AlfalfaGEDB | MsG0380016498.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016498.01

KEGG: K14496
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016498.01.T01	XP_003602205.1	100	74	0	0	1	74	126	199	3.90E-45	153

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016498.01.T01	Q6EN42	81.818	66	12	0	1	66	139	204	7.40E-34	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016498.01.T01	G7J6S4	100.000	74	0	0	1	74	126	199	1.86e-45	153

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001663.01	MsG0380016498.01	0.809618	1.731197e-50	1.021395e-47
MsG0180002955.01	MsG0380016498.01	0.800081	1.703552e-48	7.860664e-46
MsG0180003510.01	MsG0380016498.01	0.803445	3.473741e-49	1.745952e-46
MsG0180003864.01	MsG0380016498.01	0.819225	1.298644e-52	9.934165e-50
MsG0180004996.01	MsG0380016498.01	0.818905	1.535546e-52	1.164430e-49
MsG0180005160.01	MsG0380016498.01	0.813505	2.474648e-51	1.619025e-48
MsG0180006016.01	MsG0380016498.01	0.816051	6.748194e-52	4.731668e-49
MsG0180006138.01	MsG0380016498.01	0.802375	5.779934e-49	2.826925e-46
MsG0280006356.01	MsG0380016498.01	0.810439	1.152002e-50	6.943983e-48
MsG0280006440.01	MsG0380016498.01	0.812288	4.571629e-51	2.895103e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016498.01.T01	MTR_3g090980	100.000	74	0	1	74	126	199	4.72e-49	153
MsG0380016498.01.T01	MTR_1g028380	86.567	67	9	1	67	124	190	3.31e-38	125
MsG0380016498.01.T01	MTR_8g027805	76.923	65	15	1	65	123	187	1.14e-32	111
MsG0380016498.01.T01	MTR_5g083270	60.000	45	18	9	53	159	203	1.78e-15	67.4
MsG0380016498.01.T01	MTR_3g071740	65.000	40	14	14	53	183	222	1.45e-14	65.5
MsG0380016498.01.T01	MTR_4g014460	43.396	53	30	2	54	156	208	6.38e-11	55.8

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016498.01.T01	AT5G53160	85.484	62	9	1	62	124	185	5.37e-32	109
MsG0380016498.01.T01	AT1G01360	77.419	62	14	1	62	126	187	1.58e-30	105
MsG0380016498.01.T01	AT4G01026	70.312	64	19	1	64	128	191	4.18e-28	100
MsG0380016498.01.T01	AT4G27920	77.358	53	12	1	53	120	172	1.67e-24	90.5
MsG0380016498.01.T01	AT2G40330	52.174	46	22	9	54	165	210	8.90e-13	60.8

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Find 26 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCATGCATCCGATCAAG+TGG	0.554489	3:+84328902	None:intergenic
ACCTCACTGAACCACTTGAT+CGG	0.518102	3:-84328913	MsG0380016498.01.T01:CDS
ATCAATAATTTCTGGGTGGA+GGG	0.509205	3:+84329084	None:intergenic
ATGCATGAGTTGTTGATAAG+TGG	0.595471	3:-84328890	MsG0380016498.01.T01:CDS
CAAATCACTTTCAGATGTCT+CGG	0.517164	3:-84328954	MsG0380016498.01.T01:CDS
CACAAAAGATTCAATTACCA+GGG	0.601688	3:+84329048	None:intergenic
CACTTTCAGATGTCTCGGAA+GGG	0.603305	3:-84328949	MsG0380016498.01.T01:CDS
CATCAATAATTTCTGGGTGG+AGG	0.490844	3:+84329083	None:intergenic
CCACAAAAGATTCAATTACC+AGG	0.481100	3:+84329047	None:intergenic
CTCCACCCAGAAATTATTGA+TGG	0.415182	3:-84329082	MsG0380016498.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACAAAAGATTCAATTACCA+GGG	+	Chr3:84328929-84328948	None:intergenic	30.0%
GTCTTCCATCAATAATTTCT+GGG	+	Chr3:84328900-84328919	None:intergenic	30.0%
CAAATCACTTTCAGATGTCT+CGG	-	Chr3:84329020-84329039	MsG0380016498.01.T01:CDS	35.0%
CCACAAAAGATTCAATTACC+AGG	+	Chr3:84328930-84328949	None:intergenic	35.0%
GAAATTATTGATGGAAGACC+AGG	-	Chr3:84328901-84328920	MsG0380016498.01.T01:CDS	35.0%
GGTCTTCCATCAATAATTTC+TGG	+	Chr3:84328901-84328920	None:intergenic	35.0%
CTCCACCCAGAAATTATTGA+TGG	-	Chr3:84328892-84328911	MsG0380016498.01.T01:CDS	40.0%
TTTGTGGTAGATGTACCAGA+GGG	-	Chr3:84328943-84328962	MsG0380016498.01.T01:CDS	40.0%
AACTCATGCATCCGATCAAG+TGG	+	Chr3:84329075-84329094	None:intergenic	45.0%
ACCTCACTGAACCACTTGAT+CGG	-	Chr3:84329061-84329080	MsG0380016498.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	84328886	84329110	84328886	ID=MsG0380016498.01;Name=MsG0380016498.01
Chr3	mRNA	84328886	84329110	84328886	ID=MsG0380016498.01.T01;Parent=MsG0380016498.01;Name=MsG0380016498.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|74
Chr3	exon	84328886	84329110	84328886	ID=MsG0380016498.01.T01:exon:14261;Parent=MsG0380016498.01.T01
Chr3	CDS	84328886	84329110	84328886	ID=MsG0380016498.01.T01:cds;Parent=MsG0380016498.01.T01

Gene Sequence	>MsG0380016498.01.T01 ATGTCCCTCCACCCAGAAATTATTGATGGAAGACCAGGAACCCTGGTAATTGAATCTTTTGTGGTAGATGTACCAGAGGGGAATACCAAGGATGAGACCTGCTACTTCGTTGAAGCCTTAATTAAGTGCAATCTCAAATCACTTTCAGATGTCTCGGAAGGGCATGCTGTGCAGGACCTCACTGAACCACTTGATCGGATGCATGAGTTGTTGATAAGTGGCTGA
Protein sequence	>MsG0380016498.01.T01 MSLHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLSDVSEGHAVQDLTEPLDRMHELLISG*