AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046733.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046733.01.T01 MTR_4g113730 98.008 251 5 0 70 320 99 349 0.0 503
MsG0880046733.01.T01 MTR_7g059110 44.915 118 59 1 132 243 137 254 8.66e-28 111
MsG0880046733.01.T01 MTR_7g059110 44.915 118 59 1 132 243 174 291 1.10e-27 111
MsG0880046733.01.T01 MTR_8g085870 45.000 120 65 1 130 249 126 244 9.37e-27 109
MsG0880046733.01.T01 MTR_4g094420 46.667 90 48 0 136 225 132 221 1.30e-22 97.1
MsG0880046733.01.T01 MTR_3g073240 43.810 105 59 0 138 242 128 232 1.52e-21 93.2
MsG0880046733.01.T01 MTR_1g009790 38.043 92 57 0 131 222 93 184 5.05e-18 83.2
MsG0880046733.01.T01 MTR_1g009790 38.043 92 57 0 131 222 93 184 5.54e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046733.01.T01 AT3G25910 54.082 196 66 6 121 299 158 346 6.63e-56 186
MsG0880046733.01.T01 AT3G24740 53.333 90 42 0 136 225 136 225 2.46e-26 107
MsG0880046733.01.T01 AT3G24740 53.333 90 42 0 136 225 136 225 2.46e-26 107
MsG0880046733.01.T01 AT3G24740 53.333 90 42 0 136 225 136 225 2.46e-26 107
MsG0880046733.01.T01 AT3G24740 53.333 90 42 0 136 225 136 225 2.46e-26 107
MsG0880046733.01.T01 AT3G24740 53.333 90 42 0 136 225 136 225 2.46e-26 107
MsG0880046733.01.T01 AT3G24740 53.333 90 42 0 136 225 136 225 2.46e-26 107
MsG0880046733.01.T01 AT1G68140 44.318 88 49 0 138 225 118 205 3.72e-21 92.0
MsG0880046733.01.T01 AT1G68140 44.318 88 49 0 138 225 118 205 5.10e-21 92.4
MsG0880046733.01.T01 AT1G68140 44.318 88 49 0 138 225 118 205 5.10e-21 92.4
MsG0880046733.01.T01 AT1G68140 44.318 88 49 0 138 225 118 205 5.10e-21 92.4
MsG0880046733.01.T01 AT4G31410 47.253 91 48 0 133 223 95 185 1.83e-20 90.1
MsG0880046733.01.T01 AT4G31410 47.253 91 48 0 133 223 95 185 1.83e-20 90.1
MsG0880046733.01.T01 AT4G31410 47.253 91 48 0 133 223 95 185 1.83e-20 90.1
MsG0880046733.01.T01 AT4G08460 43.678 87 49 0 138 224 105 191 6.51e-20 88.2
MsG0880046733.01.T01 AT4G08460 43.678 87 49 0 138 224 105 191 6.51e-20 88.2
MsG0880046733.01.T01 AT4G08460 43.678 87 49 0 138 224 105 191 6.51e-20 88.2
MsG0880046733.01.T01 AT4G08460 43.678 87 49 0 138 224 105 191 6.51e-20 88.2
MsG0880046733.01.T01 AT2G26050 46.988 83 43 1 138 219 72 154 3.07e-16 77.0
MsG0880046733.01.T01 AT1G80220 45.238 84 45 1 138 220 101 184 1.53e-14 72.8
MsG0880046733.01.T01 AT1G77770 42.553 94 54 0 131 224 78 171 1.58e-14 72.8
MsG0880046733.01.T01 AT1G77770 42.553 94 54 0 131 224 78 171 1.69e-14 72.8
MsG0880046733.01.T01 AT1G77770 42.553 94 54 0 131 224 78 171 1.69e-14 72.8
MsG0880046733.01.T01 AT1G15430 36.559 93 59 0 138 230 107 199 2.29e-14 72.4
MsG0880046733.01.T01 AT1G15430 36.559 93 59 0 138 230 107 199 2.29e-14 72.4

Find 83 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAGTACGCTGACGTTC+TGG 0.178982 8:+77526184 None:intergenic
AGAATTCCTTTGGGGAAAAT+AGG 0.191788 8:-77526114 MsG0880046733.01.T01:CDS
CTAGACTCCAAATGAGAATT+AGG 0.257653 8:-77525988 MsG0880046733.01.T01:CDS
TAGCAAACCACCATCATCTA+TGG 0.284633 8:+77526066 None:intergenic
CTCCAGTACGCTGACGTTCT+GGG 0.341044 8:+77526185 None:intergenic
AGCACACTTCAGAATTCCTT+TGG 0.341379 8:-77526124 MsG0880046733.01.T01:CDS
TGCATAATATATGCAAGGTC+TGG 0.358977 8:-77528422 MsG0880046733.01.T01:CDS
AAGGTCTCCTAATTCTCATT+TGG 0.375028 8:+77525981 None:intergenic
AGATCCAGATTCTGCCTCAT+AGG 0.378053 8:+77525940 None:intergenic
GAATTCCTTTGGGGAAAATA+GGG 0.382186 8:-77526113 MsG0880046733.01.T01:CDS
GAAACCTATGAGGCAGAATC+TGG 0.385700 8:-77525944 MsG0880046733.01.T01:CDS
ATAATAGAAGGCGCCGTGTT+AGG 0.387059 8:-77525871 MsG0880046733.01.T01:CDS
GCACACTTCAGAATTCCTTT+GGG 0.390622 8:-77526123 MsG0880046733.01.T01:CDS
CCAAGTTATGGCTGTCTGTC+TGG 0.398177 8:+77525833 None:intergenic
GAGGGAGGTTGGAGCGGCAA+AGG 0.415685 8:-77526165 MsG0880046733.01.T01:CDS
ACTTGAGGAACGGTTGGTGG+TGG 0.415825 8:+77526574 None:intergenic
AATAGGGTTGATGATGGCCT+TGG 0.444018 8:-77526097 MsG0880046733.01.T01:CDS
TTGGAGCGGCAAAGGGATCT+TGG 0.457397 8:-77526157 MsG0880046733.01.T01:CDS
GACCCAGAACGTCAGCGTAC+TGG 0.460868 8:-77526187 MsG0880046733.01.T01:CDS
CTTGAGGAACGGTTGGTGGT+GGG 0.461118 8:+77526575 None:intergenic
TCCCGTGAACTTAGCTCAGT+TGG 0.461719 8:-77528455 MsG0880046733.01.T01:CDS
ATGGAGGCTCTGATAATAGA+AGG 0.463609 8:-77525883 MsG0880046733.01.T01:CDS
TGTGAGAGTTGCAACTTCAC+TGG 0.466148 8:-77526274 MsG0880046733.01.T01:CDS
GCTTCAGTGCTTTGATCTTG+AGG 0.472232 8:+77526523 None:intergenic
AGGACATATAAAGGAGTGGA+AGG 0.475623 8:-77526347 MsG0880046733.01.T01:CDS
TATAAAGGAGTGGAAGGTAG+TGG 0.476198 8:-77526341 MsG0880046733.01.T01:CDS
AATTCTGAAGTGTGCTAAGA+AGG 0.480549 8:+77526131 None:intergenic
TGATACAACAAATGAGTCTT+CGG 0.482085 8:-77525906 MsG0880046733.01.T01:CDS
TCCACTTGAGGAACGGTTGG+TGG 0.492367 8:+77526571 None:intergenic
ACTCTCACAAGAACAGCTCC+TGG 0.497762 8:+77526288 None:intergenic
TAGGAGACCTTCTAGACTCT+GGG 0.502205 8:-77525969 MsG0880046733.01.T01:CDS
CTTTCCACTTGAGGAACGGT+TGG 0.503184 8:+77526568 None:intergenic
GGAGTGGAAGGTAGTGGAAG+GGG 0.505285 8:-77526335 MsG0880046733.01.T01:CDS
AGGGAGGTTGGAGCGGCAAA+GGG 0.510338 8:-77526164 MsG0880046733.01.T01:CDS
GCATAATATATGCAAGGTCT+GGG 0.510663 8:-77528421 MsG0880046733.01.T01:intron
TTAGGAGACCTTCTAGACTC+TGG 0.516613 8:-77525970 MsG0880046733.01.T01:CDS
ATAGGGTTGATGATGGCCTT+GGG 0.517467 8:-77526096 MsG0880046733.01.T01:CDS
ACCACCAACCGTTCCTCAAG+TGG 0.521961 8:-77526572 MsG0880046733.01.T01:CDS
CATTTGGAGTCTAGTTCCTG+TGG 0.523248 8:+77525997 None:intergenic
ACCAACTGAGCTAAGTTCAC+GGG 0.528075 8:+77528454 None:intergenic
TTGAGGAACGGTTGGTGGTG+GGG 0.531685 8:+77526576 None:intergenic
TCTGTGTAGAGGACATATAA+AGG 0.533860 8:-77526356 MsG0880046733.01.T01:CDS
GGGCTCGCTCCCATAGATGA+TGG 0.535056 8:-77526076 MsG0880046733.01.T01:CDS
GGGGAAAATAGGGTTGATGA+TGG 0.538252 8:-77526103 MsG0880046733.01.T01:CDS
AAGGCGCCGTGTTAGGAGAC+GGG 0.544937 8:-77525864 MsG0880046733.01.T01:CDS
TTCACTTTCCACTTGAGGAA+CGG 0.548067 8:+77526564 None:intergenic
GAAATTTCACTTTCCACTTG+AGG 0.552784 8:+77526559 None:intergenic
TACCAACTGAGCTAAGTTCA+CGG 0.555998 8:+77528453 None:intergenic
TCAGCGTACTGGAGGGAGGT+TGG 0.556190 8:-77526176 MsG0880046733.01.T01:CDS
GAACTTAGCTCAGTTGGTAA+AGG 0.556541 8:-77528449 MsG0880046733.01.T01:CDS
AGGAGTGGAAGGTAGTGGAA+GGG 0.560558 8:-77526336 MsG0880046733.01.T01:CDS
GAAGGCGCCGTGTTAGGAGA+CGG 0.561161 8:-77525865 MsG0880046733.01.T01:CDS
CGTTCTGGGTCTACAGCAGA+TGG 0.561876 8:+77526199 None:intergenic
CATCTATGGGAGCGAGCCCA+AGG 0.564974 8:+77526080 None:intergenic
AAGGAGTGGAAGGTAGTGGA+AGG 0.579339 8:-77526337 MsG0880046733.01.T01:CDS
GACAATGCATAATATATGCA+AGG 0.579650 8:-77528427 MsG0880046733.01.T01:CDS
AGCAAACCACCATCATCTAT+GGG 0.581022 8:+77526067 None:intergenic
ACAGCAGATGGCCGCTCAAG+AGG 0.582028 8:+77526211 None:intergenic
ATTTCATGAATGAAAAGTCC+AGG 0.585029 8:-77526306 MsG0880046733.01.T01:CDS
TGTCTCGTCTTCACAGGACA+AGG 0.589055 8:+77526399 None:intergenic
CACACTTCAGAATTCCTTTG+GGG 0.590183 8:-77526122 MsG0880046733.01.T01:CDS
CAGATGAAGGTTGAAGAATG+AGG 0.592517 8:+77526032 None:intergenic
ACAACAAATGAGTCTTCGGA+TGG 0.599152 8:-77525902 MsG0880046733.01.T01:CDS
TTTGAACCCGTCTCCTAACA+CGG 0.599202 8:+77525858 None:intergenic
CTAGTATGCCCTCTGTGTAG+AGG 0.604818 8:-77526367 MsG0880046733.01.T01:CDS
GTACTGGAGGGAGGTTGGAG+CGG 0.609752 8:-77526171 MsG0880046733.01.T01:CDS
ACAAATGAGTCTTCGGATGG+AGG 0.614245 8:-77525899 MsG0880046733.01.T01:CDS
TTATATGTCCTCTACACAGA+GGG 0.614279 8:+77526359 None:intergenic
TCTGTATCTAGAGGTACCAC+AGG 0.622058 8:-77526013 MsG0880046733.01.T01:CDS
GGAGACCTTCTAGACTCTGG+GGG 0.622064 8:-77525967 MsG0880046733.01.T01:CDS
CAACCTTCATCTGTATCTAG+AGG 0.628290 8:-77526022 MsG0880046733.01.T01:CDS
CCAGAACGTCAGCGTACTGG+AGG 0.632446 8:-77526184 MsG0880046733.01.T01:CDS
GTACCTCTAGATACAGATGA+AGG 0.635385 8:+77526019 None:intergenic
CTCGCTCCCATAGATGATGG+TGG 0.652592 8:-77526073 MsG0880046733.01.T01:CDS
AACGTCAGCGTACTGGAGGG+AGG 0.664272 8:-77526180 MsG0880046733.01.T01:CDS
GTAGAGGACATATAAAGGAG+TGG 0.672954 8:-77526351 MsG0880046733.01.T01:CDS
GAGTTGAACATCCTCTTGAG+CGG 0.674704 8:-77526222 MsG0880046733.01.T01:CDS
AGGAGACCTTCTAGACTCTG+GGG 0.676704 8:-77525968 MsG0880046733.01.T01:CDS
TGTACAAGAAGAAACTAGCG+AGG 0.687555 8:-77526440 MsG0880046733.01.T01:CDS
CAGAACGTCAGCGTACTGGA+GGG 0.702385 8:-77526183 MsG0880046733.01.T01:CDS
GAGACCTTCTAGACTCTGGG+GGG 0.708302 8:-77525966 MsG0880046733.01.T01:CDS
GTACAAGAAGAAACTAGCGA+GGG 0.728262 8:-77526439 MsG0880046733.01.T01:CDS
TTTATATGTCCTCTACACAG+AGG 0.761161 8:+77526358 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATACAACAATTATTTTTT+CGG + Chr8:77525928-77525947 None:intergenic 10.0%
!!! ATTTTTTTTTTACTTTGTTA+TGG - Chr8:77526399-77526418 MsG0880046733.01.T01:CDS 10.0%
!!! CATGTTAATTTTTTTTTTTT+TGG - Chr8:77527234-77527253 MsG0880046733.01.T01:intron 10.0%
!! AAAAAAAATCGAAAAAACTA+AGG + Chr8:77526388-77526407 None:intergenic 15.0%
!! AACTCAAATTAACAAAAATT+AGG + Chr8:77526497-77526516 None:intergenic 15.0%
!! AATTTAATACACTACATTAT+AGG + Chr8:77526061-77526080 None:intergenic 15.0%
!!! TATTTTTACTTTTTCGATTT+AGG - Chr8:77526471-77526490 MsG0880046733.01.T01:CDS 15.0%
!!! TTATTTTAAAGAACAATGAA+TGG + Chr8:77526984-77527003 None:intergenic 15.0%
!! ATGAAAAATAGAGAAAATGA+CGG + Chr8:77526167-77526186 None:intergenic 20.0%
!! CGATGAAAATATAAAAGAAT+GGG - Chr8:77527554-77527573 MsG0880046733.01.T01:intron 20.0%
!! TCAATTAGTTGTCAATTAAT+TGG - Chr8:77526808-77526827 MsG0880046733.01.T01:intron 20.0%
!!! ATCGCATTTTAATTGTTTAA+TGG - Chr8:77527262-77527281 MsG0880046733.01.T01:intron 20.0%
!!! CAAATATTTTTCAGAAACTA+AGG - Chr8:77527079-77527098 MsG0880046733.01.T01:intron 20.0%
!!! CAAATTTTCAAGTCTTATAT+GGG - Chr8:77526659-77526678 MsG0880046733.01.T01:intron 20.0%
!!! CCATTCTTTTATATTTTCAT+CGG + Chr8:77527556-77527575 None:intergenic 20.0%
!!! TCAAATTTTCAAGTCTTATA+TGG - Chr8:77526658-77526677 MsG0880046733.01.T01:intron 20.0%
!!! TGTTTGTTTTTGTTTGTTTT+GGG - Chr8:77526724-77526743 MsG0880046733.01.T01:intron 20.0%
!!! TTATTCATTTTGAGTGATTA+TGG - Chr8:77527181-77527200 MsG0880046733.01.T01:intron 20.0%
!!! TTGTTTGTTTTTGTTTGTTT+TGG - Chr8:77526723-77526742 MsG0880046733.01.T01:intron 20.0%
! AAATCGAAAAAACTAAGGAT+TGG + Chr8:77526383-77526402 None:intergenic 25.0%
! AATCGAAAAAACTAAGGATT+GGG + Chr8:77526382-77526401 None:intergenic 25.0%
! AATTGATGAACAATACAGAA+TGG + Chr8:77526794-77526813 None:intergenic 25.0%
! ACATTTGTTTGTAACATTGA+AGG - Chr8:77527041-77527060 MsG0880046733.01.T01:intron 25.0%
! ATAAAGGTTAACTTATTCCA+TGG + Chr8:77526927-77526946 None:intergenic 25.0%
! ATTGATGAACAATACAGAAT+GGG + Chr8:77526793-77526812 None:intergenic 25.0%
! CCGATGAAAATATAAAAGAA+TGG - Chr8:77527553-77527572 MsG0880046733.01.T01:intron 25.0%
! GAAAAATTAGGGATTTGATT+TGG + Chr8:77526356-77526375 None:intergenic 25.0%
! TAATACACTACATTATAGGA+AGG + Chr8:77526057-77526076 None:intergenic 25.0%
! TTGCACGAGTTTATTAATAA+AGG + Chr8:77526943-77526962 None:intergenic 25.0%
!!! ATTATTTTTTCGGTAGTGTT+CGG + Chr8:77525918-77525937 None:intergenic 25.0%
!!! TCAACGTAAATCTTTTAAGT+AGG + Chr8:77527135-77527154 None:intergenic 25.0%
!!! TCTAATTACAGGATTTGTTT+TGG - Chr8:77527298-77527317 MsG0880046733.01.T01:intron 25.0%
!!! TGTCAATTAATTGGCTTTTT+TGG - Chr8:77526817-77526836 MsG0880046733.01.T01:intron 25.0%
AATGAATGGTTTCATAGAAC+TGG + Chr8:77526970-77526989 None:intergenic 30.0%
AGCTGAATTATGTTATTCCA+TGG - Chr8:77526907-77526926 MsG0880046733.01.T01:intron 30.0%
ATCGAAAAAACTAAGGATTG+GGG + Chr8:77526381-77526400 None:intergenic 30.0%
ATGGGTTTCAAACTATCAAA+GGG + Chr8:77526775-77526794 None:intergenic 30.0%
ATTTCATGAATGAAAAGTCC+AGG - Chr8:77527999-77528018 MsG0880046733.01.T01:intron 30.0%
GACAATGCATAATATATGCA+AGG - Chr8:77525878-77525897 MsG0880046733.01.T01:CDS 30.0%
TGATACAACAAATGAGTCTT+CGG - Chr8:77528399-77528418 MsG0880046733.01.T01:intron 30.0%
TGCATTTGATGTCTAATTAC+AGG - Chr8:77527287-77527306 MsG0880046733.01.T01:intron 30.0%
! AATGGGTTTCAAACTATCAA+AGG + Chr8:77526776-77526795 None:intergenic 30.0%
! ATATTTTCATCGGACTCTAA+AGG + Chr8:77527546-77527565 None:intergenic 30.0%
! CAGAACATTTAAAATGCCTA+AGG - Chr8:77527428-77527447 MsG0880046733.01.T01:intron 30.0%
!!! ATTGGCTTTTTTGGTTTAGT+CGG - Chr8:77526826-77526845 MsG0880046733.01.T01:intron 30.0%
!!! TTATTTTTTCGGTAGTGTTC+GGG + Chr8:77525917-77525936 None:intergenic 30.0%
!!! TTTGTTTTGGGTGAATTTCA+AGG - Chr8:77526736-77526755 MsG0880046733.01.T01:intron 30.0%
AAATTGAGAGGAGAAATCGA+TGG + Chr8:77526327-77526346 None:intergenic 35.0%
AAGGTCTCCTAATTCTCATT+TGG + Chr8:77528327-77528346 None:intergenic 35.0%
ATTTGGTTACCGAAATTGAG+AGG + Chr8:77526339-77526358 None:intergenic 35.0%
CTAGACTCCAAATGAGAATT+AGG - Chr8:77528317-77528336 MsG0880046733.01.T01:intron 35.0%
GAAATTTCACTTTCCACTTG+AGG + Chr8:77527749-77527768 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - Chr8:77525884-77525903 MsG0880046733.01.T01:CDS 35.0%
TAAAAGAATGGGAAGAAGCT+AGG - Chr8:77527565-77527584 MsG0880046733.01.T01:intron 35.0%
TAGATGTAGATCTTCTGACA+CGG + Chr8:77527518-77527537 None:intergenic 35.0%
TCGAAAAAACTAAGGATTGG+GGG + Chr8:77526380-77526399 None:intergenic 35.0%
TCGATTTCTCCTCTCAATTT+CGG - Chr8:77526327-77526346 MsG0880046733.01.T01:CDS 35.0%
TCTGTGTAGAGGACATATAA+AGG - Chr8:77527949-77527968 MsG0880046733.01.T01:intron 35.0%
TGCATAATATATGCAAGGTC+TGG - Chr8:77525883-77525902 MsG0880046733.01.T01:CDS 35.0%
TGGGTTTCAAACTATCAAAG+GGG + Chr8:77526774-77526793 None:intergenic 35.0%
TTATATGTCCTCTACACAGA+GGG + Chr8:77527949-77527968 None:intergenic 35.0%
TTTATATGTCCTCTACACAG+AGG + Chr8:77527950-77527969 None:intergenic 35.0%
! AGAATTCCTTTGGGGAAAAT+AGG - Chr8:77528191-77528210 MsG0880046733.01.T01:intron 35.0%
! GAATTCCTTTGGGGAAAATA+GGG - Chr8:77528192-77528211 MsG0880046733.01.T01:intron 35.0%
! TTTCAGAAACTAAGGCATCA+TGG - Chr8:77527087-77527106 MsG0880046733.01.T01:intron 35.0%
!! AATTCTGAAGTGTGCTAAGA+AGG + Chr8:77528177-77528196 None:intergenic 35.0%
!! GCTATTTCTTCTGCTCAAAA+AGG - Chr8:77526443-77526462 MsG0880046733.01.T01:CDS 35.0%
!!! TATTTTTTCGGTAGTGTTCG+GGG + Chr8:77525916-77525935 None:intergenic 35.0%
!!! TTATGGATCGAGTTTTGAGA+TGG - Chr8:77526416-77526435 MsG0880046733.01.T01:CDS 35.0%
ACAACAAATGAGTCTTCGGA+TGG - Chr8:77528403-77528422 MsG0880046733.01.T01:intron 40.0%
AGCAAACCACCATCATCTAT+GGG + Chr8:77528241-77528260 None:intergenic 40.0%
AGCACACTTCAGAATTCCTT+TGG - Chr8:77528181-77528200 MsG0880046733.01.T01:intron 40.0%
AGCTAGTGTTGCACATGTAT+GGG + Chr8:77527662-77527681 None:intergenic 40.0%
AGGACATATAAAGGAGTGGA+AGG - Chr8:77527958-77527977 MsG0880046733.01.T01:intron 40.0%
AGGATTGGGGGTGAAAAATT+AGG + Chr8:77526368-77526387 None:intergenic 40.0%
ATATGTTCATCCCACGAGAA+AGG - Chr8:77527630-77527649 MsG0880046733.01.T01:intron 40.0%
CAACCTTCATCTGTATCTAG+AGG - Chr8:77528283-77528302 MsG0880046733.01.T01:intron 40.0%
CACACTTCAGAATTCCTTTG+GGG - Chr8:77528183-77528202 MsG0880046733.01.T01:intron 40.0%
CAGATGAAGGTTGAAGAATG+AGG + Chr8:77528276-77528295 None:intergenic 40.0%
GCACACTTCAGAATTCCTTT+GGG - Chr8:77528182-77528201 MsG0880046733.01.T01:intron 40.0%
GGATTGGGGGTGAAAAATTA+GGG + Chr8:77526367-77526386 None:intergenic 40.0%
GGCATCATGGAGTTATCTTA+AGG - Chr8:77527100-77527119 MsG0880046733.01.T01:intron 40.0%
GGGTTTCAAACTATCAAAGG+GGG + Chr8:77526773-77526792 None:intergenic 40.0%
GTACAAGAAGAAACTAGCGA+GGG - Chr8:77527866-77527885 MsG0880046733.01.T01:intron 40.0%
GTACCTCTAGATACAGATGA+AGG + Chr8:77528289-77528308 None:intergenic 40.0%
GTAGAGGACATATAAAGGAG+TGG - Chr8:77527954-77527973 MsG0880046733.01.T01:intron 40.0%
TACCAACTGAGCTAAGTTCA+CGG + Chr8:77525855-77525874 None:intergenic 40.0%
TAGCAAACCACCATCATCTA+TGG + Chr8:77528242-77528261 None:intergenic 40.0%
TAGCTAGTGTTGCACATGTA+TGG + Chr8:77527663-77527682 None:intergenic 40.0%
TATAAAGGAGTGGAAGGTAG+TGG - Chr8:77527964-77527983 MsG0880046733.01.T01:intron 40.0%
TGCCTAAGGAGAGAAAAGAT+AGG - Chr8:77527442-77527461 MsG0880046733.01.T01:intron 40.0%
TGTACAAGAAGAAACTAGCG+AGG - Chr8:77527865-77527884 MsG0880046733.01.T01:intron 40.0%
TTCACTTTCCACTTGAGGAA+CGG + Chr8:77527744-77527763 None:intergenic 40.0%
! ATCAACCCTATTTTCCCCAA+AGG + Chr8:77528200-77528219 None:intergenic 40.0%
! ATGGAGGCTCTGATAATAGA+AGG - Chr8:77528422-77528441 MsG0880046733.01.T01:CDS 40.0%
! GACCTATCTTTTCTCTCCTT+AGG + Chr8:77527447-77527466 None:intergenic 40.0%
! TGATTTTGTCTCGTCTTCAC+AGG + Chr8:77527915-77527934 None:intergenic 40.0%
!! GAACTTAGCTCAGTTGGTAA+AGG - Chr8:77525856-77525875 MsG0880046733.01.T01:CDS 40.0%
ACAAATGAGTCTTCGGATGG+AGG - Chr8:77528406-77528425 MsG0880046733.01.T01:intron 45.0%
ACCAACTGAGCTAAGTTCAC+GGG + Chr8:77525854-77525873 None:intergenic 45.0%
ACTGATCCAGACAGTTTGAG+TGG + Chr8:77527689-77527708 None:intergenic 45.0%
AGAAGAAACGTATGCTGTGG+TGG + Chr8:77526127-77526146 None:intergenic 45.0%
AGATCCAGATTCTGCCTCAT+AGG + Chr8:77528368-77528387 None:intergenic 45.0%
ATGAGGAGAACTGCATTGTG+AGG + Chr8:77527612-77527631 None:intergenic 45.0%
GAAACCTATGAGGCAGAATC+TGG - Chr8:77528361-77528380 MsG0880046733.01.T01:intron 45.0%
GAGTTGAACATCCTCTTGAG+CGG - Chr8:77528083-77528102 MsG0880046733.01.T01:intron 45.0%
GCTTCAGTGCTTTGATCTTG+AGG + Chr8:77527785-77527804 None:intergenic 45.0%
TAGGAGACCTTCTAGACTCT+GGG - Chr8:77528336-77528355 MsG0880046733.01.T01:intron 45.0%
TAGTGTTGCACATGTATGGG+CGG + Chr8:77527659-77527678 None:intergenic 45.0%
TCGATGGCAGTAGAGAAGAT+CGG + Chr8:77526311-77526330 None:intergenic 45.0%
TCTCGTGGGATGAACATATG+AGG + Chr8:77527629-77527648 None:intergenic 45.0%
TGAGGAGAACTGCATTGTGA+GGG + Chr8:77527611-77527630 None:intergenic 45.0%
TGTGAGAGTTGCAACTTCAC+TGG - Chr8:77528031-77528050 MsG0880046733.01.T01:intron 45.0%
TTAGGAGACCTTCTAGACTC+TGG - Chr8:77528335-77528354 MsG0880046733.01.T01:intron 45.0%
TTTGAACCCGTCTCCTAACA+CGG + Chr8:77528450-77528469 None:intergenic 45.0%
! CATTTGGAGTCTAGTTCCTG+TGG + Chr8:77528311-77528330 None:intergenic 45.0%
! CTCTTTCTCTCTCTAGCTCA+AGG - Chr8:77526208-77526227 MsG0880046733.01.T01:CDS 45.0%
!! AATAGGGTTGATGATGGCCT+TGG - Chr8:77528208-77528227 MsG0880046733.01.T01:intron 45.0%
!! ATAATAGAAGGCGCCGTGTT+AGG - Chr8:77528434-77528453 MsG0880046733.01.T01:CDS 45.0%
!! ATAGGGTTGATGATGGCCTT+GGG - Chr8:77528209-77528228 MsG0880046733.01.T01:intron 45.0%
!! GGGGAAAATAGGGTTGATGA+TGG - Chr8:77528202-77528221 MsG0880046733.01.T01:intron 45.0%
!! TCTGTATCTAGAGGTACCAC+AGG - Chr8:77528292-77528311 MsG0880046733.01.T01:intron 45.0%
ACTCTCACAAGAACAGCTCC+TGG + Chr8:77528020-77528039 None:intergenic 50.0%
AGGAGACCTTCTAGACTCTG+GGG - Chr8:77528337-77528356 MsG0880046733.01.T01:intron 50.0%
CTAGTATGCCCTCTGTGTAG+AGG - Chr8:77527938-77527957 MsG0880046733.01.T01:intron 50.0%
CTATCGCCACTCAAACTGTC+TGG - Chr8:77527680-77527699 MsG0880046733.01.T01:CDS 50.0%
CTTTCCACTTGAGGAACGGT+TGG + Chr8:77527740-77527759 None:intergenic 50.0%
GCAGTAGAGAAGATCGGAGT+TGG + Chr8:77526305-77526324 None:intergenic 50.0%
GCGAGAAGAAACGTATGCTG+TGG + Chr8:77526130-77526149 None:intergenic 50.0%
TCCCGTGAACTTAGCTCAGT+TGG - Chr8:77525850-77525869 MsG0880046733.01.T01:CDS 50.0%
TGTCTCGTCTTCACAGGACA+AGG + Chr8:77527909-77527928 None:intergenic 50.0%
! TATGCTGTGGTGGAGTAGTG+TGG + Chr8:77526117-77526136 None:intergenic 50.0%
!! AAGGAGTGGAAGGTAGTGGA+AGG - Chr8:77527968-77527987 MsG0880046733.01.T01:intron 50.0%
!! AGGAGTGGAAGGTAGTGGAA+GGG - Chr8:77527969-77527988 MsG0880046733.01.T01:intron 50.0%
ACCACCAACCGTTCCTCAAG+TGG - Chr8:77527733-77527752 MsG0880046733.01.T01:CDS 55.0%
AGCTAGGTGTCCAGTCTGCA+TGG - Chr8:77527581-77527600 MsG0880046733.01.T01:intron 55.0%
CAGAACGTCAGCGTACTGGA+GGG - Chr8:77528122-77528141 MsG0880046733.01.T01:intron 55.0%
CGGCTTGAGCTGCTTGGATA+AGG + Chr8:77527498-77527517 None:intergenic 55.0%
CTCCAGTACGCTGACGTTCT+GGG + Chr8:77528123-77528142 None:intergenic 55.0%
GAGACCTTCTAGACTCTGGG+GGG - Chr8:77528339-77528358 MsG0880046733.01.T01:intron 55.0%
GGAGACCTTCTAGACTCTGG+GGG - Chr8:77528338-77528357 MsG0880046733.01.T01:intron 55.0%
GTTTCCCCCCAGAGTCTAGA+AGG + Chr8:77528346-77528365 None:intergenic 55.0%
TCCACTTGAGGAACGGTTGG+TGG + Chr8:77527737-77527756 None:intergenic 55.0%
TGATGCGATTCAGCTCCTCC+CGG + Chr8:77526281-77526300 None:intergenic 55.0%
TTGGAGCGGCAAAGGGATCT+TGG - Chr8:77528148-77528167 MsG0880046733.01.T01:intron 55.0%
! ACTCTGGGGGGAAACCTATG+AGG - Chr8:77528351-77528370 MsG0880046733.01.T01:intron 55.0%
! CGTTCTGGGTCTACAGCAGA+TGG + Chr8:77528109-77528128 None:intergenic 55.0%
! CTCGCTCCCATAGATGATGG+TGG - Chr8:77528232-77528251 MsG0880046733.01.T01:intron 55.0%
! CTCTCTAGCTCAAGGAGCAG+CGG - Chr8:77526216-77526235 MsG0880046733.01.T01:CDS 55.0%
!! ACTTGAGGAACGGTTGGTGG+TGG + Chr8:77527734-77527753 None:intergenic 55.0%
!! CTTGAGGAACGGTTGGTGGT+GGG + Chr8:77527733-77527752 None:intergenic 55.0%
!! GGAGTGGAAGGTAGTGGAAG+GGG - Chr8:77527970-77527989 MsG0880046733.01.T01:intron 55.0%
!! TTGAGGAACGGTTGGTGGTG+GGG + Chr8:77527732-77527751 None:intergenic 55.0%
AACGTCAGCGTACTGGAGGG+AGG - Chr8:77528125-77528144 MsG0880046733.01.T01:intron 60.0%
ACAGCAGATGGCCGCTCAAG+AGG + Chr8:77528097-77528116 None:intergenic 60.0%
AGGGAGGTTGGAGCGGCAAA+GGG - Chr8:77528141-77528160 MsG0880046733.01.T01:intron 60.0%
ATGGGCGGCATCCTTTCTCG+TGG + Chr8:77527644-77527663 None:intergenic 60.0%
CATCTATGGGAGCGAGCCCA+AGG + Chr8:77528228-77528247 None:intergenic 60.0%
CCAGAACGTCAGCGTACTGG+AGG - Chr8:77528121-77528140 MsG0880046733.01.T01:intron 60.0%
CCTCCAGTACGCTGACGTTC+TGG + Chr8:77528124-77528143 None:intergenic 60.0%
CTGACACGGCTTGAGCTGCT+TGG + Chr8:77527504-77527523 None:intergenic 60.0%
GACCCAGAACGTCAGCGTAC+TGG - Chr8:77528118-77528137 MsG0880046733.01.T01:intron 60.0%
GGGCTCGCTCCCATAGATGA+TGG - Chr8:77528229-77528248 MsG0880046733.01.T01:intron 60.0%
GGTTGGGGTCGCATAGCAGA+GGG + Chr8:77526250-77526269 None:intergenic 60.0%
GTACTGGAGGGAGGTTGGAG+CGG - Chr8:77528134-77528153 MsG0880046733.01.T01:intron 60.0%
TCAGCGTACTGGAGGGAGGT+TGG - Chr8:77528129-77528148 MsG0880046733.01.T01:intron 60.0%
TGGGCGGCATCCTTTCTCGT+GGG + Chr8:77527643-77527662 None:intergenic 60.0%
! TCTAGCTCAAGGAGCAGCGG+CGG - Chr8:77526219-77526238 MsG0880046733.01.T01:CDS 60.0%
!! AAGGCGCCGTGTTAGGAGAC+GGG - Chr8:77528441-77528460 MsG0880046733.01.T01:CDS 60.0%
!! GAAGGCGCCGTGTTAGGAGA+CGG - Chr8:77528440-77528459 MsG0880046733.01.T01:CDS 60.0%
!! TGAGGGTGCTCCATGCAGAC+TGG + Chr8:77527594-77527613 None:intergenic 60.0%
CAGCTCCTCCCGGTGAACGA+GGG + Chr8:77526271-77526290 None:intergenic 65.0%
CCTCCCGGTGAACGAGGGTT+GGG + Chr8:77526266-77526285 None:intergenic 65.0%
CGACCCCAACCCTCGTTCAC+CGG - Chr8:77526259-77526278 MsG0880046733.01.T01:CDS 65.0%
CTCCCGGTGAACGAGGGTTG+GGG + Chr8:77526265-77526284 None:intergenic 65.0%
GACCCCAACCCTCGTTCACC+GGG - Chr8:77526260-77526279 MsG0880046733.01.T01:CDS 65.0%
GAGGGAGGTTGGAGCGGCAA+AGG - Chr8:77528140-77528159 MsG0880046733.01.T01:intron 65.0%
GGGTTGGGGTCGCATAGCAG+AGG + Chr8:77526251-77526270 None:intergenic 65.0%
TCAGCTCCTCCCGGTGAACG+AGG + Chr8:77526272-77526291 None:intergenic 65.0%
TCCTCCCGGTGAACGAGGGT+TGG + Chr8:77526267-77526286 None:intergenic 65.0%
TGGGGTCGCATAGCAGAGGG+AGG + Chr8:77526247-77526266 None:intergenic 65.0%
CCCAACCCTCGTTCACCGGG+AGG - Chr8:77526263-77526282 MsG0880046733.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 77525838 77528489 77525838 ID=MsG0880046733.01;Name=MsG0880046733.01
Chr8 mRNA 77525838 77528489 77525838 ID=MsG0880046733.01.T01;Parent=MsG0880046733.01;Name=MsG0880046733.01.T01;_AED=0.50;_eAED=0.60;_QI=0|0|0|1|1|1|3|0|320
Chr8 exon 77528422 77528489 77528422 ID=MsG0880046733.01.T01:exon:18465;Parent=MsG0880046733.01.T01
Chr8 exon 77527647 77527778 77527647 ID=MsG0880046733.01.T01:exon:18464;Parent=MsG0880046733.01.T01
Chr8 exon 77525838 77526600 77525838 ID=MsG0880046733.01.T01:exon:18463;Parent=MsG0880046733.01.T01
Chr8 CDS 77528422 77528489 77528422 ID=MsG0880046733.01.T01:cds;Parent=MsG0880046733.01.T01
Chr8 CDS 77527647 77527778 77527647 ID=MsG0880046733.01.T01:cds;Parent=MsG0880046733.01.T01
Chr8 CDS 77525838 77526600 77525838 ID=MsG0880046733.01.T01:cds;Parent=MsG0880046733.01.T01
Gene Sequence

>MsG0880046733.01.T01

ATGTTGTATTTGTCCCGTGAACTTAGCTCAGTTGGTAAAGGACAATGCATAATATATGCAAGGTCTGGCTCAGATAAACTTGAAATTGAAGCTTTTATTGCTGTTTATTGTGCTTATGAACTGTTTTATGAGTTGATTTGTTCTTATGATGCTATTATTTTAGCTTCACGTGAAAGATCAAATTTTCAAGTCTTATATGGAACCCCACCACCAACCGTTCCTCAAGTGGAAAGTGAAATTTCAAACTCTGACTCACCTCAAGATCAAAGCACTGAAGCAAATATCGTCAATGTGCAAGAAGAAACTATTGTCAATGTTCAAGAAGAAACTATCGTCGATGTACAAGAAGAAACTAGCGAGGGATTTGTTACAATGCAATCCTTGTCCTGTGAAGACGAGACAAAATCAAAGCTAGTATGCCCTCTGTGTAGAGGACATATAAAGGAGTGGAAGGTAGTGGAAGGGGCTCGTCATTTCATGAATGAAAAGTCCAGGAGCTGTTCTTGTGAGAGTTGCAACTTCACTGGTACATATACAGATCTCAGAAAGCATGCAAGAGTTGAACATCCTCTTGAGCGGCCATCTGCTGTAGACCCAGAACGTCAGCGTACTGGAGGGAGGTTGGAGCGGCAAAGGGATCTTGGTGACCTTCTTAGCACACTTCAGAATTCCTTTGGGGAAAATAGGGTTGATGATGGCCTTGGGCTCGCTCCCATAGATGATGGTGGTTTGCTAGCTGTATTTTTCCTCATTCTTCAACCTTCATCTGTATCTAGAGGTACCACAGGAACTAGACTCCAAATGAGAATTAGGAGACCTTCTAGACTCTGGGGGGAAACCTATGAGGCAGAATCTGGATCTGCTGCTAGAGATGATACAACAAATGAGTCTTCGGATGGAGGCTCTGATAATAGAAGGCGCCGTGTTAGGAGACGGGTTCAAACACCAGACAGACAGCCATAA

Protein sequence

>MsG0880046733.01.T01

MLYLSRELSSVGKGQCIIYARSGSDKLEIEAFIAVYCAYELFYELICSYDAIILASRERSNFQVLYGTPPPTVPQVESEISNSDSPQDQSTEANIVNVQEETIVNVQEETIVDVQEETSEGFVTMQSLSCEDETKSKLVCPLCRGHIKEWKVVEGARHFMNEKSRSCSCESCNFTGTYTDLRKHARVEHPLERPSAVDPERQRTGGRLERQRDLGDLLSTLQNSFGENRVDDGLGLAPIDDGGLLAVFFLILQPSSVSRGTTGTRLQMRIRRPSRLWGETYEAESGSAARDDTTNESSDGGSDNRRRRVRRRVQTPDRQP*