AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005160.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005160.01.T01 MTR_1g093770 96.463 311 11 0 28 338 2 312 0.0 618
MsG0180005160.01.T01 MTR_2g070740 30.000 200 121 5 37 231 8 193 6.27e-21 92.0
MsG0180005160.01.T01 MTR_8g008730 30.000 200 121 5 37 231 8 193 9.23e-21 90.1
MsG0180005160.01.T01 MTR_8g008730 30.000 200 121 5 37 231 8 193 2.12e-20 90.5
MsG0180005160.01.T01 MTR_3g101280 70.370 54 11 1 58 111 51 99 7.92e-20 86.7
MsG0180005160.01.T01 MTR_1g073720 29.000 200 121 6 37 231 8 191 1.41e-17 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005160.01.T01 AT1G25682 72.258 310 83 2 28 337 2 308 5.95e-166 465
MsG0180005160.01.T01 AT1G25682 72.258 310 83 2 28 337 2 308 5.95e-166 465
MsG0180005160.01.T01 AT1G25988 60.396 101 40 0 106 206 4 104 3.30e-35 127
MsG0180005160.01.T01 AT1G17130 28.502 207 129 5 37 238 8 200 1.11e-18 85.9
MsG0180005160.01.T01 AT1G17130 27.570 214 129 5 37 238 8 207 8.51e-18 83.6
MsG0180005160.01.T01 AT3G43250 33.945 109 58 3 37 143 8 104 1.95e-13 69.7

Find 79 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGGTATCTTGATTATA+AGG 0.255625 1:+87806377 MsG0180005160.01.T01:CDS
GACGGGCAATCCAGGGAATA+TGG 0.258001 1:-87808335 None:intergenic
ATCACATACTCACAGTTCTT+TGG 0.264942 1:-87807536 None:intergenic
CTTCCATCACACATTATATA+TGG 0.293729 1:-87808690 None:intergenic
TGGTGTTCAAGGCGGTAAAA+TGG 0.307792 1:-87807934 None:intergenic
ACCTGGCTTGGATCCCATTC+TGG 0.311079 1:-87806215 None:intergenic
TTGAGATGCCTTATAATATA+TGG 0.313340 1:+87806851 MsG0180005160.01.T01:CDS
CCTCCGCACCATATATTATA+AGG 0.317386 1:-87806859 None:intergenic
TTTCTAGTGTCTTGCATTCA+TGG 0.318374 1:-87808506 None:intergenic
GAGAGCAAGGAAGTTAGATC+AGG 0.349867 1:+87806360 MsG0180005160.01.T01:CDS
TCTACAGCATGCAGCTTTCA+TGG 0.350388 1:-87807489 None:intergenic
AAGCGCAGCATCTAGCCTTT+TGG 0.353767 1:+87808417 MsG0180005160.01.T01:CDS
TACATAGAAATTGCTTGATA+AGG 0.361493 1:+87808591 MsG0180005160.01.T01:three_prime_UTR
CAAGTAACATACTCTAAGTT+TGG 0.373219 1:-87808067 None:intergenic
AATCTTCCTCCTGGTGTTCA+AGG 0.398061 1:-87807945 None:intergenic
GCATCTAGGAAAAGGGGCCT+TGG 0.407781 1:+87808199 MsG0180005160.01.T01:CDS
ATGGATGAGACGGGCAATCC+AGG 0.417753 1:-87808343 None:intergenic
GGCACAGTCTTCCGAATGTC+TGG 0.424093 1:-87808025 None:intergenic
GGTTCTCTGAACAAGTTTCA+TGG 0.426891 1:+87806319 MsG0180005160.01.T01:CDS
GCTTCTTCTCTGCATTGAAC+CGG 0.428388 1:-87806909 None:intergenic
TTGATGGATGATCAAATTGA+TGG 0.431044 1:+87805503 MsG0180005160.01.T01:CDS
GTTCTTTGGATCAGTTTGAA+TGG 0.451321 1:-87807522 None:intergenic
CATCTAGGAAAAGGGGCCTT+GGG 0.455684 1:+87808200 MsG0180005160.01.T01:CDS
TGTTCTGTCAAGCAGGCAAA+AGG 0.461856 1:+87808477 MsG0180005160.01.T01:CDS
CGCTGGAGACGCACAAGCAC+TGG 0.464581 1:-87807991 None:intergenic
AAGAAGCTGCATCTAGGAAA+AGG 0.464590 1:+87808191 MsG0180005160.01.T01:CDS
AGAAGCTGCATCTAGGAAAA+GGG 0.469824 1:+87808192 MsG0180005160.01.T01:CDS
CTATGATTGCAAAGGGTGTC+CGG 0.472676 1:+87806890 MsG0180005160.01.T01:CDS
ATGCAGAGAAGAAGCAAGTT+GGG 0.475460 1:+87806917 MsG0180005160.01.T01:CDS
GCACGCAAATATACCTGGCT+TGG 0.482555 1:-87806227 None:intergenic
AATGTCTGATGCCAGACATT+CGG 0.487929 1:+87808014 MsG0180005160.01.T01:CDS
GTCTGGCATCAGACATTCGC+TGG 0.492170 1:-87808008 None:intergenic
ATGTTGATTGTGGAGGAGCT+TGG 0.493950 1:+87805533 MsG0180005160.01.T01:CDS
ACGGGCAATCCAGGGAATAT+GGG 0.497967 1:-87808334 None:intergenic
GCAGCATCTTGTTCTGAAGC+TGG 0.501516 1:-87808235 None:intergenic
GAAAGCTGCATGCTGTAGAC+AGG 0.504885 1:+87807493 MsG0180005160.01.T01:CDS
AATGCTGCTCCCATATTCCC+TGG 0.508968 1:+87808325 MsG0180005160.01.T01:CDS
CTGAAGAAGAAGCTGCATCT+AGG 0.513065 1:+87808185 MsG0180005160.01.T01:CDS
TCCAGAATGGGATCCAAGCC+AGG 0.514395 1:+87806214 MsG0180005160.01.T01:CDS
CAGCCTTCTCTTACCAGACA+TGG 0.522667 1:-87808362 None:intergenic
GTTTATACCCTCCAGCCAAA+AGG 0.523272 1:-87808432 None:intergenic
TTGCCCGTCTCATCCATGTC+TGG 0.524578 1:+87808349 MsG0180005160.01.T01:CDS
GAGGGTATAAACCGTCATCT+TGG 0.526453 1:+87808443 MsG0180005160.01.T01:CDS
TGCAATTCTATGATTGCAAA+GGG 0.527726 1:+87806883 MsG0180005160.01.T01:CDS
TTCGAGTTACCTGCTGATGA+AGG 0.528478 1:+87807614 MsG0180005160.01.T01:CDS
AGAATTCAACTTTGTCGAAG+TGG 0.530862 1:-87808723 None:intergenic
AATGCAGAGAAGAAGCAAGT+TGG 0.531409 1:+87806916 MsG0180005160.01.T01:CDS
TAAACCGTCATCTTGGTCAC+AGG 0.534179 1:+87808450 MsG0180005160.01.T01:CDS
AGGGAGCTGTTCTGTCAAGC+AGG 0.536545 1:+87808470 MsG0180005160.01.T01:CDS
CTTCCTTGCTCTCTCTCTCA+AGG 0.536908 1:-87806350 None:intergenic
TCATGCACACCTTCATCAGC+AGG 0.543966 1:-87807623 None:intergenic
AAATTTGTGTTACAGAGAGA+GGG 0.546667 1:+87807899 MsG0180005160.01.T01:intron
AACATACTCTAAGTTTGGCC+CGG 0.552541 1:-87808062 None:intergenic
CATGTCTGGTAAGAGAAGGC+TGG 0.552595 1:+87808363 MsG0180005160.01.T01:CDS
TGGATGAGACGGGCAATCCA+GGG 0.561142 1:-87808342 None:intergenic
GAACTTCACTTTCGCTGCTG+CGG 0.562222 1:-87808257 None:intergenic
GTTCTGTCAAGCAGGCAAAA+GGG 0.575210 1:+87808478 MsG0180005160.01.T01:CDS
ATGCCTTGAGAGAGAGAGCA+AGG 0.581873 1:+87806347 MsG0180005160.01.T01:CDS
ATGCAATTCTATGATTGCAA+AGG 0.583657 1:+87806882 MsG0180005160.01.T01:CDS
ATCTGCTCTAGCAGCTGCAA+GGG 0.592187 1:-87806177 None:intergenic
TATCTGCTCTAGCAGCTGCA+AGG 0.592633 1:-87806178 None:intergenic
CTTACCAGACATGGATGAGA+CGG 0.598118 1:-87808353 None:intergenic
CATCCATGTCTGGTAAGAGA+AGG 0.598795 1:+87808359 MsG0180005160.01.T01:CDS
TTACCAGACATGGATGAGAC+GGG 0.611020 1:-87808352 None:intergenic
AGAGCAAGGAAGTTAGATCA+GGG 0.613858 1:+87806361 MsG0180005160.01.T01:CDS
GAAGCTGCATCTAGGAAAAG+GGG 0.615335 1:+87808193 MsG0180005160.01.T01:CDS
AAGCCATATATAATGTGTGA+TGG 0.616717 1:+87808687 MsG0180005160.01.T01:three_prime_UTR
GTGAGTATGTGATCATCAGT+GGG 0.620162 1:+87807546 MsG0180005160.01.T01:CDS
CCTTATAATATATGGTGCGG+AGG 0.625854 1:+87806859 MsG0180005160.01.T01:CDS
GCTCCCTGTGACCAAGATGA+CGG 0.632091 1:-87808454 None:intergenic
ATGCCTTATAATATATGGTG+CGG 0.650909 1:+87806856 MsG0180005160.01.T01:CDS
CTGGAAGCAGTCGAATCCCA+AGG 0.652032 1:-87808216 None:intergenic
AAACCGTCATCTTGGTCACA+GGG 0.655559 1:+87808451 MsG0180005160.01.T01:CDS
TGTGAGTATGTGATCATCAG+TGG 0.657354 1:+87807545 MsG0180005160.01.T01:CDS
TGGCTTGGATCCCATTCTGG+AGG 0.660594 1:-87806212 None:intergenic
CTTCCTCCTGGTGTTCAAGG+CGG 0.672392 1:-87807942 None:intergenic
TTACCGCCTTGAACACCAGG+AGG 0.712713 1:+87807939 MsG0180005160.01.T01:CDS
TGGGAATTACTACTCTACGA+AGG 0.715974 1:+87806936 MsG0180005160.01.T01:CDS
TGAGTATGTGATCATCAGTG+GGG 0.814262 1:+87807547 MsG0180005160.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCATTTTTTTAAACAA+AGG + Chr1:87807017-87807036 MsG0180005160.01.T01:intron 10.0%
!! ATTAGATAATATGGAATAAA+AGG - Chr1:87806815-87806834 None:intergenic 15.0%
!!! TATATGTACATATATTGATT+TGG + Chr1:87807673-87807692 MsG0180005160.01.T01:intron 15.0%
!!! TTAAATTCTAGTTTTGATTA+TGG + Chr1:87805479-87805498 MsG0180005160.01.T01:CDS 15.0%
!! ACACTTGAAAATAATATGTA+AGG - Chr1:87807247-87807266 None:intergenic 20.0%
!! AGATTTGAAAAAAAAGAAAC+AGG + Chr1:87807963-87807982 MsG0180005160.01.T01:CDS 20.0%
!!! AAAAGCATTAAACTTGTTAA+AGG - Chr1:87807802-87807821 None:intergenic 20.0%
!!! AAAGCATTAAACTTGTTAAA+GGG - Chr1:87807801-87807820 None:intergenic 20.0%
!!! AAGTGTTTAATTTCTATTGT+CGG + Chr1:87806031-87806050 MsG0180005160.01.T01:intron 20.0%
!!! ATCATAATGGATCATTAAAT+TGG - Chr1:87806636-87806655 None:intergenic 20.0%
!!! ATCTTTTAAAACCATGTATT+GGG - Chr1:87805802-87805821 None:intergenic 20.0%
!!! ATTTTATAAGTTATACGACA+TGG + Chr1:87805700-87805719 MsG0180005160.01.T01:intron 20.0%
!!! CTTTATAATGCAGTTTTTTT+GGG + Chr1:87808616-87808635 MsG0180005160.01.T01:three_prime_UTR 20.0%
!!! TATCTTTTAAAACCATGTAT+TGG - Chr1:87805803-87805822 None:intergenic 20.0%
!!! TCTTTATAATGCAGTTTTTT+TGG + Chr1:87808615-87808634 MsG0180005160.01.T01:three_prime_UTR 20.0%
!!! TTTTAAATCCATTTTTCCTA+TGG - Chr1:87805659-87805678 None:intergenic 20.0%
! AAGTTGAAAAAAGTTTGTCA+TGG - Chr1:87807151-87807170 None:intergenic 25.0%
! AATCACTATTAGACTATAAC+TGG - Chr1:87807214-87807233 None:intergenic 25.0%
! ACATGTAATATGAGTACTTA+TGG + Chr1:87805996-87806015 MsG0180005160.01.T01:intron 25.0%
! AGAATGGTCATTAGATAATA+TGG - Chr1:87806824-87806843 None:intergenic 25.0%
! ATATGCTAAATGAAACAATG+TGG + Chr1:87806514-87806533 MsG0180005160.01.T01:intron 25.0%
! ATATTACAGTATTTCACCAT+AGG + Chr1:87805640-87805659 MsG0180005160.01.T01:intron 25.0%
! CAAATGCAAGTTAAGTTTAT+TGG - Chr1:87806139-87806158 None:intergenic 25.0%
! CTAGTAAGTTTGACAAAAAT+AGG + Chr1:87808281-87808300 MsG0180005160.01.T01:CDS 25.0%
! TAAAACTGATACACAAGTAT+GGG + Chr1:87805674-87805693 MsG0180005160.01.T01:intron 25.0%
! TAAAATAAAATAGCCCAGAT+TGG - Chr1:87806789-87806808 None:intergenic 25.0%
! TAAGTTTGACAAAAATAGGA+AGG + Chr1:87808285-87808304 MsG0180005160.01.T01:CDS 25.0%
! TAATCATTAACGTGTTTATC+TGG + Chr1:87807443-87807462 MsG0180005160.01.T01:intron 25.0%
! TAATGAGTTATGAAGACAAA+TGG - Chr1:87806453-87806472 None:intergenic 25.0%
! TACAGAGAATAAAGGATTTA+CGG - Chr1:87806494-87806513 None:intergenic 25.0%
! TACATAGAAATTGCTTGATA+AGG + Chr1:87808591-87808610 MsG0180005160.01.T01:three_prime_UTR 25.0%
! TAGCATATTACAGAGAATAA+AGG - Chr1:87806502-87806521 None:intergenic 25.0%
! TTAAAACTGATACACAAGTA+TGG + Chr1:87805673-87805692 MsG0180005160.01.T01:intron 25.0%
! TTGAGATGCCTTATAATATA+TGG + Chr1:87806851-87806870 MsG0180005160.01.T01:CDS 25.0%
!! AGATTATGTTGCTTGATTAT+GGG + Chr1:87805822-87805841 MsG0180005160.01.T01:intron 25.0%
!! TAACTTGTATGTATTTGATG+TGG + Chr1:87806094-87806113 MsG0180005160.01.T01:intron 25.0%
!! TAGATTATGTTGCTTGATTA+TGG + Chr1:87805821-87805840 MsG0180005160.01.T01:intron 25.0%
!!! CTTTTGACTCTAAGAAAATA+GGG - Chr1:87808155-87808174 None:intergenic 25.0%
!!! GAAGCATCTAATGTTTATTT+TGG + Chr1:87806977-87806996 MsG0180005160.01.T01:intron 25.0%
!!! TAGTTTTGATTATGGTTTGA+TGG + Chr1:87805487-87805506 MsG0180005160.01.T01:CDS 25.0%
!!! TATGAAGACAAATGGATTAA+TGG - Chr1:87806445-87806464 None:intergenic 25.0%
!!! TCATTTTTTTAAACAAAGGC+AGG + Chr1:87807021-87807040 MsG0180005160.01.T01:intron 25.0%
!!! TCTTTTAAAACCATGTATTG+GGG - Chr1:87805801-87805820 None:intergenic 25.0%
!!! TCTTTTGACTCTAAGAAAAT+AGG - Chr1:87808156-87808175 None:intergenic 25.0%
AAAACTGATACACAAGTATG+GGG + Chr1:87805675-87805694 MsG0180005160.01.T01:intron 30.0%
AAAATTTGTGTTACAGAGAG+AGG + Chr1:87807898-87807917 MsG0180005160.01.T01:intron 30.0%
AAATTTGTGTTACAGAGAGA+GGG + Chr1:87807899-87807918 MsG0180005160.01.T01:intron 30.0%
AACTCATTTCTGACTATTCT+AGG - Chr1:87806557-87806576 None:intergenic 30.0%
AAGCCATATATAATGTGTGA+TGG + Chr1:87808687-87808706 MsG0180005160.01.T01:three_prime_UTR 30.0%
AATGATCCATTATGATCGAA+AGG + Chr1:87806640-87806659 MsG0180005160.01.T01:intron 30.0%
ATGAGTACTTATGGATATCT+TGG + Chr1:87806005-87806024 MsG0180005160.01.T01:intron 30.0%
ATGATCCATTATGATCGAAA+GGG + Chr1:87806641-87806660 MsG0180005160.01.T01:intron 30.0%
ATGCAATTCTATGATTGCAA+AGG + Chr1:87806882-87806901 MsG0180005160.01.T01:CDS 30.0%
ATGCCTTATAATATATGGTG+CGG + Chr1:87806856-87806875 MsG0180005160.01.T01:CDS 30.0%
ATGCTATTGCATCTTTCAAT+TGG + Chr1:87807723-87807742 MsG0180005160.01.T01:intron 30.0%
CAAGTAACATACTCTAAGTT+TGG - Chr1:87808070-87808089 None:intergenic 30.0%
CTTCCATCACACATTATATA+TGG - Chr1:87808693-87808712 None:intergenic 30.0%
GTATTTCACCATAGGAAAAA+TGG + Chr1:87805648-87805667 MsG0180005160.01.T01:intron 30.0%
TATCTAATGACCATTCTTTC+AGG + Chr1:87806827-87806846 MsG0180005160.01.T01:intron 30.0%
TCACAACAACAAAGAATTCA+TGG + Chr1:87805741-87805760 MsG0180005160.01.T01:intron 30.0%
TCTAAGAAAATAGGGAAAAG+GGG - Chr1:87808147-87808166 None:intergenic 30.0%
TGCAATTCTATGATTGCAAA+GGG + Chr1:87806883-87806902 MsG0180005160.01.T01:CDS 30.0%
TTAATGCACTGCATTATCTT+GGG + Chr1:87807382-87807401 MsG0180005160.01.T01:intron 30.0%
TTGAACCACACTATTTAGAT+TGG - Chr1:87807409-87807428 None:intergenic 30.0%
! ACTCTAAGAAAATAGGGAAA+AGG - Chr1:87808149-87808168 None:intergenic 30.0%
! ATCAGGGTATCTTGATTATA+AGG + Chr1:87806377-87806396 MsG0180005160.01.T01:CDS 30.0%
! ATTGAAGGAAAGAGCTTTTA+TGG - Chr1:87805777-87805796 None:intergenic 30.0%
! CTAGTAGATTTTAAATGCCT+GGG + Chr1:87805918-87805937 MsG0180005160.01.T01:intron 30.0%
! CTCTAAGAAAATAGGGAAAA+GGG - Chr1:87808148-87808167 None:intergenic 30.0%
! GATTATGTTGCTTGATTATG+GGG + Chr1:87805823-87805842 MsG0180005160.01.T01:intron 30.0%
! TCTAGTAGATTTTAAATGCC+TGG + Chr1:87805917-87805936 MsG0180005160.01.T01:intron 30.0%
! TTGAAGGAAAGAGCTTTTAT+GGG - Chr1:87805776-87805795 None:intergenic 30.0%
! TTGATGGATGATCAAATTGA+TGG + Chr1:87805503-87805522 MsG0180005160.01.T01:CDS 30.0%
!! ATGTTTTATGTTGATTGTGG+AGG + Chr1:87805526-87805545 MsG0180005160.01.T01:CDS 30.0%
!! TGGATGTTTTATGTTGATTG+TGG + Chr1:87805523-87805542 MsG0180005160.01.T01:CDS 30.0%
!! TTTTGGGAGCTTAATATAGA+TGG + Chr1:87808632-87808651 MsG0180005160.01.T01:three_prime_UTR 30.0%
!!! TTGTCAGTCACTTTTGATTT+TGG + Chr1:87808550-87808569 MsG0180005160.01.T01:three_prime_UTR 30.0%
!!! TTTTTTTCAAATCTTCCTCC+TGG - Chr1:87807957-87807976 None:intergenic 30.0%
AAAATAGCCCAGATTGGAAA+AGG - Chr1:87806783-87806802 None:intergenic 35.0%
AAGTTTGCCTTTGAACCTTT+GGG + Chr1:87807747-87807766 MsG0180005160.01.T01:intron 35.0%
AATAGCATGTCTCAAACTAC+TGG - Chr1:87807711-87807730 None:intergenic 35.0%
AATCCATAGAAAACAGCTGT+TGG - Chr1:87807774-87807793 None:intergenic 35.0%
ACAAAAATAGGAAGGACAAG+CGG + Chr1:87808293-87808312 MsG0180005160.01.T01:CDS 35.0%
ACACTATATTTCCTCCTTTC+AGG + Chr1:87806297-87806316 MsG0180005160.01.T01:intron 35.0%
ACTATCCCTTTCGATCATAA+TGG - Chr1:87806649-87806668 None:intergenic 35.0%
AGGGATAGTCTACTTTATGT+AGG + Chr1:87806660-87806679 MsG0180005160.01.T01:intron 35.0%
ATAGCATGTCTCAAACTACT+GGG - Chr1:87807710-87807729 None:intergenic 35.0%
ATCACATACTCACAGTTCTT+TGG - Chr1:87807539-87807558 None:intergenic 35.0%
CACTATATTTCCTCCTTTCA+GGG + Chr1:87806298-87806317 MsG0180005160.01.T01:intron 35.0%
CTAAGAAAATAGGGAAAAGG+GGG - Chr1:87808146-87808165 None:intergenic 35.0%
GAGAATAAAGGATTTACGGT+AGG - Chr1:87806490-87806509 None:intergenic 35.0%
GGATAGTCTACTTTATGTAG+GGG + Chr1:87806662-87806681 MsG0180005160.01.T01:intron 35.0%
GGGATAGTCTACTTTATGTA+GGG + Chr1:87806661-87806680 MsG0180005160.01.T01:intron 35.0%
GTGCCCTAAATAAAAATCTC+CGG + Chr1:87808043-87808062 MsG0180005160.01.T01:CDS 35.0%
GTTAATGCACTGCATTATCT+TGG + Chr1:87807381-87807400 MsG0180005160.01.T01:intron 35.0%
GTTCTTTGGATCAGTTTGAA+TGG - Chr1:87807525-87807544 None:intergenic 35.0%
TATCTGGATACATGCAGATA+TGG + Chr1:87807459-87807478 MsG0180005160.01.T01:intron 35.0%
TGCCCTAAATAAAAATCTCC+GGG + Chr1:87808044-87808063 MsG0180005160.01.T01:CDS 35.0%
! ACTTTTACTTTCCTCCAGAA+TGG + Chr1:87806201-87806220 MsG0180005160.01.T01:CDS 35.0%
! CTTTTACTTTCCTCCAGAAT+GGG + Chr1:87806202-87806221 MsG0180005160.01.T01:CDS 35.0%
! TAGATTTTAAATGCCTGGGT+GGG + Chr1:87805922-87805941 MsG0180005160.01.T01:intron 35.0%
! TAGTAACTGATTCACTATCG+TGG + Chr1:87807851-87807870 MsG0180005160.01.T01:intron 35.0%
! TTTCTAGTGTCTTGCATTCA+TGG - Chr1:87808509-87808528 None:intergenic 35.0%
!! AACTGAGGATTTTGATGTTG+AGG + Chr1:87807580-87807599 MsG0180005160.01.T01:CDS 35.0%
!! GAGAGTGTTGAAGAATTTGA+CGG + Chr1:87805859-87805878 MsG0180005160.01.T01:intron 35.0%
AACATACTCTAAGTTTGGCC+CGG - Chr1:87808065-87808084 None:intergenic 40.0%
AAGAAGCTGCATCTAGGAAA+AGG + Chr1:87808191-87808210 MsG0180005160.01.T01:CDS 40.0%
AATGCAGAGAAGAAGCAAGT+TGG + Chr1:87806916-87806935 MsG0180005160.01.T01:CDS 40.0%
AATGTCTGATGCCAGACATT+CGG + Chr1:87808014-87808033 MsG0180005160.01.T01:CDS 40.0%
AGAAGCTGCATCTAGGAAAA+GGG + Chr1:87808192-87808211 MsG0180005160.01.T01:CDS 40.0%
AGAGCAAGGAAGTTAGATCA+GGG + Chr1:87806361-87806380 MsG0180005160.01.T01:CDS 40.0%
ATGCAGAGAAGAAGCAAGTT+GGG + Chr1:87806917-87806936 MsG0180005160.01.T01:CDS 40.0%
ATTCGTGGGATGTGTAATTC+AGG + Chr1:87805561-87805580 MsG0180005160.01.T01:intron 40.0%
CAAAAATAGGAAGGACAAGC+GGG + Chr1:87808294-87808313 MsG0180005160.01.T01:CDS 40.0%
CAAGTTTGCCTTTGAACCTT+TGG + Chr1:87807746-87807765 MsG0180005160.01.T01:intron 40.0%
CCACATAGAGACAAAGATCA+GGG - Chr1:87806058-87806077 None:intergenic 40.0%
CCTCCGCACCATATATTATA+AGG - Chr1:87806862-87806881 None:intergenic 40.0%
CCTTATAATATATGGTGCGG+AGG + Chr1:87806859-87806878 MsG0180005160.01.T01:CDS 40.0%
CTACTTACTGGCGTGTTATA+TGG + Chr1:87806687-87806706 MsG0180005160.01.T01:intron 40.0%
GCATCTCAAACCTGAAAGAA+TGG - Chr1:87806840-87806859 None:intergenic 40.0%
GGTAGTAATACACACACTCA+CGG + Chr1:87805880-87805899 MsG0180005160.01.T01:intron 40.0%
GGTTCTCTGAACAAGTTTCA+TGG + Chr1:87806319-87806338 MsG0180005160.01.T01:CDS 40.0%
GTGAGTATGTGATCATCAGT+GGG + Chr1:87807546-87807565 MsG0180005160.01.T01:CDS 40.0%
TAGCATGTCTCAAACTACTG+GGG - Chr1:87807709-87807728 None:intergenic 40.0%
TCCACATAGAGACAAAGATC+AGG - Chr1:87806059-87806078 None:intergenic 40.0%
TGAGTATGTGATCATCAGTG+GGG + Chr1:87807547-87807566 MsG0180005160.01.T01:CDS 40.0%
TGGGAATTACTACTCTACGA+AGG + Chr1:87806936-87806955 MsG0180005160.01.T01:CDS 40.0%
TGGGACCAATCTAAATAGTG+TGG + Chr1:87807401-87807420 MsG0180005160.01.T01:intron 40.0%
TGTGAGTATGTGATCATCAG+TGG + Chr1:87807545-87807564 MsG0180005160.01.T01:CDS 40.0%
TTAAGCACAGTTGCAATGCT+AGG - Chr1:87807828-87807847 None:intergenic 40.0%
TTGTTGCACGCAAATATACC+TGG - Chr1:87806235-87806254 None:intergenic 40.0%
! ACAAGTTTGTTCACATGAGC+AGG - Chr1:87807057-87807076 None:intergenic 40.0%
! AGATTTTAAATGCCTGGGTG+GGG + Chr1:87805923-87805942 MsG0180005160.01.T01:intron 40.0%
! GTAGATTTTAAATGCCTGGG+TGG + Chr1:87805921-87805940 MsG0180005160.01.T01:intron 40.0%
!! AGAGCTTTTATGGGTTGTGA+TGG - Chr1:87805767-87805786 None:intergenic 40.0%
!! GGCCCGGAGATTTTTATTTA+GGG - Chr1:87808049-87808068 None:intergenic 40.0%
!! TGGCCCGGAGATTTTTATTT+AGG - Chr1:87808050-87808069 None:intergenic 40.0%
AAAACAGCTGTTGGACCCAA+AGG - Chr1:87807765-87807784 None:intergenic 45.0%
AAACCGTCATCTTGGTCACA+GGG + Chr1:87808451-87808470 MsG0180005160.01.T01:CDS 45.0%
AATCTTCCTCCTGGTGTTCA+AGG - Chr1:87807948-87807967 None:intergenic 45.0%
AGGAGCTTGGAGTAAATTCG+TGG + Chr1:87805546-87805565 MsG0180005160.01.T01:intron 45.0%
ATAGCCCAGATTGGAAAAGG+AGG - Chr1:87806780-87806799 None:intergenic 45.0%
CATCCATGTCTGGTAAGAGA+AGG + Chr1:87808359-87808378 MsG0180005160.01.T01:CDS 45.0%
CCCTGATCTTTGTCTCTATG+TGG + Chr1:87806055-87806074 MsG0180005160.01.T01:intron 45.0%
CTGAAGAAGAAGCTGCATCT+AGG + Chr1:87808185-87808204 MsG0180005160.01.T01:CDS 45.0%
CTTACCAGACATGGATGAGA+CGG - Chr1:87808356-87808375 None:intergenic 45.0%
CTTGTTCAGAGAACCCTGAA+AGG - Chr1:87806314-87806333 None:intergenic 45.0%
GAAGCTGCATCTAGGAAAAG+GGG + Chr1:87808193-87808212 MsG0180005160.01.T01:CDS 45.0%
GAGAGCAAGGAAGTTAGATC+AGG + Chr1:87806360-87806379 MsG0180005160.01.T01:CDS 45.0%
GCTTCTTCTCTGCATTGAAC+CGG - Chr1:87806912-87806931 None:intergenic 45.0%
GGAGCTTGGAGTAAATTCGT+GGG + Chr1:87805547-87805566 MsG0180005160.01.T01:intron 45.0%
GTTCTGTCAAGCAGGCAAAA+GGG + Chr1:87808478-87808497 MsG0180005160.01.T01:CDS 45.0%
GTTTATACCCTCCAGCCAAA+AGG - Chr1:87808435-87808454 None:intergenic 45.0%
TAAACCGTCATCTTGGTCAC+AGG + Chr1:87808450-87808469 MsG0180005160.01.T01:CDS 45.0%
TCCTTCAATGCCCCAATACA+TGG + Chr1:87805788-87805807 MsG0180005160.01.T01:intron 45.0%
TCTACAGCATGCAGCTTTCA+TGG - Chr1:87807492-87807511 None:intergenic 45.0%
TGGGGCTCAGAAAAAAACTG+AGG + Chr1:87807565-87807584 MsG0180005160.01.T01:CDS 45.0%
TGGTGTTCAAGGCGGTAAAA+TGG - Chr1:87807937-87807956 None:intergenic 45.0%
TGTTCTGTCAAGCAGGCAAA+AGG + Chr1:87808477-87808496 MsG0180005160.01.T01:CDS 45.0%
TGTTGGACCCAAAGGTTCAA+AGG - Chr1:87807757-87807776 None:intergenic 45.0%
TTACCAGACATGGATGAGAC+GGG - Chr1:87808355-87808374 None:intergenic 45.0%
TTGCTTGATTATGGGGTGAG+TGG + Chr1:87805830-87805849 MsG0180005160.01.T01:intron 45.0%
! ATGTTGATTGTGGAGGAGCT+TGG + Chr1:87805533-87805552 MsG0180005160.01.T01:CDS 45.0%
! ATTTTACCGCCTTGAACACC+AGG + Chr1:87807936-87807955 MsG0180005160.01.T01:CDS 45.0%
! GAGGGTATAAACCGTCATCT+TGG + Chr1:87808443-87808462 MsG0180005160.01.T01:CDS 45.0%
! TTCGAGTTACCTGCTGATGA+AGG + Chr1:87807614-87807633 MsG0180005160.01.T01:CDS 45.0%
!! ACCATGTATTGGGGCATTGA+AGG - Chr1:87805792-87805811 None:intergenic 45.0%
!! CTATGATTGCAAAGGGTGTC+CGG + Chr1:87806890-87806909 MsG0180005160.01.T01:CDS 45.0%
!! GGTCCAACAGCTGTTTTCTA+TGG + Chr1:87807768-87807787 MsG0180005160.01.T01:intron 45.0%
!! TATGTAGGGGTGCTACTTAC+TGG + Chr1:87806675-87806694 MsG0180005160.01.T01:intron 45.0%
AATGCTGCTCCCATATTCCC+TGG + Chr1:87808325-87808344 MsG0180005160.01.T01:CDS 50.0%
ACGGGCAATCCAGGGAATAT+GGG - Chr1:87808337-87808356 None:intergenic 50.0%
ATCTGCTCTAGCAGCTGCAA+GGG - Chr1:87806180-87806199 None:intergenic 50.0%
ATGCCTTGAGAGAGAGAGCA+AGG + Chr1:87806347-87806366 MsG0180005160.01.T01:CDS 50.0%
CAGCCTTCTCTTACCAGACA+TGG - Chr1:87808365-87808384 None:intergenic 50.0%
CATCTAGGAAAAGGGGCCTT+GGG + Chr1:87808200-87808219 MsG0180005160.01.T01:CDS 50.0%
CATGTCTGGTAAGAGAAGGC+TGG + Chr1:87808363-87808382 MsG0180005160.01.T01:CDS 50.0%
CTTCCTTGCTCTCTCTCTCA+AGG - Chr1:87806353-87806372 None:intergenic 50.0%
CTTGAAAGAGCTGAACCAGC+TGG + Chr1:87806754-87806773 MsG0180005160.01.T01:intron 50.0%
GAAAGCTGCATGCTGTAGAC+AGG + Chr1:87807493-87807512 MsG0180005160.01.T01:CDS 50.0%
GAACTTCACTTTCGCTGCTG+CGG - Chr1:87808260-87808279 None:intergenic 50.0%
GCACGCAAATATACCTGGCT+TGG - Chr1:87806230-87806249 None:intergenic 50.0%
GTTCAGAGAACCCTGAAAGG+AGG - Chr1:87806311-87806330 None:intergenic 50.0%
TATCTGCTCTAGCAGCTGCA+AGG - Chr1:87806181-87806200 None:intergenic 50.0%
TCATGCACACCTTCATCAGC+AGG - Chr1:87807626-87807645 None:intergenic 50.0%
TTTAAATGCCTGGGTGGGGA+GGG + Chr1:87805927-87805946 MsG0180005160.01.T01:intron 50.0%
! CTGGCCTCCTTTTCCAATCT+GGG + Chr1:87806773-87806792 MsG0180005160.01.T01:intron 50.0%
! TTTTAAATGCCTGGGTGGGG+AGG + Chr1:87805926-87805945 MsG0180005160.01.T01:intron 50.0%
!! AAGCGCAGCATCTAGCCTTT+TGG + Chr1:87808417-87808436 MsG0180005160.01.T01:CDS 50.0%
!! CATCTAGCCTTTTGGCTGGA+GGG + Chr1:87808425-87808444 MsG0180005160.01.T01:CDS 50.0%
!! GCAGCATCTTGTTCTGAAGC+TGG - Chr1:87808238-87808257 None:intergenic 50.0%
AGGGAGCTGTTCTGTCAAGC+AGG + Chr1:87808470-87808489 MsG0180005160.01.T01:CDS 55.0%
ATGGATGAGACGGGCAATCC+AGG - Chr1:87808346-87808365 None:intergenic 55.0%
ATTATGGGGTGAGTGGCGCT+AGG + Chr1:87805837-87805856 MsG0180005160.01.T01:intron 55.0%
CTGGAAGCAGTCGAATCCCA+AGG - Chr1:87808219-87808238 None:intergenic 55.0%
CTTCCTCCTGGTGTTCAAGG+CGG - Chr1:87807945-87807964 None:intergenic 55.0%
GACGGGCAATCCAGGGAATA+TGG - Chr1:87808338-87808357 None:intergenic 55.0%
GATTGGAAAAGGAGGCCAGC+TGG - Chr1:87806772-87806791 None:intergenic 55.0%
GCAGCTACTAAGCGACAGTG+TGG + Chr1:87806419-87806438 MsG0180005160.01.T01:intron 55.0%
GCATCTAGGAAAAGGGGCCT+TGG + Chr1:87808199-87808218 MsG0180005160.01.T01:CDS 55.0%
GCTCCCTGTGACCAAGATGA+CGG - Chr1:87808457-87808476 None:intergenic 55.0%
GGCACAGTCTTCCGAATGTC+TGG - Chr1:87808028-87808047 None:intergenic 55.0%
GTCTGGCATCAGACATTCGC+TGG - Chr1:87808011-87808030 None:intergenic 55.0%
TCCAGAATGGGATCCAAGCC+AGG + Chr1:87806214-87806233 MsG0180005160.01.T01:CDS 55.0%
TGGATGAGACGGGCAATCCA+GGG - Chr1:87808345-87808364 None:intergenic 55.0%
TTACCGCCTTGAACACCAGG+AGG + Chr1:87807939-87807958 MsG0180005160.01.T01:CDS 55.0%
TTGCCCGTCTCATCCATGTC+TGG + Chr1:87808349-87808368 MsG0180005160.01.T01:CDS 55.0%
! TGGCTTGGATCCCATTCTGG+AGG - Chr1:87806215-87806234 None:intergenic 55.0%
!! ACCTGGCTTGGATCCCATTC+TGG - Chr1:87806218-87806237 None:intergenic 55.0%
!! GCAGCATCTAGCCTTTTGGC+TGG + Chr1:87808421-87808440 MsG0180005160.01.T01:CDS 55.0%
!! GCATCTAGCCTTTTGGCTGG+AGG + Chr1:87808424-87808443 MsG0180005160.01.T01:CDS 55.0%
!! GCTGGCCTCCTTTTCCAATC+TGG + Chr1:87806772-87806791 MsG0180005160.01.T01:intron 55.0%
CGCTGGAGACGCACAAGCAC+TGG - Chr1:87807994-87808013 None:intergenic 65.0%
GCCTGGGTGGGGAGGGAGTA+GGG + Chr1:87805934-87805953 MsG0180005160.01.T01:intron 70.0%
TCCCTACTCCCTCCCCACCC+AGG - Chr1:87805938-87805957 None:intergenic 70.0%
TGCCTGGGTGGGGAGGGAGT+AGG + Chr1:87805933-87805952 MsG0180005160.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87805476 87808730 87805476 ID=MsG0180005160.01;Name=MsG0180005160.01
Chr1 mRNA 87805476 87808730 87805476 ID=MsG0180005160.01.T01;Parent=MsG0180005160.01;Name=MsG0180005160.01.T01;_AED=0.40;_eAED=0.44;_QI=0|0.83|0.85|1|1|1|7|205|338
Chr1 exon 87805476 87805556 87805476 ID=MsG0180005160.01.T01:exon:14294;Parent=MsG0180005160.01.T01
Chr1 exon 87806173 87806235 87806173 ID=MsG0180005160.01.T01:exon:14295;Parent=MsG0180005160.01.T01
Chr1 exon 87806319 87806398 87806319 ID=MsG0180005160.01.T01:exon:14296;Parent=MsG0180005160.01.T01
Chr1 exon 87806849 87806957 87806849 ID=MsG0180005160.01.T01:exon:14297;Parent=MsG0180005160.01.T01
Chr1 exon 87807476 87807635 87807476 ID=MsG0180005160.01.T01:exon:14298;Parent=MsG0180005160.01.T01
Chr1 exon 87807914 87808077 87807914 ID=MsG0180005160.01.T01:exon:14299;Parent=MsG0180005160.01.T01
Chr1 exon 87808166 87808730 87808166 ID=MsG0180005160.01.T01:exon:14300;Parent=MsG0180005160.01.T01
Chr1 CDS 87805476 87805556 87805476 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 CDS 87806173 87806235 87806173 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 CDS 87806319 87806398 87806319 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 CDS 87806849 87806957 87806849 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 CDS 87807476 87807635 87807476 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 CDS 87807914 87808077 87807914 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 CDS 87808166 87808525 87808166 ID=MsG0180005160.01.T01:cds;Parent=MsG0180005160.01.T01
Chr1 three_prime_UTR 87808526 87808730 87808526 ID=MsG0180005160.01.T01:three_prime_utr;Parent=MsG0180005160.01.T01
Gene Sequence

>MsG0180005160.01.T01

ATGTTAAATTCTAGTTTTGATTATGGTTTGATGGATGATCAAATTGATGGATGTTTTATGTTGATTGTGGAGGAGCTTGGATCGTCCCTTGCAGCTGCTAGAGCAGATAACTTTTACTTTCCTCCAGAATGGGATCCAAGCCAGGGTTCTCTGAACAAGTTTCATGGTCAACATGCCTTGAGAGAGAGAGCAAGGAAGTTAGATCAGGGTATCTTGATTATAAGGTTTGAGATGCCTTATAATATATGGTGCGGAGGATGCAATTCTATGATTGCAAAGGGTGTCCGGTTCAATGCAGAGAAGAAGCAAGTTGGGAATTACTACTCTACGAAGATATGGAGCTTTACCATGAAAGCTGCATGCTGTAGACAGGAGATCACCATTCAAACTGATCCAAAGAACTGTGAGTATGTGATCATCAGTGGGGCTCAGAAAAAAACTGAGGATTTTGATGTTGAGGATGCAGAAACTTTCGAGTTACCTGCTGATGAAGAGAGAGGGAAGCTTGCTGATCCATTTTACCGCCTTGAACACCAGGAGGAAGATTTGAAAAAAAAGAAACAGGCTGAACCAGTGCTTGTGCGTCTCCAGCGAATGTCTGATGCCAGACATTCGGAAGACTGTGCCCTAAATAAAAATCTCCGGGCCAAACTTAGAAGTCAAAAGAAAAGAGTTGCTGAAGAAGAAGCTGCATCTAGGAAAAGGGGCCTTGGGATTCGACTGCTTCCAGCTTCAGAACAAGATGCTGCCGCAGCAGCGAAAGTGAAGTTCTCTAGTAAGTTTGACAAAAATAGGAAGGACAAGCGGGCATTGATCAATGCTGCTCCCATATTCCCTGGATTGCCCGTCTCATCCATGTCTGGTAAGAGAAGGCTGGAGCTAGAGTCTAAAAGAAGAAAAATTTCTGCAAGCGCAGCATCTAGCCTTTTGGCTGGAGGGTATAAACCGTCATCTTGGTCACAGGGAGCTGTTCTGTCAAGCAGGCAAAAGGGAGCTTCCATGAATGCAAGACACTAG

Protein sequence

>MsG0180005160.01.T01

MLNSSFDYGLMDDQIDGCFMLIVEELGSSLAAARADNFYFPPEWDPSQGSLNKFHGQHALRERARKLDQGILIIRFEMPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEITIQTDPKNCEYVIISGAQKKTEDFDVEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKQAEPVLVRLQRMSDARHSEDCALNKNLRAKLRSQKKRVAEEEAASRKRGLGIRLLPASEQDAAAAAKVKFSSKFDKNRKDKRALINAAPIFPGLPVSSMSGKRRLELESKRRKISASAASSLLAGGYKPSSWSQGAVLSSRQKGASMNARH*