AlfalfaGEDB | MsG0380017066.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017066.01

KEGG: K22047
GO: GO:0016020 GO:0055085
PFAM: PF00924

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017066.01.T01	XP_024635234.1	76.941	425	47	5	1	374	121	545	0	639

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017066.01.T01	Q56X46	52.329	365	122	5	3	316	112	475	1.74E-120	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017066.01.T01	A0A396IZX7	76.941	425	47	5	1	374	121	545	0.0	639

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000008.01	MsG0380017066.01	0.800137	1.659320e-48	7.667551e-46
MsG0180001119.01	MsG0380017066.01	0.805452	1.325629e-49	7.015983e-47
MsG0180001120.01	MsG0380017066.01	0.830869	2.302734e-55	2.457149e-52
MsG0180002891.01	MsG0380017066.01	0.813136	2.981678e-51	1.931117e-48
MsG0180003253.01	MsG0380017066.01	0.806540	7.828786e-50	4.260329e-47
MsG0180003856.01	MsG0380017066.01	0.808166	3.539798e-50	2.009624e-47
MsG0180005639.01	MsG0380017066.01	0.818775	1.643747e-52	1.241934e-49
MsG0280010253.01	MsG0380017066.01	0.827923	1.196624e-54	1.171630e-51
MsG0380014517.01	MsG0380017066.01	0.852113	5.711309e-61	1.181148e-57
MsG0380016201.01	MsG0380017066.01	-0.807357	5.257900e-50	2.922389e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017066.01.T01	MTR_3g100320	76.941	425	47	5	1	374	109	533	0.0	638
MsG0380017066.01.T01	MTR_3g100280	55.349	430	133	8	1	373	119	546	6.37e-150	440
MsG0380017066.01.T01	MTR_3g100320	78.195	266	38	4	1	246	121	386	9.55e-140	404
MsG0380017066.01.T01	MTR_3g100280	54.167	384	118	7	47	373	1	383	1.08e-128	380
MsG0380017066.01.T01	MTR_5g032090	50.350	429	152	10	1	370	107	533	4.96e-128	384
MsG0380017066.01.T01	MTR_3g100300	28.354	328	181	13	38	342	3	299	9.37e-16	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017066.01.T01	AT5G10490	52.329	365	122	5	3	316	84	447	3.63e-122	367
MsG0380017066.01.T01	AT5G10490	52.329	365	122	5	3	316	110	473	1.23e-121	366
MsG0380017066.01.T01	AT5G10490	52.329	365	122	5	3	316	112	475	1.78e-121	366
MsG0380017066.01.T01	AT1G58200	50.773	388	134	7	1	335	111	494	3.68e-121	365
MsG0380017066.01.T01	AT1G58200	50.773	388	134	7	1	335	111	494	3.68e-121	365

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Find 129 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGAGGCCATTCTCT+TGG	0.492432	3:+91553734	MsG0380017066.01.T01:intron
AAACATGCCTTAGATACTGT+TGG	0.537438	3:-91548637	None:intergenic
AAAGCCAATTATACCAAGAG+CGG	0.646228	3:-91550236	None:intergenic
AACAAAGATTAAAGGATATG+AGG	0.385214	3:+91551802	MsG0380017066.01.T01:CDS
AACCTCTCCTACGCCGTTGC+AGG	0.261064	3:+91550275	MsG0380017066.01.T01:CDS
AACCTTTGCTGCTGTGGACT+GGG	0.325778	3:+91550462	MsG0380017066.01.T01:CDS
AAGATTCAGAGGCTAAATTT+CGG	0.378425	3:-91554099	None:intergenic
AAGATTGATGTGAGTGCTCT+TGG	0.470797	3:+91552122	MsG0380017066.01.T01:CDS
AAGCCAATTATACCAAGAGC+GGG	0.529821	3:-91550235	None:intergenic
AAGCTGTATATACTGCAGTA+TGG	0.361800	3:+91551435	MsG0380017066.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTCAGAGGCTAAATTT+CGG	-	Chr3:91554102-91554121	None:intergenic	30.0%
AAGGGAAGAAAATAAGATAC+TGG	-	Chr3:91552406-91552425	None:intergenic	30.0%
AAGTAGAGAAGAAGAGATAT+AGG	-	Chr3:91552950-91552969	None:intergenic	30.0%
ACAAGCACAAAATTTCTGTA+TGG	+	Chr3:91551113-91551132	MsG0380017066.01.T01:CDS	30.0%
ACATGGCAAAGATATGTAAA+AGG	-	Chr3:91551175-91551194	None:intergenic	30.0%
ACTAGAGTTAGAACTCAAAT+TGG	+	Chr3:91554406-91554425	MsG0380017066.01.T01:three_prime_UTR	30.0%
AGATAGCTAATTGTGTACAA+TGG	-	Chr3:91549803-91549822	None:intergenic	30.0%
AGGCAATACATTAGTAATAC+TGG	+	Chr3:91548891-91548910	MsG0380017066.01.T01:five_prime_UTR	30.0%
AGTAGAGAAGAAGAGATATA+GGG	-	Chr3:91552949-91552968	None:intergenic	30.0%
ATAACTCTGACTAAAGTCAA+AGG	+	Chr3:91552665-91552684	MsG0380017066.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	91548601	91554517	91548601	ID=MsG0380017066.01;Name=MsG0380017066.01
Chr3	mRNA	91548601	91554517	91548601	ID=MsG0380017066.01.T01;Parent=MsG0380017066.01;Name=MsG0380017066.01.T01;_AED=0.32;_eAED=0.34;_QI=304\|0.4\|0.36\|1\|0.4\|0.45\|11\|459\|377
Chr3	exon	91548601	91548651	91548601	ID=MsG0380017066.01.T01:exon:12444;Parent=MsG0380017066.01.T01
Chr3	exon	91548806	91548935	91548806	ID=MsG0380017066.01.T01:exon:12445;Parent=MsG0380017066.01.T01
Chr3	exon	91549208	91549319	91549208	ID=MsG0380017066.01.T01:exon:12446;Parent=MsG0380017066.01.T01
Chr3	exon	91550209	91550315	91550209	ID=MsG0380017066.01.T01:exon:12447;Parent=MsG0380017066.01.T01
Chr3	exon	91550404	91550521	91550404	ID=MsG0380017066.01.T01:exon:12448;Parent=MsG0380017066.01.T01
Chr3	exon	91551104	91551204	91551104	ID=MsG0380017066.01.T01:exon:12449;Parent=MsG0380017066.01.T01
Chr3	exon	91551413	91551557	91551413	ID=MsG0380017066.01.T01:exon:12450;Parent=MsG0380017066.01.T01
Chr3	exon	91551732	91551841	91551732	ID=MsG0380017066.01.T01:exon:12451;Parent=MsG0380017066.01.T01
Chr3	exon	91551963	91552151	91551963	ID=MsG0380017066.01.T01:exon:12452;Parent=MsG0380017066.01.T01
Chr3	exon	91553050	91553106	91553050	ID=MsG0380017066.01.T01:exon:12453;Parent=MsG0380017066.01.T01
Chr3	exon	91553741	91554517	91553741	ID=MsG0380017066.01.T01:exon:12454;Parent=MsG0380017066.01.T01
Chr3	five_prime_UTR	91548601	91548651	91548601	ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3	five_prime_UTR	91548806	91548935	91548806	ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3	five_prime_UTR	91549208	91549319	91549208	ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3	five_prime_UTR	91550209	91550219	91550209	ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3	CDS	91550220	91550315	91550220	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91550404	91550521	91550404	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91551104	91551204	91551104	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91551413	91551557	91551413	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91551732	91551841	91551732	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91551963	91552151	91551963	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91553050	91553106	91553050	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	CDS	91553741	91554058	91553741	ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3	three_prime_UTR	91554059	91554517	91554059	ID=MsG0380017066.01.T01:three_prime_utr;Parent=MsG0380017066.01.T01

Gene Sequence

>MsG0380017066.01.T01

ATGCTTCAATTAATCCCCGCTCTTGGTATAATTGGCTTTGCTATCTTTGGTCTTGAACCTCTCCTACGCCGTTGCAGGGCTCTATTTCTCCAAGAATGGAACGATAAAAGTTGGAAGAAAAGTATTTCACGTTATATAATGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTGCTCTGCAGGTATCTTTCTGGATCAGAAGCTTTGTTCGACAAGCACAAAATTTCTGTATGGAGACAAATGCCGACAACAATGAAAGAAAAGTATGTTCCTTTTACATATCTTTGCCATGTTTCCATTCATATGAGCATTGATCTTATCGGGAAAGCTGTATATACTGCAGTATGGGTTGCTGCCGTGTCATTGTTTATGGAGTTGTTGGGTCTCTCCGCACAGAAGTGGTTGGCTGCTGGTGGTATGGGTACAGTATTGCTTTCACTTGCAGGTCATATTCACAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTAAAACAAAGATTAAAGGATATGAGGTTTCTGGTAGAGTTGAGCATGTAGGATGGTGGTCACCAACAGTAGTTAGAGGTGCTGATTGTGAAGCAGTTCACATTCCTAATCACAAGTTGAGTGTGAATGTTGTGAGGAATCTTAGTAAGAAAACTCATTGGCGCATCAAAACTCACCTTGCTATCAGTCACTTGGATGTCAACAAGATTGATGTGAGTGCTCTTGGTTTAATGATATTAGTATCTTGCTTTGTCAAAACTTCACATTCTGAAGAGTATCTCCGTGTTAAGGAGGCCATTCTCTTGGATCTTCTTAGAGTCATCAGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAATTCAGAAGATGTACAGTGATTCTGATTTAGAAATTGATCCATTTGACGACCCCATTTTCACTCGTTCGAGAGCAAAGGGAAACCACTCTTTCCCATTCACAAATTCACCTTATAAAGCTAAGCCTTCAACTCAATCAACTACTATAAATGATGAGAAAGATGCCAAGATTCGTGAAACCTTGATAACTGGTTTCAAAGATGAAGGTGAAAAAATTGCCGCAACATGGACGCCTCATCCAGTGTAA

Protein sequence

>MsG0380017066.01.T01

MLQLIPALGIIGFAIFGLEPLLRRCRALFLQEWNDKSWKKSISRYIMTSYFQPLLLWTGVMLLCRYLSGSEALFDKHKISVWRQMPTTMKEKYVPFTYLCHVSIHMSIDLIGKAVYTAVWVAAVSLFMELLGLSAQKWLAAGGMGTVLLSLAGHIHNFLSSVMIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTVVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDVNKIDVSALGLMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTIQKMYSDSDLEIDPFDDPIFTRSRAKGNHSFPFTNSPYKAKPSTQSTTINDEKDAKIRETLITGFKDEGEKIAATWTPHPV*