AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017066.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017066.01.T01 MTR_3g100320 76.941 425 47 5 1 374 109 533 0.0 638
MsG0380017066.01.T01 MTR_3g100280 55.349 430 133 8 1 373 119 546 6.37e-150 440
MsG0380017066.01.T01 MTR_3g100320 78.195 266 38 4 1 246 121 386 9.55e-140 404
MsG0380017066.01.T01 MTR_3g100280 54.167 384 118 7 47 373 1 383 1.08e-128 380
MsG0380017066.01.T01 MTR_5g032090 50.350 429 152 10 1 370 107 533 4.96e-128 384
MsG0380017066.01.T01 MTR_3g100300 28.354 328 181 13 38 342 3 299 9.37e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017066.01.T01 AT5G10490 52.329 365 122 5 3 316 84 447 3.63e-122 367
MsG0380017066.01.T01 AT5G10490 52.329 365 122 5 3 316 110 473 1.23e-121 366
MsG0380017066.01.T01 AT5G10490 52.329 365 122 5 3 316 112 475 1.78e-121 366
MsG0380017066.01.T01 AT1G58200 50.773 388 134 7 1 335 111 494 3.68e-121 365
MsG0380017066.01.T01 AT1G58200 50.773 388 134 7 1 335 111 494 3.68e-121 365

Find 129 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACAAATAATTTGATTTA+TGG 0.107623 3:-91554478 None:intergenic
CACAATTTATGTGCATAATA+TGG 0.134816 3:-91554446 None:intergenic
CGTTAGATGATAACAAAATT+TGG 0.143012 3:-91554165 None:intergenic
TGCTGCCGTGTCATTGTTTA+TGG 0.178720 3:+91551460 MsG0380017066.01.T01:CDS
ATCCCCGCTCTTGGTATAAT+TGG 0.180696 3:+91550232 MsG0380017066.01.T01:CDS
TGCTCTCGAACGAGTGAAAA+TGG 0.182392 3:-91553865 None:intergenic
ATAATTGGCTTTGCTATCTT+TGG 0.188913 3:+91550247 MsG0380017066.01.T01:CDS
CTGCTCTGCAGGTATCTTTC+TGG 0.189195 3:+91550491 MsG0380017066.01.T01:CDS
ATTAAAGGATATGAGGTTTC+TGG 0.198213 3:+91551809 MsG0380017066.01.T01:CDS
GCAACCTTTGCATATATAAA+TGG 0.224580 3:+91554372 MsG0380017066.01.T01:three_prime_UTR
TGTGAGTGCTCTTGGTTTAA+TGG 0.244095 3:+91552130 MsG0380017066.01.T01:CDS
CAACCTTTGCTGCTGTGGAC+TGG 0.249892 3:+91550461 MsG0380017066.01.T01:CDS
AACCTCTCCTACGCCGTTGC+AGG 0.261064 3:+91550275 MsG0380017066.01.T01:CDS
GGGTGATGTTTCTGATTTAG+AGG 0.275710 3:-91554143 None:intergenic
AGATTCAGAGGCTAAATTTC+GGG 0.275982 3:-91554098 None:intergenic
GGGATTAATTGAAGCATAAT+TGG 0.279859 3:-91550214 None:intergenic
GTTAGATGATAACAAAATTT+GGG 0.281708 3:-91554164 None:intergenic
GTTGAAGGCTTAGCTTTATA+AGG 0.287270 3:-91553921 None:intergenic
CATAATATGGGTAATCAGTT+AGG 0.296725 3:-91554433 None:intergenic
ACAGTATTGCTTTCACTTGC+AGG 0.308252 3:+91551533 MsG0380017066.01.T01:CDS
TTCGATTGTCTCATGACTTT+AGG 0.319511 3:+91548871 MsG0380017066.01.T01:five_prime_UTR
AGGCAATACATTAGTAATAC+TGG 0.324900 3:+91548891 MsG0380017066.01.T01:five_prime_UTR
AACCTTTGCTGCTGTGGACT+GGG 0.325778 3:+91550462 MsG0380017066.01.T01:CDS
ATTCGTGAAACCTTGATAAC+TGG 0.330316 3:+91553981 MsG0380017066.01.T01:CDS
TATCAAGGTTTCACGAATCT+TGG 0.330485 3:-91553976 None:intergenic
CGGATTAAAACAAAGATTAA+AGG 0.332484 3:+91551794 MsG0380017066.01.T01:CDS
AATTCTACAATGACATATTC+AGG 0.347346 3:+91548843 MsG0380017066.01.T01:five_prime_UTR
ATAGTAGTTGATTGAGTTGA+AGG 0.349386 3:-91553936 None:intergenic
GATTTAGAGGCCTTCTGAAC+TGG 0.357096 3:-91554130 None:intergenic
AAGCTGTATATACTGCAGTA+TGG 0.361800 3:+91551435 MsG0380017066.01.T01:CDS
GTGGTTGGCTGCTGGTGGTA+TGG 0.365271 3:+91551508 MsG0380017066.01.T01:CDS
ACTAGAGTTAGAACTCAAAT+TGG 0.367139 3:+91554406 MsG0380017066.01.T01:three_prime_UTR
TCTCTCTCCAACAGTATCTA+AGG 0.371637 3:+91548630 MsG0380017066.01.T01:five_prime_UTR
ACATGGCAAAGATATGTAAA+AGG 0.374954 3:-91551172 None:intergenic
GTCATTGTTTATGGAGTTGT+TGG 0.376702 3:+91551469 MsG0380017066.01.T01:CDS
CTTATGTCAAGCTGGGTCTA+TGG 0.377770 3:+91554325 MsG0380017066.01.T01:three_prime_UTR
AAGATTCAGAGGCTAAATTT+CGG 0.378425 3:-91554099 None:intergenic
ATGTTGACTTTAACTTATCC+TGG 0.383411 3:-91554063 None:intergenic
AACAAAGATTAAAGGATATG+AGG 0.385214 3:+91551802 MsG0380017066.01.T01:CDS
GTGAAAATGGGGTCGTCAAA+TGG 0.395728 3:-91553852 None:intergenic
ACAATTTATGTGCATAATAT+GGG 0.395988 3:-91554445 None:intergenic
TTCACACTCAACTTGTGATT+AGG 0.403461 3:-91552023 None:intergenic
TGGTTGGCTGCTGGTGGTAT+GGG 0.409781 3:+91551509 MsG0380017066.01.T01:CDS
CTGGGGTAATGCTGCTCTGC+AGG 0.412173 3:+91550480 MsG0380017066.01.T01:CDS
ATCTTTGAAACCAGTTATCA+AGG 0.419330 3:-91553991 None:intergenic
GCTCTCGAACGAGTGAAAAT+GGG 0.423150 3:-91553864 None:intergenic
CAGATGAGCATTGATCTTAT+CGG 0.431050 3:+91551410 MsG0380017066.01.T01:intron
ATCCGCTCATTCACAACAAA+TGG 0.433039 3:-91551776 None:intergenic
ACAAGCACAAAATTTCTGTA+TGG 0.446067 3:+91551113 MsG0380017066.01.T01:CDS
ATAACTGGTTTCAAAGATGA+AGG 0.457024 3:+91553996 MsG0380017066.01.T01:CDS
TTCAGTGGAACGATAAAAGT+TGG 0.457315 3:+91550399 MsG0380017066.01.T01:intron
TTATAAGGTGAATTTGTGAA+TGG 0.457800 3:-91553906 None:intergenic
TATAAGGTGAATTTGTGAAT+GGG 0.464354 3:-91553905 None:intergenic
AGATGAGCATTGATCTTATC+GGG 0.466557 3:+91551411 MsG0380017066.01.T01:intron
TTCACTCGTTCGAGAGCAAA+GGG 0.468144 3:+91553870 MsG0380017066.01.T01:CDS
CTTATCCTGGGACTTTACAC+TGG 0.468864 3:-91554050 None:intergenic
AAGATTGATGTGAGTGCTCT+TGG 0.470797 3:+91552122 MsG0380017066.01.T01:CDS
TGAAGAGTATCTCCGTGTTA+AGG 0.473513 3:+91553085 MsG0380017066.01.T01:CDS
GCACAGAAGTGGTTGGCTGC+TGG 0.483881 3:+91551500 MsG0380017066.01.T01:CDS
TGGTCACCAACAGTAGTTAG+AGG 0.488933 3:+91551975 MsG0380017066.01.T01:CDS
AAAACAGGAGGCCATTCTCT+TGG 0.492432 3:+91553734 MsG0380017066.01.T01:intron
ATGTTACACACACACATGAA+TGG 0.498130 3:-91551197 None:intergenic
GGTCTATGGAATGGTTCGGT+TGG 0.498185 3:+91554339 MsG0380017066.01.T01:three_prime_UTR
CTTAGAGTCATCAGTCATCA+TGG 0.504609 3:+91553762 MsG0380017066.01.T01:CDS
CCCTAGCTGATTAGCCATTG+AGG 0.504678 3:+91554283 MsG0380017066.01.T01:three_prime_UTR
CCCTCAATGGCTAATCAGCT+AGG 0.508055 3:-91554284 None:intergenic
CCTAGCTGATTAGCCATTGA+GGG 0.510490 3:+91554284 MsG0380017066.01.T01:three_prime_UTR
CTGAATTGTGCGGATGGGTG+TGG 0.513236 3:-91553796 None:intergenic
GCTGGGTCTATGGAATGGTT+CGG 0.514432 3:+91554335 MsG0380017066.01.T01:three_prime_UTR
GTGTCGGTCTGCCTTGGTAC+CGG 0.515358 3:+91549288 MsG0380017066.01.T01:five_prime_UTR
TTTGTTGTGTCGGTCTGCCT+TGG 0.519884 3:+91549282 MsG0380017066.01.T01:five_prime_UTR
CTTCAATTAATCCCCGCTCT+TGG 0.524426 3:+91550223 MsG0380017066.01.T01:CDS
ATAATATGGGTAATCAGTTA+GGG 0.524874 3:-91554432 None:intergenic
TTATCAAGCTTATGTCAAGC+TGG 0.526521 3:+91554317 MsG0380017066.01.T01:three_prime_UTR
TCATTGTTTATGGAGTTGTT+GGG 0.529134 3:+91551470 MsG0380017066.01.T01:CDS
AAGCCAATTATACCAAGAGC+GGG 0.529821 3:-91550235 None:intergenic
TGTTGACTTTAACTTATCCT+GGG 0.529999 3:-91554062 None:intergenic
TTTCACTCGTTCGAGAGCAA+AGG 0.537364 3:+91553869 MsG0380017066.01.T01:CDS
AAACATGCCTTAGATACTGT+TGG 0.537438 3:-91548637 None:intergenic
CATATTATGCACATAAATTG+TGG 0.537790 3:+91554447 MsG0380017066.01.T01:three_prime_UTR
CTCATCCAGTGTAAAGTCCC+AGG 0.537833 3:+91554045 MsG0380017066.01.T01:exon
CATGAATCATCACACTTGAA+AGG 0.538831 3:-91551745 None:intergenic
AGCTGTATATACTGCAGTAT+GGG 0.539129 3:+91551436 MsG0380017066.01.T01:CDS
TAATACTAGACTGCCCTCAA+TGG 0.540488 3:-91554297 None:intergenic
ACCTCTCCTACGCCGTTGCA+GGG 0.550012 3:+91550276 MsG0380017066.01.T01:CDS
TCAACCATTTATATATGCAA+AGG 0.550765 3:-91554376 None:intergenic
TGAGGTTTCTGGTAGAGTTG+AGG 0.552626 3:+91551820 MsG0380017066.01.T01:CDS
ATCTTAGTAAGAAAACTCAT+TGG 0.552673 3:+91552057 MsG0380017066.01.T01:CDS
TTCTGATAATCCAGTTCAGA+AGG 0.553518 3:+91554120 MsG0380017066.01.T01:three_prime_UTR
CACACACATGAATGGAAACA+TGG 0.556950 3:-91551189 None:intergenic
CATCTTCTGAATTGTGCGGA+TGG 0.559810 3:-91553802 None:intergenic
GTCAAGCTGGGTCTATGGAA+TGG 0.560919 3:+91554330 MsG0380017066.01.T01:three_prime_UTR
GGCCATTTGTTGTGAATGAG+CGG 0.561264 3:+91551774 MsG0380017066.01.T01:CDS
TCAGCACCTCTAACTACTGT+TGG 0.561707 3:-91551981 None:intergenic
ACCTTTGCTGCTGTGGACTG+GGG 0.562252 3:+91550463 MsG0380017066.01.T01:CDS
ACATTACATCTAAGAAGTAC+AGG 0.562707 3:-91549259 None:intergenic
TAAGAAGTACAGGCTTATGT+TGG 0.564324 3:-91549249 None:intergenic
TCTAAGAAGATCCAAGAGAA+TGG 0.567023 3:-91553745 None:intergenic
TGGGTCTCTCCGCACAGAAG+TGG 0.571017 3:+91551489 MsG0380017066.01.T01:CDS
CTGGGACTTTACACTGGATG+AGG 0.572469 3:-91554044 None:intergenic
TATCAAGCTTATGTCAAGCT+GGG 0.575502 3:+91554318 MsG0380017066.01.T01:three_prime_UTR
TCTCTCCGCACAGAAGTGGT+TGG 0.580196 3:+91551493 MsG0380017066.01.T01:CDS
ATCTTCTGAATTGTGCGGAT+GGG 0.581018 3:-91553801 None:intergenic
ATAGAGCCCTGCAACGGCGT+AGG 0.581176 3:-91550282 None:intergenic
TGGATGAGGCGTCCATGTTG+CGG 0.581833 3:-91554030 None:intergenic
CTCTCGAACGAGTGAAAATG+GGG 0.581916 3:-91553863 None:intergenic
GCCCTGCAACGGCGTAGGAG+AGG 0.582945 3:-91550277 None:intergenic
TCACCTTGCTATCAGTCACT+TGG 0.584498 3:+91552091 MsG0380017066.01.T01:CDS
AGGTATCTTTCTGGATCAGA+AGG 0.585926 3:+91550500 MsG0380017066.01.T01:CDS
ACCCCAGTCCACAGCAGCAA+AGG 0.591276 3:-91550464 None:intergenic
AATTTGTGAATGGGAAAGAG+TGG 0.592121 3:-91553896 None:intergenic
CATCCAAGTGACTGATAGCA+AGG 0.593216 3:-91552094 None:intergenic
GGAGCCTCACACGCTACAGC+CGG 0.594461 3:-91549307 None:intergenic
CCTCAATGGCTAATCAGCTA+GGG 0.595650 3:-91554283 None:intergenic
TCATCAGTCATCATGGAGCT+CGG 0.597209 3:+91553769 MsG0380017066.01.T01:CDS
TTCTGTAGCATGTAGGATGG+TGG 0.601690 3:+91551955 MsG0380017066.01.T01:intron
GTGTGATGATTCATGCAACT+CGG 0.610555 3:+91551753 MsG0380017066.01.T01:CDS
TTAGATGATAACAAAATTTG+GGG 0.623288 3:-91554163 None:intergenic
TGGATTATCAGAAGATTCAG+AGG 0.623721 3:-91554110 None:intergenic
CAGAAGTGGTTGGCTGCTGG+TGG 0.645748 3:+91551503 MsG0380017066.01.T01:CDS
CAACTCCATAAACAATGACA+CGG 0.645901 3:-91551465 None:intergenic
AAAGCCAATTATACCAAGAG+CGG 0.646228 3:-91550236 None:intergenic
ACACGCTACAGCCGGTACCA+AGG 0.648418 3:-91549299 None:intergenic
GGAGAAATAGAGCCCTGCAA+CGG 0.655517 3:-91550288 None:intergenic
AATCTAGTCTCACCTTAACA+CGG 0.682332 3:-91553097 None:intergenic
AGCAGCCAACCACTTCTGTG+CGG 0.694661 3:-91551498 None:intergenic
TGTACATCTTCTGAATTGTG+CGG 0.699375 3:-91553806 None:intergenic
AGCCAATTATACCAAGAGCG+GGG 0.701628 3:-91550234 None:intergenic
AGTTGAGTGTGAATGTTGTG+AGG 0.723498 3:+91552033 MsG0380017066.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACACAAAAATAAATAAAAAA+GGG + Chr3:91550825-91550844 MsG0380017066.01.T01:intron 10.0%
!! CAAAAAAAAAAAAAAAAAAC+TGG - Chr3:91548674-91548693 None:intergenic 10.0%
!!! TACTATCATTATTTTTTATT+TGG + Chr3:91550919-91550938 MsG0380017066.01.T01:intron 10.0%
!!! TAGAATAATTTTCAAAAAAT+AGG - Chr3:91549706-91549725 None:intergenic 10.0%
!!! TATACAAATAATTTGATTTA+TGG - Chr3:91554481-91554500 None:intergenic 10.0%
!!! TTTTTTGTAAACATAAAAAT+TGG - Chr3:91553273-91553292 None:intergenic 10.0%
!! AAAAAGTAAAAAGTAAATCT+TGG - Chr3:91553327-91553346 None:intergenic 15.0%
!! ATATATATAGTTGTCAAAAA+TGG - Chr3:91548722-91548741 None:intergenic 15.0%
!! ATGAATAAAATTAAAACAGA+AGG - Chr3:91548757-91548776 None:intergenic 15.0%
!! ATGGTATTTAAAAAATTTAC+TGG + Chr3:91552149-91552168 MsG0380017066.01.T01:intron 15.0%
!! CACACAAAAATAAATAAAAA+AGG + Chr3:91550824-91550843 MsG0380017066.01.T01:intron 15.0%
!! TAATTGTTTCATCATAAATA+TGG + Chr3:91553621-91553640 MsG0380017066.01.T01:intron 15.0%
!! TGAATAAAATTAAAACAGAA+GGG - Chr3:91548756-91548775 None:intergenic 15.0%
!! TGGTATTTAAAAAATTTACT+GGG + Chr3:91552150-91552169 MsG0380017066.01.T01:intron 15.0%
!! TTGTTAGAATTAATGTAAAT+TGG + Chr3:91549422-91549441 MsG0380017066.01.T01:intron 15.0%
!!! AATAATCCTATATATTTTAC+AGG - Chr3:91551314-91551333 None:intergenic 15.0%
!!! ACTATTTTATATCACTTAAA+TGG - Chr3:91551911-91551930 None:intergenic 15.0%
!!! CATAATTTAATTTAGAGTTT+CGG - Chr3:91550011-91550030 None:intergenic 15.0%
!!! CATTTATTTCATTAACATTT+TGG + Chr3:91552900-91552919 MsG0380017066.01.T01:intron 15.0%
!!! GTAACATTTTTCTAAAATAA+TGG + Chr3:91551213-91551232 MsG0380017066.01.T01:intron 15.0%
!!! TTATATTTTGAAATTGATGT+AGG + Chr3:91550167-91550186 MsG0380017066.01.T01:intron 15.0%
!!! TTTTGTCATTTACTTTTTTA+TGG + Chr3:91551616-91551635 MsG0380017066.01.T01:intron 15.0%
!! AAAATTAGATACTAACTTCT+TGG - Chr3:91550312-91550331 None:intergenic 20.0%
!! AACAAATGCATAACAAATTT+AGG - Chr3:91553520-91553539 None:intergenic 20.0%
!! AATAAGCTTATCTTACAATT+AGG - Chr3:91550773-91550792 None:intergenic 20.0%
!! AATTATCTAACTTACTGAAA+AGG + Chr3:91551851-91551870 MsG0380017066.01.T01:intron 20.0%
!! ACAATTTATGTGCATAATAT+GGG - Chr3:91554448-91554467 None:intergenic 20.0%
!! ATAAACCAATTAACAGAAAA+AGG - Chr3:91552359-91552378 None:intergenic 20.0%
!! CAAAAATAAATAAAAAAGGG+AGG + Chr3:91550828-91550847 MsG0380017066.01.T01:intron 20.0%
!! CACATAATAGCTTATTATAT+AGG + Chr3:91553410-91553429 MsG0380017066.01.T01:intron 20.0%
!! GTGTAATTATTATGGTAATT+AGG + Chr3:91549464-91549483 MsG0380017066.01.T01:intron 20.0%
!! GTTAGATGATAACAAAATTT+GGG - Chr3:91554167-91554186 None:intergenic 20.0%
!! GTTTAATGTTTCAACATTAT+TGG + Chr3:91548963-91548982 MsG0380017066.01.T01:intron 20.0%
!! TAATGTAAATTGGACAATTA+TGG + Chr3:91549432-91549451 MsG0380017066.01.T01:intron 20.0%
!! TATTGTATTTAGGAATTAGT+AGG - Chr3:91550134-91550153 None:intergenic 20.0%
!! TTAGATGATAACAAAATTTG+GGG - Chr3:91554166-91554185 None:intergenic 20.0%
!!! AATTTTTTTTGTTCTACTAG+AGG - Chr3:91552277-91552296 None:intergenic 20.0%
!!! AGTGATATAAAATAGTTTTC+TGG + Chr3:91551915-91551934 MsG0380017066.01.T01:intron 20.0%
!!! ATTTACTTCTGACTATTTTA+TGG + Chr3:91549160-91549179 MsG0380017066.01.T01:intron 20.0%
!!! TATATTCAAGTCATTTTGTT+CGG + Chr3:91553660-91553679 MsG0380017066.01.T01:intron 20.0%
! AAAAATTGGTGAAAAAATCG+AGG - Chr3:91553259-91553278 None:intergenic 25.0%
! AACAAAAAAAATTGCACAGA+AGG + Chr3:91552284-91552303 MsG0380017066.01.T01:intron 25.0%
! AACAAAGATTAAAGGATATG+AGG + Chr3:91551802-91551821 MsG0380017066.01.T01:CDS 25.0%
! AATTCTACAATGACATATTC+AGG + Chr3:91548843-91548862 MsG0380017066.01.T01:five_prime_UTR 25.0%
! AGTCAACCTGTAAAATATAT+AGG + Chr3:91551305-91551324 MsG0380017066.01.T01:intron 25.0%
! ATAATATGGGTAATCAGTTA+GGG - Chr3:91554435-91554454 None:intergenic 25.0%
! ATCTTAGTAAGAAAACTCAT+TGG + Chr3:91552057-91552076 MsG0380017066.01.T01:CDS 25.0%
! CACAATTTATGTGCATAATA+TGG - Chr3:91554449-91554468 None:intergenic 25.0%
! CATATTATGCACATAAATTG+TGG + Chr3:91554447-91554466 MsG0380017066.01.T01:three_prime_UTR 25.0%
! CCAATGATTGATAAATTACT+AGG - Chr3:91552843-91552862 None:intergenic 25.0%
! CCTAAATACAATATCTATGA+AGG + Chr3:91550141-91550160 MsG0380017066.01.T01:intron 25.0%
! CCTAGTAATTTATCAATCAT+TGG + Chr3:91552840-91552859 MsG0380017066.01.T01:intron 25.0%
! CCTTCATAGATATTGTATTT+AGG - Chr3:91550144-91550163 None:intergenic 25.0%
! CGGATTAAAACAAAGATTAA+AGG + Chr3:91551794-91551813 MsG0380017066.01.T01:CDS 25.0%
! CGTTAGATGATAACAAAATT+TGG - Chr3:91554168-91554187 None:intergenic 25.0%
! CTACTATTCTAATCTTCATT+TGG - Chr3:91551287-91551306 None:intergenic 25.0%
! CTTATTATATAGGCTGATAT+CGG + Chr3:91553420-91553439 MsG0380017066.01.T01:intron 25.0%
! CTTCAAACACATAATAGTAA+TGG - Chr3:91551039-91551058 None:intergenic 25.0%
! GAAAATTATTCTACTTGCAA+TGG + Chr3:91549713-91549732 MsG0380017066.01.T01:intron 25.0%
! GAAACAATAGTAATGTAATG+AGG - Chr3:91553481-91553500 None:intergenic 25.0%
! GCATCAAATGATATGATTTA+TGG - Chr3:91550070-91550089 None:intergenic 25.0%
! GTTGTCAAATATACTATGAT+AGG + Chr3:91552794-91552813 MsG0380017066.01.T01:intron 25.0%
! TAATATCTGCAACAGAAAAA+GGG - Chr3:91553036-91553055 None:intergenic 25.0%
! TAATTTCCATGTGATAAAAC+AGG + Chr3:91553719-91553738 MsG0380017066.01.T01:intron 25.0%
! TATAAGGTGAATTTGTGAAT+GGG - Chr3:91553908-91553927 None:intergenic 25.0%
! TCAACCATTTATATATGCAA+AGG - Chr3:91554379-91554398 None:intergenic 25.0%
! TTATAAGGTGAATTTGTGAA+TGG - Chr3:91553909-91553928 None:intergenic 25.0%
! TTTCCACAATGTTATTATGA+GGG + Chr3:91551333-91551352 MsG0380017066.01.T01:intron 25.0%
! TTTCCATCATGCAATAAAAT+TGG + Chr3:91549577-91549596 MsG0380017066.01.T01:intron 25.0%
! TTTCTTCTTCAAATTACTCT+CGG + Chr3:91553347-91553366 MsG0380017066.01.T01:intron 25.0%
!! AAACACATAATAGTAATGGA+TGG - Chr3:91551035-91551054 None:intergenic 25.0%
!! AAACCAATTTTATTGCATGA+TGG - Chr3:91549583-91549602 None:intergenic 25.0%
!! AGTATATTTGACAACCATTT+TGG - Chr3:91552789-91552808 None:intergenic 25.0%
!! GGAATAAAAAAGTATAGACA+CGG + Chr3:91550849-91550868 MsG0380017066.01.T01:intron 25.0%
!! TACTTTTCTTTCATTGTTGT+CGG - Chr3:91551148-91551167 None:intergenic 25.0%
!! TATTTTCTTGAGATTTGTGT+CGG + Chr3:91549889-91549908 MsG0380017066.01.T01:intron 25.0%
!! TGATACCTTTTTCTGTTAAT+TGG + Chr3:91552351-91552370 MsG0380017066.01.T01:intron 25.0%
!! TTTTCCACAATGTTATTATG+AGG + Chr3:91551332-91551351 MsG0380017066.01.T01:intron 25.0%
!!! AACACATAATAGTAATGGAT+GGG - Chr3:91551034-91551053 None:intergenic 25.0%
!!! AGAAAGTATCAACTATCAAA+GGG - Chr3:91551577-91551596 None:intergenic 25.0%
!!! ATTTTATTGCATGATGGAAA+AGG - Chr3:91549577-91549596 None:intergenic 25.0%
!!! TAGAAAGTATCAACTATCAA+AGG - Chr3:91551578-91551597 None:intergenic 25.0%
!!! TGCAATAAAATTGGTTTGTT+TGG + Chr3:91549586-91549605 MsG0380017066.01.T01:intron 25.0%
!!! TGTTGTTGTTTTTTACATGT+AGG - Chr3:91549674-91549693 None:intergenic 25.0%
!!! TTGATAACATATGTTTTCAG+TGG + Chr3:91550384-91550403 MsG0380017066.01.T01:intron 25.0%
!!! TTTTTTTCATCTTGCTTTGA+TGG - Chr3:91554199-91554218 None:intergenic 25.0%
AAGATTCAGAGGCTAAATTT+CGG - Chr3:91554102-91554121 None:intergenic 30.0%
AAGGGAAGAAAATAAGATAC+TGG - Chr3:91552406-91552425 None:intergenic 30.0%
AAGTAGAGAAGAAGAGATAT+AGG - Chr3:91552950-91552969 None:intergenic 30.0%
ACAAGCACAAAATTTCTGTA+TGG + Chr3:91551113-91551132 MsG0380017066.01.T01:CDS 30.0%
ACATGGCAAAGATATGTAAA+AGG - Chr3:91551175-91551194 None:intergenic 30.0%
ACTAGAGTTAGAACTCAAAT+TGG + Chr3:91554406-91554425 MsG0380017066.01.T01:three_prime_UTR 30.0%
AGATAGCTAATTGTGTACAA+TGG - Chr3:91549803-91549822 None:intergenic 30.0%
AGGCAATACATTAGTAATAC+TGG + Chr3:91548891-91548910 MsG0380017066.01.T01:five_prime_UTR 30.0%
AGTAGAGAAGAAGAGATATA+GGG - Chr3:91552949-91552968 None:intergenic 30.0%
ATAACTCTGACTAAAGTCAA+AGG + Chr3:91552665-91552684 MsG0380017066.01.T01:intron 30.0%
ATTAAAGGATATGAGGTTTC+TGG + Chr3:91551809-91551828 MsG0380017066.01.T01:CDS 30.0%
CATAATATGGGTAATCAGTT+AGG - Chr3:91554436-91554455 None:intergenic 30.0%
CTAAAAGGAAAACCAAAGTT+TGG - Chr3:91549934-91549953 None:intergenic 30.0%
CTAATATCTGCAACAGAAAA+AGG - Chr3:91553037-91553056 None:intergenic 30.0%
CTTTGTGAATTGACAGAATA+TGG + Chr3:91549192-91549211 MsG0380017066.01.T01:intron 30.0%
GACAAAACATAATCGATTAC+CGG - Chr3:91549038-91549057 None:intergenic 30.0%
GCAACCTTTGCATATATAAA+TGG + Chr3:91554372-91554391 MsG0380017066.01.T01:three_prime_UTR 30.0%
GGGATTAATTGAAGCATAAT+TGG - Chr3:91550217-91550236 None:intergenic 30.0%
GGTTATGACTTATGATTGAA+AGG + Chr3:91549734-91549753 MsG0380017066.01.T01:intron 30.0%
TAAATTGGACAATTATGGAC+TGG + Chr3:91549437-91549456 MsG0380017066.01.T01:intron 30.0%
TATCAATCATTGGATCTGAT+TGG + Chr3:91552850-91552869 MsG0380017066.01.T01:intron 30.0%
TCATCTGTTTCATTCCAAAA+TGG + Chr3:91552772-91552791 MsG0380017066.01.T01:intron 30.0%
TCATTGTTTATGGAGTTGTT+GGG + Chr3:91551470-91551489 MsG0380017066.01.T01:CDS 30.0%
TTAGAAACCTGATTCAACTA+CGG - Chr3:91552646-91552665 None:intergenic 30.0%
TTTAGGCTACACAATATTTC+TGG - Chr3:91553503-91553522 None:intergenic 30.0%
TTTGTTCGGTTAACTGTTAA+GGG + Chr3:91553674-91553693 MsG0380017066.01.T01:intron 30.0%
! AAAAGCTTTTGTAAGCATTC+TGG - Chr3:91552742-91552761 None:intergenic 30.0%
! AATTTACTGGGATTTTCTGA+TGG + Chr3:91552162-91552181 MsG0380017066.01.T01:intron 30.0%
! ACATTACATCTAAGAAGTAC+AGG - Chr3:91549262-91549281 None:intergenic 30.0%
! ATAACTGGTTTCAAAGATGA+AGG + Chr3:91553996-91554015 MsG0380017066.01.T01:CDS 30.0%
! ATTTTCTTGAGATTTGTGTC+GGG + Chr3:91549890-91549909 MsG0380017066.01.T01:intron 30.0%
! TCATATTTTCTGTAGCATGT+AGG + Chr3:91551948-91551967 MsG0380017066.01.T01:intron 30.0%
! TTGTTCTACTAGAGGATTTT+TGG - Chr3:91552269-91552288 None:intergenic 30.0%
! TTTAATTTAGAGTTTCGGTG+CGG - Chr3:91550006-91550025 None:intergenic 30.0%
! TTTTGTTCGGTTAACTGTTA+AGG + Chr3:91553673-91553692 MsG0380017066.01.T01:intron 30.0%
!! AACTCATCTAAAGCTTTAAG+TGG - Chr3:91551256-91551275 None:intergenic 30.0%
!! ATAATTGGCTTTGCTATCTT+TGG + Chr3:91550247-91550266 MsG0380017066.01.T01:CDS 30.0%
!! ATAGTAGTTGATTGAGTTGA+AGG - Chr3:91553939-91553958 None:intergenic 30.0%
!! ATCTTTGAAACCAGTTATCA+AGG - Chr3:91553994-91554013 None:intergenic 30.0%
!! ATGTTGACTTTAACTTATCC+TGG - Chr3:91554066-91554085 None:intergenic 30.0%
!! GATGTAATGTTTTGTTGTGT+CGG + Chr3:91549272-91549291 MsG0380017066.01.T01:five_prime_UTR 30.0%
!! TGTTGACTTTAACTTATCCT+GGG - Chr3:91554065-91554084 None:intergenic 30.0%
!!! CAAACTTTGGTTTTCCTTTT+AGG + Chr3:91549932-91549951 MsG0380017066.01.T01:intron 30.0%
!!! CTTGTTGCTTTTGTACATTT+TGG + Chr3:91553455-91553474 MsG0380017066.01.T01:intron 30.0%
AAACATGCCTTAGATACTGT+TGG - Chr3:91548640-91548659 None:intergenic 35.0%
AAACTTCTGTCAACTACGAA+AGG - Chr3:91549381-91549400 None:intergenic 35.0%
AAAGCCAATTATACCAAGAG+CGG - Chr3:91550239-91550258 None:intergenic 35.0%
AAGCTGTATATACTGCAGTA+TGG + Chr3:91551435-91551454 MsG0380017066.01.T01:CDS 35.0%
AATATGTCCACAGTTGTTGT+CGG + Chr3:91550718-91550737 MsG0380017066.01.T01:intron 35.0%
AATCTACCTTGAAGAACAGT+AGG - Chr3:91550685-91550704 None:intergenic 35.0%
AATCTAGTCTCACCTTAACA+CGG - Chr3:91553100-91553119 None:intergenic 35.0%
AATTTGTGAATGGGAAAGAG+TGG - Chr3:91553899-91553918 None:intergenic 35.0%
ACAGAAGTTTCGTCATTCAT+TGG + Chr3:91549391-91549410 MsG0380017066.01.T01:intron 35.0%
AGAACCAAGACTGAAGATAA+AGG - Chr3:91552425-91552444 None:intergenic 35.0%
AGATTCAGAGGCTAAATTTC+GGG - Chr3:91554101-91554120 None:intergenic 35.0%
AGCAAAACCATAGGGTTAAA+TGG - Chr3:91552605-91552624 None:intergenic 35.0%
AGCAACTCAATTGTATTAGC+TGG + Chr3:91553231-91553250 MsG0380017066.01.T01:intron 35.0%
AGCTAATTGTGTACAATGGT+TGG - Chr3:91549799-91549818 None:intergenic 35.0%
AGCTGTATATACTGCAGTAT+GGG + Chr3:91551436-91551455 MsG0380017066.01.T01:CDS 35.0%
AGGAATTAGTAGGCTGAAAA+AGG - Chr3:91550124-91550143 None:intergenic 35.0%
AGGACTTGACAAACTTTCAA+CGG - Chr3:91550532-91550551 None:intergenic 35.0%
AGGCAATACATAAATGACAC+AGG - Chr3:91552823-91552842 None:intergenic 35.0%
AGGTCATGTAATGCTATATC+AGG + Chr3:91550187-91550206 MsG0380017066.01.T01:intron 35.0%
ATGTTACACACACACATGAA+TGG - Chr3:91551200-91551219 None:intergenic 35.0%
CAACTCCATAAACAATGACA+CGG - Chr3:91551468-91551487 None:intergenic 35.0%
CATAATCGATTACCGGAATT+AGG - Chr3:91549031-91549050 None:intergenic 35.0%
CATGAATCATCACACTTGAA+AGG - Chr3:91551748-91551767 None:intergenic 35.0%
CTAGAAATGTAAACAAGCAG+AGG - Chr3:91552553-91552572 None:intergenic 35.0%
CTGGACTCGTGTAATTATTA+TGG + Chr3:91549456-91549475 MsG0380017066.01.T01:intron 35.0%
GAACCAAGACTGAAGATAAA+GGG - Chr3:91552424-91552443 None:intergenic 35.0%
GCTAATTGTGTACAATGGTT+GGG - Chr3:91549798-91549817 None:intergenic 35.0%
GGCGCAAGATATTAATAGTA+TGG - Chr3:91550752-91550771 None:intergenic 35.0%
GTCATTGTTTATGGAGTTGT+TGG + Chr3:91551469-91551488 MsG0380017066.01.T01:CDS 35.0%
TATCAAGCTTATGTCAAGCT+GGG + Chr3:91554318-91554337 MsG0380017066.01.T01:three_prime_UTR 35.0%
TATCAAGGTTTCACGAATCT+TGG - Chr3:91553979-91553998 None:intergenic 35.0%
TCCAGAAAATCAAGCTCTTA+TGG + Chr3:91552327-91552346 MsG0380017066.01.T01:intron 35.0%
TCTAAGAAGATCCAAGAGAA+TGG - Chr3:91553748-91553767 None:intergenic 35.0%
TGAATAGCAGCAAAACCATA+GGG - Chr3:91552613-91552632 None:intergenic 35.0%
TGGATTATCAGAAGATTCAG+AGG - Chr3:91554113-91554132 None:intergenic 35.0%
TGTACATCTTCTGAATTGTG+CGG - Chr3:91553809-91553828 None:intergenic 35.0%
TGTTGACAGAAACCTAATTC+CGG + Chr3:91549016-91549035 MsG0380017066.01.T01:intron 35.0%
TTACCATACGAAAGGATGAT+GGG - Chr3:91549861-91549880 None:intergenic 35.0%
TTATCAAGCTTATGTCAAGC+TGG + Chr3:91554317-91554336 MsG0380017066.01.T01:three_prime_UTR 35.0%
TTCACACTCAACTTGTGATT+AGG - Chr3:91552026-91552045 None:intergenic 35.0%
TTCAGTGGAACGATAAAAGT+TGG + Chr3:91550399-91550418 MsG0380017066.01.T01:intron 35.0%
TTCGATTGTCTCATGACTTT+AGG + Chr3:91548871-91548890 MsG0380017066.01.T01:five_prime_UTR 35.0%
TTCTGATAATCCAGTTCAGA+AGG + Chr3:91554120-91554139 MsG0380017066.01.T01:three_prime_UTR 35.0%
TTCTTGTGCAGTGATGTTTA+TGG + Chr3:91549111-91549130 MsG0380017066.01.T01:intron 35.0%
TTTCCATGTGATAAAACAGG+AGG + Chr3:91553722-91553741 MsG0380017066.01.T01:intron 35.0%
! AAAGTACCAATTAGGCTTGT+AGG + Chr3:91552498-91552517 MsG0380017066.01.T01:intron 35.0%
! ACCATAAGAGCTTGATTTTC+TGG - Chr3:91552331-91552350 None:intergenic 35.0%
! ATCTAAGGCATGTTTAAGCA+AGG + Chr3:91548645-91548664 MsG0380017066.01.T01:intron 35.0%
! ATTCGTGAAACCTTGATAAC+TGG + Chr3:91553981-91554000 MsG0380017066.01.T01:CDS 35.0%
! ATTTTCTGTAGCATGTAGGA+TGG + Chr3:91551952-91551971 MsG0380017066.01.T01:intron 35.0%
! CAATTGCTTTAGACAACACA+TGG - Chr3:91550338-91550357 None:intergenic 35.0%
! GATGTTTGATTCTTTTTCCG+AGG - Chr3:91548605-91548624 None:intergenic 35.0%
! TAAGAAGTACAGGCTTATGT+TGG - Chr3:91549252-91549271 None:intergenic 35.0%
!! AGATGAGCATTGATCTTATC+GGG + Chr3:91551411-91551430 MsG0380017066.01.T01:intron 35.0%
!! CAGATGAGCATTGATCTTAT+CGG + Chr3:91551410-91551429 MsG0380017066.01.T01:intron 35.0%
!! GGTTCTGAAAGGAAGTTATA+AGG + Chr3:91552439-91552458 MsG0380017066.01.T01:intron 35.0%
!! GTTGAAGGCTTAGCTTTATA+AGG - Chr3:91553924-91553943 None:intergenic 35.0%
!!! ATTGCACAGAAGGTTTTTTC+TGG + Chr3:91552294-91552313 MsG0380017066.01.T01:intron 35.0%
!!! TTTGGTTTTCCTTTTAGGAG+AGG + Chr3:91549937-91549956 MsG0380017066.01.T01:intron 35.0%
AAAGGCTTTCTTTGACATGC+TGG + Chr3:91549752-91549771 MsG0380017066.01.T01:intron 40.0%
AAGATTGATGTGAGTGCTCT+TGG + Chr3:91552122-91552141 MsG0380017066.01.T01:CDS 40.0%
AAGCCAATTATACCAAGAGC+GGG - Chr3:91550238-91550257 None:intergenic 40.0%
AAGGCTTTCTTTGACATGCT+GGG + Chr3:91549753-91549772 MsG0380017066.01.T01:intron 40.0%
ACAGTAGCAACTTTCAACAG+CGG - Chr3:91549331-91549350 None:intergenic 40.0%
ACAGTAGGCAAATGTAAGCA+CGG - Chr3:91550670-91550689 None:intergenic 40.0%
ACAGTATTGCTTTCACTTGC+AGG + Chr3:91551533-91551552 MsG0380017066.01.T01:CDS 40.0%
ACCTTGACGTAAACTGTTTC+AGG + Chr3:91550562-91550581 MsG0380017066.01.T01:intron 40.0%
ACGTCAAGGTGCATACAAAT+AGG - Chr3:91550552-91550571 None:intergenic 40.0%
AGGTATCTTTCTGGATCAGA+AGG + Chr3:91550500-91550519 MsG0380017066.01.T01:CDS 40.0%
AGTTGAGTGTGAATGTTGTG+AGG + Chr3:91552033-91552052 MsG0380017066.01.T01:CDS 40.0%
ATCCGCTCATTCACAACAAA+TGG - Chr3:91551779-91551798 None:intergenic 40.0%
ATCTTCTGAATTGTGCGGAT+GGG - Chr3:91553804-91553823 None:intergenic 40.0%
ATGCTATGAGATGCATCTCA+AGG - Chr3:91552469-91552488 None:intergenic 40.0%
ATGTACAAAAGCAACAAGCC+TGG - Chr3:91553453-91553472 None:intergenic 40.0%
CACACACATGAATGGAAACA+TGG - Chr3:91551192-91551211 None:intergenic 40.0%
CATTTGCCTACTGTTCTTCA+AGG + Chr3:91550676-91550695 MsG0380017066.01.T01:intron 40.0%
CCTTGACGTAAACTGTTTCA+GGG + Chr3:91550563-91550582 MsG0380017066.01.T01:intron 40.0%
CTAGATTGACGATAGCAACT+TGG + Chr3:91553113-91553132 MsG0380017066.01.T01:intron 40.0%
CTTAGAGTCATCAGTCATCA+TGG + Chr3:91553762-91553781 MsG0380017066.01.T01:CDS 40.0%
CTTCCCTTTATCTTCAGTCT+TGG + Chr3:91552418-91552437 MsG0380017066.01.T01:intron 40.0%
CTTGACGTAAACTGTTTCAG+GGG + Chr3:91550564-91550583 MsG0380017066.01.T01:intron 40.0%
GAGCTTTGCATTTACATTCC+AGG - Chr3:91551363-91551382 None:intergenic 40.0%
GCACCCTCATAATAACATTG+TGG - Chr3:91551339-91551358 None:intergenic 40.0%
GCTATCGCATCTTAAAACTG+AGG + Chr3:91552184-91552203 MsG0380017066.01.T01:intron 40.0%
GTGAAAAAATTGCCGCAACA+TGG + Chr3:91554018-91554037 MsG0380017066.01.T01:CDS 40.0%
GTGAATAGCAGCAAAACCAT+AGG - Chr3:91552614-91552633 None:intergenic 40.0%
GTGTGATGATTCATGCAACT+CGG + Chr3:91551753-91551772 MsG0380017066.01.T01:CDS 40.0%
GTTACCATACGAAAGGATGA+TGG - Chr3:91549862-91549881 None:intergenic 40.0%
TAAATGGAAACCACTCACGT+TGG - Chr3:91551895-91551914 None:intergenic 40.0%
TAATACTAGACTGCCCTCAA+TGG - Chr3:91554300-91554319 None:intergenic 40.0%
TCCTTAAGAGCAACTCTTCA+CGG + Chr3:91551668-91551687 MsG0380017066.01.T01:intron 40.0%
TCTCTCTCCAACAGTATCTA+AGG + Chr3:91548630-91548649 MsG0380017066.01.T01:five_prime_UTR 40.0%
TGACAGAGTTATCAGTGCAT+AGG - Chr3:91549640-91549659 None:intergenic 40.0%
TGAGAGAGTTACCATACGAA+AGG - Chr3:91549869-91549888 None:intergenic 40.0%
TGGAGGAGTGAGTAGTTATT+GGG + Chr3:91549969-91549988 MsG0380017066.01.T01:intron 40.0%
TGTGAGTGCTCTTGGTTTAA+TGG + Chr3:91552130-91552149 MsG0380017066.01.T01:CDS 40.0%
TTGCTACTGTTTCGTTGTCA+AGG + Chr3:91549341-91549360 MsG0380017066.01.T01:intron 40.0%
TTTCCCATCATCCTTTCGTA+TGG + Chr3:91549855-91549874 MsG0380017066.01.T01:intron 40.0%
! ATTTTCAACCTTTGCTGCTG+TGG + Chr3:91550456-91550475 MsG0380017066.01.T01:CDS 40.0%
! GGGTGATGTTTCTGATTTAG+AGG - Chr3:91554146-91554165 None:intergenic 40.0%
!! AGCAGCCGTTGCTTTAAAAT+CGG - Chr3:91550624-91550643 None:intergenic 40.0%
!! GGATGATGGGAAATAACATG+CGG - Chr3:91549848-91549867 None:intergenic 40.0%
!! GTTTTTGATTGCACGACTAG+TGG - Chr3:91550597-91550616 None:intergenic 40.0%
!! TCTTCAGTCTTGGTTCTGAA+AGG + Chr3:91552428-91552447 MsG0380017066.01.T01:intron 40.0%
!! TGAAGAGTATCTCCGTGTTA+AGG + Chr3:91553085-91553104 MsG0380017066.01.T01:CDS 40.0%
!!! AGCAGCTGTCTTTTTTAGCT+GGG + Chr3:91554226-91554245 MsG0380017066.01.T01:three_prime_UTR 40.0%
!!! CCAGTCCGATTTTAAAGCAA+CGG + Chr3:91550616-91550635 MsG0380017066.01.T01:intron 40.0%
AAAACAGGAGGCCATTCTCT+TGG + Chr3:91553734-91553753 MsG0380017066.01.T01:intron 45.0%
AAATGCTTCATTGCCGCCAT+GGG - Chr3:91552885-91552904 None:intergenic 45.0%
AACCATCCGTGGATGATTGA+AGG - Chr3:91549062-91549081 None:intergenic 45.0%
AGAGAATACCAAACCATCCG+TGG - Chr3:91549073-91549092 None:intergenic 45.0%
AGCCAATTATACCAAGAGCG+GGG - Chr3:91550237-91550256 None:intergenic 45.0%
ATCCCCGCTCTTGGTATAAT+TGG + Chr3:91550232-91550251 MsG0380017066.01.T01:CDS 45.0%
ATGCATCTCATAGCATAGCC+AGG + Chr3:91552473-91552492 MsG0380017066.01.T01:intron 45.0%
ATTGCCACCGTAGTTGAATC+AGG + Chr3:91552636-91552655 MsG0380017066.01.T01:intron 45.0%
CATCATAGCTGATATGCGCA+AGG + Chr3:91552237-91552256 MsG0380017066.01.T01:intron 45.0%
CATCCAAGTGACTGATAGCA+AGG - Chr3:91552097-91552116 None:intergenic 45.0%
CATCTTCTGAATTGTGCGGA+TGG - Chr3:91553805-91553824 None:intergenic 45.0%
CCCTGAAACAGTTTACGTCA+AGG - Chr3:91550566-91550585 None:intergenic 45.0%
CCTCAATGGCTAATCAGCTA+GGG - Chr3:91554286-91554305 None:intergenic 45.0%
CTACAGCCTACAAGCCTAAT+TGG - Chr3:91552507-91552526 None:intergenic 45.0%
CTCTCGAACGAGTGAAAATG+GGG - Chr3:91553866-91553885 None:intergenic 45.0%
CTTATCCTGGGACTTTACAC+TGG - Chr3:91554053-91554072 None:intergenic 45.0%
CTTATGTCAAGCTGGGTCTA+TGG + Chr3:91554325-91554344 MsG0380017066.01.T01:three_prime_UTR 45.0%
CTTCAATTAATCCCCGCTCT+TGG + Chr3:91550223-91550242 MsG0380017066.01.T01:CDS 45.0%
CTTGCGCATATCAGCTATGA+TGG - Chr3:91552239-91552258 None:intergenic 45.0%
GAAACCTGATTCAACTACGG+TGG - Chr3:91552643-91552662 None:intergenic 45.0%
GATTTAGAGGCCTTCTGAAC+TGG - Chr3:91554133-91554152 None:intergenic 45.0%
GCTCTCGAACGAGTGAAAAT+GGG - Chr3:91553867-91553886 None:intergenic 45.0%
GTGAAAATGGGGTCGTCAAA+TGG - Chr3:91553855-91553874 None:intergenic 45.0%
GTGGAGGAGTGAGTAGTTAT+TGG + Chr3:91549968-91549987 MsG0380017066.01.T01:intron 45.0%
TAAATGCTTCATTGCCGCCA+TGG - Chr3:91552886-91552905 None:intergenic 45.0%
TCAATCATCCACGGATGGTT+TGG + Chr3:91549062-91549081 MsG0380017066.01.T01:intron 45.0%
TCAGCACCTCTAACTACTGT+TGG - Chr3:91551984-91552003 None:intergenic 45.0%
TCATCAGTCATCATGGAGCT+CGG + Chr3:91553769-91553788 MsG0380017066.01.T01:CDS 45.0%
TGCATCTCATAGCATAGCCA+GGG + Chr3:91552474-91552493 MsG0380017066.01.T01:intron 45.0%
TGCTCTCGAACGAGTGAAAA+TGG - Chr3:91553868-91553887 None:intergenic 45.0%
TGGTCACCAACAGTAGTTAG+AGG + Chr3:91551975-91551994 MsG0380017066.01.T01:CDS 45.0%
TTCACTCGTTCGAGAGCAAA+GGG + Chr3:91553870-91553889 MsG0380017066.01.T01:CDS 45.0%
TTCTGTAGCATGTAGGATGG+TGG + Chr3:91551955-91551974 MsG0380017066.01.T01:intron 45.0%
TTGTCGCCTTCAATCATCCA+CGG + Chr3:91549053-91549072 MsG0380017066.01.T01:intron 45.0%
TTTCACTCGTTCGAGAGCAA+AGG + Chr3:91553869-91553888 MsG0380017066.01.T01:CDS 45.0%
! AGCTGATATGCGCAAGGTTT+TGG + Chr3:91552243-91552262 MsG0380017066.01.T01:intron 45.0%
! CCTAGCTGATTAGCCATTGA+GGG + Chr3:91554284-91554303 MsG0380017066.01.T01:three_prime_UTR 45.0%
! GACTTTGTGGTGCCAAACTT+TGG + Chr3:91549919-91549938 MsG0380017066.01.T01:intron 45.0%
! TCACCTTGCTATCAGTCACT+TGG + Chr3:91552091-91552110 MsG0380017066.01.T01:CDS 45.0%
! TGATTGGCTATCTTCACCCA+TGG + Chr3:91552866-91552885 MsG0380017066.01.T01:intron 45.0%
! TGCTGCCGTGTCATTGTTTA+TGG + Chr3:91551460-91551479 MsG0380017066.01.T01:CDS 45.0%
! TGGCCTCCTGTTTTATCACA+TGG - Chr3:91553728-91553747 None:intergenic 45.0%
! TTTAGAGTTTCGGTGCGGTT+CGG - Chr3:91550001-91550020 None:intergenic 45.0%
!! CCGTTGCTTTAAAATCGGAC+TGG - Chr3:91550619-91550638 None:intergenic 45.0%
!! GGCCATTTGTTGTGAATGAG+CGG + Chr3:91551774-91551793 MsG0380017066.01.T01:CDS 45.0%
!! GGTTTTCCTTTTAGGAGAGG+CGG + Chr3:91549940-91549959 MsG0380017066.01.T01:intron 45.0%
!! TGAGGTTTCTGGTAGAGTTG+AGG + Chr3:91551820-91551839 MsG0380017066.01.T01:CDS 45.0%
!! TGTTATTATGAGGGTGCTCC+TGG + Chr3:91551342-91551361 MsG0380017066.01.T01:intron 45.0%
!!! CAGCAGCTGTCTTTTTTAGC+TGG + Chr3:91554225-91554244 MsG0380017066.01.T01:three_prime_UTR 45.0%
!!! GCACAGAAGGTTTTTTCTGG+AGG + Chr3:91552297-91552316 MsG0380017066.01.T01:intron 45.0%
AACCTTTGCTGCTGTGGACT+GGG + Chr3:91550462-91550481 MsG0380017066.01.T01:CDS 50.0%
AGGCTTGTAGGCTGTAGCTA+TGG + Chr3:91552510-91552529 MsG0380017066.01.T01:intron 50.0%
CCCTCAATGGCTAATCAGCT+AGG - Chr3:91554287-91554306 None:intergenic 50.0%
CTCATCCAGTGTAAAGTCCC+AGG + Chr3:91554045-91554064 MsG0380017066.01.T01:exon 50.0%
CTGCTCTGCAGGTATCTTTC+TGG + Chr3:91550491-91550510 MsG0380017066.01.T01:CDS 50.0%
CTGGGACTTTACACTGGATG+AGG - Chr3:91554047-91554066 None:intergenic 50.0%
GCAGGTCGTGAGGTACAATA+AGG + Chr3:91551551-91551570 MsG0380017066.01.T01:intron 50.0%
GCCGTGAAGAGTTGCTCTTA+AGG - Chr3:91551672-91551691 None:intergenic 50.0%
GCCTAATTGGTACTTTGCCC+TGG - Chr3:91552494-91552513 None:intergenic 50.0%
GCTGATATCGGAGATTGTCC+AGG + Chr3:91553432-91553451 MsG0380017066.01.T01:intron 50.0%
GCTGGGTCTATGGAATGGTT+CGG + Chr3:91554335-91554354 MsG0380017066.01.T01:three_prime_UTR 50.0%
GGAGAAATAGAGCCCTGCAA+CGG - Chr3:91550291-91550310 None:intergenic 50.0%
GTCAAGCTGGGTCTATGGAA+TGG + Chr3:91554330-91554349 MsG0380017066.01.T01:three_prime_UTR 50.0%
TAGAACGCCGACAACAACTG+TGG - Chr3:91550728-91550747 None:intergenic 50.0%
TTGGCTATCTTCACCCATGG+CGG + Chr3:91552869-91552888 MsG0380017066.01.T01:intron 50.0%
! CCCTAGCTGATTAGCCATTG+AGG + Chr3:91554283-91554302 MsG0380017066.01.T01:three_prime_UTR 50.0%
! GCCAGGGCAAAGTACCAATT+AGG + Chr3:91552490-91552509 MsG0380017066.01.T01:intron 50.0%
! TTTGTTGTGTCGGTCTGCCT+TGG + Chr3:91549282-91549301 MsG0380017066.01.T01:five_prime_UTR 50.0%
!! GGTCTATGGAATGGTTCGGT+TGG + Chr3:91554339-91554358 MsG0380017066.01.T01:three_prime_UTR 50.0%
!! TTTCCTTTTAGGAGAGGCGG+TGG + Chr3:91549943-91549962 MsG0380017066.01.T01:intron 50.0%
AGCAGCCAACCACTTCTGTG+CGG - Chr3:91551501-91551520 None:intergenic 55.0%
CAACCTTTGCTGCTGTGGAC+TGG + Chr3:91550461-91550480 MsG0380017066.01.T01:CDS 55.0%
CGCCTTCAATCATCCACGGA+TGG + Chr3:91549057-91549076 MsG0380017066.01.T01:intron 55.0%
CTGAATTGTGCGGATGGGTG+TGG - Chr3:91553799-91553818 None:intergenic 55.0%
GCGAACTGATCCAACGTGAG+TGG + Chr3:91551882-91551901 MsG0380017066.01.T01:intron 55.0%
GCTTTCACTTGCAGGTCGTG+AGG + Chr3:91551541-91551560 MsG0380017066.01.T01:intron 55.0%
TCTCTCCGCACAGAAGTGGT+TGG + Chr3:91551493-91551512 MsG0380017066.01.T01:CDS 55.0%
TGAGATTTGTGTCGGGCGTG+TGG + Chr3:91549897-91549916 MsG0380017066.01.T01:intron 55.0%
! ACCTTTGCTGCTGTGGACTG+GGG + Chr3:91550463-91550482 MsG0380017066.01.T01:CDS 55.0%
! TGGATGAGGCGTCCATGTTG+CGG - Chr3:91554033-91554052 None:intergenic 55.0%
! TGGTTGGCTGCTGGTGGTAT+GGG + Chr3:91551509-91551528 MsG0380017066.01.T01:CDS 55.0%
AACCTCTCCTACGCCGTTGC+AGG + Chr3:91550275-91550294 MsG0380017066.01.T01:CDS 60.0%
ACACGCTACAGCCGGTACCA+AGG - Chr3:91549302-91549321 None:intergenic 60.0%
ACCCCAGTCCACAGCAGCAA+AGG - Chr3:91550467-91550486 None:intergenic 60.0%
ACCTCTCCTACGCCGTTGCA+GGG + Chr3:91550276-91550295 MsG0380017066.01.T01:CDS 60.0%
ATAGAGCCCTGCAACGGCGT+AGG - Chr3:91550285-91550304 None:intergenic 60.0%
CTGGGGTAATGCTGCTCTGC+AGG + Chr3:91550480-91550499 MsG0380017066.01.T01:CDS 60.0%
TGGGTCTCTCCGCACAGAAG+TGG + Chr3:91551489-91551508 MsG0380017066.01.T01:CDS 60.0%
TGTCGGGCGTGTGGACTTTG+TGG + Chr3:91549906-91549925 MsG0380017066.01.T01:intron 60.0%
! CAGAAGTGGTTGGCTGCTGG+TGG + Chr3:91551503-91551522 MsG0380017066.01.T01:CDS 60.0%
! GCACAGAAGTGGTTGGCTGC+TGG + Chr3:91551500-91551519 MsG0380017066.01.T01:CDS 60.0%
! GTGGTTGGCTGCTGGTGGTA+TGG + Chr3:91551508-91551527 MsG0380017066.01.T01:CDS 60.0%
! GTGTCGGTCTGCCTTGGTAC+CGG + Chr3:91549288-91549307 MsG0380017066.01.T01:five_prime_UTR 60.0%
!! CCTTTTAGGAGAGGCGGTGG+CGG + Chr3:91549946-91549965 MsG0380017066.01.T01:intron 60.0%
CCGCCACCGCCTCTCCTAAA+AGG - Chr3:91549949-91549968 None:intergenic 65.0%
GGAGCCTCACACGCTACAGC+CGG - Chr3:91549310-91549329 None:intergenic 65.0%
! TTTAGGAGAGGCGGTGGCGG+TGG + Chr3:91549949-91549968 MsG0380017066.01.T01:intron 65.0%
!! GGTACCGGCTGTAGCGTGTG+AGG + Chr3:91549303-91549322 MsG0380017066.01.T01:intron 65.0%
GCCCTGCAACGGCGTAGGAG+AGG - Chr3:91550280-91550299 None:intergenic 70.0%
! AGGAGAGGCGGTGGCGGTGG+AGG + Chr3:91549952-91549971 MsG0380017066.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 91548601 91554517 91548601 ID=MsG0380017066.01;Name=MsG0380017066.01
Chr3 mRNA 91548601 91554517 91548601 ID=MsG0380017066.01.T01;Parent=MsG0380017066.01;Name=MsG0380017066.01.T01;_AED=0.32;_eAED=0.34;_QI=304|0.4|0.36|1|0.4|0.45|11|459|377
Chr3 exon 91548601 91548651 91548601 ID=MsG0380017066.01.T01:exon:12444;Parent=MsG0380017066.01.T01
Chr3 exon 91548806 91548935 91548806 ID=MsG0380017066.01.T01:exon:12445;Parent=MsG0380017066.01.T01
Chr3 exon 91549208 91549319 91549208 ID=MsG0380017066.01.T01:exon:12446;Parent=MsG0380017066.01.T01
Chr3 exon 91550209 91550315 91550209 ID=MsG0380017066.01.T01:exon:12447;Parent=MsG0380017066.01.T01
Chr3 exon 91550404 91550521 91550404 ID=MsG0380017066.01.T01:exon:12448;Parent=MsG0380017066.01.T01
Chr3 exon 91551104 91551204 91551104 ID=MsG0380017066.01.T01:exon:12449;Parent=MsG0380017066.01.T01
Chr3 exon 91551413 91551557 91551413 ID=MsG0380017066.01.T01:exon:12450;Parent=MsG0380017066.01.T01
Chr3 exon 91551732 91551841 91551732 ID=MsG0380017066.01.T01:exon:12451;Parent=MsG0380017066.01.T01
Chr3 exon 91551963 91552151 91551963 ID=MsG0380017066.01.T01:exon:12452;Parent=MsG0380017066.01.T01
Chr3 exon 91553050 91553106 91553050 ID=MsG0380017066.01.T01:exon:12453;Parent=MsG0380017066.01.T01
Chr3 exon 91553741 91554517 91553741 ID=MsG0380017066.01.T01:exon:12454;Parent=MsG0380017066.01.T01
Chr3 five_prime_UTR 91548601 91548651 91548601 ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3 five_prime_UTR 91548806 91548935 91548806 ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3 five_prime_UTR 91549208 91549319 91549208 ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3 five_prime_UTR 91550209 91550219 91550209 ID=MsG0380017066.01.T01:five_prime_utr;Parent=MsG0380017066.01.T01
Chr3 CDS 91550220 91550315 91550220 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91550404 91550521 91550404 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91551104 91551204 91551104 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91551413 91551557 91551413 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91551732 91551841 91551732 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91551963 91552151 91551963 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91553050 91553106 91553050 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 CDS 91553741 91554058 91553741 ID=MsG0380017066.01.T01:cds;Parent=MsG0380017066.01.T01
Chr3 three_prime_UTR 91554059 91554517 91554059 ID=MsG0380017066.01.T01:three_prime_utr;Parent=MsG0380017066.01.T01
Gene Sequence

>MsG0380017066.01.T01

ATGCTTCAATTAATCCCCGCTCTTGGTATAATTGGCTTTGCTATCTTTGGTCTTGAACCTCTCCTACGCCGTTGCAGGGCTCTATTTCTCCAAGAATGGAACGATAAAAGTTGGAAGAAAAGTATTTCACGTTATATAATGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTGCTCTGCAGGTATCTTTCTGGATCAGAAGCTTTGTTCGACAAGCACAAAATTTCTGTATGGAGACAAATGCCGACAACAATGAAAGAAAAGTATGTTCCTTTTACATATCTTTGCCATGTTTCCATTCATATGAGCATTGATCTTATCGGGAAAGCTGTATATACTGCAGTATGGGTTGCTGCCGTGTCATTGTTTATGGAGTTGTTGGGTCTCTCCGCACAGAAGTGGTTGGCTGCTGGTGGTATGGGTACAGTATTGCTTTCACTTGCAGGTCATATTCACAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTAAAACAAAGATTAAAGGATATGAGGTTTCTGGTAGAGTTGAGCATGTAGGATGGTGGTCACCAACAGTAGTTAGAGGTGCTGATTGTGAAGCAGTTCACATTCCTAATCACAAGTTGAGTGTGAATGTTGTGAGGAATCTTAGTAAGAAAACTCATTGGCGCATCAAAACTCACCTTGCTATCAGTCACTTGGATGTCAACAAGATTGATGTGAGTGCTCTTGGTTTAATGATATTAGTATCTTGCTTTGTCAAAACTTCACATTCTGAAGAGTATCTCCGTGTTAAGGAGGCCATTCTCTTGGATCTTCTTAGAGTCATCAGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAATTCAGAAGATGTACAGTGATTCTGATTTAGAAATTGATCCATTTGACGACCCCATTTTCACTCGTTCGAGAGCAAAGGGAAACCACTCTTTCCCATTCACAAATTCACCTTATAAAGCTAAGCCTTCAACTCAATCAACTACTATAAATGATGAGAAAGATGCCAAGATTCGTGAAACCTTGATAACTGGTTTCAAAGATGAAGGTGAAAAAATTGCCGCAACATGGACGCCTCATCCAGTGTAA
Protein sequence

>MsG0380017066.01.T01

MLQLIPALGIIGFAIFGLEPLLRRCRALFLQEWNDKSWKKSISRYIMTSYFQPLLLWTGVMLLCRYLSGSEALFDKHKISVWRQMPTTMKEKYVPFTYLCHVSIHMSIDLIGKAVYTAVWVAAVSLFMELLGLSAQKWLAAGGMGTVLLSLAGHIHNFLSSVMIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTVVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDVNKIDVSALGLMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTIQKMYSDSDLEIDPFDDPIFTRSRAKGNHSFPFTNSPYKAKPSTQSTTINDEKDAKIRETLITGFKDEGEKIAATWTPHPV*