421 | MsG0380015491.01.T01:intron |
| TCCACTCGTAAAAGAGGCAA+GGG | 0.536949 | 3:-70949643 | None:intergenic |
| TTATGGGGATTTAGAGGGGT+GGG | 0.537509 | 3:+70949584 | MsG0380015491.01.T01:CDS |
| AAGCCTTTGGTTAAGATGTG+TGG | 0.545538 | 3:+70950094 | MsG0380015491.01.T01:CDS |
| AGAATATATATTGTAATGCA+GGG | 0.548226 | 3:+70951033 | MsG0380015491.01.T01:three_prime_UTR |
| GGCTCCCATCAGCATTTGCA+TGG | 0.555209 | 3:-70950489 | None:intergenic |
| CTACTGACATCCACTCCTCC+AGG | 0.559568 | 3:-70950800 | None:intergenic |
| GTTCTCCATGCAAATGCTGA+TGG | 0.559769 | 3:+70950484 | MsG0380015491.01.T01:three_prime_UTR |
| ATATGGTTGGCTCTGGCAGG+AGG | 0.565762 | 3:+70950734 | MsG0380015491.01.T01:three_prime_UTR |
| AAATTAGAAGCAAATATGGT+TGG | 0.569037 | 3:+70950721 | MsG0380015491.01.T01:three_prime_UTR |
| TTCCACTCGTAAAAGAGGCA+AGG | 0.570721 | 3:-70949644 | None:intergenic |
| AATCTTATGGGGATTTAGAG+GGG | 0.571868 | 3:+70949580 | MsG0380015491.01.T01:CDS |
| TAGTCTCAAACCTGGAGGAG+TGG | 0.574489 | 3:+70950790 | MsG0380015491.01.T01:three_prime_UTR |
| GATTGTGGAGCAGAGCCTGT+TGG | 0.580954 | 3:+70950247 | MsG0380015491.01.T01:CDS |
| GTTCGGATATGGTGGATTCG+TGG | 0.582221 | 3:+70949610 | MsG0380015491.01.T01:CDS |
| CTTATGGGGATTTAGAGGGG+TGG | 0.582827 | 3:+70949583 | MsG0380015491.01.T01:CDS |
| GGAGGCGAAAACTGTTCGTG+TGG | 0.593656 | 3:+70949539 | MsG0380015491.01.T01:CDS |
| AGAATGTACTGCATCCATGA+AGG | 0.601091 | 3:-70950873 | None:intergenic |
| TGCATCAGATGGCATTCAGA+AGG | 0.604378 | 3:+70950832 | MsG0380015491.01.T01:three_prime_UTR |
| TTCTCCATGCAAATGCTGAT+GGG | 0.608881 | 3:+70950485 | MsG0380015491.01.T01:three_prime_UTR |
| GTTCTGGTAGATAGTGCAAA+GGG | 0.610316 | 3:+70950555 | MsG0380015491.01.T01:three_prime_UTR |
| AGCGGCATATGTGCATCAGA+TGG | 0.611930 | 3:+70950821 | MsG0380015491.01.T01:three_prime_UTR |
| AGCTAAAGATGCTGCTATGG+CGG | 0.622801 | 3:+70950126 | MsG0380015491.01.T01:CDS |
| TATGGTTGGCTCTGGCAGGA+GGG | 0.623965 | 3:+70950735 | MsG0380015491.01.T01:three_prime_UTR |
| GCTTTGTCTAGTCTCAAACC+TGG | 0.631502 | 3:+70950782 | MsG0380015491.01.T01:three_prime_UTR |
| GGTTCTGGTAGATAGTGCAA+AGG | 0.632272 | 3:+70950554 | MsG0380015491.01.T01:three_prime_UTR |
| GAGGCGAAAACTGTTCGTGT+GGG | 0.632657 | 3:+70949540 | MsG0380015491.01.T01:CDS |
| GTTTAGTGGAGAATCTTATG+GGG | 0.634845 | 3:+70949569 | MsG0380015491.01.T01:CDS |
| ACTTTATTGGAATGATCGTG+TGG | 0.636931 | 3:+70950164 | MsG0380015491.01.T01:CDS |
| ATGCCACACATCTTAACCAA+AGG | 0.642355 | 3:-70950097 | None:intergenic |
| TATCTTAACAGACACTCTCA+GGG | 0.651737 | 3:-70949673 | None:intergenic |
| CAATCCTGAGAATGTTCGTG+AGG | 0.659098 | 3:+70950760 | MsG0380015491.01.T01:three_prime_UTR |
| CCACTCGTAAAAGAGGCAAG+GGG | 0.668551 | 3:-70949642 | None:intergenic |
| GGAGGAGTGGATGTCAGTAG+CGG | 0.679932 | 3:+70950803 | MsG0380015491.01.T01:three_prime_UTR |
| GAATATATATTGTAATGCAG+GGG | 0.680107 | 3:+70951034 | MsG0380015491.01.T01:three_prime_UTR |
| CACTCGTAAAAGAGGCAAGG+GGG | 0.687217 | 3:-70949641 | None:intergenic |
| CTGGTAGATAGTGCAAAGGG+TGG | 0.687302 | 3:+70950558 | MsG0380015491.01.T01:three_prime_UTR |
| TTGTCTAGTCTCAAACCTGG+AGG | 0.687383 | 3:+70950785 | MsG0380015491.01.T01:three_prime_UTR |
| TACCAGAACCCAATCAACAG+AGG | 0.711856 | 3:-70950541 | None:intergenic |
| AGTGTCTGTTAAGATAGCTG+GGG | 0.723904 | 3:+70949680 | MsG0380015491.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTGGTAATTTAAAT+CGG | - | Chr3:70950707-70950726 | None:intergenic | 10.0% |
| !! | ACTAAAAAAAAAAGATTGTT+TGG | - | Chr3:70950626-70950645 | None:intergenic | 15.0% |
| !! | AGATTAAATATAATTTCTGT+AGG | + | Chr3:70949953-70949972 | MsG0380015491.01.T01:intron | 15.0% |
| !!! | AATTTTTGGTAATTTAAATC+GGG | - | Chr3:70950706-70950725 | None:intergenic | 15.0% |
| !! | AGAATATATATTGTAATGCA+GGG | + | Chr3:70951033-70951052 | MsG0380015491.01.T01:three_prime_UTR | 20.0% |
| !!! | AATGGACTTAAAAAACAAAA+TGG | - | Chr3:70950968-70950987 | None:intergenic | 20.0% |
| ! | AAAACAAATTTCGAAGTACA+AGG | + | Chr3:70949919-70949938 | MsG0380015491.01.T01:intron | 25.0% |
| ! | AAAGAGACAAAACAAATACA+AGG | - | Chr3:70949833-70949852 | None:intergenic | 25.0% |
| ! | AAATGTTTCATGTTCATCAA+AGG | + | Chr3:70950057-70950076 | MsG0380015491.01.T01:CDS | 25.0% |
| ! | AAATTAGAAGCAAATATGGT+TGG | + | Chr3:70950721-70950740 | MsG0380015491.01.T01:three_prime_UTR | 25.0% |
| ! | AAGAGACAAAACAAATACAA+GGG | - | Chr3:70949832-70949851 | None:intergenic | 25.0% |
| ! | ATAATTTCTGTAGGTTTGAA+AGG | + | Chr3:70949962-70949981 | MsG0380015491.01.T01:intron | 25.0% |
| ! | CCAAAAATTAGAAGCAAATA+TGG | + | Chr3:70950717-70950736 | MsG0380015491.01.T01:three_prime_UTR | 25.0% |
| ! | GAATATATATTGTAATGCAG+GGG | + | Chr3:70951034-70951053 | MsG0380015491.01.T01:three_prime_UTR | 25.0% |
| ! | GAGAATATATATTGTAATGC+AGG | + | Chr3:70951032-70951051 | MsG0380015491.01.T01:three_prime_UTR | 25.0% |
| ! | TAGAGGTTCACAATAATTTA+AGG | - | Chr3:70950915-70950934 | None:intergenic | 25.0% |
| !! | CCATATTTGCTTCTAATTTT+TGG | - | Chr3:70950720-70950739 | None:intergenic | 25.0% |
| !!! | CAATTTTCTAGCATAAGATT+CGG | + | Chr3:70949995-70950014 | MsG0380015491.01.T01:CDS | 25.0% |
| ACTTGAAAAGATTAAGCCTT+TGG | + | Chr3:70950081-70950100 | MsG0380015491.01.T01:CDS | 30.0% | |
| AGTTTAGTGGAGAATCTTAT+GGG | + | Chr3:70949568-70949587 | MsG0380015491.01.T01:CDS | 30.0% | |
| CATCAGGAATTGTGTTTAAA+AGG | - | Chr3:70950513-70950532 | None:intergenic | 30.0% | |
| GTCTATAGAAGAAAGAACTT+CGG | - | Chr3:70950998-70951017 | None:intergenic | 30.0% | |
| TCTATAGAAGAAAGAACTTC+GGG | - | Chr3:70950997-70951016 | None:intergenic | 30.0% | |
| TGACATTGAAATCTTGAGTT+TGG | + | Chr3:70950390-70950409 | MsG0380015491.01.T01:intron | 30.0% | |
| TTAACCACCAAAATCATACA+AGG | - | Chr3:70949874-70949893 | None:intergenic | 30.0% | |
| TTACAAAATCACCTTTCTAG+AGG | - | Chr3:70950932-70950951 | None:intergenic | 30.0% | |
| TTGCAAGAAACTTCATACTT+TGG | - | Chr3:70950022-70950041 | None:intergenic | 30.0% | |
| ! | ATCATACAAGGAGTACAAAT+TGG | - | Chr3:70949862-70949881 | None:intergenic | 30.0% |
| ! | ATTATTGTGAACCTCTAGAA+AGG | + | Chr3:70950918-70950937 | MsG0380015491.01.T01:three_prime_UTR | 30.0% |
| ! | TCATACAAGGAGTACAAATT+GGG | - | Chr3:70949861-70949880 | None:intergenic | 30.0% |
| ! | TTGTACTCCTTGTATGATTT+TGG | + | Chr3:70949864-70949883 | MsG0380015491.01.T01:intron | 30.0% |
| AAGAACTTCGGGAATACAAA+TGG | - | Chr3:70950986-70951005 | None:intergenic | 35.0% | |
| AATCTTATGGGGATTTAGAG+GGG | + | Chr3:70949580-70949599 | MsG0380015491.01.T01:CDS | 35.0% | |
| ACTTTATTGGAATGATCGTG+TGG | + | Chr3:70950164-70950183 | MsG0380015491.01.T01:CDS | 35.0% | |
| AGAATCTTATGGGGATTTAG+AGG | + | Chr3:70949578-70949597 | MsG0380015491.01.T01:CDS | 35.0% | |
| ATCAAATCTTGAGTTTGTGC+AGG | + | Chr3:70950317-70950336 | MsG0380015491.01.T01:three_prime_UTR | 35.0% | |
| ATCAAGAATAGCTTCCTTCA+TGG | + | Chr3:70950859-70950878 | MsG0380015491.01.T01:three_prime_UTR | 35.0% | |
| CGTTGAACATGCATAAAAGT+CGG | - | Chr3:70950354-70950373 | None:intergenic | 35.0% | |
| GAATCTTATGGGGATTTAGA+GGG | + | Chr3:70949579-70949598 | MsG0380015491.01.T01:CDS | 35.0% | |
| GAGTTTAGTGGAGAATCTTA+TGG | + | Chr3:70949567-70949586 | MsG0380015491.01.T01:CDS | 35.0% | |
| GTTGAACATGCATAAAAGTC+GGG | - | Chr3:70950353-70950372 | None:intergenic | 35.0% | |
| GTTTAGTGGAGAATCTTATG+GGG | + | Chr3:70949569-70949588 | MsG0380015491.01.T01:CDS | 35.0% | |
| TATCTTAACAGACACTCTCA+GGG | - | Chr3:70949676-70949695 | None:intergenic | 35.0% | |
| TCAAAAGTTGCAAGAGATTG+TGG | + | Chr3:70950232-70950251 | MsG0380015491.01.T01:CDS | 35.0% | |
| TCTTCTATAGACTGCTTTCT+AGG | + | Chr3:70951006-70951025 | MsG0380015491.01.T01:three_prime_UTR | 35.0% | |
| TGTTTCACTTTCTGTTGCAA+AGG | + | Chr3:70950204-70950223 | MsG0380015491.01.T01:CDS | 35.0% | |
| TTCAACGACAGTTAAATGCT+TGG | + | Chr3:70950367-70950386 | MsG0380015491.01.T01:intron | 35.0% | |
| TTCTTGCAAACATACTGAGT+TGG | + | Chr3:70950033-70950052 | MsG0380015491.01.T01:CDS | 35.0% | |
| ! | AATAAAGTTTGCTCCAGCTT+CGG | - | Chr3:70950152-70950171 | None:intergenic | 35.0% |
| ! | CATACAAGGAGTACAAATTG+GGG | - | Chr3:70949860-70949879 | None:intergenic | 35.0% |
| ! | CGATTTTCCTGAATCAAAGA+TGG | - | Chr3:70950454-70950473 | None:intergenic | 35.0% |
| ! | GTGCTTGCATTTCTGTTTTA+GGG | + | Chr3:70949790-70949809 | MsG0380015491.01.T01:intron | 35.0% |
| ! | TACTCCTTGTATGATTTTGG+TGG | + | Chr3:70949867-70949886 | MsG0380015491.01.T01:intron | 35.0% |
| ! | TGTGCTTGCATTTCTGTTTT+AGG | + | Chr3:70949789-70949808 | MsG0380015491.01.T01:intron | 35.0% |
| ! | TGTTTTCTGTCTTCAGATGT+AGG | + | Chr3:70949729-70949748 | MsG0380015491.01.T01:CDS | 35.0% |
| !!! | GAAACAGAACGTTTTGAGTT+TGG | - | Chr3:70950190-70950209 | None:intergenic | 35.0% |
| AAGCCTTTGGTTAAGATGTG+TGG | + | Chr3:70950094-70950113 | MsG0380015491.01.T01:CDS | 40.0% | |
| AGAATGTACTGCATCCATGA+AGG | - | Chr3:70950876-70950895 | None:intergenic | 40.0% | |
| AGTGTCTGTTAAGATAGCTG+GGG | + | Chr3:70949680-70949699 | MsG0380015491.01.T01:CDS | 40.0% | |
| ATCAGCTAAAGATGCTGCTA+TGG | + | Chr3:70950123-70950142 | MsG0380015491.01.T01:CDS | 40.0% | |
| ATGCCACACATCTTAACCAA+AGG | - | Chr3:70950100-70950119 | None:intergenic | 40.0% | |
| CAGCTTTCCATCTTTGATTC+AGG | + | Chr3:70950444-70950463 | MsG0380015491.01.T01:three_prime_UTR | 40.0% | |
| CTATCTTAACAGACACTCTC+AGG | - | Chr3:70949677-70949696 | None:intergenic | 40.0% | |
| CTCATGAGATGTATTTGCAG+TGG | + | Chr3:70950663-70950682 | MsG0380015491.01.T01:intron | 40.0% | |
| GAAGCTGGAGCAAACTTTAT+TGG | + | Chr3:70950151-70950170 | MsG0380015491.01.T01:CDS | 40.0% | |
| GAGTGTCTGTTAAGATAGCT+GGG | + | Chr3:70949679-70949698 | MsG0380015491.01.T01:CDS | 40.0% | |
| GTTCTGGTAGATAGTGCAAA+GGG | + | Chr3:70950555-70950574 | MsG0380015491.01.T01:three_prime_UTR | 40.0% | |
| TCATCCACAAATACTCCAAC+AGG | - | Chr3:70950265-70950284 | None:intergenic | 40.0% | |
| TCCAATTCCACTCGTAAAAG+AGG | - | Chr3:70949652-70949671 | None:intergenic | 40.0% | |
| TTCTCCATGCAAATGCTGAT+GGG | + | Chr3:70950485-70950504 | MsG0380015491.01.T01:three_prime_UTR | 40.0% | |
| ! | AGAGTGTCTGTTAAGATAGC+TGG | + | Chr3:70949678-70949697 | MsG0380015491.01.T01:CDS | 40.0% |
| ! | TTTAGGGTCACTGGTATATC+AGG | + | Chr3:70949806-70949825 | MsG0380015491.01.T01:intron | 40.0% |
| !! | AAGAGTGTCCTCTGTTGATT+GGG | + | Chr3:70950533-70950552 | MsG0380015491.01.T01:three_prime_UTR | 40.0% |
| !! | ATATGGTGGATTCGTGGAAT+TGG | + | Chr3:70949616-70949635 | MsG0380015491.01.T01:CDS | 40.0% |
| !!! | CATTTCTGTTTTAGGGTCAC+TGG | + | Chr3:70949797-70949816 | MsG0380015491.01.T01:intron | 40.0% |
| AAAGCCTCACGAACATTCTC+AGG | - | Chr3:70950767-70950786 | None:intergenic | 45.0% | |
| AACAGAGGACACTCTTCATC+AGG | - | Chr3:70950529-70950548 | None:intergenic | 45.0% | |
| ACAATGCAGCTTCATGGATC+TGG | + | Chr3:70950413-70950432 | MsG0380015491.01.T01:intron | 45.0% | |
| AGCTAAAGATGCTGCTATGG+CGG | + | Chr3:70950126-70950145 | MsG0380015491.01.T01:CDS | 45.0% | |
| CAATCCTGAGAATGTTCGTG+AGG | + | Chr3:70950760-70950779 | MsG0380015491.01.T01:three_prime_UTR | 45.0% | |
| GCTTTGTCTAGTCTCAAACC+TGG | + | Chr3:70950782-70950801 | MsG0380015491.01.T01:three_prime_UTR | 45.0% | |
| GTTCTCCATGCAAATGCTGA+TGG | + | Chr3:70950484-70950503 | MsG0380015491.01.T01:three_prime_UTR | 45.0% | |
| GTTTGGACAATGCAGCTTCA+TGG | + | Chr3:70950407-70950426 | MsG0380015491.01.T01:intron | 45.0% | |
| TACCAGAACCCAATCAACAG+AGG | - | Chr3:70950544-70950563 | None:intergenic | 45.0% | |
| TCCACTCGTAAAAGAGGCAA+GGG | - | Chr3:70949646-70949665 | None:intergenic | 45.0% | |
| TGCATCAGATGGCATTCAGA+AGG | + | Chr3:70950832-70950851 | MsG0380015491.01.T01:three_prime_UTR | 45.0% | |
| TTATGGGGATTTAGAGGGGT+GGG | + | Chr3:70949584-70949603 | MsG0380015491.01.T01:CDS | 45.0% | |
| TTCCACTCGTAAAAGAGGCA+AGG | - | Chr3:70949647-70949666 | None:intergenic | 45.0% | |
| TTGTCTAGTCTCAAACCTGG+AGG | + | Chr3:70950785-70950804 | MsG0380015491.01.T01:three_prime_UTR | 45.0% | |
| ! | ACAAGGAGTACAAATTGGGG+AGG | - | Chr3:70949857-70949876 | None:intergenic | 45.0% |
| ! | AGAGCCTGTTGGAGTATTTG+TGG | + | Chr3:70950258-70950277 | MsG0380015491.01.T01:CDS | 45.0% |
| ! | CAAGGAGTACAAATTGGGGA+GGG | - | Chr3:70949856-70949875 | None:intergenic | 45.0% |
| ! | CAGTGGTGAAGCATTCGATT+GGG | + | Chr3:70950680-70950699 | MsG0380015491.01.T01:intron | 45.0% |
| ! | GAAGCAAATATGGTTGGCTC+TGG | + | Chr3:70950727-70950746 | MsG0380015491.01.T01:three_prime_UTR | 45.0% |
| ! | GCCTCTTTTACGAGTGGAAT+TGG | + | Chr3:70949648-70949667 | MsG0380015491.01.T01:CDS | 45.0% |
| ! | GGTTCTGGTAGATAGTGCAA+AGG | + | Chr3:70950554-70950573 | MsG0380015491.01.T01:three_prime_UTR | 45.0% |
| !! | GAAGAGTGTCCTCTGTTGAT+TGG | + | Chr3:70950532-70950551 | MsG0380015491.01.T01:three_prime_UTR | 45.0% |
| ACTGCTTCTGTCATGACAGC+AGG | + | Chr3:70949753-70949772 | MsG0380015491.01.T01:intron | 50.0% | |
| AGCGGCATATGTGCATCAGA+TGG | + | Chr3:70950821-70950840 | MsG0380015491.01.T01:three_prime_UTR | 50.0% | |
| CACTCGTAAAAGAGGCAAGG+GGG | - | Chr3:70949644-70949663 | None:intergenic | 50.0% | |
| CCACTCGTAAAAGAGGCAAG+GGG | - | Chr3:70949645-70949664 | None:intergenic | 50.0% | |
| CGTGTGGGAAGAGAGTTTAG+TGG | + | Chr3:70949555-70949574 | MsG0380015491.01.T01:CDS | 50.0% | |
| CTGCTTCTGTCATGACAGCA+GGG | + | Chr3:70949754-70949773 | MsG0380015491.01.T01:intron | 50.0% | |
| CTGGTAGATAGTGCAAAGGG+TGG | + | Chr3:70950558-70950577 | MsG0380015491.01.T01:three_prime_UTR | 50.0% | |
| CTTATGGGGATTTAGAGGGG+TGG | + | Chr3:70949583-70949602 | MsG0380015491.01.T01:CDS | 50.0% | |
| GAGGCGAAAACTGTTCGTGT+GGG | + | Chr3:70949540-70949559 | MsG0380015491.01.T01:CDS | 50.0% | |
| TAGATAGTGCAAAGGGTGGC+AGG | + | Chr3:70950562-70950581 | MsG0380015491.01.T01:three_prime_UTR | 50.0% | |
| TAGTCTCAAACCTGGAGGAG+TGG | + | Chr3:70950790-70950809 | MsG0380015491.01.T01:three_prime_UTR | 50.0% | |
| TTTAGAGGGGTGGGTGTGTT+CGG | + | Chr3:70949593-70949612 | MsG0380015491.01.T01:CDS | 50.0% | |
| ! | AGCTTCATGGATCTGGTTCG+CGG | + | Chr3:70950420-70950439 | MsG0380015491.01.T01:intron | 50.0% |
| ! | GCAGTGGTGAAGCATTCGAT+TGG | + | Chr3:70950679-70950698 | MsG0380015491.01.T01:intron | 50.0% |
| ! | GTCCTCTGTTGATTGGGTTC+TGG | + | Chr3:70950539-70950558 | MsG0380015491.01.T01:three_prime_UTR | 50.0% |
| !! | CAAATATGGTTGGCTCTGGC+AGG | + | Chr3:70950731-70950750 | MsG0380015491.01.T01:three_prime_UTR | 50.0% |
| !! | GATAGCTGGGGCAGTTTTAG+AGG | + | Chr3:70949692-70949711 | MsG0380015491.01.T01:CDS | 50.0% |
| !! | GTTCGGATATGGTGGATTCG+TGG | + | Chr3:70949610-70949629 | MsG0380015491.01.T01:CDS | 50.0% |
| !!! | GGGGCAGTTTTAGAGGTGTT+TGG | + | Chr3:70949699-70949718 | MsG0380015491.01.T01:CDS | 50.0% |
| CTACTGACATCCACTCCTCC+AGG | - | Chr3:70950803-70950822 | None:intergenic | 55.0% | |
| GATTGTGGAGCAGAGCCTGT+TGG | + | Chr3:70950247-70950266 | MsG0380015491.01.T01:CDS | 55.0% | |
| GGAGGAGTGGATGTCAGTAG+CGG | + | Chr3:70950803-70950822 | MsG0380015491.01.T01:three_prime_UTR | 55.0% | |
| GGAGGCGAAAACTGTTCGTG+TGG | + | Chr3:70949539-70949558 | MsG0380015491.01.T01:CDS | 55.0% | |
| GGCTCCCATCAGCATTTGCA+TGG | - | Chr3:70950492-70950511 | None:intergenic | 55.0% | |
| GTGGGTGTGTTCGGATATGG+TGG | + | Chr3:70949602-70949621 | MsG0380015491.01.T01:CDS | 55.0% | |
| ! | CCCCTTGCCTCTTTTACGAG+TGG | + | Chr3:70949642-70949661 | MsG0380015491.01.T01:CDS | 55.0% |
| ! | GCTTCATGGATCTGGTTCGC+GGG | + | Chr3:70950421-70950440 | MsG0380015491.01.T01:intron | 55.0% |
| !! | ATATGGTTGGCTCTGGCAGG+AGG | + | Chr3:70950734-70950753 | MsG0380015491.01.T01:three_prime_UTR | 55.0% |
| !! | TATGGTTGGCTCTGGCAGGA+GGG | + | Chr3:70950735-70950754 | MsG0380015491.01.T01:three_prime_UTR | 55.0% |
| GGGGTGGGTGTGTTCGGATA+TGG | + | Chr3:70949599-70949618 | MsG0380015491.01.T01:CDS | 60.0% | |
| GCTGCTATGGCGGCCGAAGC+TGG | + | Chr3:70950136-70950155 | MsG0380015491.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 70949537 | 70951103 | 70949537 | ID=MsG0380015491.01;Name=MsG0380015491.01 |
| Chr3 | mRNA | 70949537 | 70951103 | 70949537 | ID=MsG0380015491.01.T01;Parent=MsG0380015491.01;Name=MsG0380015491.01.T01;_AED=0.52;_eAED=0.52;_QI=0|0.66|0.75|1|0.33|0.25|4|618|180 |
| Chr3 | exon | 70949537 | 70949750 | 70949537 | ID=MsG0380015491.01.T01:exon:23699;Parent=MsG0380015491.01.T01 |
| Chr3 | exon | 70949975 | 70950338 | 70949975 | ID=MsG0380015491.01.T01:exon:23700;Parent=MsG0380015491.01.T01 |
| Chr3 | exon | 70950422 | 70950583 | 70950422 | ID=MsG0380015491.01.T01:exon:23701;Parent=MsG0380015491.01.T01 |
| Chr3 | exon | 70950683 | 70951103 | 70950683 | ID=MsG0380015491.01.T01:exon:23702;Parent=MsG0380015491.01.T01 |
| Chr3 | CDS | 70949537 | 70949750 | 70949537 | ID=MsG0380015491.01.T01:cds;Parent=MsG0380015491.01.T01 |
| Chr3 | CDS | 70949975 | 70950303 | 70949975 | ID=MsG0380015491.01.T01:cds;Parent=MsG0380015491.01.T01 |
| Chr3 | three_prime_UTR | 70950304 | 70950338 | 70950304 | ID=MsG0380015491.01.T01:three_prime_utr;Parent=MsG0380015491.01.T01 |
| Chr3 | three_prime_UTR | 70950422 | 70950583 | 70950422 | ID=MsG0380015491.01.T01:three_prime_utr;Parent=MsG0380015491.01.T01 |
| Chr3 | three_prime_UTR | 70950683 | 70951103 | 70950683 | ID=MsG0380015491.01.T01:three_prime_utr;Parent=MsG0380015491.01.T01 |
| Gene Sequence |
| Protein sequence |
